Query 026642
Match_columns 235
No_of_seqs 203 out of 2382
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 10:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.7 5.5E-15 1.2E-19 117.3 14.9 109 121-229 32-140 (144)
2 PRK10370 formate-dependent nit 99.6 3E-14 6.6E-19 118.9 18.8 108 126-233 52-162 (198)
3 KOG0553 TPR repeat-containing 99.6 1.9E-14 4E-19 124.8 12.2 107 126-232 94-200 (304)
4 PRK11189 lipoprotein NlpI; Pro 99.5 7.6E-13 1.6E-17 116.8 17.6 90 126-215 77-166 (296)
5 PLN03088 SGT1, suppressor of 99.5 4.4E-13 9.6E-18 121.3 16.1 107 122-228 11-117 (356)
6 PRK15359 type III secretion sy 99.5 1E-13 2.2E-18 110.0 10.5 98 133-233 13-110 (144)
7 TIGR03302 OM_YfiO outer membra 99.5 3.1E-12 6.8E-17 108.2 16.9 96 123-218 43-152 (235)
8 TIGR02521 type_IV_pilW type IV 99.5 3.6E-12 7.7E-17 104.5 16.6 108 123-230 41-150 (234)
9 TIGR02552 LcrH_SycD type III s 99.5 8.8E-13 1.9E-17 102.0 11.1 99 119-217 23-121 (135)
10 COG3063 PilF Tfp pilus assembl 99.4 3.1E-12 6.7E-17 107.5 14.6 109 122-231 44-155 (250)
11 TIGR02552 LcrH_SycD type III s 99.4 4.3E-12 9.2E-17 98.1 14.3 100 134-233 4-103 (135)
12 PF13414 TPR_11: TPR repeat; P 99.4 6.5E-13 1.4E-17 91.5 8.5 68 145-212 1-69 (69)
13 TIGR00990 3a0801s09 mitochondr 99.4 2.2E-12 4.8E-17 124.2 14.5 104 127-230 345-448 (615)
14 TIGR00990 3a0801s09 mitochondr 99.4 5.1E-12 1.1E-16 121.7 16.1 111 122-232 374-484 (615)
15 PRK12370 invasion protein regu 99.4 2.6E-12 5.7E-17 122.5 13.7 95 129-223 320-414 (553)
16 PRK15363 pathogenicity island 99.4 1E-11 2.2E-16 99.4 14.3 97 115-211 37-133 (157)
17 PRK12370 invasion protein regu 99.4 7.1E-12 1.5E-16 119.5 15.7 111 122-232 347-458 (553)
18 COG4235 Cytochrome c biogenesi 99.4 1.3E-11 2.7E-16 107.5 15.1 106 127-232 136-244 (287)
19 KOG4626 O-linked N-acetylgluco 99.4 3.3E-12 7.1E-17 119.7 11.9 102 129-230 302-403 (966)
20 KOG4626 O-linked N-acetylgluco 99.4 2.9E-12 6.3E-17 120.0 11.0 112 119-230 360-471 (966)
21 PRK15179 Vi polysaccharide bio 99.4 1.6E-11 3.4E-16 119.6 14.9 118 117-234 90-207 (694)
22 PRK09782 bacteriophage N4 rece 99.3 2.3E-11 4.9E-16 122.5 16.1 108 125-233 588-695 (987)
23 PRK11189 lipoprotein NlpI; Pro 99.3 1.7E-11 3.6E-16 108.2 13.5 104 129-232 42-149 (296)
24 PRK15363 pathogenicity island 99.3 9.9E-12 2.1E-16 99.5 10.3 94 139-232 26-120 (157)
25 PRK10370 formate-dependent nit 99.3 4.3E-11 9.3E-16 99.9 14.1 92 123-214 83-177 (198)
26 PF13432 TPR_16: Tetratricopep 99.3 1.1E-11 2.3E-16 84.6 8.0 64 152-215 2-65 (65)
27 TIGR02521 type_IV_pilW type IV 99.3 1.3E-10 2.8E-15 95.2 15.5 112 121-232 73-186 (234)
28 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.3E-10 2.8E-15 87.0 14.2 97 123-219 12-114 (119)
29 PF13429 TPR_15: Tetratricopep 99.3 1.8E-11 3.8E-16 106.6 10.3 114 121-234 154-267 (280)
30 KOG1155 Anaphase-promoting com 99.3 2.6E-11 5.7E-16 110.4 11.4 105 129-233 346-450 (559)
31 COG5010 TadD Flp pilus assembl 99.3 9.6E-11 2.1E-15 100.0 14.0 114 119-232 106-219 (257)
32 PRK15174 Vi polysaccharide exp 99.3 8.3E-11 1.8E-15 114.4 15.5 107 125-231 224-334 (656)
33 PRK09782 bacteriophage N4 rece 99.3 8.7E-11 1.9E-15 118.3 15.1 113 119-231 615-727 (987)
34 PF12895 Apc3: Anaphase-promot 99.3 1.7E-11 3.7E-16 88.0 7.4 81 126-207 2-84 (84)
35 PRK15174 Vi polysaccharide exp 99.3 1.6E-10 3.4E-15 112.4 15.7 110 123-232 256-369 (656)
36 cd00189 TPR Tetratricopeptide 99.2 2.3E-10 5E-15 79.4 11.2 88 126-213 13-100 (100)
37 PRK10049 pgaA outer membrane p 99.2 3.3E-10 7.2E-15 111.9 16.2 115 116-231 52-166 (765)
38 KOG1126 DNA-binding cell divis 99.2 2.2E-11 4.8E-16 114.6 7.4 105 128-232 436-540 (638)
39 KOG1126 DNA-binding cell divis 99.2 1.5E-11 3.1E-16 115.8 5.3 102 130-231 403-505 (638)
40 PF13371 TPR_9: Tetratricopept 99.2 1.6E-10 3.4E-15 80.3 8.8 71 153-223 1-71 (73)
41 KOG1125 TPR repeat-containing 99.2 6.8E-11 1.5E-15 109.9 8.4 104 130-233 411-516 (579)
42 KOG0548 Molecular co-chaperone 99.2 2.1E-10 4.6E-15 105.9 11.6 102 126-227 371-472 (539)
43 PRK11447 cellulose synthase su 99.2 5.6E-10 1.2E-14 114.8 16.0 110 124-233 362-513 (1157)
44 KOG1125 TPR repeat-containing 99.2 7.1E-11 1.5E-15 109.8 8.4 109 122-230 439-559 (579)
45 KOG1155 Anaphase-promoting com 99.2 4.5E-10 9.7E-15 102.5 13.2 106 128-233 379-484 (559)
46 COG3063 PilF Tfp pilus assembl 99.2 4.6E-10 1E-14 94.5 12.3 106 125-231 81-189 (250)
47 PRK10803 tol-pal system protei 99.2 9.6E-10 2.1E-14 95.7 14.7 94 126-219 156-255 (263)
48 PRK10866 outer membrane biogen 99.2 4.8E-09 1E-13 90.3 18.7 93 122-214 41-157 (243)
49 PRK11447 cellulose synthase su 99.2 4.7E-10 1E-14 115.3 14.3 109 124-232 280-402 (1157)
50 COG5010 TadD Flp pilus assembl 99.2 5.2E-10 1.1E-14 95.5 12.1 105 129-233 82-186 (257)
51 TIGR02917 PEP_TPR_lipo putativ 99.1 9.5E-10 2.1E-14 106.9 15.4 106 126-232 783-888 (899)
52 TIGR02917 PEP_TPR_lipo putativ 99.1 1.1E-09 2.5E-14 106.4 15.3 108 124-231 136-243 (899)
53 COG4783 Putative Zn-dependent 99.1 9.5E-10 2.1E-14 100.8 13.4 110 124-233 317-426 (484)
54 PF14559 TPR_19: Tetratricopep 99.1 2.2E-10 4.7E-15 78.5 6.9 65 158-222 2-66 (68)
55 KOG0553 TPR repeat-containing 99.1 2.7E-10 5.9E-15 99.0 9.0 86 147-232 81-166 (304)
56 TIGR03302 OM_YfiO outer membra 99.1 2.2E-09 4.9E-14 90.7 13.7 112 122-233 79-221 (235)
57 PRK14574 hmsH outer membrane p 99.1 1.8E-09 3.9E-14 107.1 14.8 110 124-233 45-154 (822)
58 PRK11788 tetratricopeptide rep 99.1 2.3E-09 4.9E-14 96.7 14.2 103 128-230 156-264 (389)
59 PRK10049 pgaA outer membrane p 99.1 3.1E-09 6.7E-14 105.1 16.3 121 112-233 14-134 (765)
60 PLN02789 farnesyltranstransfer 99.1 2.5E-09 5.5E-14 95.5 14.0 101 128-228 87-189 (320)
61 PRK11788 tetratricopeptide rep 99.1 3.2E-09 7E-14 95.7 14.8 108 124-232 191-299 (389)
62 PRK15179 Vi polysaccharide bio 99.1 4.1E-09 8.8E-14 102.8 16.3 111 114-224 121-231 (694)
63 cd00189 TPR Tetratricopeptide 99.1 1.4E-09 3.1E-14 75.3 9.1 84 149-232 2-85 (100)
64 PLN02789 farnesyltranstransfer 99.1 3.5E-09 7.6E-14 94.6 13.7 106 126-231 50-158 (320)
65 PRK02603 photosystem I assembl 99.0 7.7E-09 1.7E-13 84.0 14.3 94 121-214 43-153 (172)
66 CHL00033 ycf3 photosystem I as 99.0 7E-09 1.5E-13 83.7 13.8 92 124-215 46-154 (168)
67 KOG3060 Uncharacterized conser 99.0 6.2E-09 1.3E-13 88.8 13.9 99 127-225 100-198 (289)
68 PF14559 TPR_19: Tetratricopep 99.0 9.4E-10 2E-14 75.3 6.9 65 126-190 4-68 (68)
69 TIGR02795 tol_pal_ybgF tol-pal 99.0 4.4E-09 9.4E-14 78.6 11.0 86 147-232 2-93 (119)
70 KOG3060 Uncharacterized conser 99.0 6E-09 1.3E-13 88.9 12.9 101 128-228 135-238 (289)
71 PLN03088 SGT1, suppressor of 99.0 2.4E-09 5.3E-14 97.0 11.4 83 150-232 5-87 (356)
72 PF13429 TPR_15: Tetratricopep 99.0 1.9E-09 4.1E-14 93.8 9.4 110 123-232 120-231 (280)
73 PRK02603 photosystem I assembl 99.0 8.6E-09 1.9E-13 83.7 12.6 88 143-230 31-121 (172)
74 KOG0624 dsRNA-activated protei 99.0 7.4E-09 1.6E-13 91.9 12.9 106 119-224 44-152 (504)
75 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2.5E-09 5.4E-14 98.2 10.2 70 142-211 70-142 (453)
76 KOG0543 FKBP-type peptidyl-pro 99.0 7E-09 1.5E-13 93.5 12.4 104 127-230 222-340 (397)
77 PF13432 TPR_16: Tetratricopep 99.0 2.4E-09 5.2E-14 72.8 7.3 58 124-181 8-65 (65)
78 KOG0548 Molecular co-chaperone 99.0 3.8E-09 8.3E-14 97.7 10.6 101 126-226 15-115 (539)
79 CHL00033 ycf3 photosystem I as 99.0 7.4E-09 1.6E-13 83.6 11.2 97 130-226 16-117 (168)
80 KOG0547 Translocase of outer m 99.0 3.6E-09 7.9E-14 97.2 10.1 103 128-230 375-477 (606)
81 KOG0547 Translocase of outer m 99.0 3E-09 6.6E-14 97.7 9.3 105 127-231 340-444 (606)
82 KOG2076 RNA polymerase III tra 98.9 2.2E-08 4.8E-13 97.3 15.0 106 126-231 152-257 (895)
83 PRK15331 chaperone protein Sic 98.9 4.1E-08 9E-13 79.1 12.4 96 119-215 43-138 (165)
84 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 7.6E-08 1.7E-12 88.2 14.8 114 117-233 173-286 (395)
85 PRK14574 hmsH outer membrane p 98.8 6.5E-08 1.4E-12 96.1 15.0 107 122-229 111-217 (822)
86 PF09976 TPR_21: Tetratricopep 98.8 7.8E-08 1.7E-12 75.9 12.7 107 126-233 24-136 (145)
87 PF06552 TOM20_plant: Plant sp 98.8 5.4E-08 1.2E-12 79.4 11.2 96 129-224 7-123 (186)
88 PF13414 TPR_11: TPR repeat; P 98.8 2E-08 4.3E-13 68.8 7.1 56 123-178 13-69 (69)
89 PF13371 TPR_9: Tetratricopept 98.8 4.4E-08 9.6E-13 67.8 8.7 66 125-190 7-72 (73)
90 KOG2003 TPR repeat-containing 98.8 3.5E-08 7.5E-13 90.4 10.1 110 126-235 503-612 (840)
91 COG4235 Cytochrome c biogenesi 98.8 2.2E-07 4.8E-12 81.1 14.7 93 122-214 165-260 (287)
92 PF13512 TPR_18: Tetratricopep 98.8 2.7E-07 5.9E-12 72.8 13.7 98 120-217 17-135 (142)
93 PRK10803 tol-pal system protei 98.8 1.1E-07 2.4E-12 82.8 12.2 86 147-232 142-234 (263)
94 TIGR00540 hemY_coli hemY prote 98.8 1.1E-07 2.5E-12 87.4 12.9 118 115-233 265-388 (409)
95 KOG4234 TPR repeat-containing 98.8 1.5E-07 3.2E-12 78.3 11.7 99 126-224 108-211 (271)
96 PRK15331 chaperone protein Sic 98.8 3.3E-08 7.2E-13 79.7 7.7 92 141-232 31-122 (165)
97 cd05804 StaR_like StaR_like; a 98.7 1E-07 2.2E-12 85.0 11.7 91 122-212 123-217 (355)
98 PF09976 TPR_21: Tetratricopep 98.7 1.4E-07 3.1E-12 74.4 11.2 90 118-208 53-145 (145)
99 COG1729 Uncharacterized protei 98.7 2.7E-07 5.8E-12 79.7 13.5 100 125-224 153-258 (262)
100 COG2956 Predicted N-acetylgluc 98.7 1.8E-07 4E-12 82.4 12.4 116 118-233 146-267 (389)
101 PRK10153 DNA-binding transcrip 98.7 1.1E-07 2.4E-12 90.2 11.7 103 129-232 358-470 (517)
102 TIGR00540 hemY_coli hemY prote 98.7 3.7E-07 7.9E-12 84.0 14.4 107 126-232 97-204 (409)
103 PF12895 Apc3: Anaphase-promot 98.7 2E-08 4.4E-13 71.9 4.7 74 159-233 1-76 (84)
104 PRK11906 transcriptional regul 98.7 1.7E-07 3.6E-12 86.4 11.7 101 130-230 275-387 (458)
105 PRK14720 transcript cleavage f 98.7 1.6E-07 3.5E-12 93.3 12.3 115 114-231 32-165 (906)
106 KOG4162 Predicted calmodulin-b 98.7 1.3E-07 2.9E-12 90.7 11.2 87 128-214 699-787 (799)
107 PF13424 TPR_12: Tetratricopep 98.7 2.7E-08 5.9E-13 69.9 4.8 66 145-210 3-75 (78)
108 PRK10747 putative protoheme IX 98.7 3.4E-07 7.3E-12 84.1 13.2 115 114-232 264-378 (398)
109 KOG1129 TPR repeat-containing 98.7 8.4E-08 1.8E-12 84.8 8.5 104 127-230 270-373 (478)
110 cd05804 StaR_like StaR_like; a 98.7 2.3E-07 4.9E-12 82.7 11.6 103 131-233 98-204 (355)
111 PRK11906 transcriptional regul 98.7 2.8E-07 6.2E-12 84.9 12.3 87 128-214 319-405 (458)
112 COG2956 Predicted N-acetylgluc 98.7 4E-07 8.7E-12 80.3 12.2 102 122-223 189-293 (389)
113 KOG4648 Uncharacterized conser 98.7 7.9E-08 1.7E-12 85.5 7.8 98 127-224 111-208 (536)
114 KOG1173 Anaphase-promoting com 98.6 3.2E-07 7E-12 85.7 11.9 97 128-224 429-534 (611)
115 PRK10153 DNA-binding transcrip 98.6 3.8E-07 8.2E-12 86.5 12.3 86 130-216 401-488 (517)
116 KOG1173 Anaphase-promoting com 98.6 1.7E-07 3.7E-12 87.5 9.5 107 126-232 393-506 (611)
117 KOG2002 TPR-containing nuclear 98.6 3.8E-07 8.2E-12 89.5 12.1 111 118-228 275-389 (1018)
118 PF12688 TPR_5: Tetratrico pep 98.6 6.4E-07 1.4E-11 69.0 10.9 90 122-211 10-105 (120)
119 KOG4162 Predicted calmodulin-b 98.6 3.5E-07 7.6E-12 87.9 11.4 105 129-233 666-772 (799)
120 PF12688 TPR_5: Tetratrico pep 98.6 2.2E-06 4.7E-11 66.1 13.3 84 148-231 2-91 (120)
121 PF13525 YfiO: Outer membrane 98.6 8.8E-07 1.9E-11 74.0 12.0 85 145-229 3-93 (203)
122 COG4783 Putative Zn-dependent 98.6 1.8E-06 3.9E-11 79.6 14.8 89 126-214 353-441 (484)
123 PF13428 TPR_14: Tetratricopep 98.6 1.3E-07 2.9E-12 59.6 5.3 42 148-189 2-43 (44)
124 KOG2002 TPR-containing nuclear 98.6 3.6E-07 7.9E-12 89.6 10.4 103 129-231 146-249 (1018)
125 PRK10866 outer membrane biogen 98.6 1E-06 2.2E-11 75.9 12.1 84 145-228 30-119 (243)
126 PF13512 TPR_18: Tetratricopep 98.6 1.5E-06 3.3E-11 68.6 11.8 86 145-230 8-99 (142)
127 COG4785 NlpI Lipoprotein NlpI, 98.6 3.4E-07 7.4E-12 77.0 8.5 86 130-215 82-167 (297)
128 PRK10747 putative protoheme IX 98.5 1.9E-06 4E-11 79.2 13.9 106 126-232 97-204 (398)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.4E-06 3E-11 79.9 12.8 83 126-208 213-295 (395)
130 KOG4555 TPR repeat-containing 98.5 1.4E-06 3.1E-11 67.9 10.8 90 125-214 55-148 (175)
131 KOG1129 TPR repeat-containing 98.5 2.7E-07 5.8E-12 81.7 7.3 105 128-232 305-446 (478)
132 KOG1156 N-terminal acetyltrans 98.5 9.5E-07 2.1E-11 83.7 10.7 109 123-231 51-159 (700)
133 KOG1128 Uncharacterized conser 98.5 3E-07 6.4E-12 88.0 7.4 105 127-231 499-603 (777)
134 KOG0550 Molecular chaperone (D 98.5 4.6E-07 1E-11 82.1 8.1 87 127-213 263-353 (486)
135 KOG0550 Molecular chaperone (D 98.5 9.1E-07 2E-11 80.2 9.9 91 142-232 244-338 (486)
136 PF13525 YfiO: Outer membrane 98.5 6.1E-06 1.3E-10 69.0 14.1 94 121-214 13-123 (203)
137 KOG4648 Uncharacterized conser 98.5 2.9E-07 6.3E-12 81.9 6.3 75 150-224 100-174 (536)
138 KOG2076 RNA polymerase III tra 98.5 5.6E-06 1.2E-10 80.9 15.4 92 121-212 181-272 (895)
139 KOG0376 Serine-threonine phosp 98.5 2.1E-07 4.6E-12 85.6 5.5 98 127-224 18-115 (476)
140 PRK14720 transcript cleavage f 98.5 1.8E-06 3.9E-11 86.0 12.4 111 123-234 126-276 (906)
141 KOG1127 TPR repeat-containing 98.5 6.5E-07 1.4E-11 88.2 9.0 100 129-228 578-677 (1238)
142 PF13428 TPR_14: Tetratricopep 98.4 5.1E-07 1.1E-11 56.9 5.4 43 181-223 1-43 (44)
143 COG1729 Uncharacterized protei 98.4 1.8E-06 3.9E-11 74.6 10.1 85 150-234 144-234 (262)
144 KOG1156 N-terminal acetyltrans 98.4 1.1E-06 2.4E-11 83.2 9.2 106 128-233 22-127 (700)
145 KOG0624 dsRNA-activated protei 98.4 3.9E-07 8.5E-12 81.1 5.8 89 144-232 35-123 (504)
146 KOG1128 Uncharacterized conser 98.4 6.3E-07 1.4E-11 85.8 7.0 102 134-235 471-573 (777)
147 PF13431 TPR_17: Tetratricopep 98.4 3.4E-07 7.3E-12 54.8 3.3 32 170-201 2-33 (34)
148 KOG1174 Anaphase-promoting com 98.3 4.9E-06 1.1E-10 75.7 11.2 96 129-225 420-515 (564)
149 PF04733 Coatomer_E: Coatomer 98.3 2.7E-06 5.8E-11 75.2 9.4 113 119-231 137-251 (290)
150 KOG4555 TPR repeat-containing 98.3 6E-06 1.3E-10 64.5 10.1 83 150-232 46-132 (175)
151 KOG0495 HAT repeat protein [RN 98.3 4.1E-06 8.8E-11 79.8 11.0 104 128-231 666-769 (913)
152 KOG1174 Anaphase-promoting com 98.3 8.2E-06 1.8E-10 74.3 12.1 109 124-232 243-385 (564)
153 KOG0543 FKBP-type peptidyl-pro 98.3 4E-06 8.7E-11 75.9 9.8 86 127-212 271-357 (397)
154 KOG4642 Chaperone-dependent E3 98.3 3.4E-06 7.4E-11 71.7 8.5 84 128-211 25-108 (284)
155 COG4105 ComL DNA uptake lipopr 98.3 9.3E-05 2E-09 63.7 16.6 91 124-214 45-149 (254)
156 COG4700 Uncharacterized protei 98.2 3E-05 6.4E-10 64.1 12.1 106 122-227 98-207 (251)
157 PF13431 TPR_17: Tetratricopep 98.2 2E-06 4.4E-11 51.3 3.8 34 135-168 1-34 (34)
158 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.5E-05 3.2E-10 73.7 10.5 59 119-177 81-142 (453)
159 PF04733 Coatomer_E: Coatomer 98.2 1.3E-05 2.8E-10 70.9 9.8 91 127-217 181-272 (290)
160 PF07719 TPR_2: Tetratricopept 98.2 6.5E-06 1.4E-10 48.2 5.3 33 182-214 2-34 (34)
161 PF00515 TPR_1: Tetratricopept 98.1 5.1E-06 1.1E-10 49.0 4.7 32 182-213 2-33 (34)
162 KOG1127 TPR repeat-containing 98.1 2.7E-05 5.8E-10 77.2 12.1 92 124-215 13-108 (1238)
163 PF07719 TPR_2: Tetratricopept 98.1 7.1E-06 1.5E-10 48.1 5.1 34 147-180 1-34 (34)
164 PF00515 TPR_1: Tetratricopept 98.1 5E-06 1.1E-10 49.0 4.4 34 147-180 1-34 (34)
165 KOG1840 Kinesin light chain [C 98.1 2.2E-05 4.8E-10 74.1 10.5 113 119-231 205-341 (508)
166 PF12569 NARP1: NMDA receptor- 98.1 0.00027 5.9E-09 67.2 17.8 112 120-231 201-321 (517)
167 KOG2053 Mitochondrial inherita 98.1 5.1E-05 1.1E-09 74.4 12.0 103 127-230 23-125 (932)
168 KOG0545 Aryl-hydrocarbon recep 98.0 8.9E-05 1.9E-09 63.6 11.6 104 115-218 177-301 (329)
169 PF03704 BTAD: Bacterial trans 98.0 0.00017 3.8E-09 56.5 12.3 62 148-209 63-124 (146)
170 KOG4642 Chaperone-dependent E3 98.0 1.2E-05 2.6E-10 68.5 5.8 78 152-229 15-92 (284)
171 KOG0495 HAT repeat protein [RN 98.0 0.00014 3E-09 69.7 13.4 103 126-229 597-699 (913)
172 KOG1840 Kinesin light chain [C 98.0 5E-05 1.1E-09 71.7 10.5 114 119-232 247-384 (508)
173 COG4785 NlpI Lipoprotein NlpI, 98.0 5.4E-05 1.2E-09 63.9 9.5 79 146-224 64-142 (297)
174 PF12569 NARP1: NMDA receptor- 98.0 5.9E-05 1.3E-09 71.6 10.5 81 148-228 195-275 (517)
175 KOG2003 TPR repeat-containing 97.9 0.00015 3.2E-09 67.0 12.2 109 119-227 598-706 (840)
176 KOG4234 TPR repeat-containing 97.9 9.4E-05 2E-09 61.8 8.9 83 147-229 95-182 (271)
177 PF14561 TPR_20: Tetratricopep 97.9 0.00021 4.5E-09 52.2 9.8 77 132-208 7-85 (90)
178 PF04184 ST7: ST7 protein; In 97.8 0.00025 5.4E-09 66.1 12.1 112 115-228 170-308 (539)
179 COG3071 HemY Uncharacterized e 97.8 0.00018 3.9E-09 65.1 10.8 76 132-208 313-388 (400)
180 KOG4340 Uncharacterized conser 97.8 7.4E-05 1.6E-09 65.8 7.8 104 129-232 26-195 (459)
181 KOG1308 Hsp70-interacting prot 97.8 7.7E-06 1.7E-10 72.7 1.7 89 126-214 127-215 (377)
182 KOG0376 Serine-threonine phosp 97.8 8.4E-06 1.8E-10 75.2 2.0 85 149-233 6-90 (476)
183 COG3118 Thioredoxin domain-con 97.8 0.00079 1.7E-08 59.1 13.4 89 126-214 147-269 (304)
184 COG0457 NrfG FOG: TPR repeat [ 97.8 0.0011 2.5E-08 51.5 13.2 99 126-224 143-245 (291)
185 COG4105 ComL DNA uptake lipopr 97.8 0.00046 1E-08 59.4 11.5 82 146-227 33-120 (254)
186 PF05843 Suf: Suppressor of fo 97.7 0.00027 5.9E-09 62.0 10.4 87 129-215 17-104 (280)
187 KOG3785 Uncharacterized conser 97.7 0.00012 2.6E-09 65.9 7.9 102 120-222 29-131 (557)
188 PF06552 TOM20_plant: Plant sp 97.7 0.00014 3.1E-09 59.5 7.6 62 129-190 51-123 (186)
189 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0011 2.4E-08 51.6 12.6 101 129-229 111-216 (291)
190 PF13181 TPR_8: Tetratricopept 97.7 7.3E-05 1.6E-09 43.8 4.4 32 182-213 2-33 (34)
191 PRK10941 hypothetical protein; 97.7 0.00056 1.2E-08 59.8 11.7 70 149-218 183-252 (269)
192 COG4700 Uncharacterized protei 97.7 0.0011 2.3E-08 55.0 12.1 102 125-227 68-172 (251)
193 COG3071 HemY Uncharacterized e 97.7 0.0019 4.2E-08 58.5 14.8 109 125-233 96-205 (400)
194 KOG2796 Uncharacterized conser 97.7 0.00043 9.3E-09 60.1 10.1 102 124-225 223-333 (366)
195 PF13181 TPR_8: Tetratricopept 97.7 9.2E-05 2E-09 43.3 4.2 34 147-180 1-34 (34)
196 PF14938 SNAP: Soluble NSF att 97.6 0.00018 4E-09 63.0 7.7 103 128-230 89-211 (282)
197 PLN03218 maturation of RBCL 1; 97.6 0.0018 3.8E-08 66.6 15.4 91 119-210 548-643 (1060)
198 PF13174 TPR_6: Tetratricopept 97.6 0.00014 3.1E-09 42.0 4.4 33 182-214 1-33 (33)
199 KOG0545 Aryl-hydrocarbon recep 97.6 0.00044 9.6E-09 59.4 8.8 82 146-227 177-276 (329)
200 PLN03218 maturation of RBCL 1; 97.5 0.0023 5E-08 65.8 15.1 115 117-232 511-631 (1060)
201 PLN03081 pentatricopeptide (PP 97.5 0.00074 1.6E-08 66.3 10.7 105 126-232 439-545 (697)
202 KOG2376 Signal recognition par 97.5 0.00052 1.1E-08 65.0 9.0 93 126-221 25-150 (652)
203 PF10300 DUF3808: Protein of u 97.5 0.0014 3.1E-08 61.6 11.9 105 126-230 246-355 (468)
204 PF08424 NRDE-2: NRDE-2, neces 97.5 0.0031 6.8E-08 56.4 13.5 95 133-227 5-111 (321)
205 PLN03081 pentatricopeptide (PP 97.5 0.002 4.3E-08 63.2 13.0 107 121-230 267-375 (697)
206 PLN03077 Protein ECB2; Provisi 97.4 0.002 4.3E-08 64.7 12.9 111 119-231 595-707 (857)
207 PF13424 TPR_12: Tetratricopep 97.4 0.00037 8E-09 48.6 5.4 54 123-176 15-75 (78)
208 KOG3081 Vesicle coat complex C 97.4 0.0034 7.4E-08 54.5 11.9 100 129-230 153-256 (299)
209 PF14938 SNAP: Soluble NSF att 97.4 0.0017 3.7E-08 56.9 10.2 100 127-226 129-246 (282)
210 PF13174 TPR_6: Tetratricopept 97.4 0.00037 8E-09 40.2 4.1 33 148-180 1-33 (33)
211 PF13176 TPR_7: Tetratricopept 97.3 0.00046 9.9E-09 41.4 4.2 24 150-173 2-25 (36)
212 KOG3785 Uncharacterized conser 97.3 0.00091 2E-08 60.3 7.1 103 126-228 70-198 (557)
213 PF13176 TPR_7: Tetratricopept 97.2 0.00068 1.5E-08 40.6 4.3 32 183-214 1-34 (36)
214 PF09613 HrpB1_HrpK: Bacterial 97.2 0.0038 8.2E-08 50.3 9.8 85 129-214 26-110 (160)
215 PF03704 BTAD: Bacterial trans 97.2 0.0055 1.2E-07 47.8 10.7 52 181-232 62-113 (146)
216 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0021 4.5E-08 57.4 8.9 100 115-214 80-186 (390)
217 COG4976 Predicted methyltransf 97.2 0.00071 1.5E-08 57.6 5.2 57 158-214 6-62 (287)
218 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0023 4.9E-08 42.1 6.5 39 150-188 4-42 (53)
219 COG2976 Uncharacterized protei 97.2 0.004 8.6E-08 51.7 9.4 91 122-214 98-192 (207)
220 PLN03077 Protein ECB2; Provisi 97.1 0.0077 1.7E-07 60.5 13.5 106 122-232 533-642 (857)
221 PF14561 TPR_20: Tetratricopep 97.1 0.0022 4.8E-08 46.8 7.1 50 165-214 6-55 (90)
222 KOG2610 Uncharacterized conser 97.1 0.0044 9.5E-08 55.6 10.0 102 129-230 119-224 (491)
223 KOG2376 Signal recognition par 97.1 0.0056 1.2E-07 58.2 11.2 95 129-230 95-190 (652)
224 smart00028 TPR Tetratricopepti 97.1 0.00095 2.1E-08 36.6 3.7 31 183-213 3-33 (34)
225 KOG3824 Huntingtin interacting 97.1 0.0022 4.8E-08 56.9 7.5 67 156-222 125-191 (472)
226 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0042 9.2E-08 40.8 7.0 40 182-221 2-41 (53)
227 COG2976 Uncharacterized protei 97.0 0.01 2.2E-07 49.4 10.2 101 131-233 70-177 (207)
228 PF13281 DUF4071: Domain of un 97.0 0.03 6.5E-07 51.2 14.2 97 118-214 184-338 (374)
229 KOG3824 Huntingtin interacting 97.0 0.0024 5.3E-08 56.6 6.9 71 120-190 123-193 (472)
230 smart00028 TPR Tetratricopepti 96.9 0.0014 3.1E-08 35.9 3.7 33 148-180 2-34 (34)
231 KOG1130 Predicted G-alpha GTPa 96.9 0.0017 3.8E-08 59.5 5.9 110 121-230 25-150 (639)
232 PRK10941 hypothetical protein; 96.9 0.013 2.8E-07 51.3 11.1 72 122-193 190-261 (269)
233 KOG2796 Uncharacterized conser 96.9 0.0056 1.2E-07 53.3 8.5 103 128-230 192-301 (366)
234 TIGR02561 HrpB1_HrpK type III 96.9 0.0081 1.8E-07 47.8 8.5 86 128-214 25-110 (153)
235 PF09613 HrpB1_HrpK: Bacterial 96.8 0.022 4.7E-07 46.0 10.9 84 147-230 10-93 (160)
236 COG3118 Thioredoxin domain-con 96.8 0.0098 2.1E-07 52.3 9.4 99 133-234 123-255 (304)
237 PF05843 Suf: Suppressor of fo 96.8 0.022 4.8E-07 49.9 11.7 89 127-215 50-141 (280)
238 KOG2396 HAT (Half-A-TPR) repea 96.8 0.028 6E-07 52.8 12.6 93 131-223 89-182 (568)
239 KOG3081 Vesicle coat complex C 96.8 0.023 4.9E-07 49.5 11.3 86 130-215 190-276 (299)
240 KOG0551 Hsp90 co-chaperone CNS 96.7 0.0086 1.9E-07 53.5 8.3 84 146-229 80-167 (390)
241 PF12968 DUF3856: Domain of Un 96.7 0.065 1.4E-06 41.3 12.0 89 121-209 17-128 (144)
242 PRK04841 transcriptional regul 96.7 0.026 5.6E-07 56.7 12.7 106 125-230 464-588 (903)
243 KOG4340 Uncharacterized conser 96.7 0.0051 1.1E-07 54.5 6.4 73 139-211 134-208 (459)
244 COG3629 DnrI DNA-binding trans 96.6 0.023 5E-07 49.9 10.3 79 130-210 138-216 (280)
245 KOG1070 rRNA processing protei 96.6 0.033 7.3E-07 57.7 12.4 99 130-228 1547-1647(1710)
246 COG2912 Uncharacterized conser 96.5 0.012 2.7E-07 51.2 8.0 69 150-218 184-252 (269)
247 KOG1915 Cell cycle control pro 96.5 0.04 8.7E-07 51.6 11.6 107 119-226 443-551 (677)
248 COG4649 Uncharacterized protei 96.5 0.078 1.7E-06 43.6 11.7 102 128-230 73-215 (221)
249 PRK04841 transcriptional regul 96.5 0.043 9.4E-07 55.1 12.7 106 126-231 422-547 (903)
250 PF04184 ST7: ST7 protein; In 96.4 0.05 1.1E-06 51.1 11.7 80 148-227 260-342 (539)
251 KOG1070 rRNA processing protei 96.4 0.034 7.5E-07 57.6 11.2 104 129-233 1513-1618(1710)
252 KOG3364 Membrane protein invol 96.3 0.12 2.5E-06 40.7 11.6 73 146-218 31-108 (149)
253 KOG1914 mRNA cleavage and poly 96.3 0.022 4.7E-07 53.9 8.8 74 137-211 10-83 (656)
254 KOG4507 Uncharacterized conser 96.3 0.027 5.9E-07 53.9 9.3 98 128-225 622-720 (886)
255 KOG1941 Acetylcholine receptor 96.2 0.014 2.9E-07 53.0 6.6 108 128-235 137-266 (518)
256 KOG1308 Hsp70-interacting prot 96.2 0.0012 2.7E-08 58.9 -0.1 64 155-218 122-185 (377)
257 COG4976 Predicted methyltransf 96.2 0.0068 1.5E-07 51.7 4.2 57 126-182 8-64 (287)
258 KOG1550 Extracellular protein 96.2 0.051 1.1E-06 52.3 10.7 99 126-228 262-373 (552)
259 KOG2053 Mitochondrial inherita 96.0 0.074 1.6E-06 52.9 11.2 99 127-226 57-155 (932)
260 KOG1915 Cell cycle control pro 96.0 0.055 1.2E-06 50.7 9.8 87 128-214 88-174 (677)
261 KOG1130 Predicted G-alpha GTPa 96.0 0.013 2.9E-07 53.9 5.6 103 128-230 210-330 (639)
262 PF09986 DUF2225: Uncharacteri 96.0 0.066 1.4E-06 45.3 9.3 96 128-223 92-208 (214)
263 PF13374 TPR_10: Tetratricopep 95.9 0.023 4.9E-07 34.1 4.6 28 148-175 3-30 (42)
264 PF10300 DUF3808: Protein of u 95.8 0.054 1.2E-06 51.1 9.1 87 126-212 280-378 (468)
265 PF13374 TPR_10: Tetratricopep 95.8 0.027 5.9E-07 33.7 4.8 31 181-211 2-32 (42)
266 PF02259 FAT: FAT domain; Int 95.8 0.29 6.3E-06 43.2 13.3 113 119-231 152-308 (352)
267 COG4455 ImpE Protein of avirul 95.8 0.07 1.5E-06 45.4 8.5 58 123-180 11-68 (273)
268 COG2912 Uncharacterized conser 95.7 0.071 1.5E-06 46.5 8.8 70 122-191 190-259 (269)
269 TIGR02561 HrpB1_HrpK type III 95.7 0.16 3.5E-06 40.5 9.8 82 149-230 12-93 (153)
270 PF12862 Apc5: Anaphase-promot 95.6 0.055 1.2E-06 39.5 6.7 57 157-213 8-73 (94)
271 KOG1310 WD40 repeat protein [G 95.6 0.048 1E-06 51.6 7.6 86 129-214 390-478 (758)
272 KOG2471 TPR repeat-containing 95.5 0.02 4.4E-07 53.7 4.9 106 126-231 253-385 (696)
273 PF13281 DUF4071: Domain of un 95.5 0.32 6.8E-06 44.6 12.5 97 118-214 146-259 (374)
274 COG0790 FOG: TPR repeat, SEL1 95.4 0.36 7.8E-06 41.9 12.3 54 165-222 173-230 (292)
275 PF08424 NRDE-2: NRDE-2, neces 95.4 0.32 6.9E-06 43.5 12.1 81 129-209 47-130 (321)
276 COG5191 Uncharacterized conser 95.4 0.034 7.3E-07 49.6 5.5 88 135-222 95-183 (435)
277 PF07720 TPR_3: Tetratricopept 95.2 0.073 1.6E-06 32.0 5.0 32 148-179 2-35 (36)
278 KOG1586 Protein required for f 95.2 0.26 5.7E-06 42.4 10.1 99 116-214 74-187 (288)
279 PRK13184 pknD serine/threonine 95.1 0.24 5.2E-06 50.4 11.4 87 128-215 490-586 (932)
280 KOG3364 Membrane protein invol 95.1 0.081 1.7E-06 41.6 6.3 64 129-192 51-116 (149)
281 KOG1586 Protein required for f 95.1 0.36 7.9E-06 41.5 10.7 88 128-215 129-229 (288)
282 COG0790 FOG: TPR repeat, SEL1 95.0 0.66 1.4E-05 40.2 12.8 103 122-228 86-200 (292)
283 COG3914 Spy Predicted O-linked 94.9 0.29 6.3E-06 46.9 10.7 96 129-224 83-185 (620)
284 KOG0530 Protein farnesyltransf 94.9 0.65 1.4E-05 40.6 11.9 98 129-226 59-158 (318)
285 PF04910 Tcf25: Transcriptiona 94.9 0.46 1E-05 43.3 11.7 81 135-215 28-138 (360)
286 PF10602 RPN7: 26S proteasome 94.8 0.67 1.4E-05 37.9 11.5 83 148-230 37-130 (177)
287 COG3898 Uncharacterized membra 94.8 0.49 1.1E-05 43.6 11.4 46 127-172 168-213 (531)
288 PF10373 EST1_DNA_bind: Est1 D 94.8 0.099 2.1E-06 44.9 6.9 62 132-193 1-62 (278)
289 PF07079 DUF1347: Protein of u 94.8 0.44 9.5E-06 44.6 11.1 70 158-229 473-542 (549)
290 KOG2610 Uncharacterized conser 94.7 0.19 4.1E-06 45.4 8.5 75 133-207 157-235 (491)
291 PF07720 TPR_3: Tetratricopept 94.7 0.13 2.7E-06 31.0 5.2 34 181-214 1-36 (36)
292 PF04781 DUF627: Protein of un 94.6 0.33 7.3E-06 36.7 8.3 86 125-210 8-107 (111)
293 KOG2047 mRNA splicing factor [ 94.5 0.23 4.9E-06 48.2 9.0 92 139-232 341-442 (835)
294 PF07721 TPR_4: Tetratricopept 94.1 0.067 1.5E-06 29.4 2.8 23 183-205 3-25 (26)
295 KOG1550 Extracellular protein 94.1 0.96 2.1E-05 43.5 12.5 93 128-226 308-407 (552)
296 PF14863 Alkyl_sulf_dimr: Alky 94.1 0.35 7.6E-06 38.2 7.9 54 145-198 68-121 (141)
297 KOG0529 Protein geranylgeranyl 93.8 1.3 2.7E-05 40.9 11.9 93 134-226 96-194 (421)
298 KOG1585 Protein required for f 93.8 1 2.2E-05 39.1 10.6 89 126-214 44-143 (308)
299 PF04781 DUF627: Protein of un 93.6 0.44 9.5E-06 36.1 7.3 72 153-224 2-87 (111)
300 KOG3807 Predicted membrane pro 93.6 1.3 2.8E-05 40.2 11.3 89 124-214 195-308 (556)
301 TIGR03504 FimV_Cterm FimV C-te 93.5 0.15 3.2E-06 32.1 3.9 27 184-210 2-28 (44)
302 PF11207 DUF2989: Protein of u 93.3 0.8 1.7E-05 38.4 9.0 70 163-233 122-196 (203)
303 COG3947 Response regulator con 93.2 0.46 9.9E-06 42.2 7.8 56 152-207 284-339 (361)
304 COG3898 Uncharacterized membra 93.2 1 2.2E-05 41.5 10.2 83 126-209 133-216 (531)
305 COG3107 LppC Putative lipoprot 93.2 1.8 4E-05 41.2 12.2 78 153-230 69-151 (604)
306 PF10516 SHNi-TPR: SHNi-TPR; 93.1 0.16 3.5E-06 30.9 3.5 28 149-176 3-30 (38)
307 PF07721 TPR_4: Tetratricopept 93.1 0.13 2.7E-06 28.3 2.8 25 148-172 2-26 (26)
308 KOG1585 Protein required for f 93.0 2.4 5.3E-05 36.8 11.7 104 125-228 122-241 (308)
309 PF10373 EST1_DNA_bind: Est1 D 93.0 0.48 1E-05 40.6 7.8 62 166-227 1-62 (278)
310 COG4455 ImpE Protein of avirul 92.8 1 2.2E-05 38.5 9.1 75 155-229 9-86 (273)
311 COG3629 DnrI DNA-binding trans 92.8 0.62 1.4E-05 41.0 8.1 55 122-176 162-216 (280)
312 KOG0529 Protein geranylgeranyl 92.7 1.7 3.7E-05 40.1 11.0 65 162-226 90-156 (421)
313 KOG2047 mRNA splicing factor [ 92.6 2.6 5.7E-05 41.2 12.5 117 119-235 393-531 (835)
314 PF10579 Rapsyn_N: Rapsyn N-te 92.5 1.5 3.2E-05 31.2 8.1 51 154-204 13-66 (80)
315 PF08631 SPO22: Meiosis protei 92.2 4.2 9.1E-05 35.4 12.7 92 127-218 7-124 (278)
316 PF10516 SHNi-TPR: SHNi-TPR; 92.2 0.29 6.3E-06 29.8 3.7 30 182-211 2-31 (38)
317 KOG4814 Uncharacterized conser 92.0 2.2 4.8E-05 41.7 11.1 80 129-208 370-455 (872)
318 COG5107 RNA14 Pre-mRNA 3'-end 91.6 1.5 3.2E-05 41.3 9.3 93 135-229 30-122 (660)
319 PRK15180 Vi polysaccharide bio 91.4 2.3 4.9E-05 40.4 10.4 96 119-214 295-390 (831)
320 PF10579 Rapsyn_N: Rapsyn N-te 91.2 1.2 2.6E-05 31.6 6.5 51 126-176 19-72 (80)
321 PF09986 DUF2225: Uncharacteri 91.1 1.6 3.4E-05 36.9 8.4 61 129-189 141-208 (214)
322 PF12862 Apc5: Anaphase-promot 90.9 1.1 2.3E-05 32.6 6.4 53 126-178 11-72 (94)
323 PF10255 Paf67: RNA polymerase 90.8 0.48 1E-05 43.8 5.4 59 150-209 125-192 (404)
324 PF10602 RPN7: 26S proteasome 90.6 1.3 2.8E-05 36.2 7.3 88 125-212 48-144 (177)
325 COG4259 Uncharacterized protei 90.6 5.8 0.00013 29.7 11.3 37 146-182 71-107 (121)
326 PF11846 DUF3366: Domain of un 90.5 1.1 2.3E-05 36.8 6.8 51 163-214 127-177 (193)
327 KOG0530 Protein farnesyltransf 90.5 2.6 5.7E-05 36.9 9.2 90 129-218 94-184 (318)
328 KOG3617 WD40 and TPR repeat-co 90.5 2.2 4.8E-05 43.0 9.7 86 122-207 867-993 (1416)
329 COG5191 Uncharacterized conser 90.5 0.51 1.1E-05 42.3 5.0 71 117-187 111-182 (435)
330 PF12968 DUF3856: Domain of Un 90.2 4.1 8.9E-05 31.6 9.1 84 149-232 9-117 (144)
331 KOG1258 mRNA processing protei 89.6 8.4 0.00018 37.2 12.7 106 126-231 310-416 (577)
332 KOG2396 HAT (Half-A-TPR) repea 89.5 3.6 7.8E-05 39.1 10.0 70 118-187 110-180 (568)
333 COG3947 Response regulator con 89.5 3 6.5E-05 37.1 9.0 51 183-233 281-331 (361)
334 COG3914 Spy Predicted O-linked 89.5 2.5 5.4E-05 40.7 9.1 95 132-226 50-147 (620)
335 PF12854 PPR_1: PPR repeat 89.3 0.92 2E-05 26.5 4.0 27 146-172 6-32 (34)
336 smart00386 HAT HAT (Half-A-TPR 89.3 1.3 2.7E-05 24.5 4.6 22 164-185 4-25 (33)
337 KOG2300 Uncharacterized conser 89.2 4.7 0.0001 38.3 10.5 83 126-211 380-475 (629)
338 smart00386 HAT HAT (Half-A-TPR 89.2 1.4 3E-05 24.3 4.7 31 195-225 1-31 (33)
339 PF11846 DUF3366: Domain of un 89.0 2.2 4.8E-05 34.9 7.6 50 130-180 128-177 (193)
340 KOG0546 HSP90 co-chaperone CPR 88.8 0.33 7.2E-06 43.8 2.6 78 151-228 279-356 (372)
341 PF13041 PPR_2: PPR repeat fam 88.7 1.2 2.5E-05 28.0 4.6 32 146-177 2-33 (50)
342 PF04910 Tcf25: Transcriptiona 88.6 5.7 0.00012 36.2 10.6 102 119-220 109-232 (360)
343 PF02259 FAT: FAT domain; Int 88.2 4.2 9.1E-05 35.7 9.4 67 143-209 142-212 (352)
344 KOG4814 Uncharacterized conser 87.7 3.4 7.4E-05 40.4 8.7 66 150-215 357-428 (872)
345 PF04053 Coatomer_WDAD: Coatom 87.2 1.6 3.4E-05 41.0 6.2 61 143-211 343-403 (443)
346 KOG2471 TPR repeat-containing 87.1 2.8 6.1E-05 39.8 7.6 50 145-194 333-382 (696)
347 KOG1941 Acetylcholine receptor 87.0 1.7 3.6E-05 39.9 5.9 65 149-213 124-194 (518)
348 KOG1310 WD40 repeat protein [G 86.8 1.5 3.1E-05 42.0 5.6 72 159-230 386-460 (758)
349 PF11207 DUF2989: Protein of u 86.8 8.1 0.00017 32.4 9.5 71 130-201 123-198 (203)
350 cd02682 MIT_AAA_Arch MIT: doma 86.7 4 8.7E-05 28.7 6.6 42 153-194 12-60 (75)
351 cd02682 MIT_AAA_Arch MIT: doma 86.7 3.8 8.3E-05 28.8 6.5 59 164-230 4-64 (75)
352 PF07079 DUF1347: Protein of u 86.1 14 0.0003 35.0 11.5 90 140-229 72-181 (549)
353 TIGR03504 FimV_Cterm FimV C-te 86.0 1.5 3.3E-05 27.5 3.7 26 151-176 3-28 (44)
354 KOG1914 mRNA cleavage and poly 85.9 22 0.00049 34.3 12.9 93 130-222 383-479 (656)
355 PF01535 PPR: PPR repeat; Int 85.9 1.3 2.8E-05 24.3 3.2 26 150-175 3-28 (31)
356 PF04190 DUF410: Protein of un 85.8 9.4 0.0002 33.1 10.0 67 144-210 87-170 (260)
357 KOG4507 Uncharacterized conser 85.8 1.8 3.8E-05 42.0 5.7 97 134-230 200-298 (886)
358 KOG4056 Translocase of outer m 85.5 9.6 0.00021 30.0 8.7 32 151-182 85-116 (143)
359 PF11817 Foie-gras_1: Foie gra 85.3 6.2 0.00013 33.8 8.6 79 130-208 155-245 (247)
360 PF12921 ATP13: Mitochondrial 84.8 11 0.00024 29.0 8.9 74 147-220 2-93 (126)
361 PRK15490 Vi polysaccharide bio 84.3 11 0.00024 36.6 10.4 75 129-205 24-98 (578)
362 TIGR00756 PPR pentatricopeptid 83.9 2.6 5.7E-05 23.4 4.0 26 150-175 3-28 (35)
363 PF11817 Foie-gras_1: Foie gra 83.9 4.8 0.0001 34.5 7.2 72 161-232 152-235 (247)
364 KOG1258 mRNA processing protei 83.7 8.2 0.00018 37.2 9.2 86 129-214 61-147 (577)
365 PF14863 Alkyl_sulf_dimr: Alky 83.6 6.1 0.00013 31.2 7.1 61 172-233 62-122 (141)
366 KOG2581 26S proteasome regulat 83.2 4.6 0.0001 37.4 7.0 67 148-214 210-280 (493)
367 TIGR00985 3a0801s04tom mitocho 83.1 22 0.00047 28.4 10.6 27 187-213 96-123 (148)
368 cd02680 MIT_calpain7_2 MIT: do 82.6 2.8 6E-05 29.5 4.3 33 129-176 3-35 (75)
369 PF10345 Cohesin_load: Cohesin 81.9 20 0.00044 34.8 11.5 82 131-213 39-131 (608)
370 cd02681 MIT_calpain7_1 MIT: do 81.9 3.1 6.7E-05 29.3 4.3 20 157-176 16-35 (76)
371 PF10345 Cohesin_load: Cohesin 81.8 11 0.00023 36.7 9.6 79 150-228 364-462 (608)
372 COG2909 MalT ATP-dependent tra 81.6 18 0.0004 36.6 10.9 90 125-214 427-530 (894)
373 PF13041 PPR_2: PPR repeat fam 81.1 11 0.00023 23.5 6.6 32 180-211 2-33 (50)
374 PRK10722 hypothetical protein; 81.1 35 0.00076 29.4 13.3 76 145-224 73-149 (247)
375 smart00299 CLH Clathrin heavy 80.7 13 0.00028 28.4 8.0 80 124-205 18-106 (140)
376 PRK11619 lytic murein transgly 80.6 9.3 0.0002 37.7 8.6 64 146-209 311-374 (644)
377 PF04212 MIT: MIT (microtubule 80.5 3.9 8.4E-05 27.7 4.4 18 158-175 16-33 (69)
378 KOG0985 Vesicle coat protein c 80.1 21 0.00046 37.1 10.8 61 145-210 1102-1162(1666)
379 PF09797 NatB_MDM20: N-acetylt 79.9 7.4 0.00016 35.2 7.3 45 129-173 199-243 (365)
380 PF04053 Coatomer_WDAD: Coatom 79.8 32 0.00069 32.4 11.6 68 158-230 329-404 (443)
381 PF15015 NYD-SP12_N: Spermatog 79.5 4.2 9.1E-05 38.0 5.4 59 151-209 232-290 (569)
382 PF13226 DUF4034: Domain of un 79.3 29 0.00063 30.6 10.5 64 165-228 61-146 (277)
383 PF01535 PPR: PPR repeat; Int 79.0 3.5 7.6E-05 22.4 3.2 28 183-210 2-29 (31)
384 PF12854 PPR_1: PPR repeat 78.8 5.3 0.00011 23.2 4.0 28 180-207 6-33 (34)
385 PF13812 PPR_3: Pentatricopept 78.6 6.1 0.00013 22.0 4.3 27 149-175 3-29 (34)
386 PF09477 Type_III_YscG: Bacter 78.5 27 0.00058 26.5 8.9 72 130-207 23-95 (116)
387 PF09205 DUF1955: Domain of un 78.3 28 0.0006 27.7 8.9 57 154-210 93-149 (161)
388 KOG1464 COP9 signalosome, subu 78.2 5.1 0.00011 35.5 5.3 53 123-175 37-93 (440)
389 KOG0546 HSP90 co-chaperone CPR 78.1 1.7 3.8E-05 39.4 2.5 69 129-197 291-359 (372)
390 PF09797 NatB_MDM20: N-acetylt 78.0 8.2 0.00018 34.9 7.0 46 162-207 198-243 (365)
391 cd02678 MIT_VPS4 MIT: domain c 77.9 16 0.00035 25.2 7.0 17 159-175 18-34 (75)
392 PF15297 CKAP2_C: Cytoskeleton 77.4 17 0.00037 33.0 8.6 73 157-229 112-189 (353)
393 KOG2422 Uncharacterized conser 77.2 50 0.0011 32.2 11.9 98 128-225 253-387 (665)
394 KOG0128 RNA-binding protein SA 76.4 47 0.001 33.6 11.8 99 129-228 95-196 (881)
395 KOG0985 Vesicle coat protein c 76.2 15 0.00032 38.2 8.5 98 124-229 1205-1327(1666)
396 PF07219 HemY_N: HemY protein 76.2 16 0.00034 27.1 7.0 47 150-196 62-108 (108)
397 KOG2758 Translation initiation 75.8 21 0.00045 32.4 8.5 68 142-209 124-195 (432)
398 cd02684 MIT_2 MIT: domain cont 75.8 6.6 0.00014 27.4 4.5 32 129-175 3-34 (75)
399 cd00280 TRFH Telomeric Repeat 75.5 35 0.00075 28.4 9.2 45 153-198 117-161 (200)
400 PRK13184 pknD serine/threonine 75.5 35 0.00075 35.3 11.1 88 128-216 534-626 (932)
401 PF15015 NYD-SP12_N: Spermatog 75.4 8.8 0.00019 35.9 6.3 75 155-229 184-276 (569)
402 KOG1464 COP9 signalosome, subu 74.5 8.4 0.00018 34.2 5.7 51 159-209 39-93 (440)
403 COG2909 MalT ATP-dependent tra 74.3 28 0.0006 35.4 9.8 68 147-214 415-491 (894)
404 PF12583 TPPII_N: Tripeptidyl 74.0 7.5 0.00016 30.4 4.7 47 146-192 75-121 (139)
405 COG5187 RPN7 26S proteasome re 73.9 44 0.00095 30.0 10.0 84 146-229 114-208 (412)
406 KOG3617 WD40 and TPR repeat-co 73.9 15 0.00033 37.3 7.8 56 150-207 829-884 (1416)
407 PF09670 Cas_Cas02710: CRISPR- 73.4 54 0.0012 30.0 11.1 52 125-176 143-198 (379)
408 TIGR00756 PPR pentatricopeptid 73.4 9.4 0.0002 20.9 4.1 27 184-210 3-29 (35)
409 cd02680 MIT_calpain7_2 MIT: do 72.6 8.8 0.00019 27.0 4.4 33 163-210 3-35 (75)
410 PRK15180 Vi polysaccharide bio 72.4 14 0.0003 35.3 6.9 86 129-214 339-424 (831)
411 KOG0687 26S proteasome regulat 72.3 35 0.00077 31.0 9.1 84 146-229 103-197 (393)
412 cd02677 MIT_SNX15 MIT: domain 72.2 6 0.00013 27.7 3.5 31 130-175 4-34 (75)
413 KOG0890 Protein kinase of the 72.0 44 0.00096 37.6 11.3 100 126-227 1683-1801(2382)
414 PF08631 SPO22: Meiosis protei 71.8 66 0.0014 27.9 13.4 85 128-212 51-152 (278)
415 cd02677 MIT_SNX15 MIT: domain 70.9 6.9 0.00015 27.4 3.6 16 163-178 3-18 (75)
416 PRK15490 Vi polysaccharide bio 70.8 16 0.00035 35.5 7.2 74 155-230 16-89 (578)
417 COG1747 Uncharacterized N-term 70.6 40 0.00086 32.6 9.5 78 130-210 83-160 (711)
418 PF14689 SPOB_a: Sensor_kinase 70.6 11 0.00024 25.2 4.4 36 140-175 16-51 (62)
419 PF04348 LppC: LppC putative l 70.2 1.4 3.1E-05 42.3 0.0 56 149-204 63-121 (536)
420 cd02683 MIT_1 MIT: domain cont 70.0 20 0.00043 25.1 5.8 40 159-198 18-64 (77)
421 PF08238 Sel1: Sel1 repeat; I 69.9 12 0.00026 21.5 4.2 14 163-176 24-37 (39)
422 KOG0739 AAA+-type ATPase [Post 69.1 31 0.00066 31.2 8.0 63 129-206 7-77 (439)
423 cd02683 MIT_1 MIT: domain cont 68.9 19 0.00042 25.2 5.6 58 163-228 3-62 (77)
424 PF13812 PPR_3: Pentatricopept 68.4 16 0.00035 20.1 4.4 28 183-210 3-30 (34)
425 PF13226 DUF4034: Domain of un 68.3 31 0.00068 30.4 7.9 68 131-198 61-150 (277)
426 KOG2300 Uncharacterized conser 68.2 1E+02 0.0022 29.6 11.6 29 186-214 93-122 (629)
427 KOG1497 COP9 signalosome, subu 68.1 40 0.00087 30.5 8.5 62 150-211 147-214 (399)
428 smart00671 SEL1 Sel1-like repe 67.6 11 0.00025 21.1 3.6 27 149-175 3-33 (36)
429 smart00745 MIT Microtubule Int 67.6 11 0.00025 25.8 4.2 17 159-175 20-36 (77)
430 PF10952 DUF2753: Protein of u 67.4 33 0.00071 26.7 6.9 65 150-214 4-87 (140)
431 KOG4014 Uncharacterized conser 67.3 73 0.0016 26.8 9.3 64 126-193 86-156 (248)
432 KOG2422 Uncharacterized conser 67.2 97 0.0021 30.3 11.4 94 119-213 348-451 (665)
433 KOG3783 Uncharacterized conser 67.0 1.2E+02 0.0026 29.3 11.9 81 130-212 250-334 (546)
434 KOG0686 COP9 signalosome, subu 66.1 46 0.00099 31.1 8.7 83 148-230 151-246 (466)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 65.9 58 0.0012 24.9 9.6 44 165-208 81-126 (126)
436 cd02656 MIT MIT: domain contai 65.2 14 0.0003 25.4 4.2 18 159-176 18-35 (75)
437 PF12753 Nro1: Nuclear pore co 65.2 9 0.00019 35.4 4.1 44 163-208 334-389 (404)
438 PF09670 Cas_Cas02710: CRISPR- 65.2 53 0.0011 30.1 9.2 61 151-211 135-199 (379)
439 PHA02537 M terminase endonucle 64.0 11 0.00023 32.3 4.1 89 126-214 96-211 (230)
440 PF09205 DUF1955: Domain of un 63.6 72 0.0016 25.4 8.2 51 127-177 100-150 (161)
441 PF12583 TPPII_N: Tripeptidyl 62.7 25 0.00055 27.5 5.5 33 191-223 86-118 (139)
442 TIGR03362 VI_chp_7 type VI sec 62.6 63 0.0014 28.8 8.9 61 152-212 218-281 (301)
443 TIGR02508 type_III_yscG type I 62.4 53 0.0011 24.7 6.9 65 139-208 30-95 (115)
444 cd02679 MIT_spastin MIT: domai 61.8 20 0.00043 25.4 4.5 32 129-175 5-36 (79)
445 PF07219 HemY_N: HemY protein 61.5 42 0.00092 24.8 6.6 46 183-228 61-106 (108)
446 KOG3783 Uncharacterized conser 60.8 88 0.0019 30.2 9.8 65 150-214 452-524 (546)
447 COG4941 Predicted RNA polymera 60.4 78 0.0017 29.0 8.9 40 180-219 364-403 (415)
448 PF04090 RNA_pol_I_TF: RNA pol 60.0 49 0.0011 27.7 7.2 68 147-214 41-109 (199)
449 PF13646 HEAT_2: HEAT repeats; 59.8 53 0.0011 22.4 7.5 66 145-214 12-77 (88)
450 KOG4151 Myosin assembly protei 59.5 26 0.00056 35.0 6.3 90 129-218 69-164 (748)
451 PF11349 DUF3151: Protein of u 59.5 71 0.0015 24.7 7.4 78 137-214 26-125 (129)
452 PF04212 MIT: MIT (microtubule 59.3 22 0.00048 23.9 4.4 41 188-228 12-61 (69)
453 KOG0292 Vesicle coat complex C 58.7 24 0.00052 36.0 5.9 67 128-207 658-724 (1202)
454 KOG0890 Protein kinase of the 58.7 44 0.00095 37.6 8.2 66 144-211 1667-1732(2382)
455 PRK07003 DNA polymerase III su 58.7 2.1E+02 0.0044 29.3 12.4 94 130-226 181-290 (830)
456 COG4649 Uncharacterized protei 58.4 77 0.0017 26.4 7.9 56 157-212 68-125 (221)
457 COG1747 Uncharacterized N-term 58.1 1.5E+02 0.0034 28.7 10.8 100 130-230 115-254 (711)
458 smart00745 MIT Microtubule Int 57.5 35 0.00077 23.3 5.2 44 129-180 5-48 (77)
459 cd00280 TRFH Telomeric Repeat 57.4 81 0.0018 26.3 7.9 68 163-231 85-160 (200)
460 KOG3807 Predicted membrane pro 57.3 38 0.00083 31.0 6.5 59 149-209 186-244 (556)
461 COG2015 Alkyl sulfatase and re 55.9 32 0.0007 32.8 6.0 53 148-200 453-505 (655)
462 PF14929 TAF1_subA: TAF RNA Po 55.2 1.4E+02 0.003 29.0 10.3 66 161-227 323-390 (547)
463 KOG2041 WD40 repeat protein [G 55.2 27 0.00058 35.0 5.5 72 127-206 748-821 (1189)
464 PF00244 14-3-3: 14-3-3 protei 55.0 76 0.0017 27.0 7.9 66 148-213 2-69 (236)
465 cd02656 MIT MIT: domain contai 54.1 40 0.00086 23.0 5.0 18 163-180 29-46 (75)
466 TIGR03362 VI_chp_7 type VI sec 54.0 1E+02 0.0022 27.4 8.7 37 159-195 111-147 (301)
467 KOG1839 Uncharacterized protei 53.8 48 0.001 35.1 7.4 93 135-227 960-1069(1236)
468 COG4499 Predicted membrane pro 52.9 1.1E+02 0.0024 28.3 8.8 74 127-206 262-338 (434)
469 PF09477 Type_III_YscG: Bacter 52.8 73 0.0016 24.2 6.4 47 154-200 13-59 (116)
470 cd02679 MIT_spastin MIT: domai 52.2 32 0.00069 24.4 4.3 18 161-178 3-20 (79)
471 COG5536 BET4 Protein prenyltra 52.1 42 0.0009 29.9 5.7 96 130-225 91-194 (328)
472 PF14276 DUF4363: Domain of un 51.7 98 0.0021 23.2 7.3 16 126-141 41-56 (121)
473 PF02184 HAT: HAT (Half-A-TPR) 51.1 39 0.00084 19.7 3.7 25 196-221 2-26 (32)
474 PF01239 PPTA: Protein prenylt 51.0 42 0.00092 18.6 4.6 22 167-188 3-24 (31)
475 PF04190 DUF410: Protein of un 50.7 82 0.0018 27.2 7.5 59 145-204 47-113 (260)
476 COG4259 Uncharacterized protei 50.5 90 0.0019 23.5 6.5 49 168-216 58-107 (121)
477 KOG4014 Uncharacterized conser 50.2 1.1E+02 0.0023 25.9 7.5 95 129-228 51-157 (248)
478 KOG1497 COP9 signalosome, subu 50.1 1.5E+02 0.0032 27.1 8.9 13 188-200 151-163 (399)
479 KOG0276 Vesicle coat complex C 50.0 1E+02 0.0023 30.4 8.5 65 143-207 662-747 (794)
480 cd02681 MIT_calpain7_1 MIT: do 50.0 44 0.00095 23.4 4.7 13 165-177 5-17 (76)
481 COG5107 RNA14 Pre-mRNA 3'-end 49.1 61 0.0013 30.9 6.6 72 134-208 289-360 (660)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 48.6 91 0.002 23.8 6.7 44 131-174 81-126 (126)
483 TIGR02710 CRISPR-associated pr 48.0 1.2E+02 0.0026 28.0 8.4 15 128-142 145-159 (380)
484 KOG0276 Vesicle coat complex C 46.9 1.2E+02 0.0026 30.0 8.3 71 129-208 623-693 (794)
485 PF12753 Nro1: Nuclear pore co 46.6 28 0.0006 32.2 4.0 31 130-162 335-365 (404)
486 TIGR02996 rpt_mate_G_obs repea 45.7 58 0.0013 20.2 4.1 29 170-198 5-33 (42)
487 KOG4279 Serine/threonine prote 45.5 21 0.00045 35.9 3.2 74 122-196 252-335 (1226)
488 COG4941 Predicted RNA polymera 45.3 1.1E+02 0.0024 28.0 7.4 44 147-190 365-408 (415)
489 TIGR02996 rpt_mate_G_obs repea 44.9 56 0.0012 20.3 4.0 33 134-166 3-35 (42)
490 KOG3616 Selective LIM binding 44.9 56 0.0012 33.1 5.9 70 125-204 777-847 (1636)
491 PF07163 Pex26: Pex26 protein; 44.6 2.3E+02 0.005 25.3 10.1 101 126-227 48-165 (309)
492 PF08771 Rapamycin_bind: Rapam 44.6 63 0.0014 23.8 5.0 78 151-228 18-97 (100)
493 PF10037 MRP-S27: Mitochondria 44.6 2.7E+02 0.0059 26.1 10.7 96 129-226 82-185 (429)
494 PF02064 MAS20: MAS20 protein 44.0 58 0.0013 25.0 4.9 29 151-179 67-95 (121)
495 COG3014 Uncharacterized protei 43.6 1.5E+02 0.0033 27.2 8.1 79 133-211 41-155 (449)
496 TIGR02710 CRISPR-associated pr 43.2 2.7E+02 0.0059 25.7 11.7 18 154-171 178-195 (380)
497 PF00244 14-3-3: 14-3-3 protei 43.0 1.2E+02 0.0026 25.8 7.3 46 164-209 143-197 (236)
498 COG5091 SGT1 Suppressor of G2 42.4 93 0.002 27.6 6.4 87 128-214 10-112 (368)
499 PF15297 CKAP2_C: Cytoskeleton 42.4 76 0.0016 28.9 6.1 63 130-192 120-186 (353)
500 COG5600 Transcription-associat 42.3 77 0.0017 29.3 6.1 62 152-213 182-252 (413)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=5.5e-15 Score=117.28 Aligned_cols=109 Identities=15% Similarity=0.033 Sum_probs=101.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
......+++++|+..|++++..+|.+.++|..+|.++.+.|++++|+.+|+++++++|+++.+++.+|.++..+|++++|
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 33445667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642 201 KRLFKDILKERPLLLRALHDLGRYVSMTL 229 (235)
Q Consensus 201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~ 229 (235)
+..|+++++.+|++..++..++.+.....
T Consensus 112 i~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 112 REAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999988887765543
No 2
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.64 E-value=3e-14 Score=118.91 Aligned_cols=108 Identities=13% Similarity=0.104 Sum_probs=100.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY-ELMGK--LSTAKR 202 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~-~~~g~--~~~A~~ 202 (235)
.++.++++..++++++.+|+|.++|..+|.+|...|++++|+.+|+++++++|++++.+..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 345688999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 203 LFKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
.++++++.+|++..+++.+|..+.+.++.++
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999888654
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=124.76 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=101.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
+.+|++|+..|.++++.+|+|+..|.+.+.+|.+.|.|+.|++..+.+|.+||.+..+|..+|.+|..+|++++|++.|+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 206 DILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 206 kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
++|++||++..+..+|..+-.+..+..
T Consensus 174 KaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 174 KALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988877776643
No 4
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.52 E-value=7.6e-13 Score=116.79 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=86.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.+.+++|+..|+++++.+|+++++|..+|.++...|++++|++.|+++++++|++..++.++|.+++..|++++|++.|+
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCH
Q 026642 206 DILKERPLLL 215 (235)
Q Consensus 206 kaL~~~P~~~ 215 (235)
++++.+|++.
T Consensus 157 ~al~~~P~~~ 166 (296)
T PRK11189 157 AFYQDDPNDP 166 (296)
T ss_pred HHHHhCCCCH
Confidence 9999999996
No 5
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.52 E-value=4.4e-13 Score=121.32 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=100.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
.....+++++|++.|+++++.+|+++.+|..+|.+|...|++++|+.+++++++++|+++.+++.+|.+|+.+|+|++|+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34446679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 202 RLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
..|+++++++|++..+...++.+..+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999998888888886555
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=1e-13 Score=109.95 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642 133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP 212 (235)
Q Consensus 133 ~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P 212 (235)
+..|+++++.+|++ +..+|..+...|++++|+.+|++++.++|++..+|..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 57889999999875 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhchhhcc
Q 026642 213 LLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 213 ~~~~a~~~l~~~~~~~~~~~~ 233 (235)
++..+++++|.++.+.++.++
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHH
Confidence 999999999999998887654
No 7
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.47 E-value=3.1e-12 Score=108.17 Aligned_cols=96 Identities=20% Similarity=0.176 Sum_probs=86.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--
Q 026642 123 RDALMGKSEVEEMFEKLLEKEPRNV---EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE---WKLLQALCYELM-- 194 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~P~~~---~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~---a~~~lA~~~~~~-- 194 (235)
....+++++|+..|+++++.+|+++ +++..+|.++.+.|++++|+..|+++++.+|+++. +++.+|.++...
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~ 122 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID 122 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence 3456789999999999999999876 68899999999999999999999999999998775 789999999887
Q ss_pred ------CCHHHHHHHHHHHHHHCCCCHHHH
Q 026642 195 ------GKLSTAKRLFKDILKERPLLLRAL 218 (235)
Q Consensus 195 ------g~~~~A~~~l~kaL~~~P~~~~a~ 218 (235)
|++++|++.|++++..+|++..++
T Consensus 123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 123 RVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 899999999999999999996543
No 8
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=3.6e-12 Score=104.53 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=75.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642 123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR 202 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~ 202 (235)
....+++++|++.++++++.+|++..++..+|.++...|++++|++.++++++.+|++..++..+|.++...|++++|++
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 33455677777777777777777777777777777777777777777777777777777777777777777777766666
Q ss_pred HHHHHHHHC--CCCHHHHHHHHHHHhhchh
Q 026642 203 LFKDILKER--PLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 203 ~l~kaL~~~--P~~~~a~~~l~~~~~~~~~ 230 (235)
.+++++... +.....+.+++.++...++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAGD 150 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence 666666532 3335556666666655554
No 9
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.45 E-value=8.8e-13 Score=102.01 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=91.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
+.......+++++|++.++++++.+|++.++|..+|.++...|++++|+.+++++++.+|+++..++.+|.+|...|+++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 33444456678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHH
Q 026642 199 TAKRLFKDILKERPLLLRA 217 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a 217 (235)
+|++.|+++++++|++...
T Consensus 103 ~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 103 SALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHhccccchH
Confidence 9999999999999999553
No 10
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=3.1e-12 Score=107.50 Aligned_cols=109 Identities=20% Similarity=0.147 Sum_probs=96.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
...+.+++..|..-++++|+.||++..+|..++.+|.+.|+.+.|-+.|++++.++|++.+.+++.|.-+..+|++++|.
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 44456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCC---HHHHHHHHHHHhhchhh
Q 026642 202 RLFKDILKERPLL---LRALHDLGRYVSMTLQI 231 (235)
Q Consensus 202 ~~l~kaL~~~P~~---~~a~~~l~~~~~~~~~~ 231 (235)
..|++++. +|.. ...+.|+|.|-.+.++.
T Consensus 124 q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 124 QQFERALA-DPAYGEPSDTLENLGLCALKAGQF 155 (250)
T ss_pred HHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCc
Confidence 99999874 5544 78888888887766653
No 11
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.44 E-value=4.3e-12 Score=98.15 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=95.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642 134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPL 213 (235)
Q Consensus 134 ~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~ 213 (235)
+.|+++++.+|++.++...+|..+.+.|++++|++.+++++..+|+++.++..+|.++..+|++++|.+.++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhchhhcc
Q 026642 214 LLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 214 ~~~a~~~l~~~~~~~~~~~~ 233 (235)
+...++.+|.++...++.++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~ 103 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPES 103 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHH
Confidence 99999999999998887543
No 12
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.44 E-value=6.5e-13 Score=91.53 Aligned_cols=68 Identities=29% Similarity=0.414 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCC
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG-KLSTAKRLFKDILKERP 212 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g-~~~~A~~~l~kaL~~~P 212 (235)
++++.|..+|..++..|++++|+.+|+++++++|+++.+++++|.+|..+| ++++|++.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 468999999999999999999999999999999999999999999999999 79999999999999998
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.43 E-value=2.2e-12 Score=124.19 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
+++++|+..|+++++.+|++..+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|+.+|++
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHCCCCHHHHHHHHHHHhhchh
Q 026642 207 ILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
+++++|++..++.++|.++.+.++
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCC
Confidence 555555555555555555544443
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.42 E-value=5.1e-12 Score=121.71 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=104.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
.....+++++|+..|+++++.+|+++++|..+|.++...|++++|+.+|+++++++|++..++..+|.++..+|++++|+
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 33456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 202 RLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
..|+++++.+|++..++..+|.++...++.+
T Consensus 454 ~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 454 ATFRRCKKNFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 9999999999999999999999998877643
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=2.6e-12 Score=122.46 Aligned_cols=95 Identities=18% Similarity=0.044 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
+++|+..++++++.+|++++++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|+..+++++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHCCCCHHHHHHHHH
Q 026642 209 KERPLLLRALHDLGR 223 (235)
Q Consensus 209 ~~~P~~~~a~~~l~~ 223 (235)
+++|++..+++.++.
T Consensus 400 ~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 400 KLDPTRAAAGITKLW 414 (553)
T ss_pred hcCCCChhhHHHHHH
Confidence 777777655444433
No 16
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.40 E-value=1e-11 Score=99.44 Aligned_cols=97 Identities=11% Similarity=0.037 Sum_probs=90.7
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 026642 115 ASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM 194 (235)
Q Consensus 115 ~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~ 194 (235)
..-.+.-.....+++++|+..|+-+...||.+.+.|++||.++...|+|++|+++|.+++.++|++++.+.+.|.||...
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 33445566777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHC
Q 026642 195 GKLSTAKRLFKDILKER 211 (235)
Q Consensus 195 g~~~~A~~~l~kaL~~~ 211 (235)
|+.++|++.|+.++..-
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999877
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=7.1e-12 Score=119.50 Aligned_cols=111 Identities=11% Similarity=0.013 Sum_probs=100.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
-....+++++|+..|+++++.+|++++++..+|.++...|++++|+.+++++++++|+++.++..++.+++..|++++|+
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHH
Confidence 33445678999999999999999999999999999999999999999999999999999988888888888999999999
Q ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHhhchhhc
Q 026642 202 RLFKDILKER-PLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 202 ~~l~kaL~~~-P~~~~a~~~l~~~~~~~~~~~ 232 (235)
+.++++++.. |++..++..+|.++...++.+
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 9999999885 788999999999998877644
No 18
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.3e-11 Score=107.46 Aligned_cols=106 Identities=19% Similarity=0.167 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK---LSTAKRL 203 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~---~~~A~~~ 203 (235)
.+.++.+..++..|..||+|++.|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.+++.+.+ ..++.+.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999999999887754 5789999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 204 FKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
+++++++||+|+++++-|+..+...++.+
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~ 244 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYA 244 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHH
Confidence 99999999999999999999988877754
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.38 E-value=3.3e-12 Score=119.70 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
.|-|+..|+++++.+|+.++|+.++|..+-..|+-.||+++|.+++++.|+.+++.+++|.+|.++|.+++|...|++++
T Consensus 302 ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHCCCCHHHHHHHHHHHhhchh
Q 026642 209 KERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 209 ~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
+..|....++.+|+.+|.+++.
T Consensus 382 ~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 382 EVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred hhChhhhhhhhhHHHHHHhccc
Confidence 5555555555555555555444
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.38 E-value=2.9e-12 Score=120.05 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=81.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
+.....+.+..++|...|+++++..|+.+.+..+||.+|.++|++++|+.+|+++++++|..++++.++|.+|..+|+.+
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 33333333446777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
+|+.+|++++..+|..++++.+|+.+|...+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 77777777777777777777777777765554
No 21
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=1.6e-11 Score=119.57 Aligned_cols=118 Identities=12% Similarity=0.142 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642 117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK 196 (235)
Q Consensus 117 ~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~ 196 (235)
..+.+-....+.+++|+++++.+++..|++..++..++.++.+.+++++|+..++++++.+|+++.+++.+|.++...|+
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Confidence 34555666677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhccc
Q 026642 197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSL 234 (235)
Q Consensus 197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~~ 234 (235)
+++|.+.|++++..+|++..++.++|.++...++.+++
T Consensus 170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999988886653
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.35 E-value=2.3e-11 Score=122.45 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=100.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
..+++++|+..|+++++.+|+ ++++..+|.++.+.|++++|+.+|+++++++|+++.++.++|.++...|++++|++.|
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 347899999999999999996 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 205 KDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
+++++.+|++..+++++|.++.+.++.++
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999998887543
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=1.7e-11 Score=108.24 Aligned_cols=104 Identities=11% Similarity=0.052 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEP----RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P----~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
.+.++..+.+++...+ +.++.|..+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...|++++|++.|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5778899999996443 347789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 205 KDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
+++++++|++..++.++|.++...++.+
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999988766544
No 24
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.34 E-value=9.9e-12 Score=99.47 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=88.8
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Q 026642 139 LLEKE-PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRA 217 (235)
Q Consensus 139 aL~~~-P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a 217 (235)
+...+ +++.+..+.+|..+...|++++|+..|+-+..+||.+.++|++||.|+..+|+|++|++.|.+++.++|++++.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 44556 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhc
Q 026642 218 LHDLGRYVSMTLQIQ 232 (235)
Q Consensus 218 ~~~l~~~~~~~~~~~ 232 (235)
+++.|.++.+.++..
T Consensus 106 ~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 106 PWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHHHHcCCHH
Confidence 999999999888754
No 25
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.32 E-value=4.3e-11 Score=99.91 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=85.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642 123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQG-NMRRGR--NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST 199 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~-~~~~g~--~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~ 199 (235)
....+++++|+..|+++++.+|++++++..+|.+ +...|+ +++|++.++++++++|+++.++.++|.++...|++++
T Consensus 83 ~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 83 YLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Confidence 3346678999999999999999999999999997 477787 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCC
Q 026642 200 AKRLFKDILKERPLL 214 (235)
Q Consensus 200 A~~~l~kaL~~~P~~ 214 (235)
|+..|+++++.+|.+
T Consensus 163 Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 163 AIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHhhCCCC
Confidence 999999999999987
No 26
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.31 E-value=1.1e-11 Score=84.56 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 026642 152 VVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLL 215 (235)
Q Consensus 152 ~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~ 215 (235)
.+|..+++.|++++|+..|+++++.+|+++++|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999974
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=1.3e-10 Score=95.22 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=94.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHH
Q 026642 121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--PNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--P~~~~a~~~lA~~~~~~g~~~ 198 (235)
.-....+++++|++.++++++.+|++..++..+|.++...|++++|++.++++++.. +.....+..+|.++...|+++
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 334445678899999999999999999999999999999999999999999998754 455678888899999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
+|.+.++++++.+|++..++..++.++.+.++..
T Consensus 153 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999998888888888888776643
No 28
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.30 E-value=1.3e-10 Score=87.00 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=87.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCC
Q 026642 123 RDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGK 196 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~ 196 (235)
....+++++|++.|+++++.+|++ .+++..+|.++.+.|++++|+++|++++..+|++ +.+++.+|.++..+|+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence 344567999999999999999877 6799999999999999999999999999999885 6789999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHH
Q 026642 197 LSTAKRLFKDILKERPLLLRALH 219 (235)
Q Consensus 197 ~~~A~~~l~kaL~~~P~~~~a~~ 219 (235)
+++|.+.++++++..|++..+..
T Consensus 92 ~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 92 KEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred hHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999999999966543
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=1.8e-11 Score=106.61 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=94.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
.-....++.++|++.|+++++.+|+|.+++..++.+++..|+++++.+.++...+..|+++..|..+|.+|..+|++++|
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 33445566899999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhhchhhccc
Q 026642 201 KRLFKDILKERPLLLRALHDLGRYVSMTLQIQSL 234 (235)
Q Consensus 201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~~ 234 (235)
...|+++++.+|+|+..+..++.++.+.++.+++
T Consensus 234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999998887654
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.6e-11 Score=110.40 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
-++|+..|+++|+.||+...+|..+|.-|+.+++...|++.|++|++.+|.|.++|+.+|++|..++-..=|.-+|++++
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 209 KERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 209 ~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
++.|+|.+.|..+|.+|.+.+..++
T Consensus 426 ~~kPnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred hcCCCchHHHHHHHHHHHHhccHHH
Confidence 9999999999999999988876544
No 31
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.28 E-value=9.6e-11 Score=100.00 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=104.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
+....-..+++.+|+..+++++..+|+|.++|..+|.+|.+.|++++|-..|.+++++.|+++.+..++|..|+-.||++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 44455556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
.|..++.++...-+.+..+..+++++....++..
T Consensus 186 ~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 186 DAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 9999999999888889999999999988777644
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.28 E-value=8.3e-11 Score=114.38 Aligned_cols=107 Identities=19% Similarity=0.117 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKE----ALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~e----Ai~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
..+++++|++.|+++++.+|+++.++..+|.++...|++++ |+..|+++++++|+++.++..+|.++...|++++|
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKA 303 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34556677777777777777777777777777777777664 67777777777777777777777777777777777
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 201 KRLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
+..++++++++|++..++..++.++.+.++.
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 7777777777777766666666666665553
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.27 E-value=8.7e-11 Score=118.28 Aligned_cols=113 Identities=9% Similarity=-0.005 Sum_probs=104.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
+.......+++++|++.|+++++.+|++++++..+|.++...|++++|++.|+++++++|+++.+++++|.++..+|+++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 33444556778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
+|++.|+++++++|++.......|.+..+++..
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHH
Confidence 999999999999999999998888887777643
No 34
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.27 E-value=1.7e-11 Score=87.98 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPR--NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~--~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
.+++++|+..++++++.+|. +...+..+|.+|++.|+|++|+..+++ .+.++.+...++.+|.++..+|+|++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45689999999999999995 567888899999999999999999999 889999999999999999999999999999
Q ss_pred HHHH
Q 026642 204 FKDI 207 (235)
Q Consensus 204 l~ka 207 (235)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 35
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.25 E-value=1.6e-10 Score=112.44 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=98.8
Q ss_pred HHhcCCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 123 RDALMGKS----EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 123 ~~~~~~~~----eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
....++++ +|+..|+++++.+|+++.++..+|.++.+.|++++|+.+++++++++|+++.++..+|.+|...|+++
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 33445555 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
+|++.|+++++.+|++..++..++.++.+.++.+
T Consensus 336 eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~d 369 (656)
T PRK15174 336 AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTS 369 (656)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999877777787777766644
No 36
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.22 E-value=2.3e-10 Score=79.43 Aligned_cols=88 Identities=26% Similarity=0.380 Sum_probs=82.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.+++++|+..++++++.+|++..++..+|.++...|++++|+++++++++..|.+..++..+|.++...|++++|.+.++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCC
Q 026642 206 DILKERPL 213 (235)
Q Consensus 206 kaL~~~P~ 213 (235)
++++.+|+
T Consensus 93 ~~~~~~~~ 100 (100)
T cd00189 93 KALELDPN 100 (100)
T ss_pred HHHccCCC
Confidence 99988874
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.22 E-value=3.3e-10 Score=111.95 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=105.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026642 116 SENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG 195 (235)
Q Consensus 116 ~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g 195 (235)
...+.......+++++|++.|+++++.+|++++++..++.++...|++++|+..++++++.+|+++. +..+|.++...|
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 3445555666778999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 196 KLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 196 ~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
++++|+..|+++++.+|++..++..++.++.+.++.
T Consensus 131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999999999999999888765543
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=2.2e-11 Score=114.60 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+.+.|++.|++++..||+++.+|..+|.-+....++|.|..+|++++..+|.+..||+.+|.+|..+++++.|.-.|++|
T Consensus 436 dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA 515 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA 515 (638)
T ss_pred HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhh
Confidence 35677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 208 LKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
++.+|.+...+..+|..+++.++.+
T Consensus 516 ~~INP~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 516 VEINPSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred hcCCccchhHHhhhhHHHHHhhhhh
Confidence 7777776666666666666555544
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=1.5e-11 Score=115.80 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=92.9
Q ss_pred HHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 130 SEVEEMF-EKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 130 ~eA~~~~-e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
+-+...+ +..++.+|+.++.|..+|.+|--+++++.|++++++++.+||++..+|.++|.=+....++|+|++.|+++|
T Consensus 403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 3344444 446778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHhhchhh
Q 026642 209 KERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 209 ~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
..+|++-.||||+|++|.|.++.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred cCCchhhHHHHhhhhheeccchh
Confidence 99999999999999999998864
No 40
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.19 E-value=1.6e-10 Score=80.30 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=65.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642 153 VMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223 (235)
Q Consensus 153 la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~ 223 (235)
|..+|++.++|++|+++++++++++|+++.+|..+|.+|..+|++++|.+.|+++++.+|++..+..-.++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999777665554
No 41
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=6.8e-11 Score=109.95 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
..-.+.|-++...+| .|++.+..||.+|.-.|+|+.|++||+.|+..+|+|...|+.||..+....+.++|+..|+++
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 344577888888888 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 208 LKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
|++.|+++++++++|..|+..+...+
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHH
Confidence 99999999999999999998887544
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.1e-10 Score=105.90 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.+++.+|+..|.++++.+|+|+.++.++|.+|.+.|++.+|+...+++++++|++..+|+..|.++..+.+|++|.+.|+
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHhh
Q 026642 206 DILKERPLLLRALHDLGRYVSM 227 (235)
Q Consensus 206 kaL~~~P~~~~a~~~l~~~~~~ 227 (235)
++++.||++.++..++..++..
T Consensus 451 eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999888888774
No 43
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.17 E-value=5.6e-10 Score=114.76 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=91.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-------------
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC------------- 190 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~------------- 190 (235)
...+++++|++.|+++++.+|++..++..+|.++...|++++|+++|+++++++|++..++..++.+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999887766554443
Q ss_pred -----------------------------HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 191 -----------------------------YELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 191 -----------------------------~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
+...|++++|++.|+++++.+|++..+++.++.+|.+.++.++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4467899999999999999999999899999998888776543
No 44
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=7.1e-11 Score=109.83 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=95.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
-.+-.+++++|+.+|+.+|..+|+|...|..||..+....+.+|||..|++|+++.|.++++++++|..++.+|.|++|+
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 33445568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCC------------HHHHHHHHHHHhhchh
Q 026642 202 RLFKDILKERPLL------------LRALHDLGRYVSMTLQ 230 (235)
Q Consensus 202 ~~l~kaL~~~P~~------------~~a~~~l~~~~~~~~~ 230 (235)
++|-.+|.+.+.. +-....+++....+.|
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9999999988771 2223446666666555
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.5e-10 Score=102.49 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+...|++.|+.|++.+|.|-.||++||+.|.-.+-..=|+-+|++++++.|+|...|..+|.||...++.++|+++|.++
T Consensus 379 Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 208 LKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
+.....+..++..+|.+|.+..+..+
T Consensus 459 i~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 459 ILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HhccccchHHHHHHHHHHHHHHhHHH
Confidence 99998889999999999998887543
No 46
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=4.6e-10 Score=94.51 Aligned_cols=106 Identities=23% Similarity=0.252 Sum_probs=97.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN---EVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~---~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
..++.+.|.+.|++++..+|++.+++++.|.-++.+|++++|..+|++++. +|. -...+.++|.|...+|+++.|.
T Consensus 81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence 345568899999999999999999999999999999999999999999998 355 4678999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 202 RLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
++|+++|+.+|++..+...++....+.++.
T Consensus 160 ~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 160 EYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 999999999999999999999888887764
No 47
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.17 E-value=9.6e-10 Score=95.68 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=87.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLST 199 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~ 199 (235)
.+++++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++.+|.++..+|++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 467999999999999999998 5899999999999999999999999999998884 7899999999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHH
Q 026642 200 AKRLFKDILKERPLLLRALH 219 (235)
Q Consensus 200 A~~~l~kaL~~~P~~~~a~~ 219 (235)
|++.|+++++.+|+...+-.
T Consensus 236 A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 236 AKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHHHHCcCCHHHHH
Confidence 99999999999999965443
No 48
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.16 E-value=4.8e-09 Score=90.30 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=80.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcC
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEAL---KVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMG 195 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~---~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g 195 (235)
.....+++++|++.|++++...|+...+. ..+|.+|++.|++++|+..+++.++++|++ +.+++.+|.++...+
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 34446789999999999999999987665 889999999999999999999999999987 467889998875554
Q ss_pred C------------------HHHHHHHHHHHHHHCCCC
Q 026642 196 K------------------LSTAKRLFKDILKERPLL 214 (235)
Q Consensus 196 ~------------------~~~A~~~l~kaL~~~P~~ 214 (235)
+ ..+|++.|+++++..|+.
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 1 247889999999999998
No 49
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.15 E-value=4.7e-10 Score=115.34 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=87.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------H--HHHHHH
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE------------W--KLLQAL 189 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~------------a--~~~lA~ 189 (235)
...+++++|+..|+++++.+|++++++..+|.+|.++|++++|+.+|+++++++|++.. + ...+|.
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999887642 1 123466
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 190 CYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 190 ~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
++...|++++|++.|+++++.+|++..++.++|.++.+.++.+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 7777777888888888887777777777777777777766543
No 50
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.15 E-value=5.2e-10 Score=95.54 Aligned_cols=105 Identities=17% Similarity=0.273 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
-+.+.....+.+..+|.|.+.+..+|...++.|+|.+|+..+.++..++|+|.++|..+|.+|.+.|++++|...|.+++
T Consensus 82 a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 82 ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 34556667777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 209 KERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 209 ~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
++.|++..++-|+++.|.-.+|.+.
T Consensus 162 ~L~~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 162 ELAPNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred HhccCCchhhhhHHHHHHHcCCHHH
Confidence 9999999999999999988887653
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.15 E-value=9.5e-10 Score=106.92 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=82.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.+++++|++.|+++++.+|+++.++..++.++...|+ ++|+..+++++++.|+++..+..+|.++...|++++|++.|+
T Consensus 783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556777777777777777777777777777777777 667777777777777777777778888888888888888888
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 206 DILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 206 kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
++++.+|.+..++..++.++.+.++..
T Consensus 862 ~a~~~~~~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 862 KAVNIAPEAAAIRYHLALALLATGRKA 888 (899)
T ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence 888888888888888888887776644
No 52
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.13 E-value=1.1e-09 Score=106.36 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=91.8
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
...+++++|+..|+++++.+|++.+++..++.++...|++++|++.++++++.+|++..++..+|.++...|++++|.+.
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 215 (899)
T TIGR02917 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 33566788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 204 FKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
|+++++.+|++..++..++.++...++.
T Consensus 216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~ 243 (899)
T TIGR02917 216 YRKAIALRPNNPAVLLALATILIEAGEF 243 (899)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 8888888888888888888887766553
No 53
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=9.5e-10 Score=100.84 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=104.0
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
.....+++|+..+.+.++..|+|+..+...+.++++.|+.++|++.+++++.++|+.+..++++|.+|...|++.+|+..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 204 FKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
++..+..+|+++..|..|+..|...++..+
T Consensus 397 L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 397 LNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 999999999999999999999999887543
No 54
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.12 E-value=2.2e-10 Score=78.45 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=42.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642 158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222 (235)
Q Consensus 158 ~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~ 222 (235)
++.|++++|++.|+++++.+|++.++++.+|.+|...|++++|.+.+++++..+|++..++.-++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45666667777777777777776666666777777777777777777777666666655544433
No 55
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=2.7e-10 Score=99.03 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~ 226 (235)
++-+..-|.-.++.++|++|+..|.+||+++|+++.+|.++|.+|..+|+|+.|++.++.+|.+||.+.++|..+|++|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45566778889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hchhhc
Q 026642 227 MTLQIQ 232 (235)
Q Consensus 227 ~~~~~~ 232 (235)
..++.+
T Consensus 161 ~~gk~~ 166 (304)
T KOG0553|consen 161 ALGKYE 166 (304)
T ss_pred ccCcHH
Confidence 876644
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=2.2e-09 Score=90.66 Aligned_cols=112 Identities=19% Similarity=0.100 Sum_probs=97.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH------
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVE---ALKVVMQGNMRR--------GRNKEALEFVKRLIDIEPNEVEWK------ 184 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~---a~~~la~~~~~~--------g~~~eAi~~l~kai~l~P~~~~a~------ 184 (235)
.....+++++|+..|+++++.+|+++. ++..+|.++.+. |++++|++.++++++.+|++..++
T Consensus 79 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 79 AYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 334456789999999999999998887 799999999986 889999999999999999986543
Q ss_pred -----------HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhchhhcc
Q 026642 185 -----------LLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 185 -----------~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~l~~~~~~~~~~~~ 233 (235)
..+|.+|...|++++|+..|+++++..|++ ..+++.+|.++.+.++..+
T Consensus 159 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 159 DYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence 356888999999999999999999998765 6899999999999888554
No 57
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.10 E-value=1.8e-09 Score=107.06 Aligned_cols=110 Identities=13% Similarity=0.033 Sum_probs=92.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
-..+++++|++.|+++++.+|+++.+...++.++...|+.++|+.++++++.-+|........+|.+|..+|++++|++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567899999999999999999755558899999999999999999999933333444444558899999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 204 FKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
|+++++.+|++..++.++++.+...++.++
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~e 154 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGV 154 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHH
Confidence 999999999999999999998888776554
No 58
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.09 E-value=2.3e-09 Score=96.72 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNV-----EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR 202 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~-----~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~ 202 (235)
++++|++.++++++.+|.+. ..+..+|.++.+.|++++|+.+++++++.+|++..+++.+|.+|...|++++|++
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555555555554444332 1333445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHCCCC-HHHHHHHHHHHhhchh
Q 026642 203 LFKDILKERPLL-LRALHDLGRYVSMTLQ 230 (235)
Q Consensus 203 ~l~kaL~~~P~~-~~a~~~l~~~~~~~~~ 230 (235)
.++++++.+|++ ..++..++.+|.+.++
T Consensus 236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 236 ALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 555555555544 2334444444444433
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.09 E-value=3.1e-09 Score=105.12 Aligned_cols=121 Identities=11% Similarity=0.033 Sum_probs=111.4
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642 112 KMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY 191 (235)
Q Consensus 112 ~~~~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~ 191 (235)
....+..+.+-....++.++|++.++++...+|.++.++..+|.++...|++++|++.|+++++++|+++.++..+|.++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33455667777788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 192 ELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 192 ~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
...|++++|+..++++++.+|++.. +..++.++.+.++..+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~ 134 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWD 134 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999 9999999988877543
No 60
>PLN02789 farnesyltranstransferase
Probab=99.08 E-value=2.5e-09 Score=95.53 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRN--KEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~--~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.+++++..++++++.+|++..+|..++.++.+.|+. ++++++++++++.+|.+..+|..++.++...|++++|++.++
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 368999999999999999999999999999888874 788999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhc
Q 026642 206 DILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 206 kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
++|+.+|.|..+|..++.+..+.
T Consensus 167 ~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 167 QLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999887765
No 61
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.08 E-value=3.2e-09 Score=95.70 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=91.8
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTAKR 202 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A~~ 202 (235)
...+++++|++.|+++++.+|++.+++..+|.++.+.|++++|++.++++++.+|++ ..++..++.+|...|++++|..
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345678999999999999999999999999999999999999999999999998877 4667888999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 203 LFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
.++++++.+|+...+ ..++.++.+.++.+
T Consensus 271 ~l~~~~~~~p~~~~~-~~la~~~~~~g~~~ 299 (389)
T PRK11788 271 FLRRALEEYPGADLL-LALAQLLEEQEGPE 299 (389)
T ss_pred HHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence 999999999987443 77777777766543
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=4.1e-09 Score=102.83 Aligned_cols=111 Identities=14% Similarity=-0.024 Sum_probs=100.0
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642 114 RASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL 193 (235)
Q Consensus 114 ~~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~ 193 (235)
.+...+.......+.+++|...+++++..+|++++++..+|.++.+.|++++|+.+|+++++.+|+++.++..+|.++..
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455666667777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642 194 MGKLSTAKRLFKDILKERPLLLRALHDLGRY 224 (235)
Q Consensus 194 ~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~ 224 (235)
.|+.++|...|+++++..-+-.+.|-++..-
T Consensus 201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (694)
T PRK15179 201 RGALWRARDVLQAGLDAIGDGARKLTRRLVD 231 (694)
T ss_pred cCCHHHHHHHHHHHHHhhCcchHHHHHHHHH
Confidence 9999999999999999988877776555443
No 63
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.06 E-value=1.4e-09 Score=75.31 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
++..+|..+...|++++|+..++++++..|++..++..+|.++...|++++|++.+++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hhhc
Q 026642 229 LQIQ 232 (235)
Q Consensus 229 ~~~~ 232 (235)
++..
T Consensus 82 ~~~~ 85 (100)
T cd00189 82 GKYE 85 (100)
T ss_pred HhHH
Confidence 6643
No 64
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=3.5e-09 Score=94.65 Aligned_cols=106 Identities=10% Similarity=0.019 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG-RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL--STAKR 202 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g-~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~--~~A~~ 202 (235)
.+..++|+..+.++++.+|++..+|..++.++...| ++++|+.+++++++.+|++..+|..++.++..+|+. +++.+
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 345789999999999999999999999999999998 689999999999999999999999999999999984 78899
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 203 LFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
.++++++.+|+|..+|..++.++.+.++-
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999998877653
No 65
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.05 E-value=7.7e-09 Score=83.95 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=84.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-
Q 026642 121 EKRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK- 196 (235)
Q Consensus 121 e~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~- 196 (235)
......+++++|+..|+++++.+|+. ..++..+|.++...|++++|+.+++++++.+|++..++..+|.+|...|+
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 43 MSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence 33444677999999999999887653 57999999999999999999999999999999999999999999999998
Q ss_pred -------------HHHHHHHHHHHHHHCCCC
Q 026642 197 -------------LSTAKRLFKDILKERPLL 214 (235)
Q Consensus 197 -------------~~~A~~~l~kaL~~~P~~ 214 (235)
+++|.+.+++++..+|++
T Consensus 123 ~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 123 AEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 688999999999999998
No 66
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.04 E-value=7e-09 Score=83.74 Aligned_cols=92 Identities=14% Similarity=0.055 Sum_probs=80.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------H
Q 026642 124 DALMGKSEVEEMFEKLLEKEPR---NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE-------L 193 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~---~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~-------~ 193 (235)
...+++++|+..|++++...|+ .+.+|..+|.++...|++++|+++++++++++|.+...+..+|.++. .
T Consensus 46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~ 125 (168)
T CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE 125 (168)
T ss_pred HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH
Confidence 3456689999999999988765 34689999999999999999999999999999999999999999999 7
Q ss_pred cCCHH-------HHHHHHHHHHHHCCCCH
Q 026642 194 MGKLS-------TAKRLFKDILKERPLLL 215 (235)
Q Consensus 194 ~g~~~-------~A~~~l~kaL~~~P~~~ 215 (235)
+|+++ +|+..|++++..+|++.
T Consensus 126 ~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 126 QGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 77766 77778888999999773
No 67
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=6.2e-09 Score=88.84 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
+.+++|++.|+..|+.||.|...+.....+.-.+|+.-+||+.+.+.++..++|.++|..++.+|...|+|++|.-+|++
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 34666666666666666666666555555555556555666666666666666666666666666666666666666666
Q ss_pred HHHHCCCCHHHHHHHHHHH
Q 026642 207 ILKERPLLLRALHDLGRYV 225 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~ 225 (235)
++-..|.+...+..++.++
T Consensus 180 ~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHcCCCcHHHHHHHHHHH
Confidence 6666666655555555543
No 68
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.03 E-value=9.4e-10 Score=75.26 Aligned_cols=65 Identities=31% Similarity=0.454 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~ 190 (235)
.+++++|++.|+++++.+|++.+++..+|.+|++.|++++|.+.+++++..+|+++.++..+|.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 45589999999999999999999999999999999999999999999999999999999888864
No 69
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.02 E-value=4.4e-09 Score=78.63 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHH
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHD 220 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~ 220 (235)
++.++.+|..+.+.|++++|++.|+++++.+|++ ..+++.+|.++...|++++|++.|++++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5788999999999999999999999999999987 5789999999999999999999999999999986 678999
Q ss_pred HHHHHhhchhhc
Q 026642 221 LGRYVSMTLQIQ 232 (235)
Q Consensus 221 l~~~~~~~~~~~ 232 (235)
++.++.+.++..
T Consensus 82 ~~~~~~~~~~~~ 93 (119)
T TIGR02795 82 LGMSLQELGDKE 93 (119)
T ss_pred HHHHHHHhCChH
Confidence 999988776643
No 70
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=6e-09 Score=88.93 Aligned_cols=101 Identities=22% Similarity=0.173 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK---LSTAKRLF 204 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~---~~~A~~~l 204 (235)
...+|++.+.+.++.-++|.++|..++.+|+..|+|+.|.-||++++-++|-++.+...+|.+++.+|- ++-|.++|
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999999999886 56799999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 205 KDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 205 ~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
.+++++.|.+.++++|+-++....
T Consensus 215 ~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHhChHhHHHHHHHHHHHHHH
Confidence 999999999999999998886543
No 71
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.02 E-value=2.4e-09 Score=96.96 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL 229 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~ 229 (235)
+...|..++..|+|++|++.|+++++++|+++.+++.+|.+|..+|++++|+.+++++++++|++..+|+.+|.++.+.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhc
Q 026642 230 QIQ 232 (235)
Q Consensus 230 ~~~ 232 (235)
+..
T Consensus 85 ~~~ 87 (356)
T PLN03088 85 EYQ 87 (356)
T ss_pred CHH
Confidence 754
No 72
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.00 E-value=1.9e-09 Score=93.81 Aligned_cols=110 Identities=20% Similarity=0.184 Sum_probs=84.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 123 RDALMGKSEVEEMFEKLLEKE--PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~--P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
....++++++++.++++.+.. +.++..|..+|.++.+.|++++|+++|+++++++|++..++..++.++...|+++++
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH
Confidence 344556788888888866544 678888888999999999999999999999999999999888888888888999988
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 201 KRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
.+.++...+..|++...+..+|.+|...++.+
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence 88888888888888778888888887776644
No 73
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=8.6e-09 Score=83.66 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Q 026642 143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALH 219 (235)
Q Consensus 143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~ 219 (235)
++..+.++..+|..+...|++++|+.+|+++++.+|+. ..++..+|.++...|++++|+..|++++..+|++..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 44677789999999999999999999999999987764 468999999999999999999999999999999999999
Q ss_pred HHHHHHhhchh
Q 026642 220 DLGRYVSMTLQ 230 (235)
Q Consensus 220 ~l~~~~~~~~~ 230 (235)
.+|.++...++
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 99999887665
No 74
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=7.4e-09 Score=91.90 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=95.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
+..+....+.+..|...|..+++.||++-.+++..|-+|+..|+-..|+..+++++++.|+...++..+|.++..+|+++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 44555566678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCC---HHHHHHHHHH
Q 026642 199 TAKRLFKDILKERPLL---LRALHDLGRY 224 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~---~~a~~~l~~~ 224 (235)
+|...|+++|+-+|.+ ..+...++..
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALI 152 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence 9999999999999966 4555555544
No 75
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.99 E-value=2.5e-09 Score=98.18 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=66.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 142 KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEW---KLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 142 ~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a---~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
.+|+++++|.++|.+|++.|+|++|+.+|+++++++|++.++ |+++|.+|..+|++++|+++|++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999865 9999999999999999999999999973
No 76
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7e-09 Score=93.50 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEP----RN-----------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY 191 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P----~~-----------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~ 191 (235)
+.+..|...|++++..=. .+ ..++.+++.+|.+.++|.+|++..+++++++|+|+.+++++|+++
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~ 301 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL 301 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 357888889888776411 11 245788999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 192 ELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 192 ~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
..+|+|+.|+..|+++++++|+|-.+...+..+-.+..+
T Consensus 302 l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 302 LALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888877655443
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.98 E-value=2.4e-09 Score=72.76 Aligned_cols=58 Identities=26% Similarity=0.400 Sum_probs=52.5
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV 181 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~ 181 (235)
...+++++|++.|+++++.+|+++++|..+|.++..+|++++|+.+|+++++++|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3345599999999999999999999999999999999999999999999999999975
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.8e-09 Score=97.73 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=97.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.++++.|+..|.+++.++|.|.-.+.+....|...|+|++|++.-.+.++++|+.+.+|..+|.++..+|+|++|+..|.
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHh
Q 026642 206 DILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 206 kaL~~~P~~~~a~~~l~~~~~ 226 (235)
+.|+.+|+|...+-|++.++.
T Consensus 95 ~GL~~d~~n~~L~~gl~~a~~ 115 (539)
T KOG0548|consen 95 EGLEKDPSNKQLKTGLAQAYL 115 (539)
T ss_pred HHhhcCCchHHHHHhHHHhhh
Confidence 999999999999999999883
No 79
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.97 E-value=7.4e-09 Score=83.59 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRN--VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~--~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
..+...+...++.+..+ +..|..+|..+...|++++|+..|++++.+.|+. +.++.++|.+|...|++++|++.|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445555555555555 6778999999999999999999999999997763 468999999999999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHh
Q 026642 205 KDILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 205 ~kaL~~~P~~~~a~~~l~~~~~ 226 (235)
++++..+|.+...+.+++.++.
T Consensus 96 ~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHHHH
Confidence 9999999999999999999988
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.6e-09 Score=97.18 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+.++-...|.++...||+|++.|+-.|++++-.+++++|+..|+++++++|+++.++..++.+++.+++++++++.|+.+
T Consensus 375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHhhchh
Q 026642 208 LKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
.+..|+.++++--.+.++..+.+
T Consensus 455 kkkFP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 455 KKKFPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHhCCCCchHHHHHHHHHhhHHh
Confidence 99999997777666666555444
No 81
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3e-09 Score=97.69 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
++..+|.+.|.++++.+|.+...|..++.+|++.++-++-+..++++.++||++++.|+.+|+++.-+++|++|+..|++
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 207 ILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
++.++|.++-++..++.+..+.+..
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~ 444 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKI 444 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999998887776643
No 82
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.94 E-value=2.2e-08 Score=97.29 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=97.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.+++++|++++.++++++|.++.+|..||.+|-++|+.+.+..+.-.|--++|.+.+.|..+|.....+|.++.|.-+|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 206 DILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 206 kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
++++.+|.+...+++...+|.+.++.
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~ 257 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDL 257 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChH
Confidence 99999999999999999999888774
No 83
>PRK15331 chaperone protein SicA; Provisional
Probab=98.89 E-value=4.1e-08 Score=79.13 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=88.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
+.-.....+++++|+..|+-....||.|.+.|..||.++...|+|++|+..|..+..++++++...+..|.||..+|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 44455667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCH
Q 026642 199 TAKRLFKDILKERPLLL 215 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~ 215 (235)
+|+..|+.+++ .|.+.
T Consensus 123 ~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 123 KARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHh-CcchH
Confidence 99999999988 56653
No 84
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.86 E-value=7.6e-08 Score=88.16 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=102.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642 117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK 196 (235)
Q Consensus 117 ~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~ 196 (235)
..+..-....+.+++|++.+++..+.+| ++...++++++..++..+|++.++++++.+|.+.+.+...|..+...|+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3444455556678999999999999876 4677799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
++.|++..+++++..|++...|+.|+.+|.+.+|.+.
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ 286 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFEN 286 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999998654
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.84 E-value=6.5e-08 Score=96.09 Aligned_cols=107 Identities=11% Similarity=0.130 Sum_probs=91.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
.....+++++|++.|+++++.+|++++++..++.+|.+.|+.++|++.+++++..+|++..+ ..++.++..++++.+|+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL 189 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHH
Confidence 44456778999999999999999999999999999999999999999999999999986555 66677777788887799
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642 202 RLFKDILKERPLLLRALHDLGRYVSMTL 229 (235)
Q Consensus 202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~~ 229 (235)
+.|+++++.+|++..++.++...+.+.+
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999888887776654
No 86
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.84 E-value=7.8e-08 Score=75.92 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=88.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLST 199 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~ 199 (235)
..+..++.+.+++.++.+|+. ..++..+|.+++..|++++|+..|+++++..|+. ..+++.+|.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455777888899999999998 5678888999999999999999999999987665 4578889999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 200 AKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 200 A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
|+..++.+ ...+....++.-+|.+|.+.++..+
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHH
Confidence 99999763 3444447788889999998887654
No 87
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.82 E-value=5.4e-08 Score=79.36 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR----------NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK-- 196 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~----------~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~-- 196 (235)
++.|.+.++.....||.|++++..-|..+..+.+ +++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999998877533 5678889999999999999999999999988876
Q ss_pred ---------HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642 197 ---------LSTAKRLFKDILKERPLLLRALHDLGRY 224 (235)
Q Consensus 197 ---------~~~A~~~l~kaL~~~P~~~~a~~~l~~~ 224 (235)
|++|.++|+++...+|++......|.+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7899999999999999998777666655
No 88
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.80 E-value=2e-08 Score=68.84 Aligned_cols=56 Identities=29% Similarity=0.346 Sum_probs=52.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 026642 123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG-RNKEALEFVKRLIDIEP 178 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g-~~~eAi~~l~kai~l~P 178 (235)
....+++++|+..|+++++.+|+++.+|..+|.++...| ++++|+++++++++++|
T Consensus 13 ~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 13 YFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344556999999999999999999999999999999999 79999999999999998
No 89
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.80 E-value=4.4e-08 Score=67.79 Aligned_cols=66 Identities=26% Similarity=0.365 Sum_probs=61.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~ 190 (235)
..+++++|++.++++++.+|+++.+|..+|.++.+.|++++|++.++++++.+|+++.+...++.+
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 456699999999999999999999999999999999999999999999999999999888777653
No 90
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=3.5e-08 Score=90.37 Aligned_cols=110 Identities=21% Similarity=0.135 Sum_probs=104.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
++++++|.+.|+++|..|..+.++++++|..+-.+|+.++|+++|-++-.+=-++++.++.+|.+|..+.+...|+++|-
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999888777899999999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhchhhcccC
Q 026642 206 DILKERPLLLRALHDLGRYVSMTLQIQSLF 235 (235)
Q Consensus 206 kaL~~~P~~~~a~~~l~~~~~~~~~~~~~f 235 (235)
++..+-|+++.++..|+.+|.+-+|....|
T Consensus 583 q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 583 QANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 999999999999999999999999987665
No 91
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.2e-07 Score=81.13 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=84.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG---RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g---~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
.....++.+.|...|.+++++.|+|++.+..+|.++..+. ...+|...+++++++||+++.+.+.+|..+...|+|.
T Consensus 165 ~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~ 244 (287)
T COG4235 165 AYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYA 244 (287)
T ss_pred HHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHH
Confidence 3334555688999999999999999999999999887654 3678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCC
Q 026642 199 TAKRLFKDILKERPLL 214 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~ 214 (235)
+|+..++..+...|.+
T Consensus 245 ~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 245 EAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999999999887
No 92
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.78 E-value=2.7e-07 Score=72.80 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=85.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHH
Q 026642 120 KEKRDALMGKSEVEEMFEKLLEKEPR---NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV---EWKLLQALCYEL 193 (235)
Q Consensus 120 ~e~~~~~~~~~eA~~~~e~aL~~~P~---~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~---~a~~~lA~~~~~ 193 (235)
.++..+.+++++|++.|+.+....|. ...+...++++|++.|++++|+..+++-|+++|+++ .+++.+|.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455567899999999999998765 457899999999999999999999999999999874 688899999999
Q ss_pred cCC---------------HHHHHHHHHHHHHHCCCCHHH
Q 026642 194 MGK---------------LSTAKRLFKDILKERPLLLRA 217 (235)
Q Consensus 194 ~g~---------------~~~A~~~l~kaL~~~P~~~~a 217 (235)
+.+ ..+|...|++++...|++..+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 987 889999999999999998544
No 93
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.77 E-value=1.1e-07 Score=82.83 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=76.7
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHH
Q 026642 147 VEALKVVMQGN-MRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALH 219 (235)
Q Consensus 147 ~~a~~~la~~~-~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~ 219 (235)
...++..+..+ ++.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++.+|++ ..+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46677777765 67899999999999999999998 5799999999999999999999999999999987 88999
Q ss_pred HHHHHHhhchhhc
Q 026642 220 DLGRYVSMTLQIQ 232 (235)
Q Consensus 220 ~l~~~~~~~~~~~ 232 (235)
.+|.++...++..
T Consensus 222 klg~~~~~~g~~~ 234 (263)
T PRK10803 222 KVGVIMQDKGDTA 234 (263)
T ss_pred HHHHHHHHcCCHH
Confidence 9999998777644
No 94
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.77 E-value=1.1e-07 Score=87.42 Aligned_cols=118 Identities=11% Similarity=-0.029 Sum_probs=97.5
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHH
Q 026642 115 ASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEAL--KVVMQGNMRRGRNKEALEFVKRLIDIEPNEV--EWKLLQALC 190 (235)
Q Consensus 115 ~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~--~~la~~~~~~g~~~eAi~~l~kai~l~P~~~--~a~~~lA~~ 190 (235)
....+.......++.++|++.++++++.+|++.... ..........++.+.+++.++++++.+|+++ .....+|.+
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 334455667777889999999999999999998643 3344444556889999999999999999999 888899999
Q ss_pred HHHcCCHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 191 YELMGKLSTAKRLFK--DILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 191 ~~~~g~~~~A~~~l~--kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
++.+|++++|.++|+ ++++.+|++.. +..++.++.+.++.++
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAE 388 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence 999999999999999 68889998866 4488999888877543
No 95
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.5e-07 Score=78.27 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=87.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVE-----ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~-----a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
.+++++|...|..+|+.=|.... .+.+.|.+++++++++.||+...++|+++|.+..+...+|.+|..+.+|++|
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eea 187 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEA 187 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHH
Confidence 56789999999999998776543 4566788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
Q 026642 201 KRLFKDILKERPLLLRALHDLGRY 224 (235)
Q Consensus 201 ~~~l~kaL~~~P~~~~a~~~l~~~ 224 (235)
+..|.++++.+|..-.+..+...+
T Consensus 188 leDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 188 LEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999986666555443
No 96
>PRK15331 chaperone protein SicA; Provisional
Probab=98.75 E-value=3.3e-08 Score=79.69 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=85.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 026642 141 EKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHD 220 (235)
Q Consensus 141 ~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~ 220 (235)
...++..+..+..|.-++.+|++++|...|+-+...||.+.++|..+|.|+..+|+|++|++.|..+..+++++++..+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhc
Q 026642 221 LGRYVSMTLQIQ 232 (235)
Q Consensus 221 l~~~~~~~~~~~ 232 (235)
.|.+|...++..
T Consensus 111 agqC~l~l~~~~ 122 (165)
T PRK15331 111 TGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHhCCHH
Confidence 999998887754
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=1e-07 Score=84.98 Aligned_cols=91 Identities=20% Similarity=0.160 Sum_probs=73.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----EWKLLQALCYELMGKL 197 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----~a~~~lA~~~~~~g~~ 197 (235)
.....+++++|++.++++++.+|+++.++..+|.++...|++++|+.+++++++..|.++ ..+..+|.++...|++
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 344556688888888888888888888888888888888888888888888888876432 3456788888888888
Q ss_pred HHHHHHHHHHHHHCC
Q 026642 198 STAKRLFKDILKERP 212 (235)
Q Consensus 198 ~~A~~~l~kaL~~~P 212 (235)
++|...|++++...|
T Consensus 203 ~~A~~~~~~~~~~~~ 217 (355)
T cd05804 203 EAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHhcccc
Confidence 888888888877666
No 98
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=1.4e-07 Score=74.44 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 026642 118 NLKEKRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM 194 (235)
Q Consensus 118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~ 194 (235)
.+.......+++++|+..|+++++..|++ ..++..++.+++..|++++|+..++. +.-.+..+.++..+|.+|...
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC
Confidence 34455566778999999999999987655 35888899999999999999999977 344455678888999999999
Q ss_pred CCHHHHHHHHHHHH
Q 026642 195 GKLSTAKRLFKDIL 208 (235)
Q Consensus 195 g~~~~A~~~l~kaL 208 (235)
|++++|+..|+++|
T Consensus 132 g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 132 GDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999999875
No 99
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.74 E-value=2.7e-07 Score=79.69 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=89.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLS 198 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~ 198 (235)
..+++.+|++.|...++..|++ ++|++.||.+++.+|+|++|...|..+++-.|+. +++++.+|++...+|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3556899999999999999885 5899999999999999999999999999998875 688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642 199 TAKRLFKDILKERPLLLRALHDLGRY 224 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~~~ 224 (235)
+|...|+++++.+|+...+......+
T Consensus 233 ~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 233 EACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999999997766554433
No 100
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1.8e-07 Score=82.40 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026642 118 NLKEKRDALMGKSEVEEMFEKLLEKEPRN-----VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE 192 (235)
Q Consensus 118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~-----~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~ 192 (235)
.+..-.....+|++|++..++..+..+.+ +..+-.|+..+....+.+.|...+.++++.||+++++-+.+|.++.
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 34444445566899999998888876653 2356677778888899999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHhhchhhcc
Q 026642 193 LMGKLSTAKRLFKDILKERPLL-LRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 193 ~~g~~~~A~~~l~kaL~~~P~~-~~a~~~l~~~~~~~~~~~~ 233 (235)
..|+|++|++.++.+++.||+. ..++-.|..+|++.++.++
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999 6788888888888877543
No 101
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.72 E-value=1.1e-07 Score=90.17 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR--------GRNKEALEFVKRLIDI--EPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~--------g~~~eAi~~l~kai~l--~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
.++|+++|+++++.||+++.+|..++.+|... ++.+++.+..++++.+ +|.++.++..+|.++...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 46899999999999999999999888877553 1234555555665553 5666677777777777777777
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
+|...+++++.++| +..+|..+|.++...++.+
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH
Confidence 77777777777777 3667777777666666543
No 102
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.71 E-value=3.7e-07 Score=84.05 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=98.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-EWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
++++++|++.+.++.+..|+....+...|.++.++|++++|.++++++.+..|++. .+....+.++...|++++|.+.+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56789999999999999999888899999999999999999999999999999885 57777899999999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 205 KDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
+++++.+|++..++.-++.++.+.++-+
T Consensus 177 ~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 177 DKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999998888754
No 103
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.70 E-value=2e-08 Score=71.86 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=64.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 159 RRGRNKEALEFVKRLIDIEPN--EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 159 ~~g~~~eAi~~l~kai~l~P~--~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
++|+|++|+..++++++.+|. +..+++.+|.||+.+|+|++|+..+++ ++.++.+...++.+|.++.+.++.++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 478999999999999999995 466788899999999999999999999 88999998888888999988877543
No 104
>PRK11906 transcriptional regulator; Provisional
Probab=98.70 E-value=1.7e-07 Score=86.43 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=64.4
Q ss_pred HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642 130 SEVEEMFEKLL---EKEPRNVEALKVVMQGNMRR---------GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL 197 (235)
Q Consensus 130 ~eA~~~~e~aL---~~~P~~~~a~~~la~~~~~~---------g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~ 197 (235)
+.|..+|.+++ +.||+.+.++..++.+++.. .+-.+|.+..++++++||+|+.++..+|.++...|++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 45666666666 66666666666666666542 2234566666666666766666666666666666666
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 198 STAKRLFKDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
+.|...|++++.++|+.+.+|+..|.+..-.++
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 666666777766777666666666655444443
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=1.6e-07 Score=93.27 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=100.1
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------------
Q 026642 114 RASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV------------ 181 (235)
Q Consensus 114 ~~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~------------ 181 (235)
.+...+.......+++++|++..+.+++.+|+.+.+|+.+|.++.+.+++++|... +++...+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 44455666666778899999999999999999999999999999999888877666 6666555555
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 182 -------EWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 182 -------~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
.+++.+|.||..+|++++|.+.|+++|+.+|+|+.++.++|..|... +.
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence 99999999999999999999999999999999999999999998877 53
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=1.3e-07 Score=90.72 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALE--FVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~--~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
..++|.+.|..++..||+++.....+|.++.+.|+-.-|.+ .+..++++||.+.+||+.+|.++...|+.++|.++|+
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 46778888888888888888888888888888887666666 7888888888888888888888888888888888888
Q ss_pred HHHHHCCCC
Q 026642 206 DILKERPLL 214 (235)
Q Consensus 206 kaL~~~P~~ 214 (235)
.++++++.+
T Consensus 779 aa~qLe~S~ 787 (799)
T KOG4162|consen 779 AALQLEESN 787 (799)
T ss_pred HHHhhccCC
Confidence 888877766
No 107
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.68 E-value=2.7e-08 Score=69.92 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE---P-N---EVEWKLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~---P-~---~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
+-+.++..+|.+|..+|+|++|+++|++++++. + + -+..+.++|.++..+|++++|++.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999752 2 2 2567889999999999999999999999875
No 108
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.68 E-value=3.4e-07 Score=84.06 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=91.4
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642 114 RASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL 193 (235)
Q Consensus 114 ~~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~ 193 (235)
.....+.......++.++|.+.++++++. +.+.+....++.+ ..++.+++++.+++.++.+|+++..++.+|.++..
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~ 340 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK 340 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 34455666777778889999999999994 4455555444444 55899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 194 MGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 194 ~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
.|++++|.+.|+++++.+|++.. +..++.++.+.++.+
T Consensus 341 ~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~ 378 (398)
T PRK10747 341 HGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPE 378 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHH
Confidence 99999999999999999998644 456777777766644
No 109
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=8.4e-08 Score=84.83 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
...+.|...|.+.++.-|.|+..+...++++...+++++|+++|+.+++++|.++++....|.-|++.|+.|-|..+|++
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHhhchh
Q 026642 207 ILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
+|++--.+++.+.++|+++.-..+
T Consensus 350 iLqmG~~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 350 ILQMGAQSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHhcCCChHHHhhHHHHHHhhcc
Confidence 999999999999999998665443
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=2.3e-07 Score=82.74 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 131 eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
.+.+.++.....+|....++..+|.++..+|++++|+..++++++++|+++.++..+|.+|+..|++++|+..+++++..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 98 HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 33333333334455566666677788899999999999999999999999999999999999999999999999999998
Q ss_pred CCCC----HHHHHHHHHHHhhchhhcc
Q 026642 211 RPLL----LRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 211 ~P~~----~~a~~~l~~~~~~~~~~~~ 233 (235)
.|.+ ...+..++.++...++.++
T Consensus 178 ~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 178 WDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred cCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 8744 3456678888888887654
No 111
>PRK11906 transcriptional regulator; Provisional
Probab=98.67 E-value=2.8e-07 Score=84.91 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+..+|.+..+++++.||+|+.++..+|.+....|+++.|+..+++++.++|+.+.+|+..|.+....|+.++|.+.++++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCC
Q 026642 208 LKERPLL 214 (235)
Q Consensus 208 L~~~P~~ 214 (235)
++++|.-
T Consensus 399 lrLsP~~ 405 (458)
T PRK11906 399 LQLEPRR 405 (458)
T ss_pred hccCchh
Confidence 9999988
No 112
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=4e-07 Score=80.30 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=88.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A 200 (235)
......+.++|+..+.++++.||+++.+-..+|++++..|+|+.|++.++++++.||++ ++....+..||...|+.++.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33344556889999999999999999999999999999999999999999999999998 56788899999999999999
Q ss_pred HHHHHHHHHHCCCC--HHHHHHHHH
Q 026642 201 KRLFKDILKERPLL--LRALHDLGR 223 (235)
Q Consensus 201 ~~~l~kaL~~~P~~--~~a~~~l~~ 223 (235)
...+.++.+..++. ..++..+..
T Consensus 269 ~~fL~~~~~~~~g~~~~l~l~~lie 293 (389)
T COG2956 269 LNFLRRAMETNTGADAELMLADLIE 293 (389)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHH
Confidence 99999999988876 334444433
No 113
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.65 E-value=7.9e-08 Score=85.48 Aligned_cols=98 Identities=15% Similarity=0.068 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
+.|++|+.+|.+.+..+|.|+..+.+.+..|++.++|..|....+.++.+|-.+..+|..+|.+-..+|...+|.+.++.
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~ 190 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET 190 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHH
Q 026642 207 ILKERPLLLRALHDLGRY 224 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~ 224 (235)
+|+++|++.+.--.++.+
T Consensus 191 vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 191 VLALEPKNIELKKSLARI 208 (536)
T ss_pred HHhhCcccHHHHHHHHHh
Confidence 999999986655444433
No 114
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.2e-07 Score=85.65 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 128 GKSEVEEMFEKLLEK----EPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~----~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
++.+|..+|+.+++. .+.. ...+.+||.+|-+++++++||.+|++++.+.|.++.++...|.+|..+|+++.|
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH
Confidence 478999999999842 2222 235899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCC--HHHHHHHHHH
Q 026642 201 KRLFKDILKERPLL--LRALHDLGRY 224 (235)
Q Consensus 201 ~~~l~kaL~~~P~~--~~a~~~l~~~ 224 (235)
++.|.++|.++|++ +..+.++++.
T Consensus 509 id~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 509 IDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99999999999999 4555555444
No 115
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.63 E-value=3.8e-07 Score=86.53 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLE--KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 130 ~eA~~~~e~aL~--~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
.++.+..++++. .+|.++.++..+|..+...|++++|...++++++++| +..+|..+|.++...|++++|++.|+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555556555 3888899999999999999999999999999999999 4889999999999999999999999999
Q ss_pred HHHCCCCHH
Q 026642 208 LKERPLLLR 216 (235)
Q Consensus 208 L~~~P~~~~ 216 (235)
+.++|.+..
T Consensus 480 ~~L~P~~pt 488 (517)
T PRK10153 480 FNLRPGENT 488 (517)
T ss_pred HhcCCCCch
Confidence 999999853
No 116
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.7e-07 Score=87.50 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=95.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC---CHHHHHHHHHHHHHcCCHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI----EPN---EVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l----~P~---~~~a~~~lA~~~~~~g~~~ 198 (235)
..+..-|.+.|.+++.+.|+|+-.+..+|.+.+..+.|.+|+.+++++++. .++ ....+.++|.+|.+.++++
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 345688999999999999999999999999999999999999999999942 222 3345889999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
+|+..|+++|.+.|++..+|-.+|.+|+..+..+
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 9999999999999999999999999998877643
No 117
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.62 E-value=3.8e-07 Score=89.52 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 026642 118 NLKEKRDALMGKSEVEEMFEKLLEKEP---RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYEL 193 (235)
Q Consensus 118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P---~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~ 193 (235)
.+..-....+++..+...++.++...- --.+.++.+|+.|..+|+|++|..+|.++++.++++ .-.++.+|++|+.
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 344444445557777777766666542 233457777777777777777777777777777776 6666677777777
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 194 MGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 194 ~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
.|+++.|+.+|+++++..|++..++.-+|.+|...
T Consensus 355 ~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 77777777777777777777777777777776655
No 118
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.61 E-value=6.4e-07 Score=69.02 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=77.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcC
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN---EVEWKLLQALCYELMG 195 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~---~~~a~~~lA~~~~~~g 195 (235)
..+..++.++|+..|+++++..... .+++..+|..+...|++++|+..+++++...|+ +......+|.++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 3445567899999999999975444 568999999999999999999999999999888 7788888999999999
Q ss_pred CHHHHHHHHHHHHHHC
Q 026642 196 KLSTAKRLFKDILKER 211 (235)
Q Consensus 196 ~~~~A~~~l~kaL~~~ 211 (235)
++++|+..+-.++...
T Consensus 90 r~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 90 RPKEALEWLLEALAET 105 (120)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998887633
No 119
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.61 E-value=3.5e-07 Score=87.91 Aligned_cols=105 Identities=18% Similarity=0.123 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR--LFKD 206 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~--~l~k 206 (235)
.++|.-++.++-..+|-.+..|+..|..+...|+++||.+.|..++.+||+++.....+|.++...|+..-|.+ .+..
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 46677788888899999999999999999999999999999999999999999999999999999999888888 9999
Q ss_pred HHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 207 ILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
++++||.+..+|+++|.++.+.||.+.
T Consensus 746 alr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 746 ALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 999999999999999999999998653
No 120
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.59 E-value=2.2e-06 Score=66.06 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHH
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPL---LLRALHDL 221 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~---~~~a~~~l 221 (235)
++++.+|.++-..|+.++|+..|+++++...+. .++++.+|..|..+|++++|+..+++.+...|+ +..+..-+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999976554 578999999999999999999999999999998 55555556
Q ss_pred HHHHhhchhh
Q 026642 222 GRYVSMTLQI 231 (235)
Q Consensus 222 ~~~~~~~~~~ 231 (235)
++++...+..
T Consensus 82 Al~L~~~gr~ 91 (120)
T PF12688_consen 82 ALALYNLGRP 91 (120)
T ss_pred HHHHHHCCCH
Confidence 6665554443
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.59 E-value=8.8e-07 Score=74.03 Aligned_cols=85 Identities=26% Similarity=0.290 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHH
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRAL 218 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~ 218 (235)
.+++.++..|..+++.|+|++|++.|++++...|+. +.+.+.+|.+++..|++++|+..+++.++..|++ ..++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 457889999999999999999999999999998875 5789999999999999999999999999999998 6788
Q ss_pred HHHHHHHhhch
Q 026642 219 HDLGRYVSMTL 229 (235)
Q Consensus 219 ~~l~~~~~~~~ 229 (235)
+.+|+++.+..
T Consensus 83 Y~~g~~~~~~~ 93 (203)
T PF13525_consen 83 YMLGLSYYKQI 93 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99998876654
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=1.8e-06 Score=79.58 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=81.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.+...+|++.+++++..+|+..-.+..+|++|++.|++++|+..+++.+..+|+++.+|..+|++|..+|+..+|...+.
T Consensus 353 ~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 353 ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999888888887
Q ss_pred HHHHHCCCC
Q 026642 206 DILKERPLL 214 (235)
Q Consensus 206 kaL~~~P~~ 214 (235)
+.+.+.-+.
T Consensus 433 E~~~~~G~~ 441 (484)
T COG4783 433 EGYALAGRL 441 (484)
T ss_pred HHHHhCCCH
Confidence 777766554
No 123
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.58 E-value=1.3e-07 Score=59.62 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQAL 189 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~ 189 (235)
++|..+|..|.+.|++++|++.|+++++.+|+++++|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666666666666666666666666666666654
No 124
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.57 E-value=3.6e-07 Score=89.65 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
++.|.+.|.-+++..|+|+-++.+.|.+.+..|+|-.|+.+|++++..+|.. ++..+..|.|+..+|+.+.|+..|+++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999986 688899999999999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHhhchhh
Q 026642 208 LKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
+++||+++.++.+||.+-....+.
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~ 249 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDS 249 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccch
Confidence 999999999999999886655543
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.57 E-value=1e-06 Score=75.90 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHH
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWK---LLQALCYELMGKLSTAKRLFKDILKERPLL---LRAL 218 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~---~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~ 218 (235)
.+++.++..|..+++.|+|++|++.|++++...|+.+.+. +.+|.+|+..|++++|+..+++.++.+|++ ..++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4567788889999999999999999999999999986554 889999999999999999999999999999 6788
Q ss_pred HHHHHHHhhc
Q 026642 219 HDLGRYVSMT 228 (235)
Q Consensus 219 ~~l~~~~~~~ 228 (235)
+.+|+++...
T Consensus 110 Y~~g~~~~~~ 119 (243)
T PRK10866 110 YMRGLTNMAL 119 (243)
T ss_pred HHHHHhhhhc
Confidence 8888875333
No 126
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.56 E-value=1.5e-06 Score=68.60 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHH
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRAL 218 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~ 218 (235)
..+..++.-|...++.|+|++|++.++.+....|.. ..+.+.+|.+|+..|+|++|+..+++.++++|++ ..++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 356788889999999999999999999999998875 5789999999999999999999999999999999 6788
Q ss_pred HHHHHHHhhchh
Q 026642 219 HDLGRYVSMTLQ 230 (235)
Q Consensus 219 ~~l~~~~~~~~~ 230 (235)
+..|+.+.+..+
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 888888776544
No 127
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=3.4e-07 Score=76.97 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
.-|.-.|.++|.++|+-+++.+.||.-+...|+|+.|.+.++.++++||.+..+..++|..+++-|+|.-|.+.+.+..+
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCH
Q 026642 210 ERPLLL 215 (235)
Q Consensus 210 ~~P~~~ 215 (235)
.||+++
T Consensus 162 ~D~~DP 167 (297)
T COG4785 162 DDPNDP 167 (297)
T ss_pred cCCCCh
Confidence 999994
No 128
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.54 E-value=1.9e-06 Score=79.16 Aligned_cols=106 Identities=11% Similarity=0.047 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVV-MQGNMRRGRNKEALEFVKRLIDIEPNEVEWK-LLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~l-a~~~~~~g~~~eAi~~l~kai~l~P~~~~a~-~~lA~~~~~~g~~~~A~~~ 203 (235)
++++++|++.+.+..+..+ ++..++.+ +....+.|++++|.++++++.+.+|++..+. ...+.++...|++++|.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4677888876666544432 34444444 5555889999999999999999888875444 3458899999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 204 FKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
++++++.+|++..++..++.+|.+.++-+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 99999999999999988888888877643
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.53 E-value=1.4e-06 Score=79.93 Aligned_cols=83 Identities=20% Similarity=0.335 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.++..+|++.++++++.+|.+.+.+...+..+++.|+++.|++..++++++.|++-+.|+.||.+|..+|++++|+..++
T Consensus 213 ~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 213 MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHH
Q 026642 206 DIL 208 (235)
Q Consensus 206 kaL 208 (235)
.+-
T Consensus 293 s~P 295 (395)
T PF09295_consen 293 SCP 295 (395)
T ss_pred cCc
Confidence 553
No 130
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.53 E-value=1.4e-06 Score=67.90 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=81.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----EWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----~a~~~lA~~~~~~g~~~~A 200 (235)
+.++.++|++.|.+++..-|..+.+|.+.++.+--+|+-++|++.+++++++..+.. .++..+|.+|...|+.++|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 345689999999999999999999999999999999999999999999999986653 5688899999999999999
Q ss_pred HHHHHHHHHHCCCC
Q 026642 201 KRLFKDILKERPLL 214 (235)
Q Consensus 201 ~~~l~kaL~~~P~~ 214 (235)
...|+.+-++-..+
T Consensus 135 R~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 135 RADFEAAAQLGSKF 148 (175)
T ss_pred HHhHHHHHHhCCHH
Confidence 99999987776554
No 131
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=2.7e-07 Score=81.68 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------------------
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE------------------------------ 177 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~------------------------------ 177 (235)
++++|.+.|+.+++.+|.|+|+...+|-.|+-.++.|-|+.+|.+++...
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 36778888888888888877776666655555555555555555555442
Q ss_pred ------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 178 ------PNE-VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 178 ------P~~-~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
|+. .+.|+++|.+....||+..|..+|+-+|..|+++.+++.+|+.+-++.++-.
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence 222 5778888888888888888888888888888888888888888888877643
No 132
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.49 E-value=9.5e-07 Score=83.70 Aligned_cols=109 Identities=14% Similarity=0.059 Sum_probs=98.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642 123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR 202 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~ 202 (235)
.+.-++.++|......++..|+.+.-.|..+|.++-..++|++||+||..|++++|+|.+.|..++.+..++|+++....
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 34445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 203 LFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
.-.+.+++.|.+-..|.++++.++-.++.
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888776654
No 133
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=3e-07 Score=88.02 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
.+++++.+.++..++++|-..+.|+.+|.+..+.++++.|.++|.+.+.++|++.++|++++.+|..+|+-.+|...+.+
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 34677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 207 ILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
+++.+-++...|.|.-.+..+.+..
T Consensus 579 AlKcn~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 579 ALKCNYQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred HhhcCCCCCeeeechhhhhhhcccH
Confidence 8888866677776666665555443
No 134
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.6e-07 Score=82.09 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNV----EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR 202 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~----~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~ 202 (235)
+.+.+|.+.|.++|..||++. ..|.+++.++.+.|+.++|+...+.++++|+.+..++..+|.|+..+++|++|++
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666543 3455556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHCCC
Q 026642 203 LFKDILKERPL 213 (235)
Q Consensus 203 ~l~kaL~~~P~ 213 (235)
+|+++++.+-+
T Consensus 343 d~~~a~q~~~s 353 (486)
T KOG0550|consen 343 DYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhhccc
Confidence 66666665544
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=9.1e-07 Score=80.21 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=82.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Q 026642 142 KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE----VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRA 217 (235)
Q Consensus 142 ~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~----~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a 217 (235)
..|+-.+.|..-|.-.++.|+|..|.++|..+|.+||++ +..|.++|.+...+|+.++|+...+.++++|+..+.+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 345677899999999999999999999999999999986 4568889999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhc
Q 026642 218 LHDLGRYVSMTLQIQ 232 (235)
Q Consensus 218 ~~~l~~~~~~~~~~~ 232 (235)
+...|.++.-.++-+
T Consensus 324 ll~ra~c~l~le~~e 338 (486)
T KOG0550|consen 324 LLRRANCHLALEKWE 338 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987766543
No 136
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.47 E-value=6.1e-06 Score=68.96 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=76.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHc
Q 026642 121 EKRDALMGKSEVEEMFEKLLEKEPR---NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELM 194 (235)
Q Consensus 121 e~~~~~~~~~eA~~~~e~aL~~~P~---~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~ 194 (235)
......+++++|++.|++++...|+ -.+++..+|.++.+.|++++|+..+++.++..|++ +.+++.+|.+++.+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3444567799999999999998776 45789999999999999999999999999999986 46888999987765
Q ss_pred CC-----------HHHHHHHHHHHHHHCCCC
Q 026642 195 GK-----------LSTAKRLFKDILKERPLL 214 (235)
Q Consensus 195 g~-----------~~~A~~~l~kaL~~~P~~ 214 (235)
.+ ..+|+..|+.++...|+.
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred CccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 43 358999999999999999
No 137
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.47 E-value=2.9e-07 Score=81.95 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRY 224 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~ 224 (235)
+...|..|+++|+|+|||+||.+.+..+|.++.++.++|.+|....+|..|...++.++.+|-.++.+|...+..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999998887777555443
No 138
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.46 E-value=5.6e-06 Score=80.93 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=85.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
+-..+.++.+++...+-.|...+|+|.+.|..++....++|++++|.-||.+||..+|.+.+..+.++.+|..+|++..|
T Consensus 181 ~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 181 EIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHH
Confidence 33333445899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCC
Q 026642 201 KRLFKDILKERP 212 (235)
Q Consensus 201 ~~~l~kaL~~~P 212 (235)
++.|.+++.+.|
T Consensus 261 m~~f~~l~~~~p 272 (895)
T KOG2076|consen 261 METFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHhhCC
Confidence 999999999999
No 139
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.46 E-value=2.1e-07 Score=85.56 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
..++.|+..|.++++++|+++..+...+..+++.+++.+|+....++|+++|....+|+.+|.+....+++.+|...|++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHH
Q 026642 207 ILKERPLLLRALHDLGRY 224 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~ 224 (235)
...+.|++..+...+.-+
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDEC 115 (476)
T ss_pred hhhcCcCcHHHHHHHHHH
Confidence 999999998887766555
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=1.8e-06 Score=85.97 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=92.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------CCCCHH
Q 026642 123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI--------------------EPNEVE 182 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l--------------------~P~~~~ 182 (235)
....+..++|...|+++|+.||+|+.++..+|+.|... +.++|++++.+|++. +|++.+
T Consensus 126 Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 126 YAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccch
Confidence 33446789999999999999999999999999999998 999998888777764 455443
Q ss_pred HHH--------HHH------------HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhccc
Q 026642 183 WKL--------LQA------------LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSL 234 (235)
Q Consensus 183 a~~--------~lA------------~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~~ 234 (235)
... .++ ..|..+++|++++..++.+|+.+|+|..+.++++.+|.+++.....
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~ 276 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSL 276 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcch
Confidence 311 123 6788889999999999999999999999999999999988876543
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.46 E-value=6.5e-07 Score=88.16 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
..+|+..|+.+++.+|+|.+.|..+|.+|...|+|.-|++.++|+..++|.+-...+-.|.+...+|+|.+|.+.+..++
T Consensus 578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHhhc
Q 026642 209 KERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 209 ~~~P~~~~a~~~l~~~~~~~ 228 (235)
....+...+..+++.++.+-
T Consensus 658 ~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 658 YAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHHHHHhhhhHHHHHHHH
Confidence 98888888888888776653
No 142
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.45 E-value=5.1e-07 Score=56.92 Aligned_cols=43 Identities=26% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642 181 VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223 (235)
Q Consensus 181 ~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~ 223 (235)
+.++..+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999999999999999999999875
No 143
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=1.8e-06 Score=74.61 Aligned_cols=85 Identities=19% Similarity=0.140 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHDLGR 223 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~l~~ 223 (235)
.+..+.-+++.|+|.+|+..|..-++..|+. +.+++.||++++.+|+|++|...|..+.+.+|++ +++++.+|+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999986 6899999999999999999999999999999999 799999999
Q ss_pred HHhhchhhccc
Q 026642 224 YVSMTLQIQSL 234 (235)
Q Consensus 224 ~~~~~~~~~~~ 234 (235)
++.+.++.+++
T Consensus 224 ~~~~l~~~d~A 234 (262)
T COG1729 224 SLGRLGNTDEA 234 (262)
T ss_pred HHHHhcCHHHH
Confidence 99998887654
No 144
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.42 E-value=1.1e-06 Score=83.20 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+|.+.....+++|+..|+..+.+...|..+.-.|+-++|.++...+++.|+....-|..+|.++....+|++|+++|+.|
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 208 LKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
+..+|+|...|+.++++..+-++.+.
T Consensus 102 l~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 102 LKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999877766543
No 145
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.41 E-value=3.9e-07 Score=81.10 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642 144 PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223 (235)
Q Consensus 144 P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~ 223 (235)
|.+++-...+|..++..|++.+|+..|..+++.||++..+++.+|.+|..+|+-..|+..+.++|++.|+...+....|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhchhhc
Q 026642 224 YVSMTLQIQ 232 (235)
Q Consensus 224 ~~~~~~~~~ 232 (235)
++.+.++.+
T Consensus 115 vllK~Gele 123 (504)
T KOG0624|consen 115 VLLKQGELE 123 (504)
T ss_pred hhhhcccHH
Confidence 888877654
No 146
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=6.3e-07 Score=85.85 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=86.9
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642 134 EMFEKLLEK-EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP 212 (235)
Q Consensus 134 ~~~e~aL~~-~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P 212 (235)
..|+++++. +-.++.|...+|.....+++|+++.++++..++++|-....|+.+|.+....+++..|.++|.+++.++|
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 345555554 2234455566666666689999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhchhhcccC
Q 026642 213 LLLRALHDLGRYVSMTLQIQSLF 235 (235)
Q Consensus 213 ~~~~a~~~l~~~~~~~~~~~~~f 235 (235)
++..+|.++...|.+.++..+.|
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHH
Confidence 99999999999999998877654
No 147
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.39 E-value=3.4e-07 Score=54.75 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=22.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642 170 VKRLIDIEPNEVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 170 l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56667777777777777777777777776664
No 148
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.9e-06 Score=75.67 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
.++|...+++.|+++|....|-..++.+....|++++++..+++.+...|+ ...+..+|.++...+++.+|+++|.++|
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 388999999999999999999999999999999999999999999999887 5678899999999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHH
Q 026642 209 KERPLLLRALHDLGRYV 225 (235)
Q Consensus 209 ~~~P~~~~a~~~l~~~~ 225 (235)
.+||++..++.|+-.+-
T Consensus 499 r~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 499 RQDPKSKRTLRGLRLLE 515 (564)
T ss_pred hcCccchHHHHHHHHHH
Confidence 99999999998887654
No 149
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.34 E-value=2.7e-06 Score=75.17 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=90.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG--RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK 196 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g--~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~ 196 (235)
..+-....++.+.|.+.++..-+.+.+++-.....+++.+..| ++.+|...|+++.+..+..+..++.+|.++..+|+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 3344455666899999999988888776666666677777766 59999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
|++|.+.++++++.+|++..++.+++.+....++.
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999987766654
No 150
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.34 E-value=6e-06 Score=64.46 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL----LRALHDLGRYV 225 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~----~~a~~~l~~~~ 225 (235)
+..-|......|+.++|++.|.+++.+-|..+.+|+++|++|..+|+.++|.+.+++++++.-+. -.++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34457788899999999999999999999999999999999999999999999999999988665 56788899999
Q ss_pred hhchhhc
Q 026642 226 SMTLQIQ 232 (235)
Q Consensus 226 ~~~~~~~ 232 (235)
...++..
T Consensus 126 Rl~g~dd 132 (175)
T KOG4555|consen 126 RLLGNDD 132 (175)
T ss_pred HHhCchH
Confidence 8887654
No 151
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.34 E-value=4.1e-06 Score=79.79 Aligned_cols=104 Identities=17% Similarity=0.020 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
..++|++.++++|+..|+....|..+|+++.+.++.+.|-+.|..-++..|+.+..|..++.+-...|..-+|...++++
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHhhchhh
Q 026642 208 LKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
...+|++...|.....+-.+.+..
T Consensus 746 rlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 746 RLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HhcCCCcchhHHHHHHHHHHcCCH
Confidence 999999999999988887776653
No 152
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=8.2e-06 Score=74.28 Aligned_cols=109 Identities=21% Similarity=0.188 Sum_probs=94.8
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------------------------cCCHHHHHHH
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----------------------------------RGRNKEALEF 169 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----------------------------------~g~~~eAi~~ 169 (235)
...+++++|+-.|+++.-.||.+.++.-..|.++.+ .++++.|+.+
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 335567899999999999999998887777776655 4566778888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 170 VKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 170 l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
.+|+|+.+|++.++++.+|.++..+|+.++|+-.|+.+..+.|-..+.|.||.-.|...+...
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 999999999999999999999999999999999999999999999999999999987765543
No 153
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4e-06 Score=75.90 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST-AKRLFK 205 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~-A~~~l~ 205 (235)
.++.+|++..+++|+.+|+|..|++..|.+++..|+|+.|+..|+++++++|+|-.+...+..+.....++++ ..+.|.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999998888877765 488888
Q ss_pred HHHHHCC
Q 026642 206 DILKERP 212 (235)
Q Consensus 206 kaL~~~P 212 (235)
+++..-+
T Consensus 351 ~mF~k~~ 357 (397)
T KOG0543|consen 351 NMFAKLA 357 (397)
T ss_pred HHhhccc
Confidence 8887655
No 154
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.4e-06 Score=71.75 Aligned_cols=84 Identities=8% Similarity=0.065 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
.++.|+..|.+++..+|..+..|.+.+..|++.++|+.+.+...++++++|+.+.+.+.+|.++.....|++|+..+.++
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHC
Q 026642 208 LKER 211 (235)
Q Consensus 208 L~~~ 211 (235)
+.+.
T Consensus 105 ~sl~ 108 (284)
T KOG4642|consen 105 YSLL 108 (284)
T ss_pred HHHH
Confidence 6543
No 155
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.26 E-value=9.3e-05 Score=63.67 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=73.0
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC-
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNV---EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV---EWKLLQALCYELMGK- 196 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~---~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~---~a~~~lA~~~~~~g~- 196 (235)
.+.+++++|++.|+.+....|.++ .+...++..+.+.+++++|+...++-+++.|.++ .+++.+|.++...=+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 345689999999999999987655 6888899999999999999999999999998753 456667777654432
Q ss_pred -------HHHHHHHHHHHHHHCCCC
Q 026642 197 -------LSTAKRLFKDILKERPLL 214 (235)
Q Consensus 197 -------~~~A~~~l~kaL~~~P~~ 214 (235)
-.+|...|+.+++..|+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCC
Confidence 246777888888888876
No 156
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.22 E-value=3e-05 Score=64.09 Aligned_cols=106 Identities=16% Similarity=0.058 Sum_probs=90.8
Q ss_pred HHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHH
Q 026642 122 KRDALMGKSEVEEMFEKLLE-KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE--VEWKLLQALCYELMGKLS 198 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~-~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~--~~a~~~lA~~~~~~g~~~ 198 (235)
..-+.+++.||+..|++++. ..-+|+..+..+++..+..+++.+|...++++.+.+|.. ++....+|++|...|+++
T Consensus 98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 44445567889999999887 577899999999999999999999999999999999874 788999999999999999
Q ss_pred HHHHHHHHHHHHCCCC-HHHHHHHHHHHhh
Q 026642 199 TAKRLFKDILKERPLL-LRALHDLGRYVSM 227 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~-~~a~~~l~~~~~~ 227 (235)
+|...|+.++...|+. ...+++.-+.-+.
T Consensus 178 ~Aesafe~a~~~ypg~~ar~~Y~e~La~qg 207 (251)
T COG4700 178 DAESAFEVAISYYPGPQARIYYAEMLAKQG 207 (251)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998 5566555444443
No 157
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.20 E-value=2e-06 Score=51.31 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642 135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALE 168 (235)
Q Consensus 135 ~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~ 168 (235)
.|+++++.+|+|+++|..+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 158
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.17 E-value=1.5e-05 Score=73.69 Aligned_cols=59 Identities=19% Similarity=0.061 Sum_probs=52.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEA---LKVVMQGNMRRGRNKEALEFVKRLIDIE 177 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a---~~~la~~~~~~g~~~eAi~~l~kai~l~ 177 (235)
+.......+++++|+..|+++|+.+|++.++ |+++|.+|..+|++++|++++++++++.
T Consensus 81 LG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 81 LGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3344455667999999999999999999976 9999999999999999999999999983
No 159
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.17 E-value=1.3e-05 Score=70.85 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL-STAKRLFK 205 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~-~~A~~~l~ 205 (235)
+.+.+|.-.|++..+..+.++..+..++.+++.+|+|++|.+.++++++.+|++++...+++.+...+|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 34678899999988888899999999999999999999999999999999999999999999999999999 67778889
Q ss_pred HHHHHCCCCHHH
Q 026642 206 DILKERPLLLRA 217 (235)
Q Consensus 206 kaL~~~P~~~~a 217 (235)
++-..+|+++..
T Consensus 261 qL~~~~p~h~~~ 272 (290)
T PF04733_consen 261 QLKQSNPNHPLV 272 (290)
T ss_dssp HCHHHTTTSHHH
T ss_pred HHHHhCCCChHH
Confidence 999999998543
No 160
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.15 E-value=6.5e-06 Score=48.23 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 182 EWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
++++.+|.++..+|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 445555555555555555555555555555543
No 161
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.14 E-value=5.1e-06 Score=48.96 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642 182 EWKLLQALCYELMGKLSTAKRLFKDILKERPL 213 (235)
Q Consensus 182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~ 213 (235)
++|+.+|.+|..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 162
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=2.7e-05 Score=77.16 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=83.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHH
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR-NKEALEFVKRLIDIEPNEVEWKLLQALCYELM---GKLST 199 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~-~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~---g~~~~ 199 (235)
..+.+|++|++..+++|+.||+|-.++..+|..+...|. .++|-+.|..+.+++|++.-+|-.++.+|... -++++
T Consensus 13 l~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~ 92 (1238)
T KOG1127|consen 13 LRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDR 92 (1238)
T ss_pred HhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhH
Confidence 345679999999999999999999999999999999998 99999999999999999999999999999874 45789
Q ss_pred HHHHHHHHHHHCCCCH
Q 026642 200 AKRLFKDILKERPLLL 215 (235)
Q Consensus 200 A~~~l~kaL~~~P~~~ 215 (235)
+...|++++...++..
T Consensus 93 ~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 93 AAKCYQRAVLILENQS 108 (1238)
T ss_pred hHHHHHHHHHhhhhhh
Confidence 9999999887777653
No 163
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.13 E-value=7.1e-06 Score=48.07 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE 180 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~ 180 (235)
+++|..+|.++...|++++|+++++++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999985
No 164
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.13 E-value=5e-06 Score=49.00 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE 180 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~ 180 (235)
+++|..+|.+|..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4789999999999999999999999999999974
No 165
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.10 E-value=2.2e-05 Score=74.11 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=88.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEK--------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--------PNEVE 182 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~--------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--------P~~~~ 182 (235)
+.......+++++|+..++++++. .|.=......+|.+|..++++++|+..|++++.+- |.-+.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 334444566789999999999998 55555566679999999999999999999999752 33456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHhhchhh
Q 026642 183 WKLLQALCYELMGKLSTAKRLFKDILKERPL--------LLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~--------~~~a~~~l~~~~~~~~~~ 231 (235)
.+.++|.+|...|++++|..++++++++.-. -...+.+++.++.-.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence 7889999999999999999999999875432 256667777777665553
No 166
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.10 E-value=0.00027 Score=67.16 Aligned_cols=112 Identities=16% Similarity=0.061 Sum_probs=92.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642 120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST 199 (235)
Q Consensus 120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~ 199 (235)
.+-.+..+++++|.+.++++++.+|..++.+...|+++-..|++++|.++++.+-.+|..|-.....-+..+...|+.++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence 34445567899999999999999999999999999999999999999999999999999988887788889999999999
Q ss_pred HHHHHHHHHHHCC--CC-------HHHHHHHHHHHhhchhh
Q 026642 200 AKRLFKDILKERP--LL-------LRALHDLGRYVSMTLQI 231 (235)
Q Consensus 200 A~~~l~kaL~~~P--~~-------~~a~~~l~~~~~~~~~~ 231 (235)
|.+.+......+- .. .....+.|..|.+.++.
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999988766552 11 22335667777776654
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.05 E-value=5.1e-05 Score=74.39 Aligned_cols=103 Identities=20% Similarity=0.181 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
++..+|.....+.++..|+..-+...-|..++++|++++|..+++..-...+++....-.+-.||..+|++++|...|++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHhhchh
Q 026642 207 ILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
+++.+|. ...+.++-+.|.+-++
T Consensus 103 ~~~~~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 103 ANQKYPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred HHhhCCc-HHHHHHHHHHHHHHHH
Confidence 9999999 8888888888877654
No 168
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=8.9e-05 Score=63.60 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=84.2
Q ss_pred chHHHHHHHHh---cCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 115 ASENLKEKRDA---LMGKSEVEEMFEKLLE--------KEPRNV----------EALKVVMQGNMRRGRNKEALEFVKRL 173 (235)
Q Consensus 115 ~~~~~~e~~~~---~~~~~eA~~~~e~aL~--------~~P~~~----------~a~~~la~~~~~~g~~~eAi~~l~ka 173 (235)
++..+.++++. .+.+.+|+..|..++. ..|.++ ..+.+++++++..|+|-++++....+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444443 4567888887777663 356554 45677888999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642 174 IDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL 218 (235)
Q Consensus 174 i~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~ 218 (235)
+..+|+++.+++.+|.++...=+.++|...|.++|+++|--..+.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 999999999999999999999999999999999999999885444
No 169
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.00 E-value=0.00017 Score=56.47 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
.++..++..+...|++++|+..+++++..+|.+-.++..+..+|...|+..+|++.|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56777888889999999999999999999999999999999999999999999999988743
No 170
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.2e-05 Score=68.52 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642 152 VVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL 229 (235)
Q Consensus 152 ~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~ 229 (235)
.-|.-++..++|+.|+.+|-++|.++|..+.+|.++|.||..+.+++.+....+++++++|+.+.+++.+|.......
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 345567778899999999999999999999999999999999999999999999999999999999999988765543
No 171
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.00 E-value=0.00014 Score=69.68 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=57.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.++...|...+.++.+.+|++.+.|.....+.+...++++|-..+.++-...|. .+.|..-+.+...+|+.++|++.++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHH
Confidence 344566667777777777777777766666665555555555555555443332 3444444455555555555555555
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhch
Q 026642 206 DILKERPLLLRALHDLGRYVSMTL 229 (235)
Q Consensus 206 kaL~~~P~~~~a~~~l~~~~~~~~ 229 (235)
++|+..|+....|..+|.++.+.+
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHH
Confidence 555555555555555555554443
No 172
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.99 E-value=5e-05 Score=71.73 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=90.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEK--------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP--------NEVE 182 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~--------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P--------~~~~ 182 (235)
+..-......+++|+..|+++|.. +|.-+.++..|+.+|...|++++|..++++|+++-- +-..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444445556689999999999974 455667899999999999999999999999998632 2234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CC---HHHHHHHHHHHhhchhhc
Q 026642 183 WKLLQALCYELMGKLSTAKRLFKDILKERP-----LL---LRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P-----~~---~~a~~~l~~~~~~~~~~~ 232 (235)
.+..++.++..++++++|+.++++++++.- ++ ...+-++|.+|.+.+...
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 567789999999999999999999887543 33 567788888888776644
No 173
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=5.4e-05 Score=63.92 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRY 224 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~ 224 (235)
-+..+...|.+|--.|=++-|.-.+.+++.+.|+.+++.+.+|.-+...|+|+.|.+.|+.++++||.+--++.+.|+.
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 3456778888999999999999999999999999999999999999999999999999999999999998888777765
No 174
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.96 E-value=5.9e-05 Score=71.62 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM 227 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~ 227 (235)
.+++.+++.|-..|++++|+++++++|+..|..++.+..+|.+|...|++++|.+.++.+-++|..|--.--..+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 35588899999999999999999999999999999999999999999999999999999999999884443333433333
Q ss_pred c
Q 026642 228 T 228 (235)
Q Consensus 228 ~ 228 (235)
.
T Consensus 275 a 275 (517)
T PF12569_consen 275 A 275 (517)
T ss_pred C
Confidence 3
No 175
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00015 Score=67.00 Aligned_cols=109 Identities=24% Similarity=0.324 Sum_probs=81.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
+.+-.+.+++..+|-+++-.--+.-|-|.+....||..|+...-++.||.+++++--+.|+...|....|.|+...|+|.
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 33333344445555555544445556666666666666666777788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642 199 TAKRLFKDILKERPLLLRALHDLGRYVSM 227 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~ 227 (235)
+|.+.|+.+-...|.+...+.-|+.+...
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 99999999999999997777666655443
No 176
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=9.4e-05 Score=61.77 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-----EWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-----~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l 221 (235)
++-+..-|.-++..|+|++|..-|..|++..|... -.+.++|.+++.+++++.|++.+.++++++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 45566778889999999999999999999999754 3466789999999999999999999999999999999999
Q ss_pred HHHHhhch
Q 026642 222 GRYVSMTL 229 (235)
Q Consensus 222 ~~~~~~~~ 229 (235)
+.+|.+..
T Consensus 175 Aeayek~e 182 (271)
T KOG4234|consen 175 AEAYEKME 182 (271)
T ss_pred HHHHHhhh
Confidence 99988764
No 177
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.87 E-value=0.00021 Score=52.25 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE--VEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 132 A~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~--~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
.+..+++.++.+|+|.++.+.++..++..|++++|++.+-.+++.++++ ..++-.+-.++...|.-+.....|++-|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4677888999999999999999999999999999999999999999876 5677777777777777666666665543
No 178
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.84 E-value=0.00025 Score=66.08 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=80.2
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------
Q 026642 115 ASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--------------- 179 (235)
Q Consensus 115 ~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--------------- 179 (235)
++....++-=++.+.++-++...+||+.+|++++||..|+.-. ..-..||+++|+++++....
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 3344455555566778889999999999999999999888742 22344555555555543211
Q ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhhc
Q 026642 180 ----------EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL--LRALHDLGRYVSMT 228 (235)
Q Consensus 180 ----------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~ 228 (235)
...+...+|+|...+|+.++|++.++.+++..|.. ..++.+|...+...
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL 308 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc
Confidence 14556678999999999999999999999988863 66777777665443
No 179
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.84 E-value=0.00018 Score=65.11 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 132 A~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
-++..++.++..|+++..+..||+++++.+.|.+|-++++.+++..|+ ...+..+|.++...|+.++|.+.+++++
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555443 3444455555555555555555555554
No 180
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=7.4e-05 Score=65.82 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------------
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN----------------------------- 179 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~----------------------------- 179 (235)
+..|++++.--.+.+|.+..++..||.+|....+|.+|.+||+++-.+.|.
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 556666666666666666666666666666666666666666555554443
Q ss_pred -------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642 180 -------------------------------------EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222 (235)
Q Consensus 180 -------------------------------------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~ 222 (235)
+++..++.|.+.+..|+|++|++-|+.+++..-.++..-++++
T Consensus 106 D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA 185 (459)
T KOG4340|consen 106 DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA 185 (459)
T ss_pred CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence 4556666777777888888888888888888777777778888
Q ss_pred HHHhhchhhc
Q 026642 223 RYVSMTLQIQ 232 (235)
Q Consensus 223 ~~~~~~~~~~ 232 (235)
++..++++..
T Consensus 186 LaHy~~~qya 195 (459)
T KOG4340|consen 186 LAHYSSRQYA 195 (459)
T ss_pred HHHHhhhhHH
Confidence 8877776643
No 181
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.81 E-value=7.7e-06 Score=72.72 Aligned_cols=89 Identities=13% Similarity=0.036 Sum_probs=83.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.+..++|++.|..+++++|..+..+...+.++++.+++..||..++.+++++|+...-|-.++.+...+|+|++|..+++
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCC
Q 026642 206 DILKERPLL 214 (235)
Q Consensus 206 kaL~~~P~~ 214 (235)
.+.+++=+-
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 999988654
No 182
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.81 E-value=8.4e-06 Score=75.23 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
-+..-+...+..++|+.|+..|.++|+++|+++.++-+++.++...++|..|+..+.++++++|....+|+..|..+.+.
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34455677788999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred hhhcc
Q 026642 229 LQIQS 233 (235)
Q Consensus 229 ~~~~~ 233 (235)
....+
T Consensus 86 ~~~~~ 90 (476)
T KOG0376|consen 86 GEFKK 90 (476)
T ss_pred HHHHH
Confidence 66543
No 183
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00079 Score=59.08 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----------------------------------HH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEF----------------------------------VK 171 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~----------------------------------l~ 171 (235)
.+++.+|...|..++..+|++.++...++.+|+..|+.++|... ++
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 45678889999999999999999999999999999999877544 34
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 172 RLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 172 kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
+.+..||++.++.+.+|..|...|++++|.+.+-.+++.+-+.
T Consensus 227 ~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 227 RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 4555689999999999999999999999999999998886544
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.75 E-value=0.0011 Score=51.53 Aligned_cols=99 Identities=30% Similarity=0.365 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEP---RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN-EVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P---~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~-~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
.+++++|...+++++..+| .....+..++..+...+++++|+..++++++..+. ....+..++.++...|++++|.
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence 3344555555555554444 23344444444445555555555555555555555 3555555555555555555555
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Q 026642 202 RLFKDILKERPLLLRALHDLGRY 224 (235)
Q Consensus 202 ~~l~kaL~~~P~~~~a~~~l~~~ 224 (235)
..+.+++...|.....+..++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 223 EYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHHHHHHhhCcccHHHHhhHHHH
Confidence 55555555555543333333333
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.75 E-value=0.00046 Score=59.44 Aligned_cols=82 Identities=17% Similarity=0.113 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHH
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALH 219 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~ 219 (235)
-++.|+.-|...++.|+|++|++.|+++....|.. ..+.+.++.+++..|+|++|+...++.+.++|++ .-+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46777788888899999999999999999999876 4788899999999999999999999999999999 45556
Q ss_pred HHHHHHhh
Q 026642 220 DLGRYVSM 227 (235)
Q Consensus 220 ~l~~~~~~ 227 (235)
-.|+.+..
T Consensus 113 lkgLs~~~ 120 (254)
T COG4105 113 LKGLSYFF 120 (254)
T ss_pred HHHHHHhc
Confidence 66665443
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.00027 Score=61.98 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMR-RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~-~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
.++|..+|+++++..+-..+.|...|.+... .++.+.|.+.|+++++..|.+...|......+...|+.+.|...|+++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 6788899999987666678889988998777 456666999999999999999999998888888999999999999999
Q ss_pred HHHCCCCH
Q 026642 208 LKERPLLL 215 (235)
Q Consensus 208 L~~~P~~~ 215 (235)
+..-|...
T Consensus 97 i~~l~~~~ 104 (280)
T PF05843_consen 97 ISSLPKEK 104 (280)
T ss_dssp CCTSSCHH
T ss_pred HHhcCchh
Confidence 88766654
No 187
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00012 Score=65.87 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 120 KEKRDALMGKSEVEEMFEKLLEKEPRNV-EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~-~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
.+.....+++..|+..++-.+..+.... .....+|.+++..|+|++|+..|+-+.+.+-.+.+.+.++|.|+..+|.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4455566779999999998887654433 456668999999999999999999999987778899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH
Q 026642 199 TAKRLFKDILKERPLLLRALHDLG 222 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~~~a~~~l~ 222 (235)
+|....+++- ..|-..+.++.++
T Consensus 109 eA~~~~~ka~-k~pL~~RLlfhla 131 (557)
T KOG3785|consen 109 EAKSIAEKAP-KTPLCIRLLFHLA 131 (557)
T ss_pred HHHHHHhhCC-CChHHHHHHHHHH
Confidence 9998887652 2333345555444
No 188
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.73 E-value=0.00014 Score=59.53 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR-----------NKEALEFVKRLIDIEPNEVEWKLLQALC 190 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~-----------~~eAi~~l~kai~l~P~~~~a~~~lA~~ 190 (235)
+++|+.-|+++|.++|+..+++..+|.+|...+. |++|.++|+++++.+|++..++..|-.+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 6899999999999999999999999999977543 7889999999999999998887776554
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.72 E-value=0.0011 Score=51.56 Aligned_cols=101 Identities=26% Similarity=0.272 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQ-GNMRRGRNKEALEFVKRLIDIEP---NEVEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~-~~~~~g~~~eAi~~l~kai~l~P---~~~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
+.++++.+++++..++.+.......+. ++...|++++|+..+++++..+| ........++..+...+++++|...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 556667777777666665555555555 67777777777777777766665 34555555666666777777777777
Q ss_pred HHHHHHCCC-CHHHHHHHHHHHhhch
Q 026642 205 KDILKERPL-LLRALHDLGRYVSMTL 229 (235)
Q Consensus 205 ~kaL~~~P~-~~~a~~~l~~~~~~~~ 229 (235)
.+++...+. ....+..++..+...+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcc
Confidence 777777777 4666666666665543
No 190
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.72 E-value=7.3e-05 Score=43.78 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642 182 EWKLLQALCYELMGKLSTAKRLFKDILKERPL 213 (235)
Q Consensus 182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~ 213 (235)
++|+.+|.+|..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34555555555555555555555555555553
No 191
>PRK10941 hypothetical protein; Provisional
Probab=97.71 E-value=0.00056 Score=59.83 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642 149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL 218 (235)
Q Consensus 149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~ 218 (235)
.+.++-.+|.+.++++.|+.+.++++.++|+++.-+..+|.+|..+|.+..|...++..++..|+++.+-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4556677889999999999999999999999999999999999999999999999999999999995544
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.0011 Score=55.05 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=79.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID-IEPNEVEWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~-l~P~~~~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
+..+.+...+...+.++.-|.. .-.+.||....+.|++.||...|++++. +.-+++.....+|++....|++..|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 3334555666666666666653 4567799999999999999999999986 6778899999999999999999999999
Q ss_pred HHHHHHHCCCC--HHHHHHHHHHHhh
Q 026642 204 FKDILKERPLL--LRALHDLGRYVSM 227 (235)
Q Consensus 204 l~kaL~~~P~~--~~a~~~l~~~~~~ 227 (235)
++++.+.+|.. +..+.-++..+..
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHh
Confidence 99999999876 4444444444443
No 193
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.68 E-value=0.0019 Score=58.54 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=96.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
.++++.+|++...+.-+..+.-.-++..-+....+.|+++.|-.++.++-++.+++ .-....+++++...||++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36789999999999888888878888888999999999999999999999996655 55677899999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 204 FKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
..++++..|.+..++.-...+|.+.++..+
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 999999999999999988888888877543
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00043 Score=60.10 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=81.3
Q ss_pred HhcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642 124 DALMGKSEVEEMFEKLLE------KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL 197 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~------~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~ 197 (235)
-+.++.+.|...|+.+-+ .--++..+..+.+.+|.-++++.+|...+++.++.||.++.+.+++|.|+.+.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 334455666666663322 22345677888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCC---HHHHHHHHHHH
Q 026642 198 STAKRLFKDILKERPLL---LRALHDLGRYV 225 (235)
Q Consensus 198 ~~A~~~l~kaL~~~P~~---~~a~~~l~~~~ 225 (235)
.+|++.++.+++.+|.. ....+++-.+|
T Consensus 303 ~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 303 KDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 99999999999999987 34445554443
No 195
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.66 E-value=9.2e-05 Score=43.34 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE 180 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~ 180 (235)
.++|..+|.+|...|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3689999999999999999999999999999853
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.64 E-value=0.00018 Score=62.96 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHh--CCC----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHc
Q 026642 128 GKSEVEEMFEKLLEK--EPR----NVEALKVVMQGNMRR-GRNKEALEFVKRLIDIEP--NE----VEWKLLQALCYELM 194 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~--~P~----~~~a~~~la~~~~~~-g~~~eAi~~l~kai~l~P--~~----~~a~~~lA~~~~~~ 194 (235)
+.++|++.|+++++. .-+ -+..+..+|.+|... |++++|+++|++++++.. +. ...+...|.++...
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 678999999999885 222 246788999999999 999999999999998642 22 34566789999999
Q ss_pred CCHHHHHHHHHHHHHHCCCC------H-HHHHHHHHHHhhchh
Q 026642 195 GKLSTAKRLFKDILKERPLL------L-RALHDLGRYVSMTLQ 230 (235)
Q Consensus 195 g~~~~A~~~l~kaL~~~P~~------~-~a~~~l~~~~~~~~~ 230 (235)
|+|++|++.|+++....-++ + ..++..++++...+|
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D 211 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD 211 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC
Confidence 99999999999998754332 2 345666777666655
No 197
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.62 E-value=0.0018 Score=66.57 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=47.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEK----EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE-PNEVEWKLLQALCYEL 193 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~----~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-P~~~~a~~~lA~~~~~ 193 (235)
+.......++.++|.+.|++..+. .| |...|..+...|.+.|++++|++.|+++.+.+ +.+...|..+...|..
T Consensus 548 LI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 548 LISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 344444445555666666555442 22 24455555555555555555555555555544 2334455555555555
Q ss_pred cCCHHHHHHHHHHHHHH
Q 026642 194 MGKLSTAKRLFKDILKE 210 (235)
Q Consensus 194 ~g~~~~A~~~l~kaL~~ 210 (235)
.|++++|.+.|+++.+.
T Consensus 627 ~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKK 643 (1060)
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 55555555555555443
No 198
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.59 E-value=0.00014 Score=41.97 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 182 EWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
++++.+|.++...|++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356666777777777777777777777776653
No 199
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00044 Score=59.42 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLID--------IEPNEVEW----------KLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~--------l~P~~~~a----------~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
...++..-|.-++++|+|+||...|..||. ..|.+++| +.++++|+...|+|-++++....+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 456788889999999999999999988874 35766655 567899999999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHhh
Q 026642 208 LKERPLLLRALHDLGRYVSM 227 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~~ 227 (235)
|..+|+|+.+|+..|.....
T Consensus 257 L~~~~~nvKA~frRakAhaa 276 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAA 276 (329)
T ss_pred HhcCCchHHHHHHHHHHHHh
Confidence 99999999999999887654
No 200
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.55 E-value=0.0023 Score=65.77 Aligned_cols=115 Identities=9% Similarity=-0.003 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHH
Q 026642 117 ENLKEKRDALMGKSEVEEMFEKLLEKE-PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI----EPNEVEWKLLQALCY 191 (235)
Q Consensus 117 ~~~~e~~~~~~~~~eA~~~~e~aL~~~-P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l----~P~~~~a~~~lA~~~ 191 (235)
..+.......+++++|++.|++..+.. .-|...|..+...|.+.|++++|.+.+++..+. .|+ ...|..+..+|
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay 589 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence 445666666777899999998887653 224788999999999999999999999998763 444 56777788889
Q ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhchhhc
Q 026642 192 ELMGKLSTAKRLFKDILKER-PLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 192 ~~~g~~~~A~~~l~kaL~~~-P~~~~a~~~l~~~~~~~~~~~ 232 (235)
...|++++|.+.|+++.+.+ +.+...|..+...|.+.++.+
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Confidence 99999999999999998876 344677777777777766543
No 201
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.51 E-value=0.00074 Score=66.26 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
.+..++|.+.|+...+... -+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++.|...
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3445666666666655322 23456777788888888888888877664 2333 356677788888889999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 204 FKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
++++++.+|++...|..++.+|.+.++-+
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 99999999998888888888888776643
No 202
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.00052 Score=65.00 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHH---------------------------------HHHHHHHcCCHHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKV---------------------------------VMQGNMRRGRNKEALEFVKR 172 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~---------------------------------la~~~~~~g~~~eAi~~l~k 172 (235)
++++++|++...+++...|++.++... .+++.++.++.|+|+++++
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence 344666666666666666666655544 4455555555555555555
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642 173 LIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221 (235)
Q Consensus 173 ai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l 221 (235)
-+++.+.......|+++|.+|+|++|.+.|+.+++.+-++.+.....
T Consensus 104 --~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 104 --GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred --cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34555666777778888888888888888888877777665444433
No 203
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.49 E-value=0.0014 Score=61.65 Aligned_cols=105 Identities=20% Similarity=0.133 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----EWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----~a~~~lA~~~~~~g~~~~A~ 201 (235)
....+.|++.++...+..|+..-.+...|+++...|+.++|++.|++++....... -.++.+|.++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 33468899999999999999999999999999999999999999999996554433 34667999999999999999
Q ss_pred HHHHHHHHHCCCC-HHHHHHHHHHHhhchh
Q 026642 202 RLFKDILKERPLL-LRALHDLGRYVSMTLQ 230 (235)
Q Consensus 202 ~~l~kaL~~~P~~-~~a~~~l~~~~~~~~~ 230 (235)
+.+.++++.+.-. .-..|..|.++...++
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 9999999866543 3333555555555443
No 204
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.48 E-value=0.0031 Score=56.42 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGR------------NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 133 ~~~~e~aL~~~P~~~~a~~~la~~~~~~g~------------~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
...|++.++.+|+|+++|..++...-..-. .+.-+..|++|++.+|++...+..+-.+.....+-++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 456888999999999999999887655422 45678899999999999999999998899999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642 201 KRLFKDILKERPLLLRALHDLGRYVSM 227 (235)
Q Consensus 201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~ 227 (235)
.+.+++++..+|++...|.++....+.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999999887776554
No 205
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.46 E-value=0.002 Score=63.25 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=77.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHH
Q 026642 121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP-NEVEWKLLQALCYELMGKLST 199 (235)
Q Consensus 121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P-~~~~a~~~lA~~~~~~g~~~~ 199 (235)
......+..++|.+.|++. .+.|...|..+...|.+.|++++|++.|++..+..- -+...+..+..++...|++++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 3334455678888888765 345788899999999999999999999988876431 235567777777888888888
Q ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHhhchh
Q 026642 200 AKRLFKDILKER-PLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 200 A~~~l~kaL~~~-P~~~~a~~~l~~~~~~~~~ 230 (235)
|.+.++.+++.. +.+..++..++..|.+.++
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC
Confidence 888888777765 4446666666777766555
No 206
>PLN03077 Protein ECB2; Provisional
Probab=97.43 E-value=0.002 Score=64.74 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=86.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK 196 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~ 196 (235)
+...-...+..++|.+.|++..+..+ -+.+.|..++.++.+.|++++|++.+++. ...|+ +..|..+-.++...|+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC
Confidence 33344445567889999998875432 24678999999999999999999999885 45666 4555555557788899
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
.+.|....+++++++|++...|.-++.+|.+.++-
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKW 707 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh
Confidence 99999999999999999999998888888776653
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.41 E-value=0.00037 Score=48.55 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=44.1
Q ss_pred HHhcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642 123 RDALMGKSEVEEMFEKLLEK---E----PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI 176 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~---~----P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l 176 (235)
....+++++|++.|+++++. . |.-+.++..+|.++...|++++|++++++++++
T Consensus 15 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 15 YRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455689999999999865 1 223678999999999999999999999999986
No 208
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0034 Score=54.50 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
.+-|++.+++..+.+ +-..+..||..+.+ .+++.+|.-+|++.-+..+-.+......|.|...+|+|++|...+
T Consensus 153 ~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 153 FDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 355666666666654 33455557666655 346889999999999877777888889999999999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 205 KDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 205 ~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
+.+|..+++++.++.|+..+-...+.
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999887655443
No 209
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.37 E-value=0.0017 Score=56.85 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CH-HHHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKE--PRN----VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN------EV-EWKLLQALCYEL 193 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~--P~~----~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~------~~-~a~~~lA~~~~~ 193 (235)
+++++|++.|+++++.. .+. .+.+..+|.++.+.|+|++|++.|+++....-+ .+ +.++..+.|+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 46899999999999862 112 356788899999999999999999999985422 12 345567789999
Q ss_pred cCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHh
Q 026642 194 MGKLSTAKRLFKDILKERPLL-----LRALHDLGRYVS 226 (235)
Q Consensus 194 ~g~~~~A~~~l~kaL~~~P~~-----~~a~~~l~~~~~ 226 (235)
+||+..|.+.+++....+|.. .....++...+.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999976 344444444443
No 210
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.36 E-value=0.00037 Score=40.16 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE 180 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~ 180 (235)
+++..+|.++.+.|++++|++.|+++++..|+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999974
No 211
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.31 E-value=0.00046 Score=41.38 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRL 173 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~ka 173 (235)
|..||.+|.+.|+|++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 212
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00091 Score=60.31 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------hhCC------------C
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLI--------------DIEP------------N 179 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai--------------~l~P------------~ 179 (235)
-++|++|...|+-+.+.+.-+.+.|..|+..++-.|.|.||.....++- +++- +
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD 149 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD 149 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 4568999999999999888889999999999999999999987755432 2221 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 180 EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 180 ~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
..+-...+|-+.+....|.+|++.|.++|..+|+....-..++++|.+.
T Consensus 150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl 198 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKL 198 (557)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc
Confidence 2344556788888888899999999999999998877777788887764
No 213
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.23 E-value=0.00068 Score=40.60 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCC
Q 026642 183 WKLLQALCYELMGKLSTAKRLFKDIL--KERPLL 214 (235)
Q Consensus 183 a~~~lA~~~~~~g~~~~A~~~l~kaL--~~~P~~ 214 (235)
++..+|.+|..+|+|++|+++|+++| ..+|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 47899999999999999999999955 555544
No 214
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.23 E-value=0.0038 Score=50.33 Aligned_cols=85 Identities=22% Similarity=0.220 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
.++++..+...--..|+.++.-..-|.+++..|+|.+|+..++.+.+..|..+.+.-.+|.|++.+||.+ =..+-++++
T Consensus 26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evl 104 (160)
T PF09613_consen 26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-WRRYADEVL 104 (160)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence 5677778877778899999999999999999999999999999999999999999999999999999974 223345666
Q ss_pred HHCCCC
Q 026642 209 KERPLL 214 (235)
Q Consensus 209 ~~~P~~ 214 (235)
+..++.
T Consensus 105 e~~~d~ 110 (160)
T PF09613_consen 105 ESGADP 110 (160)
T ss_pred hcCCCh
Confidence 666544
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.23 E-value=0.0055 Score=47.84 Aligned_cols=52 Identities=19% Similarity=0.034 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642 181 VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 181 ~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~ 232 (235)
..+...++..+...|++++|+..+++++..+|.+..+|..+..+|.+.++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~ 113 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRA 113 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHH
Confidence 3455667888999999999999999999999999999999999999888754
No 216
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0021 Score=57.40 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=80.6
Q ss_pred chHHHHHHHHhc---CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642 115 ASENLKEKRDAL---MGKSEVEEMFEKLLEKEPR----NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQ 187 (235)
Q Consensus 115 ~~~~~~e~~~~~---~~~~eA~~~~e~aL~~~P~----~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~l 187 (235)
.+..+.++++.- ..+..|+..|.+.|+.+-. ++..|.+.+.+.+..|+|..|+....+++.++|.+..+++.=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 344566655542 3467899999999987433 445678888889999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 188 ALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 188 A~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
|.|+..+.++++|...++..++.+-+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999888888888887776554
No 217
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.17 E-value=0.00071 Score=57.60 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=29.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 158 ~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
.+.++.+.|.+.|.+++++-|++...|+.+|......|+++.|.+.|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344455555555555555555555555555555555555555555555555555544
No 218
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.16 E-value=0.0023 Score=42.10 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA 188 (235)
++.++..+.+.|+|++|.++.+.+++.+|++.++...+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 344444445555555555555555555555544444433
No 219
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.004 Score=51.73 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=61.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPR-N--VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKL 197 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~-~--~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~ 197 (235)
...+.+++++|+..+++++...-+ + .-+-.+|+++.+++|++|+|+..++...+ ++. ...-..+|.++...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCch
Confidence 334455677888888877754221 1 12456678888888888888888776533 222 33455678888888888
Q ss_pred HHHHHHHHHHHHHCCCC
Q 026642 198 STAKRLFKDILKERPLL 214 (235)
Q Consensus 198 ~~A~~~l~kaL~~~P~~ 214 (235)
++|+..|+++++.++..
T Consensus 176 ~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 176 QEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHccCCh
Confidence 88888888888887544
No 220
>PLN03077 Protein ECB2; Provisional
Probab=97.15 E-value=0.0077 Score=60.52 Aligned_cols=106 Identities=12% Similarity=0.199 Sum_probs=67.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI--EPNEVEWKLLQALCYELMGKLST 199 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l--~P~~~~a~~~lA~~~~~~g~~~~ 199 (235)
.....++.++|.+.|++. +.|...|..+...|.+.|+.++|++.|++..+. .|+... +..+-.++...|+.++
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHH
Confidence 333345567777777665 456777888888888888888888888877663 455433 3333345677777777
Q ss_pred HHHHHHHHHHHCCCC--HHHHHHHHHHHhhchhhc
Q 026642 200 AKRLFKDILKERPLL--LRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 200 A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~~~~~ 232 (235)
|.+.|+.+.+.+.-. ...|.-++.++.+.++.+
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 777777776443222 455666666666666543
No 221
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.15 E-value=0.0022 Score=46.79 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 165 EALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 165 eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
..+..+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.++++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 35778999999999999999999999999999999999999999999877
No 222
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.0044 Score=55.63 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI-EPNE---VEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l-~P~~---~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
.-+|...+++.|+..|.|.-++..--.+++-+|+.+.-...++|++-. +++- ....-.+|-.+...|-|++|.+..
T Consensus 119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A 198 (491)
T KOG2610|consen 119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQA 198 (491)
T ss_pred ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHH
Confidence 356777889999999999999999999999999999999999999987 7776 444556778899999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 205 KDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 205 ~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
++++++++.+.-+.+.++-++.....
T Consensus 199 ~ralqiN~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 199 DRALQINRFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred HhhccCCCcchHHHHHHHHHHHhcch
Confidence 99999999999998888888766554
No 223
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0056 Score=58.18 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
.|+|+..++ -.++.+...+...|+++.++|+|++|++.|+.+++.+-++.+........-.... .... +.+.+
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---l~~~-~~q~v 167 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---LQVQ-LLQSV 167 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---hhHH-HHHhc
Confidence 467777766 3466777789999999999999999999999999988887766554333221110 0111 44555
Q ss_pred HHCCCC-HHHHHHHHHHHhhchh
Q 026642 209 KERPLL-LRALHDLGRYVSMTLQ 230 (235)
Q Consensus 209 ~~~P~~-~~a~~~l~~~~~~~~~ 230 (235)
...|++ -..+||.+-.+...++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhccc
Confidence 556654 6788888888776655
No 224
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.07 E-value=0.00095 Score=36.64 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642 183 WKLLQALCYELMGKLSTAKRLFKDILKERPL 213 (235)
Q Consensus 183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~ 213 (235)
++..+|.++..+|++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555553
No 225
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.06 E-value=0.0022 Score=56.87 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=53.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642 156 GNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222 (235)
Q Consensus 156 ~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~ 222 (235)
-..++|+.+.|...++.+++++|+++++...+|......++.-+|-.+|-++|..+|.|.+++.+..
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3456788888888888888888888888888888888888888888888888888888877776654
No 226
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.05 E-value=0.0042 Score=40.79 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642 182 EWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221 (235)
Q Consensus 182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l 221 (235)
+..+.+|..++.+|+|++|.++.+.+|+.+|+|..+..-.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4678899999999999999999999999999996555433
No 227
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.01 Score=49.37 Aligned_cols=101 Identities=13% Similarity=0.011 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 131 EVEEMFEKLLEKEPRNVE---ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 131 eA~~~~e~aL~~~P~~~~---a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
+.+...++....++.+.. +...++..+...|++++|+..++.++..--|. .-+..++|+++...|++|+|.+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666667777777777765 45677889999999999999999999765443 346678999999999999999999
Q ss_pred HHHHHHCCCC-HHHHHHHHHHHhhchhhcc
Q 026642 205 KDILKERPLL-LRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 205 ~kaL~~~P~~-~~a~~~l~~~~~~~~~~~~ 233 (235)
+..- ++.. .....-.|.++..+++..+
T Consensus 150 ~t~~--~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 150 DTIK--EESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred hccc--cccHHHHHHHHhhhHHHHcCchHH
Confidence 7763 2222 4455667777777776543
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.97 E-value=0.03 Score=51.15 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=74.7
Q ss_pred HHHHHHHh---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhCCC-----
Q 026642 118 NLKEKRDA---LMGKSEVEEMFEK-LLEKEPRNVEALKVVMQGNMR---------RGRNKEALEFVKRLIDIEPN----- 179 (235)
Q Consensus 118 ~~~e~~~~---~~~~~eA~~~~e~-aL~~~P~~~~a~~~la~~~~~---------~g~~~eAi~~l~kai~l~P~----- 179 (235)
.|.-..+. .++.++|++.+.+ +...++.+++.+-.+|++|-+ ....++|+.+|.++.+.+|+
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI 263 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI 263 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH
Confidence 34444444 7889999999999 555678899999999999855 23478999999999999876
Q ss_pred ----------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 180 ----------------------------------------EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 180 ----------------------------------------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
+......++.+....|++++|.+.+++++++.|..
T Consensus 264 N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 264 NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 12222346677777888889999999988888776
No 229
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.97 E-value=0.0024 Score=56.64 Aligned_cols=71 Identities=18% Similarity=0.086 Sum_probs=64.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642 120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190 (235)
Q Consensus 120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~ 190 (235)
..+....+..++|...|+.+++.+|.+++++..+|......++.-+|-++|-+++.++|.+.++..++++.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34445566789999999999999999999999999999999999999999999999999999999988753
No 230
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.95 E-value=0.0014 Score=35.86 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE 180 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~ 180 (235)
+++..+|.++...|++++|+.+++++++.+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999998863
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.94 E-value=0.0017 Score=59.52 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=83.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHH------HHHhhCCCCHHHHHHHHHH
Q 026642 121 EKRDALMGKSEVEEMFEKLLEKEPRNVE----ALKVVMQGNMRRGRNKEALEFVK------RLIDIEPNEVEWKLLQALC 190 (235)
Q Consensus 121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~----a~~~la~~~~~~g~~~eAi~~l~------kai~l~P~~~~a~~~lA~~ 190 (235)
+..-..+++...+..|+.+++..-+|.. .|..||..|+-.++|++|+++-. +.+--.-..+..--++|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3444455678889999999998766654 56788999999999999998843 3332223345666789999
Q ss_pred HHHcCCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHhhchh
Q 026642 191 YELMGKLSTAKRLFKDILKERP--LL----LRALHDLGRYVSMTLQ 230 (235)
Q Consensus 191 ~~~~g~~~~A~~~l~kaL~~~P--~~----~~a~~~l~~~~~~~~~ 230 (235)
+..+|.|++|+-+..+-|...- ++ .+++|++|.+|+.++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 9999999999999888665332 12 7899999999998875
No 232
>PRK10941 hypothetical protein; Provisional
Probab=96.93 E-value=0.013 Score=51.33 Aligned_cols=72 Identities=11% Similarity=0.004 Sum_probs=65.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL 193 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~ 193 (235)
....+++++.|.++.+..+..+|+++.-+...|.+|.+.|.+..|...++.-++..|+++.+...+.++...
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 334566789999999999999999999999999999999999999999999999999999998888776543
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0056 Score=53.32 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHHcCCHHHH
Q 026642 128 GKSEVEEMFEKLLEKE-PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE----P--NEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~-P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~----P--~~~~a~~~lA~~~~~~g~~~~A 200 (235)
++.-....+.++++.+ |.++.....||.+.++-|+.+.|..+++++-+.. . ++.....+.+.+|...++|..|
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a 271 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA 271 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence 3455678899999988 7889999999999999999999999999665432 2 2345566788899999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 201 KRLFKDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
...|.+++..||.++-+..+.+++..-.++
T Consensus 272 ~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 272 HRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 999999999999998888887777554444
No 234
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.87 E-value=0.0081 Score=47.84 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+.++++..+...--..|+.++.-..-|.+++..|+|++|+..++.+.+-.+..+...-.++.|++.+||.+= ..+-+++
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W-r~~A~~~ 103 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW-HVHADEV 103 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH-HHHHHHH
Confidence 356777777777778999999999999999999999999999999999988999999999999999999742 2233344
Q ss_pred HHHCCCC
Q 026642 208 LKERPLL 214 (235)
Q Consensus 208 L~~~P~~ 214 (235)
++.+++.
T Consensus 104 le~~~~~ 110 (153)
T TIGR02561 104 LARDADA 110 (153)
T ss_pred HHhCCCH
Confidence 5554443
No 235
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.84 E-value=0.022 Score=45.96 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~ 226 (235)
..++..+...-.+.++.+++...++-+--+.|+.++....-|.++...|+|++|+..++.+....|....+---++.++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34666777777888999999999999999999999999999999999999999999999999999988766666666666
Q ss_pred hchh
Q 026642 227 MTLQ 230 (235)
Q Consensus 227 ~~~~ 230 (235)
..+|
T Consensus 90 ~~~D 93 (160)
T PF09613_consen 90 ALGD 93 (160)
T ss_pred HcCC
Confidence 6555
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0098 Score=52.34 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------
Q 026642 133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD------ 206 (235)
Q Consensus 133 ~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k------ 206 (235)
.+++.+.+-. ..+.-..-+.-.+..|++.+|...+..++..+|++.++...+|.+|...|+.+.|...+..
T Consensus 123 r~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 123 RQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 4455555443 4455666677788999999999999999999999999999999999999999766554433
Q ss_pred ----------------------------HHHHCCCCHHHHHHHHHHHhhchhhccc
Q 026642 207 ----------------------------ILKERPLLLRALHDLGRYVSMTLQIQSL 234 (235)
Q Consensus 207 ----------------------------aL~~~P~~~~a~~~l~~~~~~~~~~~~~ 234 (235)
.+..+|+|..+-+.++..++..++.++.
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445678888888888887777766543
No 237
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.80 E-value=0.022 Score=49.94 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV---EWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~---~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
.+.+.|..+|+.+++..|++.+.|......++..|+.+.|-..|++++..-+... ..|......-...|+.+...+.
T Consensus 50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456699999999999999999999999999999999999999999999866655 5778888888999999999999
Q ss_pred HHHHHHHCCCCH
Q 026642 204 FKDILKERPLLL 215 (235)
Q Consensus 204 l~kaL~~~P~~~ 215 (235)
.+++.+..|++.
T Consensus 130 ~~R~~~~~~~~~ 141 (280)
T PF05843_consen 130 EKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHTTTS-
T ss_pred HHHHHHHhhhhh
Confidence 999999999853
No 238
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.028 Score=52.77 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 026642 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK-LSTAKRLFKDILK 209 (235)
Q Consensus 131 eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~-~~~A~~~l~kaL~ 209 (235)
.-...|+.++..-+.|+..|.....-..+.+.+.+--..|.+++..+|++++.|..-|.=.+.-+. .+.|.+.|.+.|.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345789999999999999999998877777779999999999999999999999998876666666 9999999999999
Q ss_pred HCCCCHHHHHHHHH
Q 026642 210 ERPLLLRALHDLGR 223 (235)
Q Consensus 210 ~~P~~~~a~~~l~~ 223 (235)
.+|+.+..|.....
T Consensus 169 ~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFR 182 (568)
T ss_pred cCCCChHHHHHHHH
Confidence 99999877754433
No 239
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.023 Score=49.47 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK-RLFKDIL 208 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~-~~l~kaL 208 (235)
.+|.=+|++.-++.+-.+..+.+.+.+.+.+|+|++|...++.++..++++++...++-.+-...|...++. +.+.+..
T Consensus 190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 445567888888788889999999999999999999999999999999999999999999988898886655 4557777
Q ss_pred HHCCCCH
Q 026642 209 KERPLLL 215 (235)
Q Consensus 209 ~~~P~~~ 215 (235)
..+|.++
T Consensus 270 ~~~p~h~ 276 (299)
T KOG3081|consen 270 LSHPEHP 276 (299)
T ss_pred hcCCcch
Confidence 8888884
No 240
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0086 Score=53.54 Aligned_cols=84 Identities=17% Similarity=0.078 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE----VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~----~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l 221 (235)
.++-+..=|.-|++.++|..|+..|.+.|+..-.+ +..|.++|.+....|+|..|+....++++.+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 34556677999999999999999999999976554 45688999999999999999999999999999999998877
Q ss_pred HHHHhhch
Q 026642 222 GRYVSMTL 229 (235)
Q Consensus 222 ~~~~~~~~ 229 (235)
+.+.....
T Consensus 160 Akc~~eLe 167 (390)
T KOG0551|consen 160 AKCLLELE 167 (390)
T ss_pred hHHHHHHH
Confidence 77655443
No 241
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.70 E-value=0.065 Score=41.34 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=65.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hhCCCCH
Q 026642 121 EKRDALMGKSEVEEMFEKLLEKEP------------RNVEALKVVMQGNMRRGRNKEALEFVKRLI-------DIEPNEV 181 (235)
Q Consensus 121 e~~~~~~~~~eA~~~~e~aL~~~P------------~~~~a~~~la~~~~~~g~~~eAi~~l~kai-------~l~P~~~ 181 (235)
++......+++|...+.++.+... -|+-.+..|+..+...|+|++++...++++ +++.+..
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 344445668899988888887532 144567888899999999999877766666 4666665
Q ss_pred HHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 182 EWK----LLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 182 ~a~----~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
..| +.+|.++...|+.++|++.|+.+-+
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 555 4689999999999999999998765
No 242
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.67 E-value=0.026 Score=56.70 Aligned_cols=106 Identities=15% Similarity=-0.010 Sum_probs=77.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNV-----EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYEL 193 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~-----~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~ 193 (235)
..+++++|...++++++..+... .++..+|.++...|++++|...++++++..... ...+..+|.++..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 35578999999999998544322 356778889999999999999999999764321 2455678999999
Q ss_pred cCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHhhchh
Q 026642 194 MGKLSTAKRLFKDILKERPL--------LLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 194 ~g~~~~A~~~l~kaL~~~P~--------~~~a~~~l~~~~~~~~~ 230 (235)
.|++++|...+++++..... ....+..++.++...++
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999999885221 12334455555555544
No 243
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.0051 Score=54.49 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=65.7
Q ss_pred HHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 139 LLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 139 aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
.+++-| ++++.....|.+.++.|++++|++-++.+++....++..-+++|.+++..|+|+.|.++..++++..
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 445545 7889999999999999999999999999999999999999999999999999999999988877643
No 244
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.61 E-value=0.023 Score=49.92 Aligned_cols=79 Identities=24% Similarity=0.330 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
...+...+++++. ....++..++..+...|+++.++..+++++..+|.+-..|..+..+|+..|+..+|+..|+++-+
T Consensus 138 ~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 138 DEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444444444443 34678889999999999999999999999999999999999999999999999999999998866
Q ss_pred H
Q 026642 210 E 210 (235)
Q Consensus 210 ~ 210 (235)
.
T Consensus 216 ~ 216 (280)
T COG3629 216 T 216 (280)
T ss_pred H
Confidence 4
No 245
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.58 E-value=0.033 Score=57.68 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--EVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
++|.++|+..++.--+....|..++..++++++-++|-..+++|++-=|. ..+.....|++.+..||-+.+...|+-.
T Consensus 1547 ~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1547 DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 44444444444444444445555555555555444555555555544444 3444444455555555555555555555
Q ss_pred HHHCCCCHHHHHHHHHHHhhc
Q 026642 208 LKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~~~ 228 (235)
|.-+|.-...|.-++..-.+.
T Consensus 1627 l~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1627 LSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred HhhCccchhHHHHHHHHHHcc
Confidence 555555444444444444443
No 246
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.012 Score=51.18 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL 218 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~ 218 (235)
...+=..+.+.++++.|..+.++++.++|+++.-+..+|.+|.++|-+.-|+..++..++.-|++..+-
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 444555788999999999999999999999999999999999999999999999999999999995443
No 247
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.04 Score=51.59 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHH-HHHHHHHHHHcCC
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEW-KLLQALCYELMGK 196 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a-~~~lA~~~~~~g~ 196 (235)
|.+-.....+.|....+|++.|+-.|.|-.+|...|.+-...|+.+.|-..|+-|+...--+ ++. |-..-.--...|+
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 55555555668999999999999999999999999999999999999999999999875444 332 2233455677899
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642 197 LSTAKRLFKDILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~ 226 (235)
+++|.++|+++|+..+. ..+|...+..-.
T Consensus 523 ~ekaR~LYerlL~rt~h-~kvWisFA~fe~ 551 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQH-VKVWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHHHHhccc-chHHHhHHHHhc
Confidence 99999999999987754 558877777654
No 248
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.078 Score=43.65 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------
Q 026642 128 GKSEVEEMFEKLLEKEPRN--VEALKVVMQGNMRRGRNKEALEFVKRLIDIE---------------------------- 177 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~--~~a~~~la~~~~~~g~~~eAi~~l~kai~l~---------------------------- 177 (235)
..++|...|..+-+.+-.+ .-+....+-+..+.|+..+|+.+|+.+-.-.
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~ 152 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVS 152 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHH
Confidence 3567777766654443222 2345555666677777777777766543322
Q ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 178 -----------PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 178 -----------P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
|--..++-.||..-+..|++.+|.+.|.++.. |.+.++...+.+.++....+
T Consensus 153 srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldlI~ 215 (221)
T COG4649 153 SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDLID 215 (221)
T ss_pred HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHHHh
Confidence 22346677789999999999999999988865 66667777777777766544
No 249
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.46 E-value=0.043 Score=55.11 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=77.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPR---------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-----EWKLLQALCY 191 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~---------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-----~a~~~lA~~~ 191 (235)
.+++++|...++++.+.-+. ..+....++.++...|++++|..+++++++..+... .+...+|.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 44678888888877654221 234556678888999999999999999998655432 3456789999
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhh
Q 026642 192 ELMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQI 231 (235)
Q Consensus 192 ~~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~ 231 (235)
...|++++|...+++++...... ..++.+++.++...++.
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~ 547 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL 547 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence 99999999999999998764432 34556677777666653
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.43 E-value=0.05 Score=51.15 Aligned_cols=80 Identities=13% Similarity=0.058 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--EVEWKLLQALCYELMGKLSTAKRLFKDILKE-RPLLLRALHDLGRY 224 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~-~P~~~~a~~~l~~~ 224 (235)
.+...+|.+.-+.|+.+||++.+..+++.+|. +...+.++..++..+++|+++...+.+.-+. -|+.+...+..+++
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 34567888889999999999999999998876 4568999999999999999999999886432 25566666766666
Q ss_pred Hhh
Q 026642 225 VSM 227 (235)
Q Consensus 225 ~~~ 227 (235)
-.+
T Consensus 340 kaR 342 (539)
T PF04184_consen 340 KAR 342 (539)
T ss_pred HHH
Confidence 443
No 251
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.39 E-value=0.034 Score=57.59 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
.+.-.+.|++|.+.. +--..+..|..+|.+.+++++|.+.|+..++..-.....|..+|..+....+-++|...++++|
T Consensus 1513 eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344557777776642 3346777888888888888888888888888777777888888888888888888888888888
Q ss_pred HHCCC--CHHHHHHHHHHHhhchhhcc
Q 026642 209 KERPL--LLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 209 ~~~P~--~~~a~~~l~~~~~~~~~~~~ 233 (235)
+.-|. |+....-.+.+..+.+|.+.
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchh
Confidence 88887 67888888888887777654
No 252
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.33 E-value=0.12 Score=40.73 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642 146 NVEALKVVMQGNMRRGR---NKEALEFVKRLID-IEPNE-VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL 218 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~---~~eAi~~l~kai~-l~P~~-~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~ 218 (235)
..+..+++++.+....+ ..+.+.+++.+++ -.|+. -+..+.+|..++..|+|++++++.+.+++.+|+|..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 45677888888887655 5578999999997 55654 56788899999999999999999999999999995544
No 253
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.33 E-value=0.022 Score=53.93 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=68.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 137 EKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 137 e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
++.++.||.|+++|..|.+-+..+ .++++-+.|++.+...|..+.+|-......+...+|+.-.+.|.++|..-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 667889999999999999988777 99999999999999999999999999999999999999999999988644
No 254
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.30 E-value=0.027 Score=53.86 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVE-ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~-a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
+...|+.++..++...|...+ ...+|+.+.++.|-..+|-..+.+++.++-..+-..+.+|.+|..+.+.++|++.|+.
T Consensus 622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~ 701 (886)
T KOG4507|consen 622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQ 701 (886)
T ss_pred CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHH
Confidence 357899999999998886544 5788999999999889999999999999988899999999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHH
Q 026642 207 ILKERPLLLRALHDLGRYV 225 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~ 225 (235)
+++++|++...-..|..+-
T Consensus 702 a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 702 ALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHhcCCCChhhHHHHHHHH
Confidence 9999999976665555443
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.21 E-value=0.014 Score=53.03 Aligned_cols=108 Identities=17% Similarity=0.081 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNV------EALKVVMQGNMRRGRNKEALEFVKRLIDIEPN----E------VEWKLLQALCY 191 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~----~------~~a~~~lA~~~ 191 (235)
.++++.+.|+.+++.-.++. ..+..||.++.+.+++++|+-+..++.++--. + .-..+.+++.|
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 36888999999988633322 46788999999999999999999999987533 1 23456689999
Q ss_pred HHcCCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHhhchhhcccC
Q 026642 192 ELMGKLSTAKRLFKDILKERP--LL----LRALHDLGRYVSMTLQIQSLF 235 (235)
Q Consensus 192 ~~~g~~~~A~~~l~kaL~~~P--~~----~~a~~~l~~~~~~~~~~~~~f 235 (235)
..+|+...|.++.+++.++.- .| .+-+.-++.+|..++|.+..|
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 999999999999999876542 22 666778888999998877655
No 256
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.18 E-value=0.0012 Score=58.95 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=58.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642 155 QGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL 218 (235)
Q Consensus 155 ~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~ 218 (235)
.-.+..|++++|++.+.++|+++|.....+..+|.++..+++...|++.|..+++++|+...-|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y 185 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY 185 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc
Confidence 3345678999999999999999999999999999999999999999999999999999985443
No 257
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.16 E-value=0.0068 Score=51.75 Aligned_cols=57 Identities=12% Similarity=0.196 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE 182 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~ 182 (235)
..+.+.|.+.|.++++.-|.....|..+|....+.|+++.|.+.|+++++++|++-.
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 445678899999999999999999999999999999999999999999999998754
No 258
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.15 E-value=0.051 Score=52.28 Aligned_cols=99 Identities=12% Similarity=0.030 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026642 126 LMGKSEVEEMFEKLLE-----KEPRNVEALKVVMQGNMRRG-----RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG 195 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~-----~~P~~~~a~~~la~~~~~~g-----~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g 195 (235)
.++.+.|+.+|+.+++ ..-.++.+...+|.+|.+.. +++.|+.+|.++.+++ ++++.+.+|+++....
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence 3456777877777766 11125667888888888843 6778888888888775 6777778888877766
Q ss_pred ---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 196 ---KLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 196 ---~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
++.+|.++|..+.+.- ++.++++++.+|...
T Consensus 340 ~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKAG--HILAIYRLALCYELG 373 (552)
T ss_pred ccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhC
Confidence 5678888888886554 788888888887654
No 259
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.05 E-value=0.074 Score=52.92 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD 206 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k 206 (235)
+..++|..+++..-...++|...+..+-.+|-++|++++|..+|++++..+|+ .+....+=.+|.+.++|.+-.+.--+
T Consensus 57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~ 135 (932)
T KOG2053|consen 57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQ 135 (932)
T ss_pred cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888887777778889999999999999999999999999999999999 77777888889999999887777777
Q ss_pred HHHHCCCCHHHHHHHHHHHh
Q 026642 207 ILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~~ 226 (235)
..+.-|++...+....-++.
T Consensus 136 LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 136 LYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHhCCcccchHHHHHHHHH
Confidence 77888988665555444433
No 260
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=0.055 Score=50.71 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
++..|..+|+++|.-|-.+...|...+..-++.+....|-..+++++.+=|.-...|+..-.+-..+|+...|.+.|++=
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999998988888888888888889999999999998
Q ss_pred HHHCCCC
Q 026642 208 LKERPLL 214 (235)
Q Consensus 208 L~~~P~~ 214 (235)
++..|+.
T Consensus 168 ~~w~P~e 174 (677)
T KOG1915|consen 168 MEWEPDE 174 (677)
T ss_pred HcCCCcH
Confidence 8888874
No 261
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.99 E-value=0.013 Score=53.86 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHcC
Q 026642 128 GKSEVEEMFEKLLEKEP------RNVEALKVVMQGNMRRGRNKEALEFVKRLIDI----EPN--EVEWKLLQALCYELMG 195 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P------~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l----~P~--~~~a~~~lA~~~~~~g 195 (235)
+++.|+..-+.-|++.. ..-.|+.++|..++-.|+++.|+++|++.+.+ .-. .++..+.+|..|....
T Consensus 210 df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~ 289 (639)
T KOG1130|consen 210 DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLK 289 (639)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHH
Confidence 34667666555554321 12357888999999999999999999887654 333 3455677999999999
Q ss_pred CHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHhhchh
Q 026642 196 KLSTAKRLFKDILKER------PLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 196 ~~~~A~~~l~kaL~~~------P~~~~a~~~l~~~~~~~~~ 230 (235)
++++|+.+.++-|+.. -...++++.||..+...+.
T Consensus 290 e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 290 EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 9999999998866532 2237888888888776554
No 262
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.95 E-value=0.066 Score=45.28 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHh----C-CC--CHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhhCCC------CHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEK----E-PR--NVEALKVVMQGNMRRGRNK-------EALEFVKRLIDIEPN------EVEWKLLQ 187 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~----~-P~--~~~a~~~la~~~~~~g~~~-------eAi~~l~kai~l~P~------~~~a~~~l 187 (235)
.+++|++.|.-++-. + +. -+..+..+|++|-..|+.+ .|++.|+++++.+.. .....+.+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 357788777666532 2 22 2567788899998888844 567777777765432 35778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCH-HHHHHHHH
Q 026642 188 ALCYELMGKLSTAKRLFKDILKERPLLL-RALHDLGR 223 (235)
Q Consensus 188 A~~~~~~g~~~~A~~~l~kaL~~~P~~~-~a~~~l~~ 223 (235)
|.+.+..|++++|++.|.+++...-... ..+.+++.
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999999999999986544332 34444443
No 263
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.86 E-value=0.023 Score=34.08 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLID 175 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~ 175 (235)
.++..+|.+|..+|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3445555555555555555555555554
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.82 E-value=0.054 Score=51.06 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=68.9
Q ss_pred cCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCH---
Q 026642 126 LMGKSEVEEMFEKLLEKEPR----NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKL--- 197 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~----~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~--- 197 (235)
.++.++|++.|+++++.... ..-.+..++..++-+++|++|.+++.++++.+... .-+.+..|.|+...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 45679999999988853221 23457888999999999999999999999987654 45667789999999999
Q ss_pred ----HHHHHHHHHHHHHCC
Q 026642 198 ----STAKRLFKDILKERP 212 (235)
Q Consensus 198 ----~~A~~~l~kaL~~~P 212 (235)
++|.+.|+++-.+-.
T Consensus 360 ~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 888888888765443
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.80 E-value=0.027 Score=33.73 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 181 VEWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 181 ~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
...+.++|.+|..+|++++|.++++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3567899999999999999999999998754
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.78 E-value=0.29 Score=43.23 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-C-------------
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKE----PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI-EP-N------------- 179 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~----P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l-~P-~------------- 179 (235)
+.+.-...+.++-|...+.++...+ ...+......+.+....|+.++|+..++..++. .. .
T Consensus 152 ~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T PF02259_consen 152 FAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGL 231 (352)
T ss_pred HHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcc
Confidence 3344455666788888888887754 225788888999999999999999999998881 11 0
Q ss_pred -------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 180 -------------------EVEWKLLQALCYELM------GKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 180 -------------------~~~a~~~lA~~~~~~------g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
.+.++..+|.-.... ++.+++.+.|+++++.+|+...+|+.+|..+.+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~ 308 (352)
T PF02259_consen 232 LESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES 308 (352)
T ss_pred ccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence 124455566655566 8889999999999999999999999999998776553
No 267
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=95.76 E-value=0.07 Score=45.40 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=42.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642 123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE 180 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~ 180 (235)
..+....++++...++-++.+|.|......+-.+++-.|+|++|...++-+-+++|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344456777777777777777777777777777777777777777777777777765
No 268
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.071 Score=46.50 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=62.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY 191 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~ 191 (235)
....+..++.|....++.+..+|+++..+.-.|.+|.+.|.+..|++.++..++.-|+++.+-..++++.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4444566889999999999999999999999999999999999999999999999999998877777654
No 269
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.68 E-value=0.16 Score=40.54 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
++..+...-...++.+++...++.+--+.|+.++....-|.++...|+|++|+..++.+.+..+..+..---++.++..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 44445555566899999999999999999999999999999999999999999999999888877766655666666655
Q ss_pred hh
Q 026642 229 LQ 230 (235)
Q Consensus 229 ~~ 230 (235)
+|
T Consensus 92 ~D 93 (153)
T TIGR02561 92 GD 93 (153)
T ss_pred CC
Confidence 55
No 270
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.63 E-value=0.055 Score=39.45 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=45.5
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642 157 NMRRGRNKEALEFVKRLIDIEPNE---------VEWKLLQALCYELMGKLSTAKRLFKDILKERPL 213 (235)
Q Consensus 157 ~~~~g~~~eAi~~l~kai~l~P~~---------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~ 213 (235)
..+.|+|.+|++.+.+..+..... ..+...+|.++...|++++|++.+++++.+.-.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 467899999988888887754321 356778999999999999999999999885543
No 271
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.59 E-value=0.048 Score=51.63 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR---GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~---g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
...|+..|.+++..-|.....+...+.++++. |+--.|+.....++++||....+|+.++.++...+++.+|+++..
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 46789999999999999999999999999885 566678888999999999999999999999999999999999998
Q ss_pred HHHHHCCCC
Q 026642 206 DILKERPLL 214 (235)
Q Consensus 206 kaL~~~P~~ 214 (235)
.+....|.+
T Consensus 470 alq~~~Ptd 478 (758)
T KOG1310|consen 470 ALQMSFPTD 478 (758)
T ss_pred HHhhcCchh
Confidence 888888855
No 272
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.53 E-value=0.02 Score=53.67 Aligned_cols=106 Identities=14% Similarity=0.057 Sum_probs=82.8
Q ss_pred cCCHHHHHHHHHH-HHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------hCC---------
Q 026642 126 LMGKSEVEEMFEK-LLEKEPR--------NVEALKVVMQGNMRRGRNKEALEFVKRLID---------IEP--------- 178 (235)
Q Consensus 126 ~~~~~eA~~~~e~-aL~~~P~--------~~~a~~~la~~~~~~g~~~eAi~~l~kai~---------l~P--------- 178 (235)
.+++.+|.+.+.. -++..|. .--.|.++|.++++.|.|.-++.+|.++++ +.|
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 3455666655433 2223333 223578999999999999999999999996 112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 179 NEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 179 ~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
..-+..++.|..|...|+.-.|.++|.++.+..-.+++.|..++.++....++
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~ 385 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQK 385 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 13577889999999999999999999999999999999999999998776553
No 273
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.50 E-value=0.32 Score=44.58 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHHHHHHHH
Q 026642 118 NLKEKRDALMGKSEVEEMFEKLLEK----EPRNVEALKVVMQGNMR---RGRNKEALEFVKR-LIDIEPNEVEWKLLQAL 189 (235)
Q Consensus 118 ~~~e~~~~~~~~~eA~~~~e~aL~~----~P~~~~a~~~la~~~~~---~g~~~eAi~~l~k-ai~l~P~~~~a~~~lA~ 189 (235)
.+.-...+.++|+.-++..+..-.. -++.......+|.++.+ .|+.++|++.+.. +...++.+++.+...|.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455566688877777765554 45566777788888888 9999999999999 55566778999999999
Q ss_pred HHHHc---------CCHHHHHHHHHHHHHHCCCC
Q 026642 190 CYELM---------GKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 190 ~~~~~---------g~~~~A~~~l~kaL~~~P~~ 214 (235)
+|-.+ ...++|+..|.++.+.+|+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 87542 23689999999999999765
No 274
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.42 E-value=0.36 Score=41.89 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642 165 EALEFVKRLIDIEPNEVEWKLLQALCYELM-G---KLSTAKRLFKDILKERPLLLRALHDLG 222 (235)
Q Consensus 165 eAi~~l~kai~l~P~~~~a~~~lA~~~~~~-g---~~~~A~~~l~kaL~~~P~~~~a~~~l~ 222 (235)
.|+..|.++-+.. ++.+.+.+|.+|..- | ++++|...|.++-+... ..+.+.++
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 4444444444443 444444445444332 2 34455555555544443 44444444
No 275
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.40 E-value=0.32 Score=43.53 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHc--CCHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC-YELM--GKLSTAKRLFK 205 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~-~~~~--g~~~~A~~~l~ 205 (235)
.+..+.+|++||+.+|++...+..+.....+..+-++..+-+++++..+|++...|..+-.. .... -.+++..+.|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999998877764433 3322 34677777777
Q ss_pred HHHH
Q 026642 206 DILK 209 (235)
Q Consensus 206 kaL~ 209 (235)
++|.
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 7765
No 276
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.36 E-value=0.034 Score=49.56 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=72.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642 135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLL-QALCYELMGKLSTAKRLFKDILKERPL 213 (235)
Q Consensus 135 ~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~-lA~~~~~~g~~~~A~~~l~kaL~~~P~ 213 (235)
.|.+....-++|+..|...+.-..+.|-|.+--..+.+++..+|.+++.|.. -+.=+...++.+.+...|.+.|..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445556678899999998888888888999999999999999999998886 455678889999999999999999999
Q ss_pred CHHHHHHHH
Q 026642 214 LLRALHDLG 222 (235)
Q Consensus 214 ~~~a~~~l~ 222 (235)
++..|.+..
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 977775443
No 277
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.18 E-value=0.073 Score=31.98 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 026642 148 EALKVVMQGNMRRGRNKEALEF--VKRLIDIEPN 179 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~--l~kai~l~P~ 179 (235)
+.|..+|..+..+|++++|++. |.-+..++++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455555555555555555555 3355555443
No 278
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.26 Score=42.39 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=69.0
Q ss_pred hHHHHHHHHh--cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-H----
Q 026642 116 SENLKEKRDA--LMGKSEVEEMFEKLLEKEPR------NVEALKVVMQGNMRR-GRNKEALEFVKRLIDIEPNE-V---- 181 (235)
Q Consensus 116 ~~~~~e~~~~--~~~~~eA~~~~e~aL~~~P~------~~~a~~~la~~~~~~-g~~~eAi~~l~kai~l~P~~-~---- 181 (235)
+..|.+..+. ..+.++|++++++++++.-+ -+..+..+|.+|-.. .+++.||.+|+++-+....+ .
T Consensus 74 at~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 74 ATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 3445444432 33568888888888876433 223455788888766 88999999999998865443 2
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 182 -EWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 182 -~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
.-++..|..-...|+|.+|++.|+++....-+|
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 223345666777899999999999998877777
No 279
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.13 E-value=0.24 Score=50.42 Aligned_cols=87 Identities=17% Similarity=0.074 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642 128 GKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRR----G---RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL 197 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~----g---~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~ 197 (235)
.|++|+..|++..+--|.- -||...+|...+.+ | .+++|+..++++-. .|.-|--|..+|.+|..+|+|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 568 (932)
T PRK13184 490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEY 568 (932)
T ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhH
Confidence 3899999999999887754 46777788877653 3 47788888888644 356677788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCH
Q 026642 198 STAKRLFKDILKERPLLL 215 (235)
Q Consensus 198 ~~A~~~l~kaL~~~P~~~ 215 (235)
++-++.|.-+++.+|+++
T Consensus 569 ~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 569 NEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999999999999994
No 280
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.10 E-value=0.081 Score=41.62 Aligned_cols=64 Identities=25% Similarity=0.340 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLE-KEPR-NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE 192 (235)
Q Consensus 129 ~~eA~~~~e~aL~-~~P~-~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~ 192 (235)
..+.+.+++..++ ..|. .-+..+.|+..+.+.|+|+.++.+++.+++.+|+|.++.-+.-.+.-
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied 116 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIED 116 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 4678899999997 4443 45788899999999999999999999999999999999877665543
No 281
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.36 Score=41.52 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHc
Q 026642 128 GKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-------EWKLLQALCYELM 194 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-------~a~~~lA~~~~~~ 194 (235)
++++|+..|+++.+-...+ -..+...+....+.++|.+|++.|+++.+..-++. ++.+.-|.|+...
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 4688999999988753322 13455566677788999999999999998776654 3344568899999
Q ss_pred CCHHHHHHHHHHHHHHCCCCH
Q 026642 195 GKLSTAKRLFKDILKERPLLL 215 (235)
Q Consensus 195 g~~~~A~~~l~kaL~~~P~~~ 215 (235)
+|.-.+...+++..+++|...
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999883
No 282
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.04 E-value=0.66 Score=40.22 Aligned_cols=103 Identities=15% Similarity=-0.006 Sum_probs=80.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMG- 195 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g- 195 (235)
......+..+|..+|+.+. +..++.+...||.+|.. ..+..+|..+|+++.+..-.. ..+.+.+|.+|..-+
T Consensus 86 g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~ 163 (292)
T COG0790 86 GKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQ 163 (292)
T ss_pred ccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChh
Confidence 3333445788999999544 45788999999999988 789999999999999986433 344888888887752
Q ss_pred ------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 196 ------KLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 196 ------~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
+...|...|.++-... +..+.+.+|.+|...
T Consensus 164 ~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 164 ALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred hhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 2337999999998777 788888888877654
No 283
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.29 Score=46.90 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhhCCCCHHHHHHH------HHHHHHcCCHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVK-RLIDIEPNEVEWKLLQ------ALCYELMGKLSTAK 201 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~-kai~l~P~~~~a~~~l------A~~~~~~g~~~~A~ 201 (235)
...+...+..++..||++..+...|+......|....++..+. .+....|++.+....+ +.....+|+.+++.
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (620)
T COG3914 83 STLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAE 162 (620)
T ss_pred chhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHH
Confidence 3577888889999999999999999999888877666555554 4889999998887777 88899999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Q 026642 202 RLFKDILKERPLLLRALHDLGRY 224 (235)
Q Consensus 202 ~~l~kaL~~~P~~~~a~~~l~~~ 224 (235)
...+++....|.+.++..++...
T Consensus 163 ~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 163 LALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHhhhhhhhhHhHHHHH
Confidence 99999999999997777666554
No 284
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.65 Score=40.64 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR-GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS-TAKRLFKD 206 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~-g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~-~A~~~l~k 206 (235)
.+.|.+.-+.++..+|.+-.+|...-.++-.. .+..+-+++++++++-+|.+.+.|..+-.+....|++. .-.+..+.
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 37788888889999999998888776665554 46788889999999999999999888888888888887 77888888
Q ss_pred HHHHCCCCHHHHHHHHHHHh
Q 026642 207 ILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 207 aL~~~P~~~~a~~~l~~~~~ 226 (235)
++..|.+|-.+|...--+..
T Consensus 139 ~l~~DaKNYHaWshRqW~~r 158 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLR 158 (318)
T ss_pred HHhccccchhhhHHHHHHHH
Confidence 99988888777655444433
No 285
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.90 E-value=0.46 Score=43.32 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=65.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------C------------CCCH---HHHH
Q 026642 135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI--------------E------------PNEV---EWKL 185 (235)
Q Consensus 135 ~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l--------------~------------P~~~---~a~~ 185 (235)
.+-..|..+|-.++++..++.++..+|+.+.|.+.+++++-. + ++|- .+.+
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 344556889999999999999999999999999999988632 1 2232 3445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CH
Q 026642 186 LQALCYELMGKLSTAKRLFKDILKERPL-LL 215 (235)
Q Consensus 186 ~lA~~~~~~g~~~~A~~~l~kaL~~~P~-~~ 215 (235)
.....+...|-+..|.+..+-++.+||. |+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 5678899999999999999999999999 64
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.84 E-value=0.67 Score=37.90 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C------HH
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPL--L------LR 216 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~--~------~~ 216 (235)
.++..+|.-|.+.|++++|+++|.++.+..... .+.++.+.++....|++......++++-..--. + ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 678899999999999999999999988765432 467778888999999999999988887553322 2 45
Q ss_pred HHHHHHHHHhhchh
Q 026642 217 ALHDLGRYVSMTLQ 230 (235)
Q Consensus 217 a~~~l~~~~~~~~~ 230 (235)
++.++..+..+...
T Consensus 117 ~~~gL~~l~~r~f~ 130 (177)
T PF10602_consen 117 VYEGLANLAQRDFK 130 (177)
T ss_pred HHHHHHHHHhchHH
Confidence 66666666665544
No 287
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.82 E-value=0.49 Score=43.60 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKR 172 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~k 172 (235)
+..+.|+.+-+.+-+.-|.-+-++.......+..|+|++|++.++.
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3445566666666677777777777777777778888888777643
No 288
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.82 E-value=0.099 Score=44.87 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642 132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL 193 (235)
Q Consensus 132 A~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~ 193 (235)
|++.|.+|+...|++...+..+|.++...|+.=+|+-+|-|++-..-..+.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888876655557777777777666
No 289
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.77 E-value=0.44 Score=44.57 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=51.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642 158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL 229 (235)
Q Consensus 158 ~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~ 229 (235)
+.+|+|.+++-+-.-+.+.+| .+.++..+|.|+++..+|++|-.++.++-. +-+--.+....+++..+++
T Consensus 473 ysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKALALCQKH 542 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHh
Confidence 347999999999999999999 899999999999999999999998865422 1111333344445544444
No 290
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.19 Score=45.40 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=44.3
Q ss_pred HHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 133 EEMFEKLLEK-EPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 133 ~~~~e~aL~~-~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
...+++++-. +++- ....-.++-.+...|-|++|++..++++++|+.+..+.-.+|.++...|++.++++.+.+-
T Consensus 157 k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 157 KNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 3445555544 4443 2223333445566677777777777777777776666666666666666666666666554
No 291
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.73 E-value=0.13 Score=30.95 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHHCCCC
Q 026642 181 VEWKLLQALCYELMGKLSTAKRL--FKDILKERPLL 214 (235)
Q Consensus 181 ~~a~~~lA~~~~~~g~~~~A~~~--l~kaL~~~P~~ 214 (235)
++.+..+|..++.+|++++|++. |+-+..+++.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35788899999999999999999 55888888764
No 292
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.58 E-value=0.33 Score=36.73 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=63.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNVE---ALKVVMQGNMRRG-----------RNKEALEFVKRLIDIEPNEVEWKLLQALC 190 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~~---a~~~la~~~~~~g-----------~~~eAi~~l~kai~l~P~~~~a~~~lA~~ 190 (235)
..++.-+|.++.+..+..+.++.. .+..-|.++.++. ..-.+++++.+++.+.|+.+...+.+|.=
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 345588999999999888777764 4444566664432 23468999999999999998888888887
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 026642 191 YELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 191 ~~~~g~~~~A~~~l~kaL~~ 210 (235)
+.....|+++....+++|..
T Consensus 88 l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 88 LGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhhHHHHHHHHHHHHHHhcc
Confidence 77777788888887777653
No 293
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.54 E-value=0.23 Score=48.24 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=72.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642 139 LLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID-IEPNE-----VEWKLLQALCYELMGKLSTAKRLFKDILKERP 212 (235)
Q Consensus 139 aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~-l~P~~-----~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P 212 (235)
+|.+||++.+-|.....+ ..|+..+-+..|.+|++ .||.- ...|..+|..|...|+.+.|...|+++++..=
T Consensus 341 lLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 456799999999877655 57888999999999986 56643 36788999999999999999999999998654
Q ss_pred CC----HHHHHHHHHHHhhchhhc
Q 026642 213 LL----LRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 213 ~~----~~a~~~l~~~~~~~~~~~ 232 (235)
.. ..+|.+.|.+-.++.+.+
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~ 442 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFE 442 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHH
Confidence 33 677788776655555433
No 294
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.11 E-value=0.067 Score=29.44 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 026642 183 WKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 183 a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666666666666665554
No 295
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.09 E-value=0.96 Score=43.54 Aligned_cols=93 Identities=19% Similarity=0.154 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG---RNKEALEFVKRLIDIEPNEVEWKLLQALCYELM----GKLSTA 200 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g---~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~----g~~~~A 200 (235)
+++.|...|.++.+. .++++.+.+|.++.... ++..|.++|..|.+. .+..+.+.+|.||..- .+.++|
T Consensus 308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 567899999888776 56788999999988766 678999999999875 4889999999988765 468899
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642 201 KRLFKDILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 201 ~~~l~kaL~~~P~~~~a~~~l~~~~~ 226 (235)
..+|.++.+.. ++.+.+.++..+.
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYE 407 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHH
Confidence 99999999888 5555555554443
No 296
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=94.08 E-value=0.35 Score=38.24 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
...+.....+...+..|++.-|.+..+.++..+|++.+++..++.+|..+|.-.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 567888888999999999999999999999999999999999999998877644
No 297
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=1.3 Score=40.95 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCC---HHHHHHHHHHH
Q 026642 134 EMFEKLLEKEPRNVEALKVVMQGNMRRGR--NKEALEFVKRLIDIEPNEVEWKLLQALCYEL-MGK---LSTAKRLFKDI 207 (235)
Q Consensus 134 ~~~e~aL~~~P~~~~a~~~la~~~~~~g~--~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~-~g~---~~~A~~~l~ka 207 (235)
...+.+|+.+|++-.+|.-+..++.+++. +..=++..+++++.||.+-.+|..+=-++.. ... ..+-++..+++
T Consensus 96 ~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~ 175 (421)
T KOG0529|consen 96 KYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKL 175 (421)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHH
Confidence 34444455555555555555555544432 3444445555555555444333322222111 111 33344444445
Q ss_pred HHHCCCCHHHHHHHHHHHh
Q 026642 208 LKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 208 L~~~P~~~~a~~~l~~~~~ 226 (235)
+..++.|..+|+....+..
T Consensus 176 I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 176 INDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HhccchhhhHHHHHHHHHH
Confidence 5445555555544444443
No 298
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=1 Score=39.10 Aligned_cols=89 Identities=12% Similarity=0.024 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHc
Q 026642 126 LMGKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMRRGRNKEALEFVKRLIDIE-----PNEVEWKLLQALCYELM 194 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-----P~~~~a~~~lA~~~~~~ 194 (235)
...+++|...+.++.+-..+| +.++...+.+.-+..++.|+.++|+++..+. |+-+-.-..+|-=....
T Consensus 44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len 123 (308)
T KOG1585|consen 44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN 123 (308)
T ss_pred hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Confidence 445788888888888654443 3456666777777888999999999998864 34444445556566778
Q ss_pred CCHHHHHHHHHHHHHHCCCC
Q 026642 195 GKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 195 g~~~~A~~~l~kaL~~~P~~ 214 (235)
-+.++|+..|++++..--.+
T Consensus 124 v~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEED 143 (308)
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 88999999999887654433
No 299
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.64 E-value=0.44 Score=36.10 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=58.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCCCCHHHH
Q 026642 153 VMQGNMRRGRNKEALEFVKRLIDIEPNEVE---WKLLQALCYELMGK-----------LSTAKRLFKDILKERPLLLRAL 218 (235)
Q Consensus 153 la~~~~~~g~~~eAi~~l~kai~l~P~~~~---a~~~lA~~~~~~g~-----------~~~A~~~l~kaL~~~P~~~~a~ 218 (235)
++.-+++.|++-+|++..+..+...+++.. .+..-|.+++.++. .-.+++.|.++..+.|+.+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 567889999999999999999999988764 34445766655543 2368999999999999999888
Q ss_pred HHHHHH
Q 026642 219 HDLGRY 224 (235)
Q Consensus 219 ~~l~~~ 224 (235)
+.+|.-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 888865
No 300
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.61 E-value=1.3 Score=40.19 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=62.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------------CCC
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE-----------------------PNE 180 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-----------------------P~~ 180 (235)
=.+.+..+-++...++|++||+.+.++..|+.--.. -.-+|++.++++++.. ..+
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtn 272 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTN 272 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccc
Confidence 334455677888899999999999999988874322 2234444444444321 112
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 181 V--EWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 181 ~--~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
+ .....+|+|...+|+..+|++.++.+.+..|-.
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~ 308 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL 308 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH
Confidence 3 334468999999999999999999998888844
No 301
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.49 E-value=0.15 Score=32.11 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 184 KLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 184 ~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
.+.+|.+|..+|+++.|.+.+++++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 467899999999999999999999953
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.25 E-value=0.8 Score=38.38 Aligned_cols=70 Identities=16% Similarity=0.069 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHhhchhhcc
Q 026642 163 NKEALEFVKRLIDIE-PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL----LRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 163 ~~eAi~~l~kai~l~-P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~----~~a~~~l~~~~~~~~~~~~ 233 (235)
-++|...+-++-... =++++..+.+|..| ...|.++|+..|.++|++...+ +..+..|+-++++.++.+.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 345555554443221 13566666666644 3677777888887777766544 7777777777777776554
No 303
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.24 E-value=0.46 Score=42.16 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 152 VVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 152 ~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
..+..|...|.+.+|++..++++.+||-+-..+..+..+|..+||-=.|++.|++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34555677788888888888888888888888888888888888877777776665
No 304
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.21 E-value=1 Score=41.54 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNV-EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~-~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
+++++.|.+.|+..+. +|.-- -.+..|-..-.+.|+.+.|..+-+++.+..|.-+.++...-......||++.|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 133 EGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred cCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 5667888888887665 33211 123333333456899999999999999999999998888888889999999999998
Q ss_pred HHHHH
Q 026642 205 KDILK 209 (235)
Q Consensus 205 ~kaL~ 209 (235)
+...+
T Consensus 212 d~~~~ 216 (531)
T COG3898 212 DAQRA 216 (531)
T ss_pred HHHHH
Confidence 76544
No 305
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=93.19 E-value=1.8 Score=41.22 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=47.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCC--HHHHHHHHHHHhh
Q 026642 153 VMQGNMRRGRNKEALEFVKRLI-DIEPNE-VEWKLLQALCYELMGKLSTAKRLFKDILK-ERPLL--LRALHDLGRYVSM 227 (235)
Q Consensus 153 la~~~~~~g~~~eAi~~l~kai-~l~P~~-~~a~~~lA~~~~~~g~~~~A~~~l~kaL~-~~P~~--~~a~~~l~~~~~~ 227 (235)
.+++.++.|+.++|...+.++- .+.+.. .++-...|++.....++..|...+.+... .-|.+ ++.|...+.+...
T Consensus 69 Aa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea 148 (604)
T COG3107 69 AARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALEA 148 (604)
T ss_pred HHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHhc
Confidence 3566677777777777777765 454443 34555667777777777777777766532 22222 5566666666555
Q ss_pred chh
Q 026642 228 TLQ 230 (235)
Q Consensus 228 ~~~ 230 (235)
+++
T Consensus 149 ~~~ 151 (604)
T COG3107 149 RGD 151 (604)
T ss_pred ccc
Confidence 544
No 306
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.14 E-value=0.16 Score=30.89 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642 149 ALKVVMQGNMRRGRNKEALEFVKRLIDI 176 (235)
Q Consensus 149 a~~~la~~~~~~g~~~eAi~~l~kai~l 176 (235)
.+..||.+-+..++|++|++.|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.10 E-value=0.13 Score=28.31 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKR 172 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~k 172 (235)
.+...+|.++..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998763
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=2.4 Score=36.83 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=73.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCC--CCHHHHHHHHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPR------NVEALKVVMQGNMRRGRNKEALEFVKRLID----IEP--NEVEWKLLQALCYE 192 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~------~~~a~~~la~~~~~~g~~~eAi~~l~kai~----l~P--~~~~a~~~lA~~~~ 192 (235)
+....++|++.|+++++.-.+ -.+.+-..++++.+.++++||-..+.+-.. .+. ..-.++...-.+|.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 344579999999998875222 234566778899999999999888776543 232 23344555556777
Q ss_pred HcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHhhc
Q 026642 193 LMGKLSTAKRLFKDILK----ERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 193 ~~g~~~~A~~~l~kaL~----~~P~~~~a~~~l~~~~~~~ 228 (235)
...||..|.++++...+ ..+++.+++.+|...|...
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~g 241 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEG 241 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccC
Confidence 77899999999998765 3455588888887777543
No 309
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.99 E-value=0.48 Score=40.55 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642 166 ALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM 227 (235)
Q Consensus 166 Ai~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~ 227 (235)
|+.+|.+|+.+.|++...++.+|.++...|+.-.|+-+|-+++...--+..+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999887655558889999988887
No 310
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.85 E-value=1 Score=38.48 Aligned_cols=75 Identities=9% Similarity=0.044 Sum_probs=67.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhch
Q 026642 155 QGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHDLGRYVSMTL 229 (235)
Q Consensus 155 ~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~l~~~~~~~~ 229 (235)
..+++.+..++|+...+.-++.+|.+...+..+-.+|.-.|+|++|...++-+-.++|++ +..|.++..+...+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~ 86 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARN 86 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999 677788877766554
No 311
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.80 E-value=0.62 Score=41.01 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=48.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642 122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI 176 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l 176 (235)
..-..+..+.+++.+++.++.+|.+-.+|..+...|.+.|+...|+..|+++-+.
T Consensus 162 ~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 162 ALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3333445688899999999999999999999999999999999999999998775
No 312
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=1.7 Score=40.09 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642 162 RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK--LSTAKRLFKDILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 162 ~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~--~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~ 226 (235)
-.++-+.+.+.+++.+|+...+|+.+..++...+. +..-.+..+++++.||.|..+|...=.++.
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 56788999999999999999999999999998865 588999999999999999777754444433
No 313
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.64 E-value=2.6 Score=41.17 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=86.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPR----NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--------------- 179 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~----~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--------------- 179 (235)
+..-....++.+.|...|+++++-+=. -+..|...|..-++..+++.|.+.++++.-.--.
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 444444556788999999999886422 3568888888888899999999999888764211
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcccC
Q 026642 180 ---EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF 235 (235)
Q Consensus 180 ---~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~~f 235 (235)
....|..++......|-++.-+..|++++.+.--.+....|.|+.+....-.++.|
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 23456667888888888888999999999888777888888888877665544443
No 314
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.47 E-value=1.5 Score=31.20 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=31.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH---HHHHHHHcCCHHHHHHHH
Q 026642 154 MQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLL---QALCYELMGKLSTAKRLF 204 (235)
Q Consensus 154 a~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~---lA~~~~~~g~~~~A~~~l 204 (235)
|.-++.+++.++|+..++++++..++..+-+.. ++.+|...|+|.++++..
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446667777777777777776665544433 345667777776665554
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.20 E-value=4.2 Score=35.43 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcC-CHHHHHHHHHHHHhh----CC---CC-------HHH
Q 026642 127 MGKSEVEEMFEKLLEKE-PRNV-------EALKVVMQGNMRRG-RNKEALEFVKRLIDI----EP---NE-------VEW 183 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~-P~~~-------~a~~~la~~~~~~g-~~~eAi~~l~kai~l----~P---~~-------~~a 183 (235)
++.+.|+.++.++-... .-++ +.++..|......+ ++++|+.+++++.++ .. .. ...
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 34566666666654432 2222 33444555556677 888888888888776 21 11 123
Q ss_pred HHHHHHHHHHcCCHH---HHHHHHHHHHHHCCCCHHHH
Q 026642 184 KLLQALCYELMGKLS---TAKRLFKDILKERPLLLRAL 218 (235)
Q Consensus 184 ~~~lA~~~~~~g~~~---~A~~~l~kaL~~~P~~~~a~ 218 (235)
...++.+|...+.++ +|...++.+-...|+.+..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 344677777766654 45555556666667665555
No 316
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.16 E-value=0.29 Score=29.79 Aligned_cols=30 Identities=10% Similarity=-0.084 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 182 EWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
+.+..+|.+-...++|++|+..|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999864
No 317
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=2.2 Score=41.67 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNV------EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR 202 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~ 202 (235)
|..++++|+.-+..-|.|. .....++.+|....+.|.|.+++++|-+.||.++--....-.+....|.-++|..
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~ 449 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALT 449 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHH
Confidence 4445555555554433332 2334444455555555555555555555555555555554445555555555555
Q ss_pred HHHHHH
Q 026642 203 LFKDIL 208 (235)
Q Consensus 203 ~l~kaL 208 (235)
...++.
T Consensus 450 ~~~~~~ 455 (872)
T KOG4814|consen 450 CLQKIK 455 (872)
T ss_pred HHHHHH
Confidence 554443
No 318
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.63 E-value=1.5 Score=41.31 Aligned_cols=93 Identities=15% Similarity=0.012 Sum_probs=74.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 135 ~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
.+++-++.||+|+-.|+.|..-+-.+|.+++-.+.|++...-.|-.+.+|...-.--....||..-...|-++|...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 5667788999999999999999999999999999999999999999888887666666678888888888888875533
Q ss_pred HHHHHHHHHHHhhch
Q 026642 215 LRALHDLGRYVSMTL 229 (235)
Q Consensus 215 ~~a~~~l~~~~~~~~ 229 (235)
. -+..+-+.|.++.
T Consensus 109 l-dLW~lYl~YIRr~ 122 (660)
T COG5107 109 L-DLWMLYLEYIRRV 122 (660)
T ss_pred H-hHHHHHHHHHHhh
Confidence 2 2334444454443
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.44 E-value=2.3 Score=40.42 Aligned_cols=96 Identities=8% Similarity=-0.101 Sum_probs=72.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
..++.-+.++...|-+.+..+|...|.+++.-...+.+....|+|++|+..+..+-..-..-..+...+-+-+..+|+++
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 34455556778888888999999999999999999999999999999988876655544444455555566677777787
Q ss_pred HHHHHHHHHHHHCCCC
Q 026642 199 TAKRLFKDILKERPLL 214 (235)
Q Consensus 199 ~A~~~l~kaL~~~P~~ 214 (235)
+|....+-.|..+-.+
T Consensus 375 ~a~s~a~~~l~~eie~ 390 (831)
T PRK15180 375 EALSTAEMMLSNEIED 390 (831)
T ss_pred HHHHHHHHHhccccCC
Confidence 7777777766655444
No 320
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.19 E-value=1.2 Score=31.64 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhh
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQ---GNMRRGRNKEALEFVKRLIDI 176 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~---~~~~~g~~~eAi~~l~kai~l 176 (235)
..+.++|+..++++|+..++..+.+..||. +|...|+|++++++..+-+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334689999999999999998888887776 467899999999887666654
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.07 E-value=1.6 Score=36.91 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPR------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-EWKLLQAL 189 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-~a~~~lA~ 189 (235)
+.+|.+.|+++.+.+.. .....+.+|.++.+.|++++|++++.+++...-... .....+|+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 47899999999986533 356788899999999999999999999998654333 34445554
No 322
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.94 E-value=1.1 Score=32.55 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026642 126 LMGKSEVEEMFEKLLEK----EPRN-----VEALKVVMQGNMRRGRNKEALEFVKRLIDIEP 178 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~----~P~~-----~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P 178 (235)
.+++.+|.+.+.+.... +... ..++..++.++...|++++|++.+++++++-.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45577776666665543 2222 46788899999999999999999999998653
No 323
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.77 E-value=0.48 Score=43.81 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIE---------PNEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~---------P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
...|.+++.-.|+|..|++.++-+ +++ +-....++..|-+|..+++|.+|++.|..+|-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999998763 222 22467788999999999999999999998864
No 324
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.64 E-value=1.3 Score=36.21 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=66.8
Q ss_pred hcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHHHcC
Q 026642 125 ALMGKSEVEEMFEKLLEKEP---RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--EVE----WKLLQALCYELMG 195 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P---~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--~~~----a~~~lA~~~~~~g 195 (235)
..++.++|.+.|.++.+..- .-.+.+..+.++.+..|+|..+..+++++-.+-.. +.+ .....|..+...|
T Consensus 48 ~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r 127 (177)
T PF10602_consen 48 KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQR 127 (177)
T ss_pred HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhc
Confidence 34558999999999877532 34578889999999999999999999998876433 222 2334578888899
Q ss_pred CHHHHHHHHHHHHHHCC
Q 026642 196 KLSTAKRLFKDILKERP 212 (235)
Q Consensus 196 ~~~~A~~~l~kaL~~~P 212 (235)
+|.+|.+.|-.++.-..
T Consensus 128 ~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 128 DFKEAAELFLDSLSTFT 144 (177)
T ss_pred hHHHHHHHHHccCcCCC
Confidence 99999999987765543
No 325
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.61 E-value=5.8 Score=29.71 Aligned_cols=37 Identities=8% Similarity=-0.060 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE 182 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~ 182 (235)
-+-++..||.+|...|+-|.|.+.++.--.+.|+...
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 3455666666666777766776666666666666543
No 326
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=90.49 E-value=1.1 Score=36.79 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 163 NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 163 ~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
.+..++..++.++..|+ +..+..++.++...|+.++|.+.++++....|.+
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 34566777888888874 8888889999999999999999999999999943
No 327
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=2.6 Score=36.94 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNK-EALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~-eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
..+-.+.+.++++.+|+|-..|.-.-.+.-..|+.. .-++..++++..|..+..+|..+--+...-++|+.-.++..++
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456678888888899999999988888887888777 7788888888888888888888888888888888888888888
Q ss_pred HHHCCCCHHHH
Q 026642 208 LKERPLLLRAL 218 (235)
Q Consensus 208 L~~~P~~~~a~ 218 (235)
|+.|-.|-.||
T Consensus 174 le~Di~NNSAW 184 (318)
T KOG0530|consen 174 LEEDIRNNSAW 184 (318)
T ss_pred HHHhhhccchh
Confidence 87776665554
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.47 E-value=2.2 Score=42.96 Aligned_cols=86 Identities=22% Similarity=0.160 Sum_probs=62.3
Q ss_pred HHHhcCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Q 026642 122 KRDALMGKSEVEEMFEKL----------LEKEPR----------NVEALKVVMQGNMRRGRNKEALEFVKRLIDI----- 176 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~a----------L~~~P~----------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l----- 176 (235)
......+.+.|++.|+++ |..+|. |...|.-.|....-.|+.|.|+.+|..+-+.
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~Vr 946 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVR 946 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhhee
Confidence 334444556677766642 344554 4455666677777799999999999877543
Q ss_pred ----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 177 ----------------EPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 177 ----------------~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+..|.-+-+.+|+.|...|++.+|+..|.++
T Consensus 947 I~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3446778889999999999999999999876
No 329
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.45 E-value=0.51 Score=42.31 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642 117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKV-VMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQ 187 (235)
Q Consensus 117 ~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~-la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~l 187 (235)
..+..-......+.+--..|.+++..+|.|++.|.. -+.-+...++.+.+...+.++++.+|+.+..|+..
T Consensus 111 ~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 111 SQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 334443333345677788999999999999999998 67778899999999999999999999999888764
No 330
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.20 E-value=4.1 Score=31.60 Aligned_cols=84 Identities=8% Similarity=0.048 Sum_probs=55.6
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 026642 149 ALKVV--MQGNMRRGRNKEALEFVKRLIDIEPN------------EVEWKLLQALCYELMGKLSTAKRLFKDILK----- 209 (235)
Q Consensus 149 a~~~l--a~~~~~~g~~~eAi~~l~kai~l~P~------------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~----- 209 (235)
+|..| |.-.++.|-|++|..-+.++++..-. +.-.+..|+.++..+|+|+++....+++|.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 44444 34456789999999999999986422 334556688899999999988877777765
Q ss_pred --HCCCC----HHHHHHHHHHHhhchhhc
Q 026642 210 --ERPLL----LRALHDLGRYVSMTLQIQ 232 (235)
Q Consensus 210 --~~P~~----~~a~~~l~~~~~~~~~~~ 232 (235)
++-+. +.+.++.+..+...+...
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~ 117 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKE 117 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChH
Confidence 34333 555566776666655543
No 331
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.65 E-value=8.4 Score=37.17 Aligned_cols=106 Identities=21% Similarity=0.085 Sum_probs=87.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE-PNEVEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-P~~~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
.+.++...-.|++++..=..-.+.|...+.-....|+-+-|...+.++.+.. |..+..++.-|..-...|+++.|+..|
T Consensus 310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~l 389 (577)
T KOG1258|consen 310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVIL 389 (577)
T ss_pred cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHH
Confidence 4456777888888887767778999999999999999999999999998865 566888888999999999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 205 KDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
+++.+..|+.+.+-...+-+..+++..
T Consensus 390 q~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 390 QRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 999999999976665555555555443
No 332
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.55 E-value=3.6 Score=39.07 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642 118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR-NKEALEFVKRLIDIEPNEVEWKLLQ 187 (235)
Q Consensus 118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~-~~eAi~~l~kai~l~P~~~~a~~~l 187 (235)
.+..-......+.+--..|.++|..+|++++.|...|.-.+.-+. .+.|-..+.++++.+|+.+..|...
T Consensus 110 ~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 110 SYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 333333333346777889999999999999999999887777665 9999999999999999999877653
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.50 E-value=3 Score=37.11 Aligned_cols=51 Identities=22% Similarity=0.038 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 183 WKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
.....+..|...|.+.+|+.+.++++.++|-+...+.++..++...+|..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is 331 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEIS 331 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchh
Confidence 344567889999999999999999999999999999999999999888543
No 334
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=2.5 Score=40.71 Aligned_cols=95 Identities=15% Similarity=-0.068 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 026642 132 VEEMFEKLLEKEPRNVEALKVV--MQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD-IL 208 (235)
Q Consensus 132 A~~~~e~aL~~~P~~~~a~~~l--a~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k-aL 208 (235)
++..+..-+..++.+++.+... ...+...+....+......++..||++..+..++|.+....|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444455788888875444 67777788999999999999999999999999999998888887777766655 88
Q ss_pred HHCCCCHHHHHHHHHHHh
Q 026642 209 KERPLLLRALHDLGRYVS 226 (235)
Q Consensus 209 ~~~P~~~~a~~~l~~~~~ 226 (235)
...|++..++..+.+.|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred hcCcchHHHHhhHHHHHH
Confidence 999999887777755554
No 335
>PF12854 PPR_1: PPR repeat
Probab=89.28 E-value=0.92 Score=26.49 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKR 172 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~k 172 (235)
|...|..+...|.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 466788888888888988888888875
No 336
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.27 E-value=1.3 Score=24.47 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHH
Q 026642 164 KEALEFVKRLIDIEPNEVEWKL 185 (235)
Q Consensus 164 ~eAi~~l~kai~l~P~~~~a~~ 185 (235)
+.|...|+++++..|.++..|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3333444444444443333333
No 337
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.24 E-value=4.7 Score=38.27 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKE-PRNVEA--LKVVMQGNMRRGRNKEALEFVKRLIDIEPN----------EVEWKLLQALCYE 192 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~-P~~~~a--~~~la~~~~~~g~~~eAi~~l~kai~l~P~----------~~~a~~~lA~~~~ 192 (235)
.+.+++|+..|..+++.. ..|..+ -.++|..|++.|+-+.-.+.++. +.|. ....++..|...+
T Consensus 380 v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf 456 (629)
T KOG2300|consen 380 VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAF 456 (629)
T ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 345699999999998863 334443 45678999998876655555554 4444 2356677888889
Q ss_pred HcCCHHHHHHHHHHHHHHC
Q 026642 193 LMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 193 ~~g~~~~A~~~l~kaL~~~ 211 (235)
.++++.||+..+++.|+..
T Consensus 457 ~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 457 KQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HhccHHHHHHHHHHHHhhc
Confidence 9999999999999999877
No 338
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.16 E-value=1.4 Score=24.28 Aligned_cols=31 Identities=13% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 026642 195 GKLSTAKRLFKDILKERPLLLRALHDLGRYV 225 (235)
Q Consensus 195 g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~ 225 (235)
|+.+.|...|++++...|.+...|...+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 6789999999999999999999988776543
No 339
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=88.97 E-value=2.2 Score=34.90 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE 180 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~ 180 (235)
+..++..++.++..| ++..+..++.++..+|+.++|.+..+++..+.|.+
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 556778888888888 68999999999999999999999999999999943
No 340
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=0.33 Score=43.84 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=67.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 151 KVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 151 ~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
..++..-++.+.+..|+..-..+++.+++...+++.+++.+....++++|.+.++.+....|++......+..+..+.
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 346667778899999999999999999999999999999999999999999999999999999977666665554443
No 341
>PF13041 PPR_2: PPR repeat family
Probab=88.72 E-value=1.2 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIE 177 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~ 177 (235)
|...|..+...+.+.|++++|++.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 45678888888888888888888888888753
No 342
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.64 E-value=5.7 Score=36.21 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=77.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC-C----CHHHHHHHHHHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPR-NVEALKVVMQ-GNMRRGRNKEALEFVKRLIDIEP-N----EVEWKLLQALCY 191 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~-~~~a~~~la~-~~~~~g~~~eAi~~l~kai~l~P-~----~~~a~~~lA~~~ 191 (235)
+.+.....+.+..|.+..+-.+..||. |+-+-..... ..++.++|+--++.++....... + -|..-+..|.++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 555666677789999999999999999 8875555444 45678889888888887666311 1 245667788899
Q ss_pred HHcCCH---------------HHHHHHHHHHHHHCCCCHHHHHH
Q 026642 192 ELMGKL---------------STAKRLFKDILKERPLLLRALHD 220 (235)
Q Consensus 192 ~~~g~~---------------~~A~~~l~kaL~~~P~~~~a~~~ 220 (235)
...++- ++|.+.+.+++...|.-...+..
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 999988 89999999999999986554443
No 343
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.23 E-value=4.2 Score=35.74 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP----NEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P----~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
.......|..++.+.-+.|+++.|...+.++...++ ..+.+.+..+.++...|+.++|+..++..++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677899999999999999999999999998663 2578888999999999999999999999988
No 344
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.65 E-value=3.4 Score=40.42 Aligned_cols=66 Identities=11% Similarity=0.116 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLL 215 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~ 215 (235)
+.+-|.-.++..+|..++++|..-++.-|.| ......++.||..+.+.|+|+++++++-+.+|.++
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 3344666788999999999999999877654 34455688999999999999999999999999884
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.20 E-value=1.6 Score=41.03 Aligned_cols=61 Identities=21% Similarity=0.147 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
.-++..-|..||...+++|+++-|+++|+++-+. ..+..+|...|+.++-.+..+.+.+..
T Consensus 343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF--------SGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------HHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------cccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 4468889999999999999999999999986332 245555666666655555555544433
No 346
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.06 E-value=2.8 Score=39.80 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM 194 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~ 194 (235)
+.-+.+++.|..|...|+.-+|.+|+.+++.....+|..|..+|.|-+..
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999886543
No 347
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.04 E-value=1.7 Score=39.89 Aligned_cols=65 Identities=8% Similarity=-0.039 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642 149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMGKLSTAKRLFKDILKERPL 213 (235)
Q Consensus 149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~ 213 (235)
+...++..+.-.+.++++++.|+++++...++ -+.+..+|.++....|+++|.-...+++++--.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 33444555555555555555555555543221 133444555555555555555555555555433
No 348
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.77 E-value=1.5 Score=42.04 Aligned_cols=72 Identities=18% Similarity=0.104 Sum_probs=60.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 159 RRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM---GKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 159 ~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~---g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
..+....|+..|.+++...|.....+.++|.++... |+--.|+.....++.++|-...+|+.++.++.....
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 345567899999999999999999999999888775 566678888889999999999999999988776543
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.76 E-value=8.1 Score=32.43 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 026642 130 SEVEEMFEKLLEK-EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN----EVEWKLLQALCYELMGKLSTAK 201 (235)
Q Consensus 130 ~eA~~~~e~aL~~-~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~----~~~a~~~lA~~~~~~g~~~~A~ 201 (235)
++|.+.|-++-.. .=++++....||-.|. ..+.+.|+..|-+++++... ++++...+|.+|+.+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5566655543221 2367888888887777 78899999999999998655 4899999999999999999884
No 350
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.67 E-value=4 Score=28.69 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=21.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHc
Q 026642 153 VMQGNMRRGRNKEALEFVKRLID-------IEPNEVEWKLLQALCYELM 194 (235)
Q Consensus 153 la~~~~~~g~~~eAi~~l~kai~-------l~P~~~~a~~~lA~~~~~~ 194 (235)
.|.-+-+.|++++|+.+|+++++ ..||+..-...+..+..++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~ 60 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYK 60 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 34444456666666655555443 4566555444444444433
No 351
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.66 E-value=3.8 Score=28.78 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhhchh
Q 026642 164 KEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL--LRALHDLGRYVSMTLQ 230 (235)
Q Consensus 164 ~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~~~ 230 (235)
+.|..+..+|++.|-. ..+.-|..+ |.+|++.+.+++...||+ -..+......|..+-+
T Consensus 4 ~~A~~~a~~AVe~D~~---gr~~eAi~~-----Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae 64 (75)
T cd02682 4 EMARKYAINAVKAEKE---GNAEDAITN-----YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIE 64 (75)
T ss_pred HHHHHHHHHHHHHHhc---CCHHHHHHH-----HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 4577777777777633 222333333 667888888888999998 3455666666665543
No 352
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.09 E-value=14 Score=34.95 Aligned_cols=90 Identities=8% Similarity=0.001 Sum_probs=65.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------------CHHHH--HHHHHHHHHcCCHHHHHHHH
Q 026642 140 LEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN-------------EVEWK--LLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 140 L~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~-------------~~~a~--~~lA~~~~~~g~~~~A~~~l 204 (235)
-+..|+.+-.....|....++|+|.+|++.+..--+.-.+ ..+.+ ...|.++...|++.++...+
T Consensus 72 ~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iL 151 (549)
T PF07079_consen 72 RQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAIL 151 (549)
T ss_pred HHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3457888888888899999999999999988766554111 11222 24689999999999999999
Q ss_pred HHHHHHCC-----CCHHHHHHHHHHHhhch
Q 026642 205 KDILKERP-----LLLRALHDLGRYVSMTL 229 (235)
Q Consensus 205 ~kaL~~~P-----~~~~a~~~l~~~~~~~~ 229 (235)
++++..-- =+...|.+.++++.+.+
T Consensus 152 n~i~~~llkrE~~w~~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 152 NRIIERLLKRECEWNSDMYDRAVLMLSRSY 181 (549)
T ss_pred HHHHHHHhhhhhcccHHHHHHHHHHHhHHH
Confidence 98876432 24777777777766543
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.98 E-value=1.5 Score=27.49 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642 151 KVVMQGNMRRGRNKEALEFVKRLIDI 176 (235)
Q Consensus 151 ~~la~~~~~~g~~~eAi~~l~kai~l 176 (235)
..|+..|++.|+.+.|.+.++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56899999999999999999999953
No 354
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=85.89 E-value=22 Score=34.28 Aligned_cols=93 Identities=11% Similarity=0.060 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQG-NMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~-~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
..|..+|.++-+..-.--..+..-|.+ |.-.++.+-|...++--++..++.+.+-.....-+...++-+.|...|++++
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 445556666554322222333333332 4457889999999999999999999988888888999999999999999998
Q ss_pred HH--CCCC-HHHHHHHH
Q 026642 209 KE--RPLL-LRALHDLG 222 (235)
Q Consensus 209 ~~--~P~~-~~a~~~l~ 222 (235)
.. .|+- .+.|....
T Consensus 463 ~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 463 TSVLSADKSKEIWDRML 479 (656)
T ss_pred hccCChhhhHHHHHHHH
Confidence 87 5544 34554433
No 355
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=85.89 E-value=1.3 Score=24.28 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLID 175 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~ 175 (235)
|..+...|.+.|++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45556666666666666666666544
No 356
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.85 E-value=9.4 Score=33.11 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 026642 144 PRNVEALKVVMQGNMRRGRNKEALEFV----------------KRLIDIEPNEVEWKLLQALC-YELMGKLSTAKRLFKD 206 (235)
Q Consensus 144 P~~~~a~~~la~~~~~~g~~~eAi~~l----------------~kai~l~P~~~~a~~~lA~~-~~~~g~~~~A~~~l~k 206 (235)
-.+++.+..+|..|.+.|++.+|..++ ....+-+|.+.+.+..+|++ |...|+...|.+.++.
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 368899999999999999999987774 11223457778888888865 7778999999998888
Q ss_pred HHHH
Q 026642 207 ILKE 210 (235)
Q Consensus 207 aL~~ 210 (235)
.++.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8777
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.79 E-value=1.8 Score=42.00 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV--EWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 134 ~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~--~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
.....+++.++.+...+..-+...-.+|+.-+|..|+..++-+.|+.. -+++.+|.++..+|...+|--.+..++...
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 445556666666655555444444556777777777777776665532 245556666666666666666666666555
Q ss_pred CCCHHHHHHHHHHHhhchh
Q 026642 212 PLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 212 P~~~~a~~~l~~~~~~~~~ 230 (235)
|....-++-++.++.++++
T Consensus 280 ~~~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGE 298 (886)
T ss_pred ccccccceeHHHHHHHHhh
Confidence 5554445555555554443
No 358
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.53 E-value=9.6 Score=29.97 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 026642 151 KVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE 182 (235)
Q Consensus 151 ~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~ 182 (235)
..+|..++.+|+++++..++-.||...+.-.+
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaq 116 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQ 116 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHH
Confidence 45677788888888888888888877766444
No 359
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.30 E-value=6.2 Score=33.81 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCH
Q 026642 130 SEVEEMFEKLLEKEP------RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMGKL 197 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P------~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g~~ 197 (235)
...++.++++.+.-. --......+|..|+..|+|++|++.|+.+....-.+ ......+..|+...|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 345666666665422 122455678999999999999999999997654321 24455577888899998
Q ss_pred HHHHHHHHHHH
Q 026642 198 STAKRLFKDIL 208 (235)
Q Consensus 198 ~~A~~~l~kaL 208 (235)
++.+...-+++
T Consensus 235 ~~~l~~~leLl 245 (247)
T PF11817_consen 235 EDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHh
Confidence 88777665543
No 360
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=84.82 E-value=11 Score=28.99 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--------------E--VEWKLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--------------~--~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
.+.+..+...+.+.|+.+....++++.-..+.+ . .+.....+.+|..+|++..|++..+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456667788888899999988888887766533 2 355666778899999999999999999999
Q ss_pred CCCC--HHHHHH
Q 026642 211 RPLL--LRALHD 220 (235)
Q Consensus 211 ~P~~--~~a~~~ 220 (235)
+|=. ..+|..
T Consensus 82 Y~I~i~~~~W~~ 93 (126)
T PF12921_consen 82 YPIPIPKEFWRR 93 (126)
T ss_pred cCCCCCHHHHHH
Confidence 9854 344433
No 361
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=84.32 E-value=11 Score=36.64 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.+.+....+..+-............+..+..-|+.++|..+|++++..+|+ .+++..|+-++..|-...|...++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 24 LAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344444444444444444555555566666666667777777777776666 455556666666666666655554
No 362
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=83.94 E-value=2.6 Score=23.37 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLID 175 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~ 175 (235)
|..+...|.+.|++++|++.|++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55566677777777777777777654
No 363
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.90 E-value=4.8 Score=34.50 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhc
Q 026642 161 GRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMT 228 (235)
Q Consensus 161 g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~ 228 (235)
..-...|+.++++++..... ......+|.-|+..|+|++|.+.|+.+....-.. ..++..+..++.+.
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 34456788888888765432 2344568999999999999999999997765543 44555566666655
Q ss_pred hhhc
Q 026642 229 LQIQ 232 (235)
Q Consensus 229 ~~~~ 232 (235)
++.+
T Consensus 232 ~~~~ 235 (247)
T PF11817_consen 232 GDVE 235 (247)
T ss_pred CCHH
Confidence 5543
No 364
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.73 E-value=8.2 Score=37.24 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLL-QALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~-lA~~~~~~g~~~~A~~~l~ka 207 (235)
.+.+...|...|...|..--.|...|..-.+.|..+.+++.|++.+.--|-..+.|.. ++.+-...|+.+.-.+.|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999999999988887775 455666778888888888888
Q ss_pred HHHCCCC
Q 026642 208 LKERPLL 214 (235)
Q Consensus 208 L~~~P~~ 214 (235)
....-.+
T Consensus 141 ~~~vG~d 147 (577)
T KOG1258|consen 141 KSYVGLD 147 (577)
T ss_pred HHhcccc
Confidence 7766554
No 365
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.56 E-value=6.1 Score=31.18 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=46.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642 172 RLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS 233 (235)
Q Consensus 172 kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~ 233 (235)
+.+++- ...+.....|+-....|++.-|....+.++..+|+|..+..-.+.++.+.+...+
T Consensus 62 ~~v~l~-GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 62 RYVELA-GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 334442 4577788888999999999999999999999999999999888888887766543
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=83.24 E-value=4.6 Score=37.44 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLID--IEP--NEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~--l~P--~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
.....|-+.|+..+.|+.|.+...+..- .+. +.+++.+.+|.+-.-+++|..|.+++-.++...|++
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3445567778888999999998888762 222 235667789999999999999999999999999986
No 367
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=83.09 E-value=22 Score=28.36 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=14.4
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHCCC
Q 026642 187 QALCYELMG-KLSTAKRLFKDILKERPL 213 (235)
Q Consensus 187 lA~~~~~~g-~~~~A~~~l~kaL~~~P~ 213 (235)
+|..+...| +.++|..+|-++|...|+
T Consensus 96 ~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 96 LGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 455555555 555555555555555554
No 368
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.61 E-value=2.8 Score=29.48 Aligned_cols=33 Identities=12% Similarity=0.394 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI 176 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l 176 (235)
.++|+..+.++++.| ..|+|++|+..|..+++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 456666666665544 567888888888888774
No 369
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.93 E-value=20 Score=34.84 Aligned_cols=82 Identities=10% Similarity=0.057 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCC----CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC--CCCHH----HHHHHHHHHHHcCCHHH
Q 026642 131 EVEEMFEKLLEKEP----RNVEALKVVMQGNM-RRGRNKEALEFVKRLIDIE--PNEVE----WKLLQALCYELMGKLST 199 (235)
Q Consensus 131 eA~~~~e~aL~~~P----~~~~a~~~la~~~~-~~g~~~eAi~~l~kai~l~--P~~~~----a~~~lA~~~~~~g~~~~ 199 (235)
.|+.+++.+++..+ .++.+...+|.+++ ...++++|..+++|++.+. ++..+ ..+.++.+|...+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45555555553211 12334555555555 3455666666666665544 22222 2233455555555555
Q ss_pred HHHHHHHHHHHCCC
Q 026642 200 AKRLFKDILKERPL 213 (235)
Q Consensus 200 A~~~l~kaL~~~P~ 213 (235)
|+..+++.++..-+
T Consensus 118 a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 118 ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666555554433
No 370
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.92 E-value=3.1 Score=29.30 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=15.5
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q 026642 157 NMRRGRNKEALEFVKRLIDI 176 (235)
Q Consensus 157 ~~~~g~~~eAi~~l~kai~l 176 (235)
.-+.|+|++|+.+|.++++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 33678888888888888764
No 371
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.80 E-value=11 Score=36.73 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C------CHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHHCC
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEP---N------EVEWKLLQALCYELMGKLSTAKRLFK--------DILKERP 212 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P---~------~~~a~~~lA~~~~~~g~~~~A~~~l~--------kaL~~~P 212 (235)
+...+...+-.|++..|...++.+.+... . .+..++..|..+...|+.+.|+..|. .+....+
T Consensus 364 ~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~ 443 (608)
T PF10345_consen 364 LFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK 443 (608)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc
Confidence 34455566778999999999998876532 2 37788999999999999999999997 5555555
Q ss_pred CC---HHHHHHHHHHHhhc
Q 026642 213 LL---LRALHDLGRYVSMT 228 (235)
Q Consensus 213 ~~---~~a~~~l~~~~~~~ 228 (235)
.+ +-+..++..++...
T Consensus 444 ~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 444 FRELYILAALNLAIILQYE 462 (608)
T ss_pred chHHHHHHHHHHHHHhHhh
Confidence 55 34445666665543
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.58 E-value=18 Score=36.60 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=67.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPR---------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-----VEWKLLQALC 190 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~---------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-----~~a~~~lA~~ 190 (235)
....+++|..+..++...-+. -++.....|.+....|+.++|++..+.++..=|.+ .......|.+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 344577887777776654322 23455666788889999999999999999876654 3456678999
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 191 YELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 191 ~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
..-.|++++|..+...+.+..-.+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998874433
No 373
>PF13041 PPR_2: PPR repeat family
Probab=81.14 E-value=11 Score=23.46 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 180 EVEWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 180 ~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
+...|..+-..|...|++++|.+.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 35677888899999999999999999998754
No 374
>PRK10722 hypothetical protein; Provisional
Probab=81.06 E-value=35 Score=29.41 Aligned_cols=76 Identities=8% Similarity=-0.055 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK-LSTAKRLFKDILKERPLLLRALHDLGR 223 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~-~~~A~~~l~kaL~~~P~~~~a~~~l~~ 223 (235)
+|+-.|.....+.-+.+. .+|- .++-.+..++...-+..|.++...+- ..++...++++.......+..+.=|+.
T Consensus 73 ~N~LYWlR~mdcAdRL~~-~ear---~ea~~~~~~~w~~afkq~ILL~~a~~t~~err~~l~rl~~~~~~~p~~lrPL~q 148 (247)
T PRK10722 73 NNPLYWLRAMDCADRLMP-AQAR---AQAKRLPDDSWQNAFKQGILLADAKITPAERRQIVERLNAYSLQIPAQVRPLYQ 148 (247)
T ss_pred cchHHHHHHHHHHHhcCH-HHHH---HHHHhcCCCCHHHHHHHHHHHcCCCCChHHHHHHHHHHhhcccccchhhhHHHH
Confidence 566667766666666655 2332 23333445556666666665544432 566777777776666666544444443
Q ss_pred H
Q 026642 224 Y 224 (235)
Q Consensus 224 ~ 224 (235)
+
T Consensus 149 l 149 (247)
T PRK10722 149 L 149 (247)
T ss_pred H
Confidence 3
No 375
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=80.65 E-value=13 Score=28.38 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=51.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHhhCCCCHHHHHHHHHHHHHc
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKR---------LIDIEPNEVEWKLLQALCYELM 194 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~k---------ai~l~P~~~~a~~~lA~~~~~~ 194 (235)
.+.+.....+..++.++..++.+......++.+|.+.+ .++.++.++. ++++-.. ...|-....+|...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l~~~~~~l~~k~ 95 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDIEKVGKLCEK-AKLYEEAVELYKKD 95 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCHHHHHHHHHH-cCcHHHHHHHHHhh
Confidence 33445788899999999988888899999999998764 3455555552 2221111 11233445566677
Q ss_pred CCHHHHHHHHH
Q 026642 195 GKLSTAKRLFK 205 (235)
Q Consensus 195 g~~~~A~~~l~ 205 (235)
|++++|++.+-
T Consensus 96 ~~~~~Al~~~l 106 (140)
T smart00299 96 GNFKDAIVTLI 106 (140)
T ss_pred cCHHHHHHHHH
Confidence 77777766653
No 376
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.63 E-value=9.3 Score=37.67 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
+.+.+....++.+..++++.+..++..+-+.......|++-+|+++...|+.++|...|+++..
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444444556667889999888888886554556789999999999999999999999999854
No 377
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.48 E-value=3.9 Score=27.72 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=11.9
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 026642 158 MRRGRNKEALEFVKRLID 175 (235)
Q Consensus 158 ~~~g~~~eAi~~l~kai~ 175 (235)
-+.|++++|+++|.++++
T Consensus 16 D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHTTSHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 356777777777766654
No 378
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.12 E-value=21 Score=37.14 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
+.++.|..+|...++.|...+|++-|-|+ +++..|...-.+....|.|++-++++.-+-+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 67899999999999999999999998775 67888888889999999999999998777553
No 379
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=79.89 E-value=7.4 Score=35.24 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRL 173 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~ka 173 (235)
..+|+-++|.++..+|.|......+.++|...|-.+.|.+.|+.+
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 478899999999999999999999999999999999999888653
No 380
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.75 E-value=32 Score=32.35 Aligned_cols=68 Identities=18% Similarity=0.070 Sum_probs=44.0
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHHCCCCHHHHHHHHHHHhhch
Q 026642 158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI--------LKERPLLLRALHDLGRYVSMTL 229 (235)
Q Consensus 158 ~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka--------L~~~P~~~~a~~~l~~~~~~~~ 229 (235)
++.|+++.|.+..+ .-+++.-|..+|.+....|+++-|.++|+++ |..--++...+..++.....++
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 45566666555433 2457889999999999999999999999885 3333444555555555444444
Q ss_pred h
Q 026642 230 Q 230 (235)
Q Consensus 230 ~ 230 (235)
+
T Consensus 404 ~ 404 (443)
T PF04053_consen 404 D 404 (443)
T ss_dssp -
T ss_pred C
Confidence 3
No 381
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=79.47 E-value=4.2 Score=37.99 Aligned_cols=59 Identities=20% Similarity=0.179 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 151 KVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 151 ~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
..|..+|++.++.+-|+....+.|.++|.+..-++..|.|...+.+|.+|.+.+--+.-
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999887766544
No 382
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=79.25 E-value=29 Score=30.56 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC------C----------------HHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642 165 EALEFVKRLIDIEPNEVEWKLLQALCYELMG------K----------------LSTAKRLFKDILKERPLLLRALHDLG 222 (235)
Q Consensus 165 eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g------~----------------~~~A~~~l~kaL~~~P~~~~a~~~l~ 222 (235)
+-.+.++.-++..|+...++..+|..+...+ . .+.|...+.++++++|+.+.++..+.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3556666666777777766666665543221 1 35677777777888888777776665
Q ss_pred HHHhhc
Q 026642 223 RYVSMT 228 (235)
Q Consensus 223 ~~~~~~ 228 (235)
.+-...
T Consensus 141 ~~s~~f 146 (277)
T PF13226_consen 141 NISAYF 146 (277)
T ss_pred HHHhhc
Confidence 554433
No 383
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=79.01 E-value=3.5 Score=22.42 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 183 WKLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
.|..+-.+|...|++++|.+.|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3567788999999999999999998754
No 384
>PF12854 PPR_1: PPR repeat
Probab=78.82 E-value=5.3 Score=23.16 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 180 EVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 180 ~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
|...|..+-..|...|+.++|.+.+++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4667888899999999999999999863
No 385
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=78.65 E-value=6.1 Score=21.96 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642 149 ALKVVMQGNMRRGRNKEALEFVKRLID 175 (235)
Q Consensus 149 a~~~la~~~~~~g~~~eAi~~l~kai~ 175 (235)
.|..+...+.+.|+++.|.+.++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666677666666666554
No 386
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.46 E-value=27 Score=26.50 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRNV-EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~-~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+||..+++. |+..++.. -+..-....++.+|+|++| + ........++.--.+|.+-...|--+++...+.++
T Consensus 23 ~EA~tIa~w-L~~~~~~~E~v~lIr~~sLmNrG~Yq~A---L--l~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 23 QEANTIADW-LEQEGEMEEVVALIRLSSLMNRGDYQEA---L--LLPQCHCYPDLEPWAALCAWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHH-HHHTTTTHHHHHHHHHHHHHHTT-HHHH---H--HHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhCCcHHHHHHHHHHHHHHhhHHHHHH---H--HhcccCCCccHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 455555444 34344433 3455567788999999999 2 23344455666667788899999999999988854
No 387
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=78.32 E-value=28 Score=27.67 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=40.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 154 MQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 154 a~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
-....++|+-++-.+.+..+.+.+..+++..+.+|.+|...|+..+|-+.++++-+.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345567788888888888887766677899999999999999999999999888664
No 388
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.18 E-value=5.1 Score=35.52 Aligned_cols=53 Identities=32% Similarity=0.315 Sum_probs=43.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642 123 RDALMGKSEVEEMFEKLLEKEPRNV----EALKVVMQGNMRRGRNKEALEFVKRLID 175 (235)
Q Consensus 123 ~~~~~~~~eA~~~~e~aL~~~P~~~----~a~~~la~~~~~~g~~~eAi~~l~kai~ 175 (235)
+..+.+.++|+..|+++++.++... .|+..+..+++++|+|++-.+.|.+++.
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3334467899999999999988765 4778888999999999999988887764
No 389
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=78.09 E-value=1.7 Score=39.35 Aligned_cols=69 Identities=16% Similarity=0.008 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL 197 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~ 197 (235)
+..|+..-..+++.++....+++..+..+....++++|++.++.+....|++..+.-.+..+-....++
T Consensus 291 ~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 291 RGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred CCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 445555556667788999999999999999999999999999999999999988766665544443333
No 390
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=78.04 E-value=8.2 Score=34.94 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 162 RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 162 ~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
..-+|+-.++.++..+|.+....+.+.++|...|-.+.|.+.|+.+
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3557899999999999999999999999999999999999999764
No 391
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=77.94 E-value=16 Score=25.24 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=9.9
Q ss_pred HcCCHHHHHHHHHHHHh
Q 026642 159 RRGRNKEALEFVKRLID 175 (235)
Q Consensus 159 ~~g~~~eAi~~l~kai~ 175 (235)
..|++++|+.+|.++++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45666666666555554
No 392
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=77.43 E-value=17 Score=33.01 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=54.5
Q ss_pred HHHcCC-HHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHhhch
Q 026642 157 NMRRGR-NKEALEFVKRLIDIEPN---EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL-HDLGRYVSMTL 229 (235)
Q Consensus 157 ~~~~g~-~~eAi~~l~kai~l~P~---~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~-~~l~~~~~~~~ 229 (235)
++..|- -++....++.+|..-|+ .+.+|+-+|.++...|.++..+..|++|+.....-+.-+ .-+..++.++.
T Consensus 112 Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~k~ 189 (353)
T PF15297_consen 112 LIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKMKS 189 (353)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Confidence 345664 45788889999988886 478999999999999999999999999998887764433 33444444333
No 393
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.23 E-value=50 Score=32.17 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-------------
Q 026642 128 GKSEVEEMFEKLLEK------------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLID-----IE------------- 177 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~------------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~-----l~------------- 177 (235)
.|++|...|.-+.+. .|-.++.+..++.+...+|+.+-|.+.+++++- +.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 367777777766553 455678999999999999999888777777663 12
Q ss_pred ---CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Q 026642 178 ---PNEVEW---KLLQALCYELMGKLSTAKRLFKDILKERPL-LLRALHDLGRYV 225 (235)
Q Consensus 178 ---P~~~~a---~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~-~~~a~~~l~~~~ 225 (235)
|.|-.. .+...+-+...|=+.-|.+.+.-+++++|. |+.+..-+...|
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 223322 223345566778899999999999999999 655555444444
No 394
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=76.35 E-value=47 Score=33.62 Aligned_cols=99 Identities=10% Similarity=0.007 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHH-cCCHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA--LCYEL-MGKLSTAKRLFK 205 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA--~~~~~-~g~~~~A~~~l~ 205 (235)
.++-+..+++-+..++.+...+..|..++.+.|++++--..-.++.++.|..+..|..-. .++.. .++..++...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 355677888888899999999999999999999999999999999999999988777643 33322 267788999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhc
Q 026642 206 DILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 206 kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
+++..+ +.+..|...++.+.+.
T Consensus 175 kal~dy-~~v~iw~e~~~y~~~~ 196 (881)
T KOG0128|consen 175 KALGDY-NSVPIWEEVVNYLVGF 196 (881)
T ss_pred HHhccc-ccchHHHHHHHHHHhc
Confidence 998544 4566666666655443
No 395
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.22 E-value=15 Score=38.16 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=72.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------C---------------
Q 026642 124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP---------N--------------- 179 (235)
Q Consensus 124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P---------~--------------- 179 (235)
.++..|+.|.-+| +++.-|..|+..+...|+|..|.+..+|+-...- +
T Consensus 1205 f~~~~y~aAkl~y--------~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLY--------SNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred hhhhhhHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 3344456666665 4566788899999999999999988877643221 1
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642 180 -EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL 229 (235)
Q Consensus 180 -~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~ 229 (235)
.++-.-.+...|...|-+++-+..++.+|-++--+...+-+++.+|.+-.
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 23334446667888999999999999999999888888889999988743
No 396
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=76.20 E-value=16 Score=27.14 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK 196 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~ 196 (235)
...-|.+.+..||++.|.+...++-+..++..-.+..-|++-..+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 34456777889999999999999988765555666666787777775
No 397
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=75.83 E-value=21 Score=32.42 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=50.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 142 KEPRNVEALKVVMQGNMRRGRNKEALEFVK--RLIDI--EPNEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 142 ~~P~~~~a~~~la~~~~~~g~~~eAi~~l~--kai~l--~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
..|+-.++++.++.-.+..|+|.+|-+++= +++-- ++++..+.+.+-..-..+.+|+.|.+.+.++-+
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 457778999999999999999999987743 33332 334555655555557778899999999987644
No 398
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=75.78 E-value=6.6 Score=27.43 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID 175 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~ 175 (235)
.++|+..+.++++.| ..|++++|+.+|..+++
T Consensus 3 l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence 456666666665543 45666666666665554
No 399
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.54 E-value=35 Score=28.43 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=36.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 153 VMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 153 la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
...+.++.|++++|++.+++... +|+....+..|+.+-.....+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccccc
Confidence 45578899999999999999999 8998888777777766555543
No 400
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=75.46 E-value=35 Score=35.25 Aligned_cols=88 Identities=11% Similarity=-0.068 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----HHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK-----LSTAKR 202 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~-----~~~A~~ 202 (235)
.+++|...|+. |...|.-+--|.+.|.+|.+.|+|+|-+++|.-+++..|..|..-...-.+-+.+-+ ...|..
T Consensus 534 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (932)
T PRK13184 534 DFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV 612 (932)
T ss_pred HHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777765 345677888899999999999999999999999999999988766555444333322 234556
Q ss_pred HHHHHHHHCCCCHH
Q 026642 203 LFKDILKERPLLLR 216 (235)
Q Consensus 203 ~l~kaL~~~P~~~~ 216 (235)
.+--++..-|....
T Consensus 613 ~~~~~~~~~~~~~~ 626 (932)
T PRK13184 613 FMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHHhCccccc
Confidence 66677788887743
No 401
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.43 E-value=8.8 Score=35.94 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=55.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCC--------C-----CH---H--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 026642 155 QGNMRRGRNKEALEFVKRLIDIEP--------N-----EV---E--WKLLQALCYELMGKLSTAKRLFKDILKERPLLLR 216 (235)
Q Consensus 155 ~~~~~~g~~~eAi~~l~kai~l~P--------~-----~~---~--a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~ 216 (235)
..++++|+|..|+.-|..++++.. . +. . .--.+..||..+++.+.|...--+.+-++|-++.
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 345666777776666666666532 1 11 1 1224789999999999999999999999999999
Q ss_pred HHHHHHHHHhhch
Q 026642 217 ALHDLGRYVSMTL 229 (235)
Q Consensus 217 a~~~l~~~~~~~~ 229 (235)
-|...+.+.....
T Consensus 264 nHLrqAavfR~Le 276 (569)
T PF15015_consen 264 NHLRQAAVFRRLE 276 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887765544
No 402
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.49 E-value=8.4 Score=34.20 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=42.9
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 159 RRGRNKEALEFVKRLIDIEPNEVEWKL----LQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 159 ~~g~~~eAi~~l~kai~l~P~~~~a~~----~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
+..+.++|+.-|++++++.++..+|-+ .+-.+++.+|+|++-+..|.++|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 345789999999999999998877644 356789999999999999988764
No 403
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.26 E-value=28 Score=35.38 Aligned_cols=68 Identities=19% Similarity=0.067 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN---------EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~---------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
+..-...+....-+.++++|...+.++...-+. .+++...+|.+..+.|+.++|++..+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 344455566777789999999999988765443 34667789999999999999999999999988877
No 404
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=74.02 E-value=7.5 Score=30.37 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE 192 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~ 192 (235)
..|++..+-..++..-+.+.|.+.|+++++..|++..++..+...+.
T Consensus 75 Y~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 75 YSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 34555555555666666677777777777777777766666555443
No 405
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.93 E-value=44 Score=30.03 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN---EVE---WKLLQALCYELMGKLSTAKRLFKDILKERPLL----- 214 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~---~~~---a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~----- 214 (235)
-.++|.++|.-|.+-++.+.+.+++.+.++.+-. ..+ -...+|.+|..+.-.++-++..+.+++.--+-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3689999999999999999999999988875432 122 34456777766666667777777777655433
Q ss_pred HHHHHHHHHHHhhch
Q 026642 215 LRALHDLGRYVSMTL 229 (235)
Q Consensus 215 ~~a~~~l~~~~~~~~ 229 (235)
..+|.|+-.++.+.-
T Consensus 194 yK~Y~Gi~~m~~RnF 208 (412)
T COG5187 194 YKVYKGIFKMMRRNF 208 (412)
T ss_pred HHHHHHHHHHHHHhh
Confidence 567777666655543
No 406
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=73.89 E-value=15 Score=37.28 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+-.|-.+|..+|.|++|.+..+.-=++. --..|++.|.-+...+|.+.|+++|+++
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 3445567777888888877665432221 2356778888899999999999999874
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.44 E-value=54 Score=30.04 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=37.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHhh
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNV--EALKVV--MQGNMRRGRNKEALEFVKRLIDI 176 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~--~a~~~l--a~~~~~~g~~~eAi~~l~kai~l 176 (235)
...++..|.+.++..+..=|.+. +.+..+ |+.+....++++|.+.+++.+..
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35578999999999888623333 345555 44557789999999999987763
No 408
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=73.38 E-value=9.4 Score=20.94 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 184 KLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 184 ~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
|..+-..|...|++++|.+.|++..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 566778899999999999999988653
No 409
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.61 E-value=8.8 Score=26.96 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 163 NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 163 ~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
.++|+..+.++++. -..|+|++|+.+|..+++.
T Consensus 3 l~kai~Lv~~A~~e---------------D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDE---------------DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHh---------------hHhhhHHHHHHHHHHHHHH
Confidence 34566666666544 3557777777777777653
No 410
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.35 E-value=14 Score=35.31 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
|+.+.+.+..+=..-..-..+...+.+..+..|++++|+...+-.+.-+-++++....-|.....+|-+|+|.-.+.+++
T Consensus 339 ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 339 YEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 44444444333222223335666677777888888888888888887777777776666666777788888888888888
Q ss_pred HHCCCC
Q 026642 209 KERPLL 214 (235)
Q Consensus 209 ~~~P~~ 214 (235)
.++|..
T Consensus 419 ~~~~~~ 424 (831)
T PRK15180 419 LLNPET 424 (831)
T ss_pred ccCChh
Confidence 887754
No 411
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.31 E-value=35 Score=30.96 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCC-
Q 026642 146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP------NEVEWKLLQALCYELMGKLSTAKRLFKDILKER----PLL- 214 (235)
Q Consensus 146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P------~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~----P~~- 214 (235)
-.+++...+.-|++-|+-+.|++++.+..+..- +-.-....+|..|....=..+-++-.+.+++.- -.|
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 358999999999999999999999887776432 223445566776665544444444444444433 233
Q ss_pred HHHHHHHHHHHhhch
Q 026642 215 LRALHDLGRYVSMTL 229 (235)
Q Consensus 215 ~~a~~~l~~~~~~~~ 229 (235)
..+|.|+-.+..+.-
T Consensus 183 lKvY~Gly~msvR~F 197 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNF 197 (393)
T ss_pred HHHHHHHHHHHHHhH
Confidence 667777666555443
No 412
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=72.24 E-value=6 Score=27.70 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID 175 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~ 175 (235)
.+|+..+.++++.|- .|+|++|..+|..+|+
T Consensus 4 ~~A~~l~~~Ave~d~---------------~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 4 EQAAELIRLALEKEE---------------EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHH
Confidence 566677777666542 3667777666666655
No 413
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.04 E-value=44 Score=37.56 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------------HHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-----------------VEWKLLQA 188 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-----------------~~a~~~lA 188 (235)
.+.++.|...+-.+.+.. -+++....|......|+-..|+..+++.++.+-.+ ..+.+..+
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~ 1760 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT 1760 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH
Confidence 444566666555555554 45777777888888888888888888877654222 11222333
Q ss_pred HHHHHcCCH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642 189 LCYELMGKL--STAKRLFKDILKERPLLLRALHDLGRYVSM 227 (235)
Q Consensus 189 ~~~~~~g~~--~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~ 227 (235)
.-....|++ +.-++.|..+.+.+|....-|+.+|+.|.+
T Consensus 1761 ~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1761 KYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 333344443 345677777777777666666666654444
No 414
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=71.84 E-value=66 Score=27.86 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHh----C---CCC-------HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEK----E---PRN-------VEALKVVMQGNMRRGRNK---EALEFVKRLIDIEPNEVEWKLLQALC 190 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~----~---P~~-------~~a~~~la~~~~~~g~~~---eAi~~l~kai~l~P~~~~a~~~lA~~ 190 (235)
++++|..+++++.+. . ... ...+..++.+|...+.++ +|+.+++.+-...|+.+..+...-.+
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~i 130 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEI 130 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 577777777777665 1 221 234677788888877655 46666666767778878877666666
Q ss_pred HHHcCCHHHHHHHHHHHHHHCC
Q 026642 191 YELMGKLSTAKRLFKDILKERP 212 (235)
Q Consensus 191 ~~~~g~~~~A~~~l~kaL~~~P 212 (235)
....++.+++.+.+.+++..-+
T Consensus 131 l~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 131 LLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HhccCChhHHHHHHHHHHHhcc
Confidence 6668999999999999887543
No 415
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=70.94 E-value=6.9 Score=27.39 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhCC
Q 026642 163 NKEALEFVKRLIDIEP 178 (235)
Q Consensus 163 ~~eAi~~l~kai~l~P 178 (235)
+.+|+..+.++++.|-
T Consensus 3 l~~A~~l~~~Ave~d~ 18 (75)
T cd02677 3 LEQAAELIRLALEKEE 18 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777777653
No 416
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=70.77 E-value=16 Score=35.46 Aligned_cols=74 Identities=12% Similarity=0.032 Sum_probs=55.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 155 QGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 155 ~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
..+.++...+.|....+.-+--........+..|..+..-|+.+.|-.+|++++..+|+ ..+++.+.-+.+++-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 89 (578)
T PRK15490 16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGL 89 (578)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhh
Confidence 34456667777777777666555556777888899999999999999999999999999 455555555555543
No 417
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.63 E-value=40 Score=32.57 Aligned_cols=78 Identities=26% Similarity=0.223 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
.-.+-...++|+.. .+--++..++.+|.+. ..++-...++++++.+=+++..-..++..|.. ++..++...|.+++.
T Consensus 83 ~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 83 QIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 33455666677665 4567889999999998 67888999999999999988888888887766 888888888888876
Q ss_pred H
Q 026642 210 E 210 (235)
Q Consensus 210 ~ 210 (235)
.
T Consensus 160 r 160 (711)
T COG1747 160 R 160 (711)
T ss_pred H
Confidence 4
No 418
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.61 E-value=11 Score=25.21 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=25.1
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642 140 LEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID 175 (235)
Q Consensus 140 L~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~ 175 (235)
++..-.|.-=.......+++.|++++|.++++++.+
T Consensus 16 lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 343445556666777788888888888888888765
No 419
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=70.23 E-value=1.4 Score=42.30 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH--HHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 149 ALKVVMQGNMRRGRNKEALEFVKR--LIDIEPN-EVEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 149 a~~~la~~~~~~g~~~eAi~~l~k--ai~l~P~-~~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
.....+.+...+|++++|++.+.. ...+.+. ...++..+|.+|...|++-+|...+
T Consensus 63 ~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~ 121 (536)
T PF04348_consen 63 YQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARER 121 (536)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 333445555555555555555543 1112111 1234444555555555555555544
No 420
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=70.04 E-value=20 Score=25.13 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=19.6
Q ss_pred HcCCHHHHHHHHHHH-------HhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 159 RRGRNKEALEFVKRL-------IDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 159 ~~g~~~eAi~~l~ka-------i~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
+.|+|++|+.+|.++ ++.+|+...--..+..+-.++.+-+
T Consensus 18 ~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE 64 (77)
T cd02683 18 QEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAE 64 (77)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444 4456655444444444444444433
No 421
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=69.91 E-value=12 Score=21.52 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhh
Q 026642 163 NKEALEFVKRLIDI 176 (235)
Q Consensus 163 ~~eAi~~l~kai~l 176 (235)
+++|+++|+++.+.
T Consensus 24 ~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 24 YEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHc
Confidence 45566666665543
No 422
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.12 E-value=31 Score=31.22 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEA-------LEFVKRLIDIEPNEVEWK-LLQALCYELMGKLSTA 200 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eA-------i~~l~kai~l~P~~~~a~-~~lA~~~~~~g~~~~A 200 (235)
.++|+++..++++.|. .++|++| ++||..+++.+.++..+. ..++.++.++.+-++-
T Consensus 7 l~kaI~lv~kA~~eD~---------------a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkL 71 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDN---------------AKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKL 71 (439)
T ss_pred HHHHHHHHHHHhhhcc---------------hhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHH
Confidence 4678888888877642 3444444 444555555554444332 2456666666666555
Q ss_pred HHHHHH
Q 026642 201 KRLFKD 206 (235)
Q Consensus 201 ~~~l~k 206 (235)
.+++++
T Consensus 72 K~yL~~ 77 (439)
T KOG0739|consen 72 KAYLKE 77 (439)
T ss_pred HHHHHh
Confidence 555543
No 423
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=68.93 E-value=19 Score=25.18 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhhc
Q 026642 163 NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL--LRALHDLGRYVSMT 228 (235)
Q Consensus 163 ~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~ 228 (235)
...|++.+.+|++.|-. ..+.-|..+ |.+|++.|..+++.+|+. -..+......|..+
T Consensus 3 ~~~a~~l~~~Ave~D~~---g~y~eAl~~-----Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~R 62 (77)
T cd02683 3 ELAAKEVLKRAVELDQE---GRFQEALVC-----YQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDR 62 (77)
T ss_pred hHHHHHHHHHHHHHHHh---ccHHHHHHH-----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 35677777777776522 112222222 556777777778888876 34455555555443
No 424
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=68.43 E-value=16 Score=20.09 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642 183 WKLLQALCYELMGKLSTAKRLFKDILKE 210 (235)
Q Consensus 183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~ 210 (235)
.|..+..++...|+++.|.+.|+...+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5677888999999999999999987653
No 425
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=68.28 E-value=31 Score=30.37 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026642 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRR----------------------GRNKEALEFVKRLIDIEPNEVEWKLLQA 188 (235)
Q Consensus 131 eA~~~~e~aL~~~P~~~~a~~~la~~~~~~----------------------g~~~eAi~~l~kai~l~P~~~~a~~~lA 188 (235)
+..+.++.-++..|++.-++..+|..+... .-.+.|..++.++++++|..+-+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 356677777888999999999999887652 2246789999999999999999999988
Q ss_pred HHHHHcCCHH
Q 026642 189 LCYELMGKLS 198 (235)
Q Consensus 189 ~~~~~~g~~~ 198 (235)
.+-...|+.+
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 8888888875
No 426
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.22 E-value=1e+02 Score=29.62 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=13.6
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHCCCC
Q 026642 186 LQALCYELMG-KLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 186 ~lA~~~~~~g-~~~~A~~~l~kaL~~~P~~ 214 (235)
.++.+|.... .+..|+..+++++++.-++
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence 3444444444 4444555555555544443
No 427
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.14 E-value=40 Score=30.55 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDI--EPNEV----EWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l--~P~~~----~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
+..+|++|.+.++-.+|..+..++--+ +..|. ++....|+++-+.|+|-+|.+.|-++....
T Consensus 147 ~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~k 214 (399)
T KOG1497|consen 147 CIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRK 214 (399)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655655555554321 12222 222334555555555556666555555443
No 428
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=67.59 E-value=11 Score=21.15 Aligned_cols=27 Identities=22% Similarity=0.081 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 026642 149 ALKVVMQGNMRR----GRNKEALEFVKRLID 175 (235)
Q Consensus 149 a~~~la~~~~~~----g~~~eAi~~l~kai~ 175 (235)
+...+|..|..- .+.++|+.+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 344455554431 245555555555544
No 429
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.57 E-value=11 Score=25.84 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=12.4
Q ss_pred HcCCHHHHHHHHHHHHh
Q 026642 159 RRGRNKEALEFVKRLID 175 (235)
Q Consensus 159 ~~g~~~eAi~~l~kai~ 175 (235)
..|++++|+.+|.++++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 47778877777777665
No 430
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=67.42 E-value=33 Score=26.74 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C----------HHHHHHHHHHHHHcCCHHHHHHHHHH----HHHH
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPN-----E----------VEWKLLQALCYELMGKLSTAKRLFKD----ILKE 210 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~-----~----------~~a~~~lA~~~~~~g~~~~A~~~l~k----aL~~ 210 (235)
+..+|...++.+++-.++-.|++|+.+..+ . +-.--++|..+..+||.+-..++++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 456788888888888888888888764321 1 11233689999999999999988854 4556
Q ss_pred CCCC
Q 026642 211 RPLL 214 (235)
Q Consensus 211 ~P~~ 214 (235)
-|+-
T Consensus 84 iPQC 87 (140)
T PF10952_consen 84 IPQC 87 (140)
T ss_pred ccCC
Confidence 6654
No 431
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=67.28 E-value=73 Score=26.78 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR-----RGR--NKEALEFVKRLIDIEPNEVEWKLLQALCYEL 193 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~-----~g~--~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~ 193 (235)
..+...|++.|+.+.+ -+++.+-..+|.++.. .++ .+.|.+++.++.+++ +..+-++|...|..
T Consensus 86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 3345677777777665 4667777777777654 223 567888888887765 44454454444443
No 432
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.18 E-value=97 Score=30.30 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHH-----hhCCCCHHHHHHHHHHH
Q 026642 119 LKEKRDALMGKSEVEEMFEKLLEKEPR-NVEALKVVMQGNM-RRGRNKEALEFVKRLI-----DIEPNEVEWKLLQALCY 191 (235)
Q Consensus 119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~-~~~a~~~la~~~~-~~g~~~eAi~~l~kai-----~l~P~~~~a~~~lA~~~ 191 (235)
+.+.....+.+..|.++..-.+..+|. |+-+...+..+|+ +.++|+=-|+.++..- .+-|+.. +-..+|+.|
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~ 426 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFF 426 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHH
Confidence 555666677889999999999999998 9888777777764 4566766666665552 2234432 223455555
Q ss_pred HHcCC---HHHHHHHHHHHHHHCCC
Q 026642 192 ELMGK---LSTAKRLFKDILKERPL 213 (235)
Q Consensus 192 ~~~g~---~~~A~~~l~kaL~~~P~ 213 (235)
....+ ...|...+.+|++..|.
T Consensus 427 l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhcCChhhHHHHHHHHHHHHHhCcH
Confidence 55555 56799999999999985
No 433
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.02 E-value=1.2e+02 Score=29.25 Aligned_cols=81 Identities=16% Similarity=0.070 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----EWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
+...+.+....+..|+++-.....+.++...|+.+.|+...+..++ +..- --++.+|.++..+.+|..|...++
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4456667777788999999999999999999998888888888877 3322 235578899999999999999998
Q ss_pred HHHHHCC
Q 026642 206 DILKERP 212 (235)
Q Consensus 206 kaL~~~P 212 (235)
.+...+.
T Consensus 328 ~L~desd 334 (546)
T KOG3783|consen 328 LLRDESD 334 (546)
T ss_pred HHHhhhh
Confidence 8766553
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.14 E-value=46 Score=31.09 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HCCCC
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILK----------ERPLL 214 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~----------~~P~~ 214 (235)
.++..+|.=|...|+++.|+++|-++-+..-.. ...+.++-.+-..+|+|..-..+-.++.. .-|--
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 578889999999999999999999976655443 46778888899999998765555555432 23344
Q ss_pred HHHHHHHHHHHhhchh
Q 026642 215 LRALHDLGRYVSMTLQ 230 (235)
Q Consensus 215 ~~a~~~l~~~~~~~~~ 230 (235)
...+.+++.+..+++.
T Consensus 231 l~C~agLa~L~lkkyk 246 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYK 246 (466)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6677777777777554
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.92 E-value=58 Score=24.88 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 165 EALEFVKRLIDIE--PNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 165 eAi~~l~kai~l~--P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
++.+.|+.+.... -..+..|...|..+...|++++|.+.|++.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 8888888888744 4568899999999999999999999998865
No 436
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=65.22 E-value=14 Score=25.39 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=13.6
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 026642 159 RRGRNKEALEFVKRLIDI 176 (235)
Q Consensus 159 ~~g~~~eAi~~l~kai~l 176 (235)
..|++++|+.+|..+++.
T Consensus 18 ~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 18 EDGNYEEALELYKEALDY 35 (75)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 458888888888777663
No 437
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=65.22 E-value=9 Score=35.38 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHH
Q 026642 163 NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK------------LSTAKRLFKDIL 208 (235)
Q Consensus 163 ~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~------------~~~A~~~l~kaL 208 (235)
...|++++++|.. -++|+.|..+|.+++.+|+ |.+|.+.+.+|-
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN 389 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKAN 389 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 4568888888866 5678899999999888887 445666665553
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.19 E-value=53 Score=30.12 Aligned_cols=61 Identities=11% Similarity=-0.074 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCH-HHHHH--HHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 151 KVVMQGNMRRGRNKEALEFVKRLIDI-EPNEV-EWKLL--QALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 151 ~~la~~~~~~g~~~eAi~~l~kai~l-~P~~~-~a~~~--lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
...+...+..++|..|.+.++.+.+. .++.. ..+.. .|.-++..-++++|.+.+++++..+
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 34566678999999999999999985 43332 23333 4566788899999999999988763
No 439
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=63.96 E-value=11 Score=32.33 Aligned_cols=89 Identities=18% Similarity=0.098 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCH-HH-HHHHHHHHHh-hC-CCCHHHHHH--H
Q 026642 126 LMGKSEVEEMFEKLLEKEPRNV------------EALKVVMQGNMRRGRN-KE-ALEFVKRLID-IE-PNEVEWKLL--Q 187 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~P~~~------------~a~~~la~~~~~~g~~-~e-Ai~~l~kai~-l~-P~~~~a~~~--l 187 (235)
.++++.|.++.+-+++.+-.-+ +-....+......|+. +- -...++.+.. .+ |+.+.+.+. .
T Consensus 96 ~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~ 175 (230)
T PHA02537 96 IGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKAA 175 (230)
T ss_pred ccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4568899999999998753222 2222233334445552 11 1223333322 12 455666555 4
Q ss_pred HHHHH---------HcCCHHHHHHHHHHHHHHCCCC
Q 026642 188 ALCYE---------LMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 188 A~~~~---------~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
|..+. ..++...|..+++++++++|+-
T Consensus 176 G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 176 GYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 55552 3467889999999999999986
No 440
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=63.56 E-value=72 Score=25.35 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE 177 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~ 177 (235)
+..|+-.+.+....+.+..+++.+..+|.+|-+.|+..+|-+.+.+|.+..
T Consensus 100 ~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp T-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 335666677777776677889999999999999999999999999998753
No 441
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=62.74 E-value=25 Score=27.49 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642 191 YELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223 (235)
Q Consensus 191 ~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~ 223 (235)
++..-+.+.|.+.|+++++.+|++..+|..+..
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 334444556666666666666666655554443
No 442
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=62.63 E-value=63 Score=28.77 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642 152 VVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERP 212 (235)
Q Consensus 152 ~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P 212 (235)
.-+....+.|..++|+..++..+....+. -.+++.+|.++...|.++-|...|+++.+.-.
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33677788999999999999876644432 24556689999999999999999999876543
No 443
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.35 E-value=53 Score=24.74 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=44.4
Q ss_pred HHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 139 LLEKEPRNVEA-LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 139 aL~~~P~~~~a-~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
.|+..++..++ -......++.+|+|++|....+.. + +++.--.+|.|-...|--+++...+.++-
T Consensus 30 wL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 30 WLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLGLGSALESRLNRLA 95 (115)
T ss_pred HHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34445544333 333455678999999999887765 2 56666667888889998887777665543
No 444
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=61.81 E-value=20 Score=25.40 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID 175 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~ 175 (235)
+++|.+..+++|..| ..|+.++|+.+|+++++
T Consensus 5 ~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 455666666666544 33666666666666654
No 445
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=61.46 E-value=42 Score=24.81 Aligned_cols=46 Identities=17% Similarity=0.036 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 183 WKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
.....|.+....||+.+|.+.+.++-+..++..-.+..-+..-+..
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~ 106 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQ 106 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 3445678889999999999999999777655555555444444443
No 446
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.81 E-value=88 Score=30.17 Aligned_cols=65 Identities=15% Similarity=-0.059 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCC
Q 026642 150 LKVVMQGNMRRGRNKEALEFVKRLIDI------EPN-EVEWKLLQALCYELMGK-LSTAKRLFKDILKERPLL 214 (235)
Q Consensus 150 ~~~la~~~~~~g~~~eAi~~l~kai~l------~P~-~~~a~~~lA~~~~~~g~-~~~A~~~l~kaL~~~P~~ 214 (235)
+..+|.++-..|+-+.|..++..+++. ++. .|.+++.+|.+|..+|. ..++.+++.+|-+...++
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 344588888899999999999988842 222 36899999999999999 999999999997777554
No 447
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=60.44 E-value=78 Score=28.97 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Q 026642 180 EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALH 219 (235)
Q Consensus 180 ~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~ 219 (235)
+-.++..+|..+..+|+.++|...|++++.+.++.....+
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 3456667899999999999999999999999999854443
No 448
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=60.00 E-value=49 Score=27.71 Aligned_cols=68 Identities=12% Similarity=0.039 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA-LCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA-~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
...+..+....+..|||+.|.+++--+++..+=|.+....+| .++...++-....+.++......|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~ 109 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSR 109 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHh
Confidence 566777788888899999999999999998777777666666 56777776666667777777766643
No 449
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=59.80 E-value=53 Score=22.36 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642 145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
.+.........+..+.+ -++++..+.+++ +.+++.....-+..+...|+ ++++..+.+++..+++.
T Consensus 12 ~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l--~d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~~ 77 (88)
T PF13646_consen 12 PDPQVRAEAARALGELG-DPEAIPALIELL--KDEDPMVRRAAARALGRIGD-PEAIPALIKLLQDDDDE 77 (88)
T ss_dssp SSHHHHHHHHHHHHCCT-HHHHHHHHHHHH--TSSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHTC-SSH
T ss_pred CCHHHHHHHHHHHHHcC-CHhHHHHHHHHH--cCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHcCCCcH
Confidence 45566666666655554 558888888888 34567777777777777774 66888888887766543
No 450
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.48 E-value=26 Score=34.98 Aligned_cols=90 Identities=18% Similarity=0.094 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEP----RNVEALKVVMQGNM--RRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR 202 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P----~~~~a~~~la~~~~--~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~ 202 (235)
+.++.-.|..++..-| +.+......+-+|+ ..|+|..++..-+-+++..|....+.+.++.+|...++.+-|++
T Consensus 69 ~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~r 148 (748)
T KOG4151|consen 69 YEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVR 148 (748)
T ss_pred hhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4555555666666555 33333444444444 46799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHH
Q 026642 203 LFKDILKERPLLLRAL 218 (235)
Q Consensus 203 ~l~kaL~~~P~~~~a~ 218 (235)
.+.-....+|.+..+-
T Consensus 149 dl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 149 DLRIVEKMDPSNVSAS 164 (748)
T ss_pred HHHHHhcCCCCcchHH
Confidence 9999999999994443
No 451
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=59.45 E-value=71 Score=24.71 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=59.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHh----------------hCCCC--HHHHHHHHHHHHHc
Q 026642 137 EKLLEKEPRNVEALKVVMQGNMRRGRNKEALEF----VKRLID----------------IEPNE--VEWKLLQALCYELM 194 (235)
Q Consensus 137 e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~----l~kai~----------------l~P~~--~~a~~~lA~~~~~~ 194 (235)
..+....|.+.-+|..|+...+..|+.-+|..+ |.+-++ ..||. .++...|+++-...
T Consensus 26 ~~vaa~~P~ss~aWA~LAe~al~~g~~v~AYAyARTGYHRGLD~LRr~GWkG~GPVPw~HePNrGfLRal~aLa~AA~~I 105 (129)
T PF11349_consen 26 AEVAAAHPASSLAWAALAEEALAAGRPVTAYAYARTGYHRGLDQLRRNGWKGHGPVPWSHEPNRGFLRALAALARAAQAI 105 (129)
T ss_pred HHHHHHCCCchHHHHHHHHHHHhCCCchhhhhhhhccccccHHHHHHCCCCCCCCCCCccCCccHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999987666665 333332 13554 46677789999999
Q ss_pred CCHHHHHHHHHHHHHHCCCC
Q 026642 195 GKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 195 g~~~~A~~~l~kaL~~~P~~ 214 (235)
|+-+|+.++.+-+-..+|.-
T Consensus 106 GE~dE~~Rc~~~L~Dsdp~A 125 (129)
T PF11349_consen 106 GETDEYDRCRQFLRDSDPEA 125 (129)
T ss_pred CChhHHHHHHHHHHhCCHHh
Confidence 99999999988777777653
No 452
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.32 E-value=22 Score=23.86 Aligned_cols=41 Identities=22% Similarity=0.162 Sum_probs=20.3
Q ss_pred HHHHHHcCCHHHHHHHHHH-------HHHHCCCC--HHHHHHHHHHHhhc
Q 026642 188 ALCYELMGKLSTAKRLFKD-------ILKERPLL--LRALHDLGRYVSMT 228 (235)
Q Consensus 188 A~~~~~~g~~~~A~~~l~k-------aL~~~P~~--~~a~~~l~~~~~~~ 228 (235)
|.-.-..|++++|+..|.+ +++..++. -.++......|..+
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~R 61 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLER 61 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3334445565555555554 45555543 34455555544443
No 453
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.72 E-value=24 Score=36.03 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka 207 (235)
+.+.|.+...+. ++.+.|..||...+.+|+.+-|+-+|++.-..+ .+..+|.-.|+.++-.+....+
T Consensus 658 nle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe--------kLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 658 NLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRTKNFE--------KLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred CHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh--------heeEEEEEeCCHHHHHHHHHHH
Confidence 356665554443 789999999999999999999999999875544 3334444444444444444333
No 454
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.69 E-value=44 Score=37.59 Aligned_cols=66 Identities=17% Similarity=0.020 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 144 PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 144 P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
..-.+.|...|++.-..|+++.|-.++-+|.+.. -+++...+|..+...|+-..|+..+++.++++
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3456889999999999999999999999998877 67888999999999999999999999999644
No 455
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=58.68 E-value=2.1e+02 Score=29.29 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------------HHHHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE--------------VEWKLLQALCYEL 193 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~--------------~~a~~~lA~~~~~ 193 (235)
++.++.+++.++.+. -+.+++..++ ....|+...|+..+++++...-+. ....+.+ .-...
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA--~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~l-l~aL~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLA--RAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRL-LDALA 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHH-HHHHH
Confidence 455667777776543 2344444443 346889999999988888654321 1122222 22445
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642 194 MGKLSTAKRLFKDILKERPLLLRALHDLGRYVS 226 (235)
Q Consensus 194 ~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~ 226 (235)
.|++.+++..+++++....+....+..+...++
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~ 290 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLSFSTALQDLASLLH 290 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 689999999999998877666555555544443
No 456
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.36 E-value=77 Score=26.42 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=44.6
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642 157 NMRRGRNKEALEFVKRLIDIEPNE--VEWKLLQALCYELMGKLSTAKRLFKDILKERP 212 (235)
Q Consensus 157 ~~~~g~~~eAi~~l~kai~l~P~~--~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P 212 (235)
+.+.|+.++|+..+..+-+..-.. .-++...|.+....|+..+|+..|.++-...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~ 125 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS 125 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC
Confidence 346778899999999887765443 34677789999999999999999999866544
No 457
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.08 E-value=1.5e+02 Score=28.73 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------hCCCCHHHHHH---
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID--------------------IEPNEVEWKLL--- 186 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~--------------------l~P~~~~a~~~--- 186 (235)
++-...+++.++.+=+|+..-..|+..|-+ ++-..+..+|.+++. +-+++.+-.+.
T Consensus 115 ~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~ 193 (711)
T COG1747 115 EQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQK 193 (711)
T ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHH
Confidence 444566777777777777777777777766 666666666665554 22444332221
Q ss_pred ---------HH--------HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642 187 ---------QA--------LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ 230 (235)
Q Consensus 187 ---------lA--------~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~ 230 (235)
+| .-|....++++|++.+..+|+.|-.+..+..++..-+..++.
T Consensus 194 kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~ 254 (711)
T COG1747 194 KIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR 254 (711)
T ss_pred HHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc
Confidence 11 224556789999999999999999998888887776655443
No 458
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.48 E-value=35 Score=23.29 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE 180 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~ 180 (235)
.++|.....++++.|-. |..-....-|.+|++.+.+++..+|+.
T Consensus 5 ~~~A~~li~~Av~~d~~--------g~~~eAl~~Y~~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 5 LSKAKELISKALKADEA--------GDYEEALELYKKAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 35566666666655431 111112223456777777777777653
No 459
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.39 E-value=81 Score=26.30 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhCCCC--H--H----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642 163 NKEALEFVKRLIDIEPNE--V--E----WKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI 231 (235)
Q Consensus 163 ~~eAi~~l~kai~l~P~~--~--~----a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~ 231 (235)
.+.|+-.++.+-+..+.. . . .......+....|++++|.+.+++... +|+.......|.++-.++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 456777777766544431 0 1 111234578999999999999999998 888866666666665555443
No 460
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.29 E-value=38 Score=30.99 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642 149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~ 209 (235)
.-..+.+...+..+.++-|+....+++++|+.+.++..+|.- ...-..+|.+.++++|+
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALk 244 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALK 244 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHH
Confidence 345566666777888889999999999999999999998752 22334566666666655
No 461
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.85 E-value=32 Score=32.84 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
+....+++-.++.|+|.=+.+.+++++-.+|++..++.+.|.++.++|--.|+
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 33456777778899999999999999999999999999999999998865544
No 462
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=55.18 E-value=1.4e+02 Score=29.04 Aligned_cols=66 Identities=24% Similarity=0.167 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642 161 GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG--KLSTAKRLFKDILKERPLLLRALHDLGRYVSM 227 (235)
Q Consensus 161 g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g--~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~ 227 (235)
|+.++|+..+++-..- ...+-....+|.++..-| .-..-..+|+.+++.+|.....+..+.+.+..
T Consensus 323 ~~l~eal~~~e~~c~~-~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~ 390 (547)
T PF14929_consen 323 GRLKEALNELEKFCIS-STCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK 390 (547)
T ss_pred ccHHHHHHHHHHhccC-CCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh
Confidence 7888888877774332 233445556677777777 56778888999999999887777666666655
No 463
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=55.15 E-value=27 Score=34.96 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE--VEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~--~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
++++||++.| -+++-.-....++.+.|+|-...+.++.-=.-+.+. -.++.+.|..+..+.+|++|.++|
T Consensus 748 g~feeaek~y--------ld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLY--------LDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhh--------hccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 026642 205 KD 206 (235)
Q Consensus 205 ~k 206 (235)
.+
T Consensus 820 ~~ 821 (1189)
T KOG2041|consen 820 SY 821 (1189)
T ss_pred Hh
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.00 E-value=76 Score=27.04 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCC
Q 026642 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYEL-MGKLSTAKRLFKDILKERPL 213 (235)
Q Consensus 148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~-~g~~~~A~~~l~kaL~~~P~ 213 (235)
+-+..++.+..+.|+|++++++++++++.+++- .+=+..+..+|-. .|..-.+.+.+....+....
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc
Confidence 346678999999999999999999999998864 5667777777743 36666666666555554433
No 465
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=54.15 E-value=40 Score=23.02 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 026642 163 NKEALEFVKRLIDIEPNE 180 (235)
Q Consensus 163 ~~eAi~~l~kai~l~P~~ 180 (235)
|.+|++.+.++++.+++.
T Consensus 29 Y~~a~e~l~~~~~~~~~~ 46 (75)
T cd02656 29 YKEALDYLLQALKAEKEP 46 (75)
T ss_pred HHHHHHHHHHHhccCCCH
Confidence 456777777777776653
No 466
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=54.05 E-value=1e+02 Score=27.44 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=21.7
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026642 159 RRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG 195 (235)
Q Consensus 159 ~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g 195 (235)
.++++.+.++..++.+..+|-..+..+..+.++..+|
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG 147 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC
Confidence 4445555566666666555555566666666666666
No 467
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=53.82 E-value=48 Score=35.08 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=69.1
Q ss_pred HHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642 135 MFEK-LLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID-------IE-PNEVEWKLLQALCYELMGKLSTAKRLFK 205 (235)
Q Consensus 135 ~~e~-aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~-------l~-P~~~~a~~~lA~~~~~~g~~~~A~~~l~ 205 (235)
.++. .-...|.....+..++.++.+.|++++|+.+-.++.- .+ |+....+.+++......++...|...+.
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLN 1039 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHH
Confidence 5553 3345788999999999999999999999998666553 33 3456788899999999999999999998
Q ss_pred HHHHH--------CCCCHHHHHHHHHHHhh
Q 026642 206 DILKE--------RPLLLRALHDLGRYVSM 227 (235)
Q Consensus 206 kaL~~--------~P~~~~a~~~l~~~~~~ 227 (235)
+++++ .|.-....-++.++++.
T Consensus 1040 ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~ 1069 (1236)
T KOG1839|consen 1040 RALKLKLLSSGEDHPPTALSFINLELLLLG 1069 (1236)
T ss_pred HHHHhhccccCCCCCchhhhhhHHHHHHhh
Confidence 88764 33334444555555444
No 468
>COG4499 Predicted membrane protein [Function unknown]
Probab=52.86 E-value=1.1e+02 Score=28.30 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642 127 MGKSEVEEMFEKLLEKEPR--NVEALKVVMQGNMRRGRNKEAL-EFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 127 ~~~~eA~~~~e~aL~~~P~--~~~a~~~la~~~~~~g~~~eAi-~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
.+|++.+..++.. +|+ .-.+.+.||..|....+...+- +.+...|.++.+.. +.+-.+|...|++++|+..
T Consensus 262 ~nY~qVittLe~y---dp~klPksv~Y~LA~SYV~~e~L~~~kkeNi~NnislkSd~~---~llYWi~~GRGe~~eAinI 335 (434)
T COG4499 262 NNYDQVITTLENY---DPEKLPKSVQYILAVSYVNLEDLTTTKKENILNNISLKSDDN---YLLYWIYSGRGEFKEAINI 335 (434)
T ss_pred ccHHHHhhhcccC---ChhhCcHHHHHHHHHHHhhccccchHHHHHHhhccccccchh---HHHHHHHhcCccHHHHhhH
Confidence 3456666554432 333 2368889999998876654432 22333333433321 2333567778999999987
Q ss_pred HHH
Q 026642 204 FKD 206 (235)
Q Consensus 204 l~k 206 (235)
-+.
T Consensus 336 Ar~ 338 (434)
T COG4499 336 ARN 338 (434)
T ss_pred HHh
Confidence 654
No 469
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.78 E-value=73 Score=24.19 Aligned_cols=47 Identities=15% Similarity=-0.028 Sum_probs=32.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 154 MQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200 (235)
Q Consensus 154 a~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A 200 (235)
+.+-.-.-..+||...++-+-..+...--+...+...+.+.|+|++|
T Consensus 13 AL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 13 ALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 33333344678998888877666543445666788899999999999
No 470
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.24 E-value=32 Score=24.35 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 026642 161 GRNKEALEFVKRLIDIEP 178 (235)
Q Consensus 161 g~~~eAi~~l~kai~l~P 178 (235)
+.|+.|.+++++++..|.
T Consensus 3 ~~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 3 GYYKQAFEEISKALRADE 20 (79)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 457778888888877664
No 471
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.07 E-value=42 Score=29.86 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHcCCHHHHH
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRR--GRNKEALEFVKRLIDIEPNEVEWKLLQALCY------ELMGKLSTAK 201 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~--g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~------~~~g~~~~A~ 201 (235)
+.-...+..+++.+|++-..|.-.-.++-.. .++..-....+++++.|+.|.-.|..+-.+. ..-.++..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 5566778899999999999998877776554 6688888889999999999877666654444 3333344456
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
Q 026642 202 RLFKDILKERPLLLRALHDLGRYV 225 (235)
Q Consensus 202 ~~l~kaL~~~P~~~~a~~~l~~~~ 225 (235)
++-..+++.|+.|..+|.......
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~ 194 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWI 194 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHH
Confidence 666778999999999998774443
No 472
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=51.68 E-value=98 Score=23.17 Aligned_cols=16 Identities=13% Similarity=-0.109 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHHHH
Q 026642 126 LMGKSEVEEMFEKLLE 141 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~ 141 (235)
.+++++|.+.+++..+
T Consensus 41 ~~dW~~A~~~~~~l~~ 56 (121)
T PF14276_consen 41 NEDWEKAYKETEELEK 56 (121)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 3455666555554443
No 473
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=51.15 E-value=39 Score=19.72 Aligned_cols=25 Identities=8% Similarity=0.311 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642 196 KLSTAKRLFKDILKERPLLLRALHDL 221 (235)
Q Consensus 196 ~~~~A~~~l~kaL~~~P~~~~a~~~l 221 (235)
++|.|...|++.+...|+ +..|...
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 456666666666666654 4444433
No 474
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=51.01 E-value=42 Score=18.63 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHH
Q 026642 167 LEFVKRLIDIEPNEVEWKLLQA 188 (235)
Q Consensus 167 i~~l~kai~l~P~~~~a~~~lA 188 (235)
++...+++..+|.+..+|..+-
T Consensus 3 l~~~~~~l~~~pknys~W~yR~ 24 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRR 24 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHH
Confidence 3444444555555544444433
No 475
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.72 E-value=82 Score=27.20 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642 145 RNVEALKVVMQGNMRRGRN--------KEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF 204 (235)
Q Consensus 145 ~~~~a~~~la~~~~~~g~~--------~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l 204 (235)
.+.+....++.+....+.- ++|+++- +.-...-.+++.+..+|..|...|++.+|..+|
T Consensus 47 ~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 47 VDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3444445555555444322 2444444 221222247899999999999999999998877
No 476
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.52 E-value=90 Score=23.47 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 026642 168 EFVKRLIDIEPN-EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLR 216 (235)
Q Consensus 168 ~~l~kai~l~P~-~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~ 216 (235)
++++++-..+-. -+.++..+|.+|...|+.|.|.+.|+.=-.+.|....
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 344554444433 3678889999999999999999999988888888743
No 477
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=50.23 E-value=1.1e+02 Score=25.86 Aligned_cols=95 Identities=12% Similarity=-0.111 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----C--
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMR-----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG-----K-- 196 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~-----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g-----~-- 196 (235)
+++|..+|..-.+.+ ..+..-+.+|.-++. .++...|++++..+.+. +.+.+-..+|.++.... +
T Consensus 51 F~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~~~g~~~r~~dpd 127 (248)
T KOG4014|consen 51 FQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRYLGLLHWNGEKDRKADPD 127 (248)
T ss_pred HHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhhhhhhhccCcCCccCCCC
Confidence 567777766655544 345666666665554 46788999999999874 57888888888876542 3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642 197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228 (235)
Q Consensus 197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~ 228 (235)
.++|.+++.++-.++ +..+-+.|...|...
T Consensus 128 ~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 128 SEKAERYMTRACDLE--DGEACFLLSTMYMGG 157 (248)
T ss_pred cHHHHHHHHHhccCC--CchHHHHHHHHHhcc
Confidence 678999999986555 666666666666544
No 478
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.08 E-value=1.5e+02 Score=27.07 Aligned_cols=13 Identities=23% Similarity=-0.056 Sum_probs=4.6
Q ss_pred HHHHHHcCCHHHH
Q 026642 188 ALCYELMGKLSTA 200 (235)
Q Consensus 188 A~~~~~~g~~~~A 200 (235)
|.+|...|+..+|
T Consensus 151 arlyLe~~d~vea 163 (399)
T KOG1497|consen 151 ARLYLEDDDKVEA 163 (399)
T ss_pred HHHHHhcCcHHHH
Confidence 3333333333333
No 479
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.04 E-value=1e+02 Score=30.37 Aligned_cols=65 Identities=20% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHH------------HH-HHHHHcCCHHHHH
Q 026642 143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--------PNEVEWKLL------------QA-LCYELMGKLSTAK 201 (235)
Q Consensus 143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--------P~~~~a~~~------------lA-~~~~~~g~~~~A~ 201 (235)
+.++..-|..||.+.+..|++..|.+|+.++-.+. -++.+.... +| .+|...|+++++.
T Consensus 662 e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHH
Confidence 34788999999999999999999999999986653 223332222 33 4677778888877
Q ss_pred HHHHHH
Q 026642 202 RLFKDI 207 (235)
Q Consensus 202 ~~l~ka 207 (235)
+.+.+.
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 776543
No 480
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.95 E-value=44 Score=23.40 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhC
Q 026642 165 EALEFVKRLIDIE 177 (235)
Q Consensus 165 eAi~~l~kai~l~ 177 (235)
.|+++..+|++.|
T Consensus 5 ~Ai~~a~~Ave~D 17 (76)
T cd02681 5 DAVQFARLAVQRD 17 (76)
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666655
No 481
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=49.07 E-value=61 Score=30.92 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 134 ~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
=.+++++.--+-.++.|..........++-+.|++..++.++..|. ....++.+|....|-++..-+|+++.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 3577888888899999999988888999999999999998877766 66678888888888776666666654
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.55 E-value=91 Score=23.77 Aligned_cols=44 Identities=23% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 131 EVEEMFEKLLEK--EPRNVEALKVVMQGNMRRGRNKEALEFVKRLI 174 (235)
Q Consensus 131 eA~~~~e~aL~~--~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai 174 (235)
++.+.|+..... --+.+..|...|..+...|++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 567777776654 56788899999999999999999999999875
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=47.99 E-value=1.2e+02 Score=27.99 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHHh
Q 026642 128 GKSEVEEMFEKLLEK 142 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~ 142 (235)
++..|.+.|++++..
T Consensus 145 dy~aA~~~~~~L~~r 159 (380)
T TIGR02710 145 DYLFAHARLETLLRR 159 (380)
T ss_pred ChHHHHHHHHHHHhc
Confidence 445555555555544
No 484
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.87 E-value=1.2e+02 Score=30.00 Aligned_cols=71 Identities=18% Similarity=0.073 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL 208 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL 208 (235)
+-+.....+++|+..++. +-. -.+.++.|+++.|.+...+ -++..-|-.||.+....|++..|.++|.++-
T Consensus 623 Fle~~g~~e~AL~~s~D~-d~r---Felal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 623 FLESQGMKEQALELSTDP-DQR---FELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HhhhccchHhhhhcCCCh-hhh---hhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 344456677788775543 333 3445678888888776544 3577889999999999999999999998873
No 485
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=46.59 E-value=28 Score=32.23 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 026642 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR 162 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~ 162 (235)
.+|+++++++.. .++++.|..+|.+++..|+
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 445666666544 5788999999999988776
No 486
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=45.72 E-value=58 Score=20.23 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=14.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642 170 VKRLIDIEPNEVEWKLLQALCYELMGKLS 198 (235)
Q Consensus 170 l~kai~l~P~~~~a~~~lA~~~~~~g~~~ 198 (235)
+.++|-.+|++...+..+|.-+...|+.+
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~ 33 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDPA 33 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCHH
Confidence 34444455555555555555555555543
No 487
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.53 E-value=21 Score=35.93 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642 122 KRDALMGKSEVEEMFEKLLEK-EPRNVEALKVVMQGNMR---------RGRNKEALEFVKRLIDIEPNEVEWKLLQALCY 191 (235)
Q Consensus 122 ~~~~~~~~~eA~~~~e~aL~~-~P~~~~a~~~la~~~~~---------~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~ 191 (235)
..+..++.++|....-.+++. .|-.++.+...|++|-. .+..+.|+++|+++.+..|... .-+++|.++
T Consensus 252 RRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL 330 (1226)
T KOG4279|consen 252 RRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLL 330 (1226)
T ss_pred ccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHH
Confidence 334455678888888777776 46778888888888854 4567789999999999999743 233455555
Q ss_pred HHcCC
Q 026642 192 ELMGK 196 (235)
Q Consensus 192 ~~~g~ 196 (235)
...|+
T Consensus 331 ~aaG~ 335 (1226)
T KOG4279|consen 331 RAAGE 335 (1226)
T ss_pred HHhhh
Confidence 54444
No 488
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.34 E-value=1.1e+02 Score=28.04 Aligned_cols=44 Identities=23% Similarity=0.099 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642 147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190 (235)
Q Consensus 147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~ 190 (235)
--++...|.++.+.|+.+||-..|++++.+.++..+..+.+...
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred cccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34667788899999999999999999999999988877776654
No 489
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=44.90 E-value=56 Score=20.28 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642 134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEA 166 (235)
Q Consensus 134 ~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eA 166 (235)
..|..++-.+|++...+...+.-+...|+.+.|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 456778889999999999999999999998655
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=44.87 E-value=56 Score=33.11 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 026642 125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTAKRL 203 (235)
Q Consensus 125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A~~~ 203 (235)
..++++.|++.|-++ +.......+|-+.|+|++|.+.-++. ..|+. ...|+..|.-+...|+|.+|.+.
T Consensus 777 n~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred cchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhe
Q ss_pred H
Q 026642 204 F 204 (235)
Q Consensus 204 l 204 (235)
|
T Consensus 847 y 847 (1636)
T KOG3616|consen 847 Y 847 (1636)
T ss_pred e
No 491
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.65 E-value=2.3e+02 Score=25.27 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHHHHhC--------C--CCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-H
Q 026642 126 LMGKSEVEEMFEKLLEKE--------P--RNVEALKVV----MQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQAL-C 190 (235)
Q Consensus 126 ~~~~~eA~~~~e~aL~~~--------P--~~~~a~~~l----a~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~-~ 190 (235)
..++..|.+..++.++.= + ...+.-..+ .+.+.+.|+|.+++.+.-+-.+.-.+-|.-...+.. +
T Consensus 48 ~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL 127 (309)
T PF07163_consen 48 HRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL 127 (309)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence 445677787777777631 1 111333333 245678999999998888776653333444445654 5
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhh
Q 026642 191 YELMGKLSTAKRLFKDILKERPLL--LRALHDLGRYVSM 227 (235)
Q Consensus 191 ~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~~~ 227 (235)
|...|+.....+.- ..--.+|+| ..-|..++.+|..
T Consensus 128 ysKv~Ep~amlev~-~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 128 YSKVQEPAAMLEVA-SAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred HHHhcCHHHHHHHH-HHHHhCcccCCchhhHHHHHHHHH
Confidence 66778887655554 444577777 3445555555543
No 492
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=44.61 E-value=63 Score=23.78 Aligned_cols=78 Identities=8% Similarity=-0.035 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhhc
Q 026642 151 KVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL--LRALHDLGRYVSMT 228 (235)
Q Consensus 151 ~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~ 228 (235)
......|+..++.+..++.++.+.+.-..-|+.....+-+.....+..+|.+.+++.....-.. -.+|.-+..+|.+.
T Consensus 18 e~As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~v~~~i 97 (100)
T PF08771_consen 18 EEASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGRDLQEAREWLKRYERTGDETDLNQAWDIYYQVYRRI 97 (100)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHhhHHHHHHHHHHHHHHH
Confidence 3345566677777777777766655322222233333344444455677777777766543322 45555555555543
No 493
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=44.58 E-value=2.7e+02 Score=26.12 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642 129 KSEVEEMFEKLLEKEPRNV----EALKVVMQGNMRRGRNKEALEFVKRLID--IEPNEVEWKLLQALCYELMGKLSTAKR 202 (235)
Q Consensus 129 ~~eA~~~~e~aL~~~P~~~----~a~~~la~~~~~~g~~~eAi~~l~kai~--l~P~~~~a~~~lA~~~~~~g~~~~A~~ 202 (235)
.++++..+-+.- ..|+.. -....+.+.+++.|..++|++.++.=+. +.||+..+ ..+...+...|+|..|.+
T Consensus 82 ~d~~~~~L~k~R-~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~-n~Lmd~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 82 LDEVEDVLYKFR-HSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF-NLLMDHFLKKGNYKSAAK 159 (429)
T ss_pred HHHHHHHHHHHH-cCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH-HHHHHHHhhcccHHHHHH
Confidence 455665555433 233332 2235788899999999999999987665 45775554 455567899999999999
Q ss_pred HHHHHHHHC-CCC-HHHHHHHHHHHh
Q 026642 203 LFKDILKER-PLL-LRALHDLGRYVS 226 (235)
Q Consensus 203 ~l~kaL~~~-P~~-~~a~~~l~~~~~ 226 (235)
....+...+ .++ ......+..+|.
T Consensus 160 V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 160 VATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHH
Confidence 987765544 444 333344444443
No 494
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.97 E-value=58 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 026642 151 KVVMQGNMRRGRNKEALEFVKRLIDIEPN 179 (235)
Q Consensus 151 ~~la~~~~~~g~~~eAi~~l~kai~l~P~ 179 (235)
..+|..++..|++++|..++-+|+...|.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 34666666777777777777777777665
No 495
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.63 E-value=1.5e+02 Score=27.22 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCCHH-HHH--HHHHHHHHcCCHHHHHHHHHH---HHhhC---------------------------CC
Q 026642 133 EEMFEKLLEKEPRNVE-ALK--VVMQGNMRRGRNKEALEFVKR---LIDIE---------------------------PN 179 (235)
Q Consensus 133 ~~~~e~aL~~~P~~~~-a~~--~la~~~~~~g~~~eAi~~l~k---ai~l~---------------------------P~ 179 (235)
...|++.++.-|++.+ .+. .-|.++...|+|.+....++- ..+.+ |.
T Consensus 41 ~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~ 120 (449)
T COG3014 41 KKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGN 120 (449)
T ss_pred hhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCch
Confidence 4556666665544433 333 347778887877665444332 22222 22
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642 180 EV---EWKLLQALCYELMGKLSTAKRLFKDILKER 211 (235)
Q Consensus 180 ~~---~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~ 211 (235)
.. -..+.+|.-|....|++.|.-.|+++.+..
T Consensus 121 ~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 121 IYEGVLINYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred hHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 22 234567888999999999999998887655
No 496
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=43.19 E-value=2.7e+02 Score=25.71 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=13.1
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 026642 154 MQGNMRRGRNKEALEFVK 171 (235)
Q Consensus 154 a~~~~~~g~~~eAi~~l~ 171 (235)
|..+...-++++|.++++
T Consensus 178 ~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 178 AYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHccCHHHHHHHHh
Confidence 344466778888888888
No 497
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.97 E-value=1.2e+02 Score=25.80 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q 026642 164 KEALEFVKRLID-----IEPNEVE---WKLLQALCY-ELMGKLSTAKRLFKDILK 209 (235)
Q Consensus 164 ~eAi~~l~kai~-----l~P~~~~---a~~~lA~~~-~~~g~~~~A~~~l~kaL~ 209 (235)
+.|.++|++|++ +.|.+|- ..++.++.| ..+|+.++|.+..++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 678888888876 5677763 344556655 448999999888877765
No 498
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=42.45 E-value=93 Score=27.63 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------HHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 026642 128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGN----------MRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCY 191 (235)
Q Consensus 128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~----------~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~ 191 (235)
+.-.|...|...+...|.|..++..-+.+. ...-..+.|.+.+++|+.+...- ....++++..|
T Consensus 10 e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~ 89 (368)
T COG5091 10 EPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHF 89 (368)
T ss_pred chHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHh
Confidence 345677777777777777765544333322 12345678999999998765431 23456788999
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCC
Q 026642 192 ELMGKLSTAKRLFKDILKERPLL 214 (235)
Q Consensus 192 ~~~g~~~~A~~~l~kaL~~~P~~ 214 (235)
+...+|+.|..+|.+++.+.-++
T Consensus 90 ~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 90 FNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999987666
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.42 E-value=76 Score=28.93 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q 026642 130 SEVEEMFEKLLEKEPR---NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-EWKLLQALCYE 192 (235)
Q Consensus 130 ~eA~~~~e~aL~~~P~---~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-~a~~~lA~~~~ 192 (235)
++....+...++.=|+ .+..|..+|+++...|.+++.|..|++||.....-. +.+..+..++.
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4455566655555553 567899999999999999999999999999876532 34444555544
No 500
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=42.32 E-value=77 Score=29.29 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642 152 VVMQGNMRRGRNKEALEFVKRLIDIE-P--------NEVEWKLLQALCYELMGKLSTAKRLFKDILKERPL 213 (235)
Q Consensus 152 ~la~~~~~~g~~~eAi~~l~kai~l~-P--------~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~ 213 (235)
.+-.+|++.++.+-+...++-....+ | ..+..++.+|.+|..+.++-+|...+++++..-|+
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 34567899999887765554433311 1 23467899999999999999999999999998887
Done!