BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026641
         (235 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2
          Length = 300

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 158/226 (69%), Gaps = 5/226 (2%)

Query: 10  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct: 80  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query: 70  SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 129
           SASS +G D   E W ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   
Sbjct: 139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETRE 195

Query: 130 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 189
           + Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct: 196 V-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 254

Query: 190 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 235
            +  + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 255 PAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300


>sp|Q923B6|STEA4_MOUSE Metalloreductase STEAP4 OS=Mus musculus GN=Steap4 PE=2 SV=1
          Length = 470

 Score = 35.0 bits (79), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 138 TPHNVVFRGRKSLIRTPTKLASSV--AYPFAFIKPCGVHGDITLKDINQR--IHSPASTL 193
           T H +V+ G++ L  +P+ L  S+  AY  A + PC V   + LK I     I    + +
Sbjct: 395 TAHTLVYGGKRFL--SPSILRWSLPSAYILALVIPCAV---LVLKCILIMPCIDKTLTRI 449

Query: 194 RQNTEDPSAYPKSAFSGK 211
           RQ  E  S Y +SA +GK
Sbjct: 450 RQGWERNSKYTQSALNGK 467


>sp|B6YQF6|SYE_AZOPC Glutamate--tRNA ligase OS=Azobacteroides pseudotrichonymphae
           genomovar. CFP2 GN=gltX PE=3 SV=1
          Length = 494

 Score = 33.1 bits (74), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 91  DPEMNFSTDELLRDFSGASDIQID---ISEFSNSPPAYDDANILQQHCTKTPHNVVFRGR 147
           DP      ++L+R     S   +D   + + S++ P Y  ANI+  H  K  H  V RG 
Sbjct: 153 DPNQTIIVNDLIRGEMSISSSTLDDKVLYKSSDNLPTYHLANIVDDHLMKITH--VIRGE 210

Query: 148 KSLIRTPTKLASSVAYPFAFIKPCGVHGDITLK 180
           + L  TP  +     + +    P   H  + LK
Sbjct: 211 EWLSSTPLHIILYQYFGWGEKMPVFAHLPLLLK 243


>sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase subunit beta'' OS=Chaetosphaeridium
           globosum GN=rpoC2 PE=3 SV=1
          Length = 1373

 Score = 30.8 bits (68), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 120 NSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGV--HGDI 177
           N+P  + + N L ++  K  +N V    +  I   TK+ASS  Y    I+ CG+  +G I
Sbjct: 563 NNPNIFSETN-LNKYSLKKFYNFVLEKNQKFISNNTKIASSSIYKH-HIENCGIIKYGSI 620

Query: 178 TLKDINQRIHSPASTLRQ 195
            +K          +T+++
Sbjct: 621 QIKPFPSNFDQDLNTIKE 638


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,662,022
Number of Sequences: 539616
Number of extensions: 3547913
Number of successful extensions: 7065
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7058
Number of HSP's gapped (non-prelim): 10
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)