Your job contains 1 sequence.
>026642
MSSIKTFSLHLHSNYDRPVLPDPNKSSFLSSPNKQKHHTLSFQQTQKQKFHSLFITNLSQ
SHIAKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLK
EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE
VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026642
(235 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2122462 - symbol:AT4G39470 species:3702 "Arabi... 370 4.6e-34 1
TAIR|locus:2049741 - symbol:AT2G37400 "AT2G37400" species... 213 2.6e-17 1
TAIR|locus:2095037 - symbol:AT3G18420 species:3702 "Arabi... 176 3.8e-13 1
TAIR|locus:2084001 - symbol:AT3G53560 "AT3G53560" species... 172 1.4e-12 1
TAIR|locus:2181848 - symbol:AT5G02590 "AT5G02590" species... 159 6.5e-10 1
TAIR|locus:2074969 - symbol:AT3G09490 "AT3G09490" species... 146 3.8e-08 1
>TAIR|locus:2122462 [details] [associations]
symbol:AT4G39470 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 EMBL:CP002687 GenomeReviews:CT486007_GR
Gene3D:1.25.40.10 EMBL:AY050356 EMBL:BT004514 IPI:IPI00524179
RefSeq:NP_568061.1 UniGene:At.26587 ProteinModelPortal:Q94A56
SMR:Q94A56 IntAct:Q94A56 EnsemblPlants:AT4G39470.1 GeneID:830102
KEGG:ath:AT4G39470 TAIR:At4g39470 eggNOG:NOG294919
HOGENOM:HOG000090754 InParanoid:Q94A56 OMA:EPHEVEW PhylomeDB:Q94A56
ProtClustDB:CLSN2716016 Genevestigator:Q94A56 Uniprot:Q94A56
Length = 341
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 80/160 (50%), Positives = 112/160 (70%)
Query: 69 SSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMG 128
+SL +++L KA I L GS +FLG F S+ +P++ALP S+
Sbjct: 67 TSLLSSKDFVQMLARKAAILLVGSFVFLG-FCSS-KPALALPTATVVSQ----------A 114
Query: 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
+ E E+MFEKLLE EP N+EA+K V+ MRRG+N++A+++V++L+ +EP+EVEWKLL+A
Sbjct: 115 ELEDEKMFEKLLENEPENMEAMKAVVYKKMRRGKNEDAVKYVEKLMKLEPHEVEWKLLEA 174
Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228
LCYE MG+LS AKRL+KDILKE+PLL+RALH L + T
Sbjct: 175 LCYETMGELSKAKRLYKDILKEQPLLIRALHGLAMVMHKT 214
>TAIR|locus:2049741 [details] [associations]
symbol:AT2G37400 "AT2G37400" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0009543 "chloroplast thylakoid
lumen" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009536 "plastid" evidence=IDA]
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 EMBL:CP002685 GO:GO:0009941
EMBL:AC005896 Gene3D:1.25.40.10 ProtClustDB:CLSN2688749
EMBL:BT028932 IPI:IPI00530439 PIR:C84792 RefSeq:NP_565860.1
UniGene:At.37429 ProteinModelPortal:Q9ZUS6 SMR:Q9ZUS6 STRING:Q9ZUS6
PRIDE:Q9ZUS6 EnsemblPlants:AT2G37400.1 GeneID:818316
KEGG:ath:AT2G37400 TAIR:At2g37400 InParanoid:Q9ZUS6 OMA:LKANIFS
PhylomeDB:Q9ZUS6 ArrayExpress:Q9ZUS6 Genevestigator:Q9ZUS6
Uniprot:Q9ZUS6
Length = 333
Score = 213 (80.0 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 54/156 (34%), Positives = 89/156 (57%)
Query: 69 SSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRAS---ENLKEKRDA 125
SS S ++K+ +LK V F A + +FL + L+PS A+ + A+ E+LK+
Sbjct: 53 SSKSQDSKL-SILKSTCVSFTAAAALFLVNL--QLKPSPAIAAPVAATPLMESLKQSNGN 109
Query: 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKL 185
+ + E E E+ L P +VEAL+ +M+ ++ + EA+E + RLI++EP E EW +
Sbjct: 110 VSFEEE-ERSLEEYLASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIELEPEEKEWPM 168
Query: 186 LQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221
L+A + G L +AK F++IL + PL + A H L
Sbjct: 169 LKANIFSYSGDLESAKTGFEEILVKDPLRVEAYHGL 204
>TAIR|locus:2095037 [details] [associations]
symbol:AT3G18420 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00028 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009941 Gene3D:1.25.40.10
EMBL:AB026658 InterPro:IPR005158 Pfam:PF03704 UniGene:At.5474
eggNOG:NOG310753 EMBL:AY037258 EMBL:AY077665 EMBL:AY086309
IPI:IPI00548447 RefSeq:NP_566609.1 UniGene:At.70204
ProteinModelPortal:Q9LS48 SMR:Q9LS48 STRING:Q9LS48 PaxDb:Q9LS48
PRIDE:Q9LS48 ProMEX:Q9LS48 EnsemblPlants:AT3G18420.1 GeneID:821371
KEGG:ath:AT3G18420 TAIR:At3g18420 HOGENOM:HOG000153087
InParanoid:Q9LS48 OMA:GYLRTPL PhylomeDB:Q9LS48
ProtClustDB:CLSN2717826 Genevestigator:Q9LS48 Uniprot:Q9LS48
Length = 316
Score = 176 (67.0 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 48/155 (30%), Positives = 80/155 (51%)
Query: 68 RSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALM 127
R+S S +N EK F A S I +G+ S LP K + EK +
Sbjct: 39 RAS-SNQNSSGYCFPEKFKSF-AKSAILIGAAVSMTGKFSTLPVKAESPVTTIEKTYEEV 96
Query: 128 GKSEVEEM--FEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKL 185
+ ++ E+ +LL+ P VE L+ ++Q + +G ++EAL+ ++RL+ +P E EWK
Sbjct: 97 KEEKLSEITPLSELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETEWKF 156
Query: 186 LQALCYELMGKLSTAKRLFKDILKERPLLLRALHD 220
L A MG+ A+++F++IL+ PL AL +
Sbjct: 157 LMARLLGEMGRPENARQMFEEILQRNPLSFEALFE 191
>TAIR|locus:2084001 [details] [associations]
symbol:AT3G53560 "AT3G53560" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009543 "chloroplast thylakoid
lumen" evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 EMBL:CP002686 GO:GO:0009941 Gene3D:1.25.40.10
UniGene:At.19871 GO:GO:0009535 EMBL:AY099742 EMBL:BT000274
IPI:IPI00532408 RefSeq:NP_566986.1 ProteinModelPortal:Q8L606
SMR:Q8L606 IntAct:Q8L606 STRING:Q8L606 PaxDb:Q8L606 PRIDE:Q8L606
ProMEX:Q8L606 EnsemblPlants:AT3G53560.1 GeneID:824524
KEGG:ath:AT3G53560 eggNOG:euNOG30307 OMA:SLMEVKI
ProtClustDB:CLSN2688749 ArrayExpress:Q8L606 Genevestigator:Q8L606
Uniprot:Q8L606
Length = 340
Score = 172 (65.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 60/201 (29%), Positives = 95/201 (47%)
Query: 35 QKHHT---LSFQQTQKQKF-HSLF---ITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVI 87
Q HH LSF T F +LF I +S A I SS +N I + K
Sbjct: 8 QLHHQPFHLSFTHTSSSTFPKNLFKSSIQPISSLKSASIKASSSKFQNSITPLPKSTPFR 67
Query: 88 FLAGSVIFLGSFGS----NLR---PSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLL 140
+ I L + + NL P++A P + +++ K + + E E ++ L
Sbjct: 68 LFKSTCITLTTAAALLLANLHLKSPAIAAP--IAPPPSVESKENVTL--EEEERALDEHL 123
Query: 141 EKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200
P +V+AL+ +M+ ++ + EA+E + RLI +EP E EW +L+A + G L A
Sbjct: 124 ITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRLIKLEPEEKEWPVLKANIFTYSGDLDLA 183
Query: 201 KRLFKDILKERPLLLRALHDL 221
K F++IL + PL + A H L
Sbjct: 184 KTGFEEILAKDPLRVEAYHGL 204
>TAIR|locus:2181848 [details] [associations]
symbol:AT5G02590 "AT5G02590" species:3702 "Arabidopsis
thaliana" [GO:0009543 "chloroplast thylakoid lumen" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 Pfam:PF13174 PROSITE:PS50005
PROSITE:PS50293 GO:GO:0005886 EMBL:CP002688 Gene3D:1.25.40.10
ProtClustDB:CLSN2688749 UniGene:At.33398 EMBL:AY085220
IPI:IPI00535964 RefSeq:NP_568104.1 ProteinModelPortal:Q8LEV0
SMR:Q8LEV0 PaxDb:Q8LEV0 PRIDE:Q8LEV0 EnsemblPlants:AT5G02590.1
GeneID:831857 KEGG:ath:AT5G02590 TAIR:At5g02590 eggNOG:NOG310753
InParanoid:Q8LEV0 OMA:LVMAYSE PhylomeDB:Q8LEV0
Genevestigator:Q8LEV0 Uniprot:Q8LEV0
Length = 326
Score = 159 (61.0 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 46/164 (28%), Positives = 76/164 (46%)
Query: 64 AKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVAL-----PGKMRASEN 118
+++ R+S N LK V + + S + +P A P + +
Sbjct: 40 SRVIRASSFSSNPKPSFLKTTCVTLTTAAALLSASLHLSTKPVTAATLVSPPPPPSTAAD 99
Query: 119 LKEKRDALMGKSEVEEM-FEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE 177
L + + K E EE EK L K P +VEAL+ +M+ + ALE + RLI+I+
Sbjct: 100 LTSDQISSRPKEEEEEAALEKHLTKNPNDVEALQSLMKIKFQTKNIDHALEILNRLIEIQ 159
Query: 178 PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221
P E EW++L+A G +A + F+++L + P + A H L
Sbjct: 160 PEEQEWRILKAQVQTYGGDFDSATKGFEEVLSKDPFRVEAYHGL 203
>TAIR|locus:2074969 [details] [associations]
symbol:AT3G09490 "AT3G09490" species:3702 "Arabidopsis
thaliana" [GO:0009543 "chloroplast thylakoid lumen" evidence=ISS]
[GO:0019684 "photosynthesis, light reaction" evidence=TAS]
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028 EMBL:CP002686
GenomeReviews:BA000014_GR EMBL:AC016661 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 GO:GO:0009543 GO:GO:0019684
EMBL:BT029519 IPI:IPI00518914 RefSeq:NP_187560.1 UniGene:At.28776
UniGene:At.69028 ProteinModelPortal:Q9SF54 SMR:Q9SF54 PaxDb:Q9SF54
PRIDE:Q9SF54 DNASU:820106 EnsemblPlants:AT3G09490.1 GeneID:820106
KEGG:ath:AT3G09490 TAIR:At3g09490 HOGENOM:HOG000148619
InParanoid:Q9SF54 OMA:IRICEEL PhylomeDB:Q9SF54
ProtClustDB:CLSN2915685 Genevestigator:Q9SF54 Uniprot:Q9SF54
Length = 334
Score = 146 (56.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 35/107 (32%), Positives = 60/107 (56%)
Query: 115 ASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLI 174
AS KR A+ + VE EK LE + +V AL ++ + + ++++A+ F+ RLI
Sbjct: 81 ASFYFVNKRAAMTPVAVVETTLEKHLETQSNDVNALSLLTEIKFKSDKHEQAIVFLDRLI 140
Query: 175 DIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221
+IEP E +W ++A GK +A F++IL++ P+ + A H L
Sbjct: 141 EIEPYERKWPAMKARILSYHGKSESAIEAFEEILEKDPIRVDAYHYL 187
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 235 235 0.00088 113 3 11 22 0.41 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 591 (63 KB)
Total size of DFA: 157 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.27u 0.10s 26.37t Elapsed: 00:00:01
Total cpu time: 26.27u 0.10s 26.37t Elapsed: 00:00:01
Start: Fri May 10 23:35:13 2013 End: Fri May 10 23:35:14 2013