Query 026639
Match_columns 235
No_of_seqs 185 out of 319
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 18:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rk8_C PYM protein, within the 99.9 1.1E-24 3.7E-29 155.7 2.1 49 21-69 5-53 (58)
2 3twe_A Alpha4H; unknown functi 75.4 1.3 4.6E-05 26.5 1.6 15 176-190 11-25 (27)
3 4g3b_A Alpha4F3D; alpha helix, 39.1 19 0.00065 21.3 2.1 14 177-190 12-25 (26)
4 1ykh_B RNA polymerase II holoe 28.4 1.8E+02 0.0062 22.8 6.9 45 182-229 63-108 (132)
5 1yke_B RNA polymerase II holoe 28.0 1.7E+02 0.0058 23.7 6.8 45 182-229 63-108 (151)
6 3he5_B Synzip2; heterodimeric 24.4 1.7E+02 0.0057 19.7 6.3 23 207-231 27-49 (52)
7 2l5g_B Putative uncharacterize 22.8 65 0.0022 21.4 2.7 18 178-195 21-38 (42)
8 1m46_B IQ4, IQ4 motif from MYO 18.0 59 0.002 19.2 1.5 15 180-196 4-18 (26)
9 2i32_E Histone regulatory homo 18.0 26 0.00088 24.7 -0.0 21 31-55 36-56 (57)
10 3he5_A Synzip1; heterodimeric 17.7 68 0.0023 21.4 2.0 14 177-190 35-48 (49)
No 1
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=99.89 E-value=1.1e-24 Score=155.73 Aligned_cols=49 Identities=41% Similarity=0.742 Sum_probs=29.2
Q ss_pred cccCCCeeccCccCCCCCcccceecCCCCCCccchhhhhcchHHHHHhh
Q 026639 21 TLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKEL 69 (235)
Q Consensus 21 ~~~~g~~~i~~s~R~DGt~Rk~~rvr~gy~p~eev~~y~~~~~~~~~~~ 69 (235)
...+|++|||+||||||||||+||||+||+|||||++|++++++++++.
T Consensus 5 ~~~~g~~~I~~s~RpDGT~RK~irVr~GY~Pqeev~~Y~~k~~~~~~~r 53 (58)
T 1rk8_C 5 LQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQR 53 (58)
T ss_dssp EEETTEEEECCEECTTSCEECCEECCTTCCC------------------
T ss_pred EccCCCEEcccccCCCCccccceeccCCcCCHHHhhhhhhhhhHHHHhh
Confidence 3568999999999999999999999999999999999999999665443
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=75.41 E-value=1.3 Score=26.55 Aligned_cols=15 Identities=40% Similarity=0.944 Sum_probs=12.8
Q ss_pred CchHHHHHHHHHHHH
Q 026639 176 QDIDKRIRAIKKKIR 190 (235)
Q Consensus 176 ~e~~KkiRnLkKKLR 190 (235)
++.+.++|.|+||||
T Consensus 11 edlqerlrklrkklr 25 (27)
T 3twe_A 11 EDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 367789999999998
No 3
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=39.12 E-value=19 Score=21.34 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHH
Q 026639 177 DIDKRIRAIKKKIR 190 (235)
Q Consensus 177 e~~KkiRnLkKKLR 190 (235)
+.+.++|..+||||
T Consensus 12 d~qerlrk~rkklr 25 (26)
T 4g3b_A 12 DXQERLRKXRKKLR 25 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 56789999999997
No 4
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.39 E-value=1.8e+02 Score=22.81 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCH-HHHHHHhcHHHHHHHHHHHHHhh
Q 026639 182 IRAIKKKIRLSEAQQQKAGQQELKP-EQLEKLSKLEGWRNELKLLEEKK 229 (235)
Q Consensus 182 iRnLkKKLRqIE~Lk~k~~G~~L~~-eQleKl~k~~el~~EL~~Le~~~ 229 (235)
.+.|-.|-|||+.|=...-|..-.+ +|+..| .+|..|+...+..+
T Consensus 63 a~dli~k~kqIe~LIdsLP~~~~see~Q~~ri---~~L~~E~~~~~~el 108 (132)
T 1ykh_B 63 STDIILKTRQINKLIDSLPGVDVSAEEQLRKI---DMLQKKLVEVEDEK 108 (132)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4566778899999987777766554 777765 55666666665543
No 5
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.05 E-value=1.7e+02 Score=23.66 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCH-HHHHHHhcHHHHHHHHHHHHHhh
Q 026639 182 IRAIKKKIRLSEAQQQKAGQQELKP-EQLEKLSKLEGWRNELKLLEEKK 229 (235)
Q Consensus 182 iRnLkKKLRqIE~Lk~k~~G~~L~~-eQleKl~k~~el~~EL~~Le~~~ 229 (235)
.+.|-.|-|||+.|=...-|....+ +|+..| .+|..|+...+..+
T Consensus 63 a~dli~kakqIe~LIdsLPg~~~seeeQ~~ri---~~Le~E~~~~~~el 108 (151)
T 1yke_B 63 STDIILKTRQINKLIDSLPGVDVSAEEQLRKI---DMLQKKLVEVEDEK 108 (151)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4566778899999987777766554 777765 55566666655543
No 6
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.37 E-value=1.7e+02 Score=19.72 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=18.1
Q ss_pred HHHHHHhcHHHHHHHHHHHHHhhhh
Q 026639 207 EQLEKLSKLEGWRNELKLLEEKKAD 231 (235)
Q Consensus 207 eQleKl~k~~el~~EL~~Le~~~a~ 231 (235)
.-|+|| ...|+.||..|+...+.
T Consensus 27 qnleki--ianlrdeiarlenevas 49 (52)
T 3he5_B 27 QNLEKI--IANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHC-
T ss_pred hhHHHH--HHHHHHHHHHHHHHHhh
Confidence 357888 78899999999987653
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.83 E-value=65 Score=21.36 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026639 178 IDKRIRAIKKKIRLSEAQ 195 (235)
Q Consensus 178 ~~KkiRnLkKKLRqIE~L 195 (235)
.+++|-.|++||++.++-
T Consensus 21 te~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 357899999999988864
No 8
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=17.97 E-value=59 Score=19.20 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026639 180 KRIRAIKKKIRLSEAQQ 196 (235)
Q Consensus 180 KkiRnLkKKLRqIE~Lk 196 (235)
.-|-||+||||. +|+
T Consensus 4 rtitnlqkkirk--elk 18 (26)
T 1m46_B 4 RTITNLQKKIRK--ELK 18 (26)
T ss_dssp HHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHH--HHH
Confidence 457788888874 454
No 9
>2i32_E Histone regulatory homolog A; histone deposition, chromatin regulation, histone chaperones, ASF1, HIRA, CAF-1, replication chaperone; 2.70A {Homo sapiens}
Probab=17.95 E-value=26 Score=24.70 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=13.1
Q ss_pred CccCCCCCcccceecCCCCCCccch
Q 026639 31 PTRRPDGTLRKPIRIRAGYVPQDEV 55 (235)
Q Consensus 31 ~s~R~DGt~Rk~~rvr~gy~p~eev 55 (235)
.|+-||| -+||+|=|||++|+
T Consensus 36 Etrt~dG----Krritp~~I~p~~~ 56 (57)
T 2i32_E 36 ETRTADG----RRRITPLCIAQLDT 56 (57)
T ss_dssp EEECTTS----CEEEECEEC-----
T ss_pred eecCCCC----cccccceecCCCCC
Confidence 3677899 57899999999875
No 10
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=17.75 E-value=68 Score=21.40 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=10.7
Q ss_pred chHHHHHHHHHHHH
Q 026639 177 DIDKRIRAIKKKIR 190 (235)
Q Consensus 177 e~~KkiRnLkKKLR 190 (235)
-.+|.|-||+|||.
T Consensus 35 ylekeianlrkkie 48 (49)
T 3he5_A 35 YLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 35788889998874
Done!