BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026642
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 110 PGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEF 169
P A NL +L S+ EE + + L K R E L + GR+KEALE
Sbjct: 707 PSHHVAVVNLGRLYRSLGENSKAEEWYRRAL-KVARTAEVLSPLGALYYNTGRHKEALEV 765
Query: 170 VKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRA 217
+ + ++P++ E +L A +MG+ A+++ I+ E P L
Sbjct: 766 YREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLEC 813
>sp|Q61371|IFT88_MOUSE Intraflagellar transport protein 88 homolog OS=Mus musculus
GN=Ift88 PE=1 SV=2
Length = 824
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 109 LPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALE 168
+P +A L E D+ KS+ + + + P N+E ++ + + ++A++
Sbjct: 582 VPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQ 641
Query: 169 FVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP-------LLLRALHDL 221
+ +R I+P +V+W+L+ A C+ G A +K+I ++ P L+R D+
Sbjct: 642 YFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDI 701
Query: 222 G 222
G
Sbjct: 702 G 702
>sp|O94441|YPP1_SCHPO Putative cargo-transport protein ypp1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ypp1 PE=1 SV=1
Length = 862
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 136 FEKLLEKEPRNVEAL-KVVMQGNMRRGRNKEALEFVKRLIDIEPNE--VEWKLLQALCYE 192
++K LEK+P N AL + MQ + RR +A++ V+RL+++ P V W LL LC
Sbjct: 483 YQKCLEKQPTNTNALFHLAMQYSERRAIT-DAMQIVRRLLEVNPKYSIVSWHLL-VLCVS 540
Query: 193 LMGKLSTAKRLFKDILK 209
+ + +L + +
Sbjct: 541 CSEQYAAGIKLIDSVFE 557
>sp|O23052|Y1515_ARATH Uncharacterized TPR repeat-containing protein At1g05150
OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1
Length = 808
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 127 MGKSE-VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKL 185
MG+ E E+F++ ++ +P +V+AL + M GR + A E R++ + PN +L
Sbjct: 391 MGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLTVWPNHWRAQL 450
Query: 186 LQALCYELMGKLSTAKRLFKDILK 209
+A+ G+ AKR K+ LK
Sbjct: 451 NKAVSLLGAGETEEAKRALKEALK 474
>sp|Q13099|IFT88_HUMAN Intraflagellar transport protein 88 homolog OS=Homo sapiens
GN=IFT88 PE=2 SV=2
Length = 833
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 109 LPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALE 168
+P + L E D KS+ + + + P N+E ++ + + ++A++
Sbjct: 591 IPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQ 650
Query: 169 FVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP-------LLLRALHDL 221
+ +R I+P +V+W+L+ A C+ G A +KD ++ P L+R DL
Sbjct: 651 YFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLCTDL 710
Query: 222 G 222
G
Sbjct: 711 G 711
>sp|Q8S8L9|Y2245_ARATH Uncharacterized TPR repeat-containing protein At2g32450
OS=Arabidopsis thaliana GN=At2g32450 PE=1 SV=1
Length = 802
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 127 MGKSE-VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKL 185
MG+ E E+F++ ++ +P +V+AL + M GR + A E R++ + PN +L
Sbjct: 386 MGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQL 445
Query: 186 LQALCYELMGKLSTAKRLFKDILK 209
+A+ G+ AKR K+ LK
Sbjct: 446 NKAVSLLGAGETEEAKRALKEALK 469
>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1
Length = 314
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQAL 189
E + +K+ E+ +++ AL ++Q + GR +ALE+ K+ + + P++ L + +
Sbjct: 198 GEALKCLKKVFERNNKDIRALMYIIQILIYLGRLNQALEYTKKALKLNPDDPLLYLYKGI 257
Query: 190 CYELMGKLSTAKRLFKDILKERP 212
+GK + A + F +L+ P
Sbjct: 258 ILNKLGKYNEAIKYFDKVLEINP 280
>sp|Q57711|Y941_METJA TPR repeat-containing protein MJ0941 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0941 PE=4 SV=3
Length = 338
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 125 ALMGKSEVEE---MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV 181
AL K E++E FE+LL E +N V Q G EAL+ + + IE +
Sbjct: 72 ALSAKGEIKEAITTFEELLSYESKNPITWVFVGQLYGMSGNCDEALKCYNKALGIENRFL 131
Query: 182 EWKLLQALCYELMGKLSTAKRLFKDILKERPLLL-------RALHDLGRY 224
LL+ +C E +G+ + + ++L P + L LGRY
Sbjct: 132 SAFLLKTICLEFLGEYDELLKCYNEVLTYTPNFVPMWVKKAEILRKLGRY 181
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR 202
EPR +E ++ R G EA EF+ + I+P++V WK L C + G + KR
Sbjct: 408 EPR-IEHYGCMVDLLGRSGLLDEAEEFILNM-PIKPDDVIWKALLGAC-RMQGNVEMGKR 464
Query: 203 LFKDILKERPLLLRALHDLGRYVSMT 228
+ ++ P HD G YV+++
Sbjct: 465 VANILMDMVP------HDSGAYVALS 484
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 33.9 bits (76), Expect = 0.91, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 136 FEKLLEKEPR----NVEALKVVMQGNMRRGRNKEALEFVKRLID--IEPNEVEWK-LLQA 188
FE L E R NV +M+G R G+ +A+ +KR++D + P+ V + L+
Sbjct: 391 FELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDG 450
Query: 189 LCYELMGKLSTAKRLFKDI 207
LC E G ++TA +L +
Sbjct: 451 LCRE--GHMNTAYKLLSSM 467
>sp|Q60462|IFIT2_CRIGR Interferon-induced protein with tetratricopeptide repeats 2
OS=Cricetulus griseus GN=IFIT2 PE=2 SV=1
Length = 468
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRG---RNKEALEFVKRLIDIEPNEVEWKLLQA 188
V+ FEK LEK+P+N E N R + A++ +K+ I + PN K+L A
Sbjct: 157 VKVCFEKALEKDPKNPEFTSGWAISNYRLDFWPAQQNAVDSLKQAIRMSPNSPYVKVLLA 216
Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228
L E M + + K L ++ L+E P L R+ T
Sbjct: 217 LKLE-MNQENQGKELVEEALREAPGETDVLRSAARFYYKT 255
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 130 SEVEEMFEKLLEKEPR-NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP 178
+E+E++ E + + + R N K+V+ G R G+ EA++FV ++ +P
Sbjct: 753 AEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDP 802
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID--IEPNEVEWK-LLQA 188
+E M E L + + A+ +++G +RG+ +EAL VKR++D + PN + L+ +
Sbjct: 317 LEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDS 376
Query: 189 LC-----------YELMGKL-----STAKRLFKDILKERPLLLRALHDLGRYVSMTLQI 231
LC ++ MGK+ + D+ R L AL LG V L++
Sbjct: 377 LCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKL 435
>sp|Q6C0U8|CYM1_YARLI Mitochondrial presequence protease OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=CYM1 PE=3 SV=1
Length = 990
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 118 NLKEKRD-------ALMGKSEVEEMFE-----KLLEKEPRNVEALKVVMQGNMRRGRNKE 165
N++EK D A + +S+ EE+FE + +++EP N++ L + ++ R + +
Sbjct: 496 NVQEKEDEILTDKLAKLTESDKEEIFETGANLEKMQEEPENLDCLPTLHVSDIPRSKPRV 555
Query: 166 ALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
ALE K P ++W+L +S+ + L + PL +L LG
Sbjct: 556 ALEHTKN-----PYPIQWRLAPTNGLTYFHSISSLEGLPHEYYPFLPLFTSSLTFLG 607
>sp|A4YI68|PURL_METS5 Phosphoribosylformylglycinamidine synthase 2 OS=Metallosphaera
sedula (strain ATCC 51363 / DSM 5348) GN=purL PE=3 SV=1
Length = 702
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 163 NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALH--- 219
+K +E V+R++ EP E EWKL+ AL E ++K + + P ++ ++
Sbjct: 6 SKTEMEVVRRVLGREPKEAEWKLVDALWSEHC-SYKSSKVFLRSLPSTGPNVIMSVEDWQ 64
Query: 220 -----DLGRYVSMTLQIQS 233
D+G +++ L+++S
Sbjct: 65 DAGAVDVGDGLALVLKVES 83
>sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400
OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1
Length = 610
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 149 ALKVVMQGNMRRGRNKEALEFVKRL----IDIEPNEVEWKLLQALCYELMGKLSTAKRLF 204
KV+++G +R GR A+ FV L +DI P EV L+ +LC E GK AK L
Sbjct: 378 TCKVIVEGFVREGRLLSAVNFVVELRRLKVDI-PFEVCDFLIVSLCQE--GKPFAAKHLL 434
Query: 205 KDILKE 210
I++E
Sbjct: 435 DRIIEE 440
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID--IEPNEVEWKLLQ 187
SE E +F L EK +V + +M G EA+E + + + + + + +
Sbjct: 707 SEAESIFNALREKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSDCTSFNQVM 766
Query: 188 ALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRY 224
A CY G+LS LF ++L ER LLL D G +
Sbjct: 767 A-CYAADGQLSECCELFHEMLVERKLLL----DWGTF 798
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 159 RRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP------ 212
R GR EA F+ + +EP+ V WK L + C + G + A++ ++ILK P
Sbjct: 622 RAGRLNEAERFIDEM-KLEPDVVVWKTLLSAC-KTQGNVHLAQKAAENILKIDPFNSTAH 679
Query: 213 LLLRALH 219
+LL ++H
Sbjct: 680 VLLCSMH 686
>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SEC OS=Arabidopsis
thaliana GN=SEC PE=2 SV=1
Length = 977
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 145 RNVEALKVVMQ-----GNM-----RRGRNKEALEFVKRLIDIEPNEVE-WKLLQALCYEL 193
RN EAL++ Q GNM +G A+ + I++ PN + W L A Y
Sbjct: 109 RNEEALRIQPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNL-ASAYMR 167
Query: 194 MGKLSTAKRLFKDILKERPLLLRALHDLG 222
G+LS A + + L PLL+ A +LG
Sbjct: 168 KGRLSEATQCCQQALSLNPLLVDAHSNLG 196
>sp|O06917|Y263_METJA TPR repeat-containing protein MJ0263 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0263 PE=4 SV=1
Length = 320
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 164 KEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER 211
+EAL ++ + ++ PN+VE K AL YE + K+ A +++ I+ +
Sbjct: 233 EEALNYITKYLEKFPNDVEAKFYLALIYENLNKVDDALKIYDKIISNK 280
>sp|Q5BIZ0|MFSD4_XENTR Major facilitator superfamily domain-containing protein 4
OS=Xenopus tropicalis GN=mfsd4 PE=2 SV=1
Length = 503
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 76 KIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMGKSEVEEM 135
+++K+ ++ + IFL F+G FG+ L P +A P + N + G +E +
Sbjct: 129 QLVKIYQQDSAIFLQVLHFFVG-FGALLSPLIADP--FLSDTNCIQSNATQNGSRNLEHI 185
Query: 136 FEKLLEKEPRNVEALKVVMQGNM 158
L+ PRNV + +QG +
Sbjct: 186 RNSLVPHHPRNVSHYVLPLQGAL 208
>sp|P55727|Y4YS_RHISN Uncharacterized protein y4yS OS=Rhizobium sp. (strain NGR234)
GN=NGR_a00520 PE=4 SV=1
Length = 182
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLL 186
+G+ E L++ P NV+A + + + + R EAL+ + ++ + P+ +
Sbjct: 69 VGEDAQERALRDDLKQHPGNVDAAIRLTKALVAQKRPHEALQVLDNVLVVTPDNLRALNA 128
Query: 187 QALCYELMGKLSTAKRLFKDILKERP 212
+A+ ++ G+ A+ L++ L+ P
Sbjct: 129 KAVILDIEGRHDAAQELYRQALETNP 154
>sp|Q9LEM8|NAC2_CHLRE PsbD mRNA maturation factor Nac2, chloroplastic OS=Chlamydomonas
reinhardtii GN=NAC2 PE=1 SV=1
Length = 1385
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP--------NEVEWKLL 186
+FE+ L+ P N + + + + G +EA E R + I+P N +W +
Sbjct: 1041 LFERALDAHPLNTKIINMYARFEAEEGSYREAAELYDRALQIDPLSPGPGVHNRADWASM 1100
Query: 187 QALCYELMGKLSTAKRLFKDILKERP 212
+ +G A++L ++ L+ P
Sbjct: 1101 ET----DLGNTGLARQLLEEGLEAHP 1122
>sp|Q91785|KI15A_XENLA Kinesin-like protein KIF15-A OS=Xenopus laevis GN=kif15-a PE=1 SV=1
Length = 1388
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 140 LEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST 199
L+K N+E L V R +N+E + +L + E +E + LQ +C EL +L
Sbjct: 1163 LQKRNTNLEIL-VSELNEERTSKNEEIIRLKMQLCETENMRLEIQNLQGMCKELKSQLEN 1221
Query: 200 AKRLFKDILKERPLLLRALHDLGRYV 225
+ KD ++P + DL R +
Sbjct: 1222 CNNVMKDSNDQKP---SDMQDLKREI 1244
>sp|Q9VF81|TMTC4_DROME Transmembrane and TPR repeat-containing protein CG5038
OS=Drosophila melanogaster GN=CG5038 PE=1 SV=1
Length = 705
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE 192
E++F+ L+ P N + + + G N +A + R I++ PN + Y
Sbjct: 430 EQLFKSALQVCPDNAKVHYNIARLATDMGNNTKAFQHYHRAIELYPNYESALMNLGNLYR 489
Query: 193 LMGKLSTAKRLFKDILKERPLLLRALHDLG 222
G+LSTA+ + L+ P A +LG
Sbjct: 490 EHGQLSTAEEYIRLALQAYPAFPAAWMNLG 519
>sp|Q2M146|ST7_DROPS Protein ST7 homolog OS=Drosophila pseudoobscura pseudoobscura
GN=GA17575 PE=3 SV=2
Length = 541
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 155 QGNMRRG---RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER 211
QG + G R+ L ++KR + A+C +GKL A ++F+D+ KE
Sbjct: 243 QGAIADGMHRRDTNVLIYIKRRL-------------AMCARKLGKLKEAAKMFRDLTKEI 289
Query: 212 PLLLRALHDLGRYVSMTLQIQS 233
P ++ L+ + L++Q+
Sbjct: 290 PSIMSVLNIHENLIETLLEMQA 311
>sp|P31759|FRZF_MYXXA Protein methyltransferase FrzF OS=Myxococcus xanthus GN=frzF PE=4
SV=1
Length = 593
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRA 217
M +G A+ V+RL+ EP++++ L + L G++ A+ F ++ PL + A
Sbjct: 434 MAQGDFSAAIAGVQRLLADEPSDLDGLLTLGNLFSLTGRIPEAREAFAQAIQREPLCVEA 493
>sp|Q9VPB1|ST7_DROME Protein ST7 homolog OS=Drosophila melanogaster GN=CG3634 PE=2 SV=1
Length = 537
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 155 QGNMRRG---RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER 211
QG + G R+ L ++KR + A+C +GKL A ++F+D+ KE
Sbjct: 239 QGAIADGMHRRDTNVLIYIKRRL-------------AMCARKLGKLKEAAKMFRDLTKEI 285
Query: 212 PLLLRALHDLGRYVSMTLQIQS 233
P ++ L+ + L++Q+
Sbjct: 286 PSIMSVLNIHENLIETLLEMQA 307
>sp|Q498L9|KI15B_XENLA Kinesin-like protein KIF15-B OS=Xenopus laevis GN=kif15-b PE=1 SV=1
Length = 1387
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 159 RRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL 218
R +N+E ++ +L + E +E + LQ +C EL +L K+ KD +++P +
Sbjct: 1180 RTLKNEEIIKLKMQLCETENMHLEIQNLQGICKELKSQLENCKKGMKDGNEQKP---SDM 1236
Query: 219 HDLGRYV 225
DL R +
Sbjct: 1237 QDLKREI 1243
>sp|Q4V3B3|BGL28_ARATH Beta-glucosidase 28 OS=Arabidopsis thaliana GN=BGLU28 PE=2 SV=1
Length = 582
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 147 VEALKVVMQGNMRRGRNKEALEFVKRLID------IEPNEV--EWKLLQALCYELMGKLS 198
+ +++ G ++ G NKE +EF K LID IEP+ W Q+L E G LS
Sbjct: 108 ISWARLIPSGKVKDGVNKEGVEFYKALIDELVANGIEPSMTLYHWDHPQSLEDEYGGFLS 167
>sp|Q12797|ASPH_HUMAN Aspartyl/asparaginyl beta-hydroxylase OS=Homo sapiens GN=ASPH PE=1
SV=3
Length = 758
Score = 31.2 bits (69), Expect = 7.1, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 111 GKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR----GRNKEA 166
GK + ++L EKR + E ++++ + LK+ ++ R G + +
Sbjct: 380 GKAQCEDDLAEKRRSNEVLRGAIETYQEVASLPDVPADLLKLSLKRRSDRQQFLGHMRGS 439
Query: 167 LEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP 212
L ++RL+ + PN+ K + Y L+G AK++++++L P
Sbjct: 440 LLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTP 485
>sp|O14879|IFIT3_HUMAN Interferon-induced protein with tetratricopeptide repeats 3 OS=Homo
sapiens GN=IFIT3 PE=1 SV=1
Length = 490
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN 179
++E E+ E+ LEK P + L+ + R+G +A+E +R+++ PN
Sbjct: 223 EAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPN 273
>sp|Q921D9|GRHL1_MOUSE Grainyhead-like protein 1 homolog OS=Mus musculus GN=Grhl1 PE=1
SV=1
Length = 618
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 23/106 (21%)
Query: 52 SLFITNLSQ-SHIAKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALP 110
+ TNL + SH+ +P L E GSV+ G FG+ V P
Sbjct: 476 DVHFTNLQRGSHVLSLPSEELEGE----------------GSVLKRGPFGTEDDFGVPPP 519
Query: 111 GKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQG 156
K+ +E + KR L + E EE+F+ L+ K P +LK +M+
Sbjct: 520 AKLTRTE--EPKRVLLYVRKESEEVFDALMLKTP----SLKGLMEA 559
>sp|A5A6J9|IFIT3_PANTR Interferon-induced protein with tetratricopeptide repeats 3 OS=Pan
troglodytes GN=IFIT3 PE=2 SV=1
Length = 490
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN 179
++E E+ E+ LEK P + L+ + R+G +A+E +R+++ PN
Sbjct: 223 EAEGEQFVEEALEKAPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPN 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,977,628
Number of Sequences: 539616
Number of extensions: 3041288
Number of successful extensions: 12046
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 11961
Number of HSP's gapped (non-prelim): 139
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)