BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026642
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKLLQA 188
E E ++K LE +P N EA + ++G EA+E+ ++ ++++PN E W L
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85
Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
Y+ G A ++ L+ P A +LG
Sbjct: 86 AYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGN 119
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 143 EPRN-VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKLLQALCYELMGKLSTA 200
+P N EA + ++G EA+E+ ++ ++++PN E W L Y+ G A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEA 62
Query: 201 KRLFKDILKERPLLLRALHDLGR 223
++ L+ P A ++LG
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGN 85
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKLLQA 188
E E ++K LE +PR+ EA + ++G EA+E+ ++ ++++P E W L
Sbjct: 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77
Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
Y+ G A ++ L+ P A ++LG
Sbjct: 78 AYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLG 110
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP 178
E E ++K LE +PR+ EA + ++G EA+E+ ++ ++++P
Sbjct: 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKLLQA 188
E E ++K LE P N EA + ++G EA+E+ ++ +++ PN E W L
Sbjct: 26 DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGN 85
Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
Y+ G A ++ L+ P A +LG
Sbjct: 86 AYYK-QGDYDEAIEYYQKALELYPNNAEAKQNLGN 119
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE 182
E E ++K LE +P N EA + ++G EA+E+ ++ ++++PN E
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%)
Query: 134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL 193
E ++K LE +P N A + ++G ++A+E+ ++ ++++PN + + Y
Sbjct: 30 EYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYK 89
Query: 194 MGKLSTAKRLFKDILKERPLLLRALHDLG 222
G A ++ L+ P +A +LG
Sbjct: 90 QGDYQKAIEDYQKALELDPNNAKAKQNLG 118
>pdb|3URZ|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_03105)
From Bacteroides Ovatus Atcc 8483 At 2.19 A Resolution
pdb|3URZ|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_03105)
From Bacteroides Ovatus Atcc 8483 At 2.19 A Resolution
Length = 208
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN 179
+++LL+K P NV+ L+ + + RG+ K+AL ++++ +E +
Sbjct: 76 FYKELLQKAPNNVDXLEACAEXQVCRGQEKDALRXYEKILQLEAD 120
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP 178
E E ++K LE +PR+ EA + ++G EA+E+ ++ ++++P
Sbjct: 21 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|2W9Y|A Chain A, The Structure Of The Lipid Binding Protein Ce-Far-7 From
Caenorhabditis Elegans
Length = 140
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRR--GRNKEALEFVKRLIDIEPNEVEWKLLQ 187
S+ EM +++ +K P + L V++GN +R G + A+E+ K+LI + +
Sbjct: 46 SQCGEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAAVEYAKKLIHM--------VTT 97
Query: 188 ALCYELMGKL---STAKRLFKD 206
LC +GK + AKRL ++
Sbjct: 98 TLCSLTVGKPIDDADAKRLHQE 119
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 108 ALPGKMRASENLKEKRDALMGKS---EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNK 164
++ G ++S+ L K D L +S +V + K+LE +P N++ + + G
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356
Query: 165 EALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF 204
+ L+D P + L + Y + K+S A+R F
Sbjct: 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396
>pdb|3SZE|A Chain A, Crystal Structure Of The Passenger Domain Of The E. Coli
Autotransporter Espp
Length = 968
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 28 FLSSPNKQKHHTLSFQQTQKQKFHSLFITNLSQSHIAKIPRSSLSPENKIMKV 80
F S N +K HTL+ + TNLS+S ++ + LS EN I+ V
Sbjct: 829 FTDSANNKKFHTLTVDELATSNSAYAMRTNLSESDKLEV-KKHLSGENNILLV 880
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 111 GKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEAL--- 167
GK+ ++E L+ +D L + + E E+L++ P N++ + V+ G N
Sbjct: 51 GKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALGENTYTFHPK 110
Query: 168 -EFVKRLIDIEPNEVEWK 184
E RLI I P+ + ++
Sbjct: 111 TEEAIRLIAITPSIIAYR 128
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 164 KEALE-FVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208
+ ALE + RL +PN + K A CY GK A+ L+K+IL
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 164 KEALE-FVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208
+ ALE + RL +PN + K A CY GK A+ L+K+IL
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|2LGZ|A Chain A, Solution Structure Of Stt3p
Length = 273
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 58 LSQSHIAKIPRSSLSPENKIMKVLKEKAVIFL 89
+ +HIA + +++ SPE K ++LKE V ++
Sbjct: 93 WNNTHIAIVGKANASPEEKSYEILKEHDVDYV 124
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 38/89 (42%)
Query: 134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL 193
E +K + + + EA ++ N + A++ ++R I + + L Y+
Sbjct: 60 ESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS 119
Query: 194 MGKLSTAKRLFKDILKERPLLLRALHDLG 222
MG+ A ++ + +P +RA +G
Sbjct: 120 MGEHDKAIEAYEKTISIKPGFIRAYQSIG 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,218,574
Number of Sequences: 62578
Number of extensions: 225639
Number of successful extensions: 765
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 55
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)