Query 026640
Match_columns 235
No_of_seqs 127 out of 427
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kp9_A Vkorc1/thioredoxin doma 100.0 7.1E-36 2.4E-40 270.4 16.8 164 59-229 15-181 (291)
2 2zuq_A Disulfide bond formatio 84.7 2.9 0.0001 34.4 7.4 61 68-132 79-159 (176)
3 2zuq_A Disulfide bond formatio 34.3 93 0.0032 25.2 6.4 28 166-194 30-57 (176)
4 3kp9_A Vkorc1/thioredoxin doma 13.9 4.7E+02 0.016 22.7 7.1 60 147-207 97-156 (291)
5 1gu9_A Alkylhydroperoxidase D; 13.3 2.8E+02 0.0097 22.7 5.2 33 177-214 129-161 (177)
6 1q90_G Cytochrome B6F complex 12.1 1.4E+02 0.0047 18.8 2.2 16 69-84 16-31 (37)
7 2cwq_A Hypothetical protein TT 11.9 4.7E+02 0.016 19.7 5.8 32 177-213 89-120 (137)
8 2ouw_A Alkylhydroperoxidase AH 11.6 4.6E+02 0.016 19.2 5.7 29 176-209 82-110 (138)
9 3bey_A Conserved protein O2701 10.2 2.9E+02 0.0099 19.1 3.8 30 177-211 49-78 (96)
10 1col_A Colicin A; antibacteria 9.0 2.3E+02 0.008 24.0 3.2 27 106-132 160-186 (204)
No 1
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=100.00 E-value=7.1e-36 Score=270.39 Aligned_cols=164 Identities=25% Similarity=0.330 Sum_probs=139.9
Q ss_pred CCchhHHH-HHHHHHHHHHHHHHHHhHhcC-CCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hc
Q 026640 59 GFSPYGWC-AGIGGVGFLETTYLSYLKLTN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-AR 135 (235)
Q Consensus 59 ~~r~~~w~-lvLa~iGl~~S~YLt~~kl~~-~~~~Cdin~vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl~l~l~~-~~ 135 (235)
..|..+|+ ++++++|+++|+||+++|+++ ++++||+| .||++|++||||++||+||+++|+++|++++++++.. .+
T Consensus 15 ~~~~~~~~~~~l~~iGl~~s~yLt~~~~~~~~~~~C~~~-~sC~~Vl~S~~a~~fGiP~~~~G~~~y~~v~~l~~~~~~~ 93 (291)
T 3kp9_A 15 LQRHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGD-GGSDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGL 93 (291)
T ss_dssp -CCSCSHHHHHHHHHHHHHHHHHHHHHHHCCCCSCCCC----CCSGGGSSSSEETTEEHHHHHHHHHHHHHHHHHCC--C
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CChhhhcccccHhhcCCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455554 678889999999999999987 88999998 7999999999999999999999999999999999864 33
Q ss_pred ccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 026640 136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIA 215 (235)
Q Consensus 136 ~~~~~~~~~~~~rw~~lgls~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~~~~~~~~~~~~~~~~~~ 215 (235)
.++++| .++.++..++++.+++.|++|++.+ +||++||||+++|++++++|++++.|++|+|++|+++++++|+
T Consensus 94 ~~~~~~-----~~~~l~~~~~~~~~fs~yL~y~~~~-vi~a~C~~C~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~ 167 (291)
T 3kp9_A 94 PLVKRW-----RWPALFGLVSAMTAFEMYMLYLMVA-VLRQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVA 167 (291)
T ss_dssp TTCSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCCHHHHHHHHHHHHHHHHHHSSCHHHHCTHHHHHHHHHH
T ss_pred cchhhH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHH
Confidence 555532 1234444567788899999999987 5999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCC
Q 026640 216 SLVVAALSTSYSSI 229 (235)
Q Consensus 216 ~~v~~~~~~~~~~~ 229 (235)
++|++|++++|+++
T Consensus 168 ~~~~~~~~~~~~~~ 181 (291)
T 3kp9_A 168 FLTLVTTIGVYANQ 181 (291)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999997
No 2
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=84.71 E-value=2.9 Score=34.38 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhH-hcCCCCCCCCC------------------C-CCccccccccchhccCCchhHHHHHHHHHHH
Q 026640 68 GIGGVGFLETTYLSYLK-LTNSDAFCPIG------------------G-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVA 127 (235)
Q Consensus 68 vLa~iGl~~S~YLt~~k-l~~~~~~Cdin------------------~-vsC~~Vl~S~yA~vfGiPnallGl~~Y~~vl 127 (235)
..+.+|...+.|=++.+ .++..+.|+.. + .+|+++- =++||++.|.+-+++|.+++
T Consensus 79 ~~a~~G~~iA~~H~~lq~~p~~~~~C~~~~~~~~~~pl~~~l~~~~~~~g~C~~~~----w~~lGlsmp~wsli~F~~~~ 154 (176)
T 2zuq_A 79 YSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAERQ----WDFLGLEMPQWLLGIFIAYL 154 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCCCCCCC-----CCSSTTCSTTTCCCCCCCSCC----CCSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhcccCCCHHHHHHHHhcCCCCCcccc----HHHcCCcHHHHHHHHHHHHH
Confidence 34568999998866655 44444789631 4 6788763 24899999999999999888
Q ss_pred HHHHH
Q 026640 128 VLGLL 132 (235)
Q Consensus 128 ~l~l~ 132 (235)
++++.
T Consensus 155 ~~~~~ 159 (176)
T 2zuq_A 155 IVAVL 159 (176)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 77765
No 3
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=34.27 E-value=93 Score=25.18 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCcchhhHHHHHHHHHHHHH
Q 026640 166 LYILSTNFSGATCSYCLTSALLSFSLFFI 194 (235)
Q Consensus 166 l~i~~~~vI~alCpyC~~s~vvti~lf~~ 194 (235)
+|+|... -..-|+.|+.--....++.+.
T Consensus 30 l~fQ~v~-gl~PC~LCi~QR~~~~~~~~~ 57 (176)
T 2zuq_A 30 LWFQHVM-LLKPSVLCIYERVALFGVLGA 57 (176)
T ss_dssp HHHHHTS-CCCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCCcHhHHHHHHHHHHHHHH
Confidence 5777643 468999999887666664443
No 4
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=13.86 E-value=4.7e+02 Score=22.74 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHhcccchHHHHHH
Q 026640 147 GRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKV 207 (235)
Q Consensus 147 ~rw~~lgls~~~~~~svyll~i~~~~vI~alCpyC~~s~vvti~lf~~tl~~~~~~~~~~~ 207 (235)
-||.|.++.++..++.++-.|+.+ ..+-.+=-+|..=-+.-+..+.+.+......++.+.
T Consensus 97 ~~~~~~~l~~~~~~~~~fs~yL~y-~~~~vi~a~C~~C~~~~~i~~~l~~~~~~g~~~~~~ 156 (291)
T 3kp9_A 97 KRWRWPALFGLVSAMTAFEMYMLY-LMVAVLRQFCMYCTTAIILVAGLGLVTVLGHRWLDG 156 (291)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHH-HHHHTSCCCCHHHHHHHHHHHHHHHHHHSSCHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCcHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence 446666555555555555555543 344555556665555555555555555555555554
No 5
>1gu9_A Alkylhydroperoxidase D; oxidoreductase; 1.9A {Mycobacterium tuberculosis} SCOP: a.152.1.1 PDB: 1knc_A 1me5_A 1lw1_A
Probab=13.31 E-value=2.8e+02 Score=22.66 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=23.6
Q ss_pred cchhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 026640 177 TCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCI 214 (235)
Q Consensus 177 lCpyC~~s~vvti~lf~~tl~~~~~~~~~~~~~~~~~~ 214 (235)
=|.||+..|.-..- -.|...+++.+.......+
T Consensus 129 gC~yCv~~Ht~~a~-----~~G~s~e~I~eal~vA~~~ 161 (177)
T 1gu9_A 129 GCSHCLVAHEHTLR-----TVGVDREAIFEALKAAAIV 161 (177)
T ss_dssp TCHHHHHHHHHHHH-----HTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHH
Confidence 69999999986642 2477788877776555443
No 6
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=12.08 E-value=1.4e+02 Score=18.82 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhH
Q 026640 69 IGGVGFLETTYLSYLK 84 (235)
Q Consensus 69 La~iGl~~S~YLt~~k 84 (235)
+..+|+.+++|+.|.+
T Consensus 16 vtlaGLfv~Ay~QyrR 31 (37)
T 1q90_G 16 VTIAGLFVTAYLQYLR 31 (37)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3357999999999865
No 7
>2cwq_A Hypothetical protein TTHA0727; conserved hypothetical protein, all alpha, structural genomi NPPSFA; 1.90A {Thermus thermophilus} SCOP: a.152.1.4
Probab=11.93 E-value=4.7e+02 Score=19.71 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=23.0
Q ss_pred cchhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 026640 177 TCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLC 213 (235)
Q Consensus 177 lCpyC~~s~vvti~lf~~tl~~~~~~~~~~~~~~~~~ 213 (235)
-|.||+..|.-... -.|...+++.+.......
T Consensus 89 gC~~Cl~~H~~~A~-----~~G~t~eeI~eal~~a~~ 120 (137)
T 2cwq_A 89 GSEACVKAMAHRAK-----RLGLSKEALLETLKIARQ 120 (137)
T ss_dssp TCHHHHHHHHHHHH-----HHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHH
Confidence 39999999966542 248888888887765433
No 8
>2ouw_A Alkylhydroperoxidase AHPD core; YP_425393.1, carboxymuconolactone decarboxylase family, structural genomics, joint for structural genomics; 1.95A {Rhodospirillum rubrum} SCOP: a.152.1.4
Probab=11.58 E-value=4.6e+02 Score=19.22 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=20.8
Q ss_pred CcchhhHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 026640 176 ATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLG 209 (235)
Q Consensus 176 alCpyC~~s~vvti~lf~~tl~~~~~~~~~~~~~ 209 (235)
.-|.||+..|.-..- -.|...+++.+...
T Consensus 82 n~C~yC~~~H~~~a~-----~~G~s~eei~~l~~ 110 (138)
T 2ouw_A 82 NSCSYCAHSHTAAAR-----AKGMTPAQHAEVLA 110 (138)
T ss_dssp TTCHHHHHHHHHHHH-----HTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-----HcCCCHHHHHHHHH
Confidence 479999999986543 34777777776543
No 9
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=10.24 E-value=2.9e+02 Score=19.06 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=21.1
Q ss_pred cchhhHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 026640 177 TCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQ 211 (235)
Q Consensus 177 lCpyC~~s~vvti~lf~~tl~~~~~~~~~~~~~~~ 211 (235)
-|.||+..|.-... -.|...+++.+.....
T Consensus 49 gc~~c~~~H~~~a~-----~~G~t~~ei~~~~~~~ 78 (96)
T 3bey_A 49 RCDACTRRHAEEAL-----EAGITEGELAEAAAVA 78 (96)
T ss_dssp TCHHHHHHHHHHHH-----TTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----HcCCCHHHHHHHHHHH
Confidence 39999999986542 2477777777765444
No 10
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=8.95 E-value=2.3e+02 Score=24.04 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=19.0
Q ss_pred cchhccCCchhHHHHHHHHHHHHHHHH
Q 026640 106 DYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (235)
Q Consensus 106 ~yA~vfGiPnallGl~~Y~~vl~l~l~ 132 (235)
.++-.+|+|...+|+++|.++..++.+
T Consensus 160 a~~~~~g~p~t~~Gi~g~il~a~v~s~ 186 (204)
T 1col_A 160 AYALSLGVPAIAVGIAGILLAAVVGAL 186 (204)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccchHHHHHHHHHHHHHHHH
Confidence 355567899999999988655555543
Done!