Query 026641
Match_columns 235
No_of_seqs 61 out of 63
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 18:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wkj_A Nucleoside diphosphate 9.9 67 0.0023 25.3 0.2 24 164-188 4-27 (137)
2 2hur_A NDK, nucleoside diphosp 9.4 72 0.0024 25.4 0.2 25 164-189 5-29 (142)
3 3h8k_B Autocrine motility fact 9.2 1.2E+02 0.0042 18.7 1.2 15 8-22 13-27 (28)
4 1nhk_R Nucleoside diphosphate 9.1 75 0.0026 25.3 0.2 25 164-189 5-29 (144)
5 4hr2_A Nucleoside diphosphate 8.8 78 0.0027 25.5 0.2 25 163-188 9-33 (145)
6 3llb_A Uncharacterized protein 8.7 1.2E+02 0.0041 21.3 1.1 17 173-189 13-29 (83)
7 2r2z_A Hemolysin; APC85144, en 8.6 1.2E+02 0.0041 21.5 1.1 17 173-189 20-36 (93)
8 3lae_A UPF0053 protein HI0107; 8.5 1.2E+02 0.0042 21.1 1.1 17 173-189 13-29 (81)
9 2dxe_A Nucleoside diphosphate 8.4 84 0.0029 25.5 0.2 25 163-188 9-33 (160)
10 4dx8_H KREV interaction trappe 8.3 2.3E+02 0.008 24.5 3.0 26 200-225 83-108 (203)
No 1
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=9.87 E-value=67 Score=25.32 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=16.9
Q ss_pred eeeeeccCCccCCcchHhHHhhhcC
Q 026641 164 PFAFIKPCGVHGDITLKDINQRIHS 188 (235)
Q Consensus 164 PF~lvKP~g~~GdvTL~DIN~rIl~ 188 (235)
=|.+|||+++.-.. +-+|-+||..
T Consensus 4 Tl~iIKPdav~~~~-~g~Ii~~ie~ 27 (137)
T 1wkj_A 4 TFVMIKPDGVRRGL-VGEILARFER 27 (137)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred EEEEEChHHhhccc-HHHHHHHHHH
Confidence 38899999986543 4667666643
No 2
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=9.43 E-value=72 Score=25.37 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=18.0
Q ss_pred eeeeeccCCccCCcchHhHHhhhcCC
Q 026641 164 PFAFIKPCGVHGDITLKDINQRIHSP 189 (235)
Q Consensus 164 PF~lvKP~g~~GdvTL~DIN~rIl~p 189 (235)
=|.+|||+++.-.. +-+|-+||...
T Consensus 5 Tl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (142)
T 2hur_A 5 TFSIIKPNAVAKNV-IGNIFARFEAA 29 (142)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEChHHHhccc-HHHHHHHHHHC
Confidence 48999999986543 45777777543
No 3
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=9.22 E-value=1.2e+02 Score=18.72 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhccc
Q 026641 8 CRETYSQIKRRRMLQ 22 (235)
Q Consensus 8 ~~ee~~q~KRRRmLq 22 (235)
.+++..+.-|||||+
T Consensus 13 Rk~~mi~~ARrryl~ 27 (28)
T 3h8k_B 13 RKDELLQQARKRFLN 27 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 345666778888884
No 4
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=9.07 E-value=75 Score=25.35 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=18.0
Q ss_pred eeeeeccCCccCCcchHhHHhhhcCC
Q 026641 164 PFAFIKPCGVHGDITLKDINQRIHSP 189 (235)
Q Consensus 164 PF~lvKP~g~~GdvTL~DIN~rIl~p 189 (235)
=|.+|||+++.-.. +-+|-+||...
T Consensus 5 Tl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (144)
T 1nhk_R 5 TLSIIKPDGLEKGV-IGKIISRFEEK 29 (144)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEChHHHhccc-HHHHHHHHHHC
Confidence 48999999986554 45777777543
No 5
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=8.81 E-value=78 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=17.3
Q ss_pred eeeeeeccCCccCCcchHhHHhhhcC
Q 026641 163 YPFAFIKPCGVHGDITLKDINQRIHS 188 (235)
Q Consensus 163 yPF~lvKP~g~~GdvTL~DIN~rIl~ 188 (235)
.=|++|||+++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~g~Ii~rie~ 33 (145)
T 4hr2_A 9 RTLSIIKPDAVAKNV-IGQIYSRFEN 33 (145)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred HeEEEEChHHhhcCC-HHHHHHHHHH
Confidence 458999999876542 4567777643
No 6
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=8.71 E-value=1.2e+02 Score=21.26 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.8
Q ss_pred ccCCcchHhHHhhhcCC
Q 026641 173 VHGDITLKDINQRIHSP 189 (235)
Q Consensus 173 ~~GdvTL~DIN~rIl~p 189 (235)
++|.+.|.|+|+.+-..
T Consensus 13 v~G~~~l~dl~~~l~~~ 29 (83)
T 3llb_A 13 VKALTPVDAFNDFFGSE 29 (83)
T ss_dssp EETTCBHHHHHHHHCCC
T ss_pred EEccCCHHHHHHHhCCC
Confidence 67999999999998764
No 7
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=8.56 E-value=1.2e+02 Score=21.48 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=15.0
Q ss_pred ccCCcchHhHHhhhcCC
Q 026641 173 VHGDITLKDINQRIHSP 189 (235)
Q Consensus 173 ~~GdvTL~DIN~rIl~p 189 (235)
+.|.++|.|+|+.+-..
T Consensus 20 v~G~~~l~dl~~~l~~~ 36 (93)
T 2r2z_A 20 VQGRMLIDEFNEVFETD 36 (93)
T ss_dssp EETTSBHHHHHHHHTCC
T ss_pred EECCCCHHHHHHHhCCC
Confidence 68999999999998765
No 8
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=8.47 E-value=1.2e+02 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.9
Q ss_pred ccCCcchHhHHhhhcCC
Q 026641 173 VHGDITLKDINQRIHSP 189 (235)
Q Consensus 173 ~~GdvTL~DIN~rIl~p 189 (235)
++|.++|.|+|+.+-..
T Consensus 13 v~g~~~l~dl~~~l~~~ 29 (81)
T 3lae_A 13 IDGSANLRDLNKMFNWE 29 (81)
T ss_dssp EETTCBHHHHHHHHCCC
T ss_pred EEeeCCHHHHHHHhCCC
Confidence 67999999999998765
No 9
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=8.36 E-value=84 Score=25.54 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=17.7
Q ss_pred eeeeeeccCCccCCcchHhHHhhhcC
Q 026641 163 YPFAFIKPCGVHGDITLKDINQRIHS 188 (235)
Q Consensus 163 yPF~lvKP~g~~GdvTL~DIN~rIl~ 188 (235)
.=|.+|||+++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~G~Ii~rie~ 33 (160)
T 2dxe_A 9 RTLVIIKPDAVVRGL-IGEIISRFEK 33 (160)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred eEEEEEChHHhhccc-HHHHHHHHHH
Confidence 458999999986543 4667666643
No 10
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=8.33 E-value=2.3e+02 Score=24.52 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCcceeeeeeeeCCCc
Q 026641 200 PSAYPKSAFSGKPVVGKTKIRTEGGK 225 (235)
Q Consensus 200 p~~~~~~glSGK~Vv~~Tri~T~gg~ 225 (235)
|.++..-|+.||.||...++.-+|++
T Consensus 83 piSp~nqG~~gKRVV~mKkf~ldg~~ 108 (203)
T 4dx8_H 83 PISPANQGIRGKRVVLMKKFPLDGEK 108 (203)
T ss_dssp CC---CCCCCCSCCEEEEEEECCSSC
T ss_pred cCCCCCccccceeEEEeeecccccCC
Confidence 33445679999999999999998643
Done!