Query 026641
Match_columns 235
No_of_seqs 61 out of 63
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 10:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02817 E3_binding: e3 bindin 27.1 42 0.00092 22.6 1.5 18 165-182 20-37 (39)
2 PF06744 DUF1215: Protein of u 15.9 88 0.0019 24.8 1.4 21 162-186 54-74 (125)
3 cd04412 NDPk7B Nucleoside diph 12.1 1.2E+02 0.0026 24.6 1.2 23 165-188 4-26 (134)
4 TIGR00214 lipB lipoate-protein 11.8 1.1E+02 0.0024 26.8 1.0 20 164-183 142-163 (184)
5 PF03471 CorC_HlyC: Transporte 11.3 1.3E+02 0.0029 21.8 1.1 17 173-189 10-26 (81)
6 PRK13015 3-dehydroquinate dehy 10.6 1.4E+02 0.0029 25.8 1.1 18 172-189 21-38 (146)
7 COG3889 Predicted solute bindi 9.9 1.9E+02 0.004 31.4 2.0 30 155-186 483-513 (872)
8 PF03785 Peptidase_C25_C: Pept 9.6 1.7E+02 0.0038 23.1 1.3 24 209-232 46-69 (81)
9 PRK14341 lipoate-protein ligas 8.6 1.5E+02 0.0033 26.5 0.7 20 163-182 169-190 (213)
10 TIGR01088 aroQ 3-dehydroquinat 8.5 2E+02 0.0043 24.8 1.3 18 172-189 19-36 (141)
No 1
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=27.10 E-value=42 Score=22.58 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=16.0
Q ss_pred eeeeccCCccCCcchHhH
Q 026641 165 FAFIKPCGVHGDITLKDI 182 (235)
Q Consensus 165 F~lvKP~g~~GdvTL~DI 182 (235)
.+-|++.|.+|-||..||
T Consensus 20 l~~v~gtG~~GrI~k~Dv 37 (39)
T PF02817_consen 20 LSQVKGTGPGGRITKEDV 37 (39)
T ss_dssp GGGSSSSSTTSBBCHHHH
T ss_pred cccccccCCCCcEeHHHh
Confidence 347899999999999998
No 2
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=15.89 E-value=88 Score=24.80 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=16.0
Q ss_pred eeeeeeeccCCccCCcchHhHHhhh
Q 026641 162 AYPFAFIKPCGVHGDITLKDINQRI 186 (235)
Q Consensus 162 ayPF~lvKP~g~~GdvTL~DIN~rI 186 (235)
=|||+ -...-||+|.|+++-.
T Consensus 54 RYPF~----~~s~~dv~l~Df~~fF 74 (125)
T PF06744_consen 54 RYPFD----PDSSRDVSLADFARFF 74 (125)
T ss_pred CCCCC----CCCcccCCHHHHHHHh
Confidence 39998 3456789999998654
No 3
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=12.09 E-value=1.2e+02 Score=24.56 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=16.1
Q ss_pred eeeeccCCccCCcchHhHHhhhcC
Q 026641 165 FAFIKPCGVHGDITLKDINQRIHS 188 (235)
Q Consensus 165 F~lvKP~g~~GdvTL~DIN~rIl~ 188 (235)
|++|||+++.-. -+-.|-++|..
T Consensus 4 l~lIKPda~~~~-~~g~Ii~~i~~ 26 (134)
T cd04412 4 VCIIKPHAVSHG-LLGEILQQILD 26 (134)
T ss_pred EEEECchHhhcC-chHHHHHHHHH
Confidence 789999998654 23567666653
No 4
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=11.80 E-value=1.1e+02 Score=26.82 Aligned_cols=20 Identities=40% Similarity=0.853 Sum_probs=16.6
Q ss_pred eeeeeccCCccCC--cchHhHH
Q 026641 164 PFAFIKPCGVHGD--ITLKDIN 183 (235)
Q Consensus 164 PF~lvKP~g~~Gd--vTL~DIN 183 (235)
||..|.|||+.|- ++|++++
T Consensus 142 ~F~~I~PCGl~~~~vTSl~~~~ 163 (184)
T TIGR00214 142 PFSHINPCGYAGREMGSLNQFL 163 (184)
T ss_pred HhccEEcCCCCCCcEeeHHHHc
Confidence 6999999999985 5787764
No 5
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=11.27 E-value=1.3e+02 Score=21.83 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.5
Q ss_pred ccCCcchHhHHhhhcCC
Q 026641 173 VHGDITLKDINQRIHSP 189 (235)
Q Consensus 173 ~~GdvTL~DIN~rIl~p 189 (235)
+.|.++|.|+|+.+-..
T Consensus 10 v~G~~~l~~l~~~~~~~ 26 (81)
T PF03471_consen 10 VSGSTPLDDLNELLGLD 26 (81)
T ss_dssp EETTSBHHHHHHHHTS-
T ss_pred EEecCCHHHHHHHHCcC
Confidence 57999999999998875
No 6
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=10.60 E-value=1.4e+02 Score=25.83 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred CccCCcchHhHHhhhcCC
Q 026641 172 GVHGDITLKDINQRIHSP 189 (235)
Q Consensus 172 g~~GdvTL~DIN~rIl~p 189 (235)
..-|.+||.||++++..-
T Consensus 21 ~iYG~~tl~~i~~~~~~~ 38 (146)
T PRK13015 21 AIYGHETLADVEALCRAA 38 (146)
T ss_pred CcCCCCCHHHHHHHHHHH
Confidence 456899999999999876
No 7
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=9.91 E-value=1.9e+02 Score=31.43 Aligned_cols=30 Identities=43% Similarity=0.489 Sum_probs=24.8
Q ss_pred ccccceeeeeeeeeccCCccCC-cchHhHHhhh
Q 026641 155 TKLASSVAYPFAFIKPCGVHGD-ITLKDINQRI 186 (235)
Q Consensus 155 ~k~~t~vayPF~lvKP~g~~Gd-vTL~DIN~rI 186 (235)
.|...+|.|||-.=| |.||- +||+||=.-|
T Consensus 483 ekAk~kV~~~~~~~k--WhDGq~itlaDil~~~ 513 (872)
T COG3889 483 EKAKIKVTYPFLDAK--WHDGQPITLADILKLI 513 (872)
T ss_pred CeeeeEEEEEecccc--ccCCCccCHHHHHHHH
Confidence 778899999987766 89996 9999996544
No 8
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=9.59 E-value=1.7e+02 Score=23.11 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=14.9
Q ss_pred CCCcceeeeeeeeCCCceeEEEEe
Q 026641 209 SGKPVVGKTKIRTEGGKGSITIMR 232 (235)
Q Consensus 209 SGK~Vv~~Tri~T~gg~GtITI~R 232 (235)
||++++.+++.-|+-|-=++||+|
T Consensus 46 sG~ati~l~~~it~~~~~tlTit~ 69 (81)
T PF03785_consen 46 SGNATINLTNPITDEGTLTLTITA 69 (81)
T ss_dssp TTEEEEE-SS--TT-SEEEEEEE-
T ss_pred CceEEEECCcccCCCceEEEEEEE
Confidence 999999999666654555666665
No 9
>PRK14341 lipoate-protein ligase B; Provisional
Probab=8.62 E-value=1.5e+02 Score=26.54 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=16.0
Q ss_pred eeeeeeccCCccCC--cchHhH
Q 026641 163 YPFAFIKPCGVHGD--ITLKDI 182 (235)
Q Consensus 163 yPF~lvKP~g~~Gd--vTL~DI 182 (235)
-+|..|-|||.+|- ++|+++
T Consensus 169 ~~F~~IvPCGl~~~~vTSl~~~ 190 (213)
T PRK14341 169 SHFSGIVPCGISEHGVTSLVDL 190 (213)
T ss_pred hhhCcEecCCCCCCcEeeHHHh
Confidence 35999999999984 567764
No 10
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=8.51 E-value=2e+02 Score=24.76 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=15.2
Q ss_pred CccCCcchHhHHhhhcCC
Q 026641 172 GVHGDITLKDINQRIHSP 189 (235)
Q Consensus 172 g~~GdvTL~DIN~rIl~p 189 (235)
..-|.+||.||++++..-
T Consensus 19 ~iYG~~tl~di~~~~~~~ 36 (141)
T TIGR01088 19 GVYGSQTLEEIVEIIETF 36 (141)
T ss_pred CcCCCCCHHHHHHHHHHH
Confidence 356899999999999875
Done!