Query 026640
Match_columns 235
No_of_seqs 127 out of 427
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 10:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00756 VKc Family of likel 100.0 2E-29 4.4E-34 207.5 15.1 132 61-198 2-141 (142)
2 PRK14889 VKOR family protein; 100.0 3.8E-28 8.2E-33 201.0 13.5 132 61-199 6-141 (143)
3 PF07884 VKOR: Vitamin K epoxi 99.9 9.3E-26 2E-30 183.4 12.5 127 66-198 5-137 (137)
4 COG4243 Predicted membrane pro 99.9 2E-24 4.3E-29 180.7 12.8 134 59-201 7-150 (156)
5 PRK00611 putative disulfide ox 93.5 0.54 1.2E-05 39.0 8.4 60 67-132 69-130 (135)
6 PRK03113 putative disulfide ox 91.9 0.96 2.1E-05 37.6 7.8 63 65-132 68-134 (139)
7 PF07098 DUF1360: Protein of u 82.7 2.9 6.3E-05 33.4 4.9 21 177-197 59-79 (105)
8 PRK01749 disulfide bond format 77.3 13 0.00029 31.7 7.7 57 70-130 82-158 (176)
9 PRK02110 disulfide bond format 74.4 22 0.00047 30.2 8.2 59 69-132 80-159 (169)
10 PRK04388 disulfide bond format 72.4 25 0.00055 29.8 8.1 61 68-132 78-160 (172)
11 COG1495 DsbB Disulfide bond fo 62.3 69 0.0015 27.3 8.8 69 157-228 22-90 (170)
12 COG1138 CcmF Cytochrome c biog 53.9 91 0.002 32.3 9.3 65 67-132 124-192 (648)
13 PRK02110 disulfide bond format 52.6 1.2E+02 0.0027 25.6 8.7 30 164-194 28-57 (169)
14 PRK01749 disulfide bond format 48.7 1.6E+02 0.0035 25.0 8.9 28 165-193 29-56 (176)
15 PRK04307 putative disulfide ox 47.4 1.3E+02 0.0029 26.9 8.4 47 148-195 23-70 (218)
16 PF06781 UPF0233: Uncharacteri 43.3 60 0.0013 25.1 4.9 31 51-81 21-54 (87)
17 PRK04388 disulfide bond format 41.4 2.2E+02 0.0047 24.1 8.5 32 164-196 25-56 (172)
18 COG5454 Predicted secreted pro 37.1 1E+02 0.0023 23.9 5.2 45 40-84 29-74 (89)
19 PF07330 DUF1467: Protein of u 34.1 1.3E+02 0.0029 23.0 5.5 40 27-70 20-60 (85)
20 PRK00159 putative septation in 28.0 1.9E+02 0.0041 22.5 5.4 26 56-81 26-54 (87)
21 PRK06265 cobalt transport prot 27.4 1.2E+02 0.0027 26.1 4.9 28 180-207 12-39 (199)
22 TIGR03145 cyt_nit_nrfE cytochr 24.9 7.9E+02 0.017 25.5 13.9 70 98-169 159-232 (628)
23 PRK02251 putative septation in 21.8 2.8E+02 0.0061 21.5 5.3 25 57-81 28-55 (87)
24 COG3196 Uncharacterized protei 20.9 28 0.00061 29.9 -0.4 10 174-183 52-61 (183)
25 PF11332 DUF3134: Protein of u 20.4 59 0.0013 24.5 1.3 19 15-33 2-20 (73)
No 1
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.96 E-value=2e-29 Score=207.51 Aligned_cols=132 Identities=37% Similarity=0.583 Sum_probs=108.8
Q ss_pred chhHHH-HHHHHHHHHHHHHHHHhHhcC-----CCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh
Q 026640 61 SPYGWC-AGIGGVGFLETTYLSYLKLTN-----SDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL 133 (235)
Q Consensus 61 r~~~w~-lvLa~iGl~~S~YLt~~kl~~-----~~~~Cdin~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~~ 133 (235)
|..+++ ++++.+|+++|.|++++|++. +++.||+|+ .||++|++||||++||+||+++|+++|++++.+++..
T Consensus 2 ~~~~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~ 81 (142)
T smart00756 2 RWTRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLG 81 (142)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 344555 678889999999999999742 348999998 9999999999999999999999999999999988874
Q ss_pred -hcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcc
Q 026640 134 -ARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (235)
Q Consensus 134 -~~~~~~~~~~~~~~rw~~lgls~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~ 198 (235)
.+.+.++|. ++.+...++.+..+++|++|+|.+ +||++||||+++|++++++|+++..+
T Consensus 82 ~~~~~~~~~~-----~~~l~~~~~~~~~~s~yl~y~~~~-vi~~~C~~C~~~~~~~~~lf~~~~~~ 141 (142)
T smart00756 82 LLGVTLPRWT-----WRLLFLGSLAGAVFSVYLIYLLVF-VIKALCLYCILSAVVSISLFILVTIG 141 (142)
T ss_pred HccccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHccCcHHHHHHHHHHHHHHHHHHhc
Confidence 444555221 224444567778899999999987 59999999999999999999987754
No 2
>PRK14889 VKOR family protein; Provisional
Probab=99.96 E-value=3.8e-28 Score=200.96 Aligned_cols=132 Identities=23% Similarity=0.389 Sum_probs=104.1
Q ss_pred chhHHH-HHHHHHHHHHHHHHHHhH--hcCCCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHhhcc
Q 026640 61 SPYGWC-AGIGGVGFLETTYLSYLK--LTNSDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARK 136 (235)
Q Consensus 61 r~~~w~-lvLa~iGl~~S~YLt~~k--l~~~~~~Cdin~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~~~~~ 136 (235)
++++++ ++++.+|+++|.|++++| .+++++.||+|+ +||++|++||||++||+||+++|+++|.+++.+++.....
T Consensus 6 ~~~~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~ 85 (143)
T PRK14889 6 NGILYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT 85 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 445555 566779999999999987 457789999999 9999999999999999999999999999999998874322
Q ss_pred cCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhccc
Q 026640 137 SFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEF 199 (235)
Q Consensus 137 ~~~~~~~~~~~rw~~lgls~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~~ 199 (235)
.+++..+ ..|.| ......++.|+.|+|.+ +||++||||+++|++++++|++.....
T Consensus 86 -~~~~~~~--~~~~~---~~~g~~~~~yL~y~~~f-vi~a~C~~C~~~~~~~~~~~~~~~~~~ 141 (143)
T PRK14889 86 -LKRILGR--VISLW---SIIGLAIVPYLVYLEVF-VLGAICIYCTIAHVSILAAFILILIKL 141 (143)
T ss_pred -hhHHHHH--HHHHH---HHHHHHHHHHHHHHHHH-HHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 11222 23445678999999987 599999999999999999999876544
No 3
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=99.93 E-value=9.3e-26 Score=183.37 Aligned_cols=127 Identities=35% Similarity=0.627 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCC----CCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hcccCC
Q 026640 66 CAGIGGVGFLETTYLSYLKLTNS----DAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSFP 139 (235)
Q Consensus 66 ~lvLa~iGl~~S~YLt~~kl~~~----~~~Cdin~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~~-~~~~~~ 139 (235)
..+++.+|+++|.|++++|++.. ++.||+++ .||++|++||||++||+||+.+|+++|..++.+++.. .+.+.+
T Consensus 5 ~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~~~ 84 (137)
T PF07884_consen 5 LLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRRLS 84 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT-S
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccchh
Confidence 46788899999999999998644 48999998 9999999999999999999999999999999988763 323344
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcc
Q 026640 140 IGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (235)
Q Consensus 140 ~~~~~~~~rw~~lgls~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~ 198 (235)
++. ....+..+.++..+++|+.|+|.+ ++|++|+||+++|++++.++++++.+
T Consensus 85 ~~~-----~~~l~~~~~~~~~~~~~l~~~~~~-~i~~~C~~Cl~~~~i~~~l~~l~~~~ 137 (137)
T PF07884_consen 85 RWL-----WLLLFALSFIGLVFSLYLIYIQIF-VIKAWCPYCLVSYAINLALFILSLIR 137 (137)
T ss_dssp TTH-----HHHHHHHHHHHHHHHHHHHHHHHT-TS----HHHHHHHHHHHHHHHHHHS-
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 221 123344455666788999999986 59999999999999999999987753
No 4
>COG4243 Predicted membrane protein [Function unknown]
Probab=99.92 E-value=2e-24 Score=180.75 Aligned_cols=134 Identities=28% Similarity=0.433 Sum_probs=106.8
Q ss_pred CCchhHHH-HHHHHHHHHHHHHHHHhHh---cC--CCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHH
Q 026640 59 GFSPYGWC-AGIGGVGFLETTYLSYLKL---TN--SDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGL 131 (235)
Q Consensus 59 ~~r~~~w~-lvLa~iGl~~S~YLt~~kl---~~--~~~~Cdin~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l 131 (235)
.++..+|. +.++.+|...+.-++++++ ++ +...||.|+ .||++|++||||++||+||+++|+++|+++.++++
T Consensus 7 ~p~~~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~al 86 (156)
T COG4243 7 APWILGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAAL 86 (156)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHH
Confidence 45677887 4555677777776666665 33 345678889 99999999999999999999999999999999998
Q ss_pred HhhcccCCCcccchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcccch
Q 026640 132 LLARKSFPIGINESYGRLILLGS---STSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSV 201 (235)
Q Consensus 132 ~~~~~~~~~~~~~~~~rw~~lgl---s~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~~~~ 201 (235)
......++ ||+|.++ ++.+.+++.|++|++.+ ++|++|+||+++|+.++.+|++...+.+|
T Consensus 87 l~~~~~l~--------~~~~~~l~v~~~~g~~f~~yLiY~e~~-~~~alC~YCtv~h~~~l~~~vl~~~~~~~ 150 (156)
T COG4243 87 LGVAGVLE--------RWTWIGLLVGSLVGSAFVPYLIYLELF-VIGALCLYCTVAHLSILLLFVLATAGRRW 150 (156)
T ss_pred HHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 75333344 3444433 45677889999999876 69999999999999999999999888876
No 5
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=93.52 E-value=0.54 Score=39.02 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhHh-cC-CCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026640 67 AGIGGVGFLETTYLSYLKL-TN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (235)
Q Consensus 67 lvLa~iGl~~S~YLt~~kl-~~-~~~~Cdin~vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~ 132 (235)
+.++..|+..+.|-.+.+. +. ..+.|. +.+|+++ .| .++|++.|.+-+++|..++++.+.
T Consensus 69 l~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~---~~-~fl~lsiP~wSl~aF~~i~~l~~~ 130 (135)
T PRK00611 69 LPLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTK---LF-LFGFITMPMASAAAFCAIACLLVL 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCccc---ch-hcccccHHHHHHHHHHHHHHHHHH
Confidence 3557799999999887664 33 235785 3589998 34 789999999999999987766654
No 6
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=91.91 E-value=0.96 Score=37.62 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhH-hc---CCCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026640 65 WCAGIGGVGFLETTYLSYLK-LT---NSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (235)
Q Consensus 65 w~lvLa~iGl~~S~YLt~~k-l~---~~~~~Cdin~vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~ 132 (235)
..+.++..|+.++.|-.+.+ ++ +..+.|. +.+|+++.-.+ +.|++.|.+-+++|.+++++.+.
T Consensus 68 y~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~~i~~l~~~ 134 (139)
T PRK03113 68 YSLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFITIAVCSFI 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHHHHHHHHHH
Confidence 34556679999999887765 33 2235776 34899865553 55699999999999998877654
No 7
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=82.65 E-value=2.9 Score=33.36 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHHHHHHhc
Q 026640 177 TCSYCLTSALLSFSLFFISLK 197 (235)
Q Consensus 177 lCpyC~~s~vvti~lf~~tl~ 197 (235)
-||||+..|+.........+.
T Consensus 59 sCpwC~gvWvA~~~~~~~v~~ 79 (105)
T PF07098_consen 59 SCPWCTGVWVAAGLAAGYVFA 79 (105)
T ss_pred cChhHHHHHHHHHHHHHHHHh
Confidence 699999999998877655443
No 8
>PRK01749 disulfide bond formation protein B; Provisional
Probab=77.33 E-value=13 Score=31.67 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhHh-cCCCCCCCC------------------CC-CCccccccccchhccCCchhHHHHHHHHHHHHH
Q 026640 70 GGVGFLETTYLSYLKL-TNSDAFCPI------------------GG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVL 129 (235)
Q Consensus 70 a~iGl~~S~YLt~~kl-~~~~~~Cdi------------------n~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l 129 (235)
+..|...+.|-.+.+. +++...|+. .+ .+|+++. -++||++.|.+-+++|..++++
T Consensus 82 al~G~~iA~~hv~~q~~~~~~~~C~~~~~~~~~lpl~~~l~~lf~~~~~C~~~~----w~~lGlSmp~wsll~F~~~~~~ 157 (176)
T PRK01749 82 AWKGLQLALEHTDYQLNPSPFNTCDFFVEFPSWLPLDKWLPSVFVASGDCSERQ----WQFLGLEMPQWLVVIFAAYLVV 157 (176)
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCCcccccccCCHHHHHHHhcCCCCCCCCcc----hhhcccCHHHHHHHHHHHHHHH
Confidence 4589999988765443 222257863 23 6788664 4589999999999999998887
Q ss_pred H
Q 026640 130 G 130 (235)
Q Consensus 130 ~ 130 (235)
+
T Consensus 158 ~ 158 (176)
T PRK01749 158 A 158 (176)
T ss_pred H
Confidence 5
No 9
>PRK02110 disulfide bond formation protein B; Provisional
Probab=74.40 E-value=22 Score=30.23 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCCC--------------------C-CCccccccccchhccCCchhHHHHHHHHHHH
Q 026640 69 IGGVGFLETTYLSYLKLTNSDAFCPIG--------------------G-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVA 127 (235)
Q Consensus 69 La~iGl~~S~YLt~~kl~~~~~~Cdin--------------------~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl 127 (235)
.+..|...+.|-.+.+.. +...|+.. + .+|+++ +-++||++.+.+-+++|.+++
T Consensus 80 ~a~~G~~ia~~h~~~q~~-p~~~Cg~~~~~~~~~~lpl~~~~~~~f~~~g~C~~~----~w~llGlsmp~wsli~F~~~~ 154 (169)
T PRK02110 80 SALGGIAVAGRHVYIQLN-PGFSCGIDALQPIVDSLPPAKWLPGVFKVDGLCETP----YPPILGLSLPGWALIAFVLIA 154 (169)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCCCCCcchHHHHhCCHHHHHHHHhcCCCCccCc----CccccccCHHHHHHHHHHHHH
Confidence 345899999888877742 22667521 2 346554 345899999999999998877
Q ss_pred HHHHH
Q 026640 128 VLGLL 132 (235)
Q Consensus 128 ~l~l~ 132 (235)
++.+.
T Consensus 155 l~~~~ 159 (169)
T PRK02110 155 VAVAV 159 (169)
T ss_pred HHHHH
Confidence 66443
No 10
>PRK04388 disulfide bond formation protein B; Provisional
Probab=72.43 E-value=25 Score=29.77 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhHh-c-CCCCCCCC-------------------CC-CCccccccccchhccCCchhHHHHHHHHH
Q 026640 68 GIGGVGFLETTYLSYLKL-T-NSDAFCPI-------------------GG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125 (235)
Q Consensus 68 vLa~iGl~~S~YLt~~kl-~-~~~~~Cdi-------------------n~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~ 125 (235)
..+..|...+.|-.+.+. + +....|+. .+ .+|+++- =++||++.|.+-+++|.+
T Consensus 78 ~~a~~G~~iA~~h~~lq~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~~~~~~~C~~~~----w~~lGLSmp~wsll~f~~ 153 (172)
T PRK04388 78 IAAGVGMGIAARHVWVQIRPKDMMSSCGPPLSFLSETMGPFEVFRTVLTGTGDCGNID----WRFLGLSMPMWSMVWFVG 153 (172)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCcCChhhhhhhccCHHHHHHHHhCCCCCCCCCc----chhhccCHHHHHHHHHHH
Confidence 334589999998887764 3 33457841 12 4577653 348999999999999998
Q ss_pred HHHHHHH
Q 026640 126 VAVLGLL 132 (235)
Q Consensus 126 vl~l~l~ 132 (235)
++++.+.
T Consensus 154 l~~l~~~ 160 (172)
T PRK04388 154 LALWALY 160 (172)
T ss_pred HHHHHHH
Confidence 8877654
No 11
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=62.33 E-value=69 Score=27.27 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 026640 157 SMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSS 228 (235)
Q Consensus 157 ~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 228 (235)
++.....+=+|+|... -.+-|+-|..--...+++-+....+..-++..+ .+.+...+..+-...++|-.
T Consensus 22 ~~~~~~~~al~fq~i~-g~~PC~LC~~QR~~~~~~~~i~~l~~~~~~~~~--~r~~~~~l~l~g~~~giy~a 90 (170)
T COG1495 22 GLALALLAALYFQYIL-GLEPCPLCLYQRIAMYGLGVILLLALLIGPLNR--LRLYGLALALIGAGLGIYHA 90 (170)
T ss_pred HHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHHHHHHHH
Confidence 3334444556777753 568999999998888885544433333333222 44444444444444555543
No 12
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=53.87 E-value=91 Score=32.33 Aligned_cols=65 Identities=17% Similarity=0.441 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCC--CC--CCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026640 67 AGIGGVGFLETTYLSYLKLTNSD--AF--CPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (235)
Q Consensus 67 lvLa~iGl~~S~YLt~~kl~~~~--~~--Cdin~vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~ 132 (235)
.+++..|++.+.++.+.-+...+ .. =+..+-+=..+++ .++-++.-|+=++|-++|.+.+..+++
T Consensus 124 ~vlavlgli~~~f~~fil~~snPF~r~~p~~~eGrgLNPlLQ-d~gli~HPPllYlGYvgfsV~fs~avA 192 (648)
T COG1138 124 RVLAVLGLITAGFLLFILFTSNPFTRLFPVPPEGRGLNPLLQ-DPGLIFHPPLLYLGYVGFSVAFSVAVA 192 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCCCChhhh-CcccccCCcchhhhHHHHHHHHHHHHH
Confidence 35666677777777766554221 00 0111134445777 888889999999999999999888776
No 13
>PRK02110 disulfide bond formation protein B; Provisional
Probab=52.60 E-value=1.2e+02 Score=25.61 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCcchhhHHHHHHHHHHHHH
Q 026640 164 YFLYILSTNFSGATCSYCLTSALLSFSLFFI 194 (235)
Q Consensus 164 yll~i~~~~vI~alCpyC~~s~vvti~lf~~ 194 (235)
.-+|+|... -..-|+.|+..-...+++.+.
T Consensus 28 ~Al~~Q~~~-g~~PC~LCi~QR~~~~~i~l~ 57 (169)
T PRK02110 28 GALYLQYVK-GEDPCPLCIIQRYAFLLIAIF 57 (169)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHHHH
Confidence 335777653 568999999887666655543
No 14
>PRK01749 disulfide bond formation protein B; Provisional
Probab=48.65 E-value=1.6e+02 Score=25.01 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCcchhhHHHHHHHHHHHH
Q 026640 165 FLYILSTNFSGATCSYCLTSALLSFSLFF 193 (235)
Q Consensus 165 ll~i~~~~vI~alCpyC~~s~vvti~lf~ 193 (235)
-+|+|... --.-|+.|+..-...+++..
T Consensus 29 Al~~Q~~l-gl~PC~LCi~QR~~~~~l~l 56 (176)
T PRK01749 29 ALYFQHVM-LLKPCVMCIYERVALFGILG 56 (176)
T ss_pred HHHHHHHc-CCCCcHhHHHHHHHHHHHHH
Confidence 36777753 56899999988765555444
No 15
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=47.43 E-value=1.3e+02 Score=26.90 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcchhhHHHHHHHHHHHHHH
Q 026640 148 RLILLGSSTSMAAASAYF-LYILSTNFSGATCSYCLTSALLSFSLFFIS 195 (235)
Q Consensus 148 rw~~lgls~~~~~~svyl-l~i~~~~vI~alCpyC~~s~vvti~lf~~t 195 (235)
|+.|+.+........+.- +|+|... --+-|+.|+..-...+.+.+..
T Consensus 23 R~~wlll~l~~~~L~~~Al~yfQ~vl-gL~PC~LCIyQR~a~l~i~l~g 70 (218)
T PRK04307 23 RFLWLLMAIAMGGLIILAHSFFQIYL-YMAPCEQCVYIRFAMFVMAIGG 70 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHH
Confidence 444544432222223333 5777753 5589999999887776655543
No 16
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=43.31 E-value=60 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=15.3
Q ss_pred CCCCCCCCCCchhHHHH---HHHHHHHHHHHHHH
Q 026640 51 TPSPSSTSGFSPYGWCA---GIGGVGFLETTYLS 81 (235)
Q Consensus 51 ~~~~~~~~~~r~~~w~l---vLa~iGl~~S~YLt 81 (235)
+......++++.|.-++ .+-++-.++..|++
T Consensus 21 ~~~~~~~~sp~W~~p~m~~lmllGL~WiVvyYi~ 54 (87)
T PF06781_consen 21 PVKVKAKPSPRWYAPLMLGLMLLGLLWIVVYYIS 54 (87)
T ss_pred CccccCCCCCccHHHHHHHHHHHHHHHHhhhhcc
Confidence 33333456666666652 22234445555655
No 17
>PRK04388 disulfide bond formation protein B; Provisional
Probab=41.42 E-value=2.2e+02 Score=24.08 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHh
Q 026640 164 YFLYILSTNFSGATCSYCLTSALLSFSLFFISL 196 (235)
Q Consensus 164 yll~i~~~~vI~alCpyC~~s~vvti~lf~~tl 196 (235)
.-+|+|... --.-|+.|+..-...+++.+..+
T Consensus 25 ~Aly~Q~~~-gl~PC~LCi~QR~~~~~i~l~~l 56 (172)
T PRK04388 25 YAIFVQLHL-GLEPCPLCIFQRIAFAALALLFL 56 (172)
T ss_pred HHHHHHHHc-CCCCcHHHHHHHHHHHHHHHHHH
Confidence 335777753 56899999998766665554443
No 18
>COG5454 Predicted secreted protein [Function unknown]
Probab=37.06 E-value=1e+02 Score=23.88 Aligned_cols=45 Identities=20% Similarity=0.095 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCchhHHHHHHHHHHHHHHHHHHHhH
Q 026640 40 RDSDSDSDLRTTPSPSSTS-GFSPYGWCAGIGGVGFLETTYLSYLK 84 (235)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~-~~r~~~w~lvLa~iGl~~S~YLt~~k 84 (235)
.+++-++.+++-+|+|..+ ..|.+.+-.+++.+=...-.++++.+
T Consensus 29 q~ee~dv~lGtv~sAP~~p~~~R~vl~TT~~savi~gl~y~lt~~~ 74 (89)
T COG5454 29 QDEEGDVTLGTVPSAPANPHLLRAVLRTTVASAVIFGLFYGLTHFL 74 (89)
T ss_pred hhhcCCCCCCcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778888888888 55666665566655444445555544
No 19
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=34.08 E-value=1.3e+02 Score=23.05 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=21.3
Q ss_pred cccccccccCCcCCCCCCCCCCCCCCCCCCCCCCch-hHHHHHHH
Q 026640 27 SVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSP-YGWCAGIG 70 (235)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~w~lvLa 70 (235)
.+||+.=-++ +++-+..+++++|+|..+..++ ..|-.+++
T Consensus 20 ~vLP~gvrtq----~E~g~vv~Gt~~sAP~~~~l~rk~~~TTiia 60 (85)
T PF07330_consen 20 AVLPFGVRTQ----DEAGEVVPGTDPSAPANPRLKRKALITTIIA 60 (85)
T ss_pred HHccCCcccc----CcCCCcCCCCCCCCCCCchHHHHHHHHHHHH
Confidence 4566654333 3333445678888888774443 33333444
No 20
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=28.03 E-value=1.9e+02 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=13.1
Q ss_pred CCCCCchhHHHH---HHHHHHHHHHHHHH
Q 026640 56 STSGFSPYGWCA---GIGGVGFLETTYLS 81 (235)
Q Consensus 56 ~~~~~r~~~w~l---vLa~iGl~~S~YLt 81 (235)
..++++.|.-++ .+-++-.++..|++
T Consensus 26 ~~~sp~W~~~~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 26 AGPSSVWYVVLMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555542 22234455666664
No 21
>PRK06265 cobalt transport protein CbiM; Validated
Probab=27.40 E-value=1.2e+02 Score=26.14 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHhcccchHHHHHH
Q 026640 180 YCLTSALLSFSLFFISLKEFSVEEIQKV 207 (235)
Q Consensus 180 yC~~s~vvti~lf~~tl~~~~~~~~~~~ 207 (235)
+|...|+++++++....+..+|+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (199)
T PRK06265 12 VLAGGWVIAAAGVALGLRRLDEERIPLV 39 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhHHH
Confidence 3455555555555554444445444433
No 22
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=24.93 E-value=7.9e+02 Score=25.47 Aligned_cols=70 Identities=14% Similarity=0.272 Sum_probs=40.8
Q ss_pred CccccccccchhccCCchhHHHHHHHHHHHHHHHH-hhcccCCCcccchhHHHHHHHH---HHHHHHHHHHHHHHH
Q 026640 98 SCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL-LARKSFPIGINESYGRLILLGS---STSMAAASAYFLYIL 169 (235)
Q Consensus 98 sC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~-~~~~~~~~~~~~~~~rw~~lgl---s~~~~~~svyll~i~ 169 (235)
+=...+++++=. +..|..++|.++|++.+.+++. +..++.+....+.+.+|...+. +++...+ .+|.|.+
T Consensus 159 ~lnP~Lq~~~l~-iHpp~l~lgya~~~v~f~~a~~~L~~~~~~~~~~~~~~~~~~~g~~~LT~GI~~G-~~WAy~~ 232 (628)
T TIGR03145 159 DLNPMLQDIGLI-FHPPLLYLGYVGFAVNFAMALAALISGHLDAAVARWSRPWVLLSWVFLTGGIMLG-SWWAYYE 232 (628)
T ss_pred CCCchhcCCChh-hhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Confidence 344568877544 7889999999999999988876 3333332212223334444432 2333332 4666665
No 23
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=21.75 E-value=2.8e+02 Score=21.51 Aligned_cols=25 Identities=28% Similarity=0.061 Sum_probs=12.9
Q ss_pred CCCCchhHHHH---HHHHHHHHHHHHHH
Q 026640 57 TSGFSPYGWCA---GIGGVGFLETTYLS 81 (235)
Q Consensus 57 ~~~~r~~~w~l---vLa~iGl~~S~YLt 81 (235)
.++++.|..++ .+-++-.++..|++
T Consensus 28 ~~sP~W~~~~m~~lm~~Gl~WlvvyYl~ 55 (87)
T PRK02251 28 KSNPRWFVPLFVALMIIGLIWLVVYYLS 55 (87)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566666552 22234455666664
No 24
>COG3196 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.86 E-value=28 Score=29.91 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=8.5
Q ss_pred hCCcchhhHH
Q 026640 174 SGATCSYCLT 183 (235)
Q Consensus 174 I~alCpyC~~ 183 (235)
-+++||||+.
T Consensus 52 ~~~LCPWCIA 61 (183)
T COG3196 52 NEALCPWCIA 61 (183)
T ss_pred ccccCCceec
Confidence 4699999986
No 25
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.43 E-value=59 Score=24.45 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=17.0
Q ss_pred CCCCCCCCCCccccccccc
Q 026640 15 SSLPSLPHRTRLSVLPVKC 33 (235)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (235)
|||.|.||.-+-++||+|=
T Consensus 2 PsL~eepR~q~a~VIpl~~ 20 (73)
T PF11332_consen 2 PSLREEPRNQPAPVIPLKQ 20 (73)
T ss_pred CccccccccCCCCeecCCC
Confidence 7999999999999999875
Done!