BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026643
         (235 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AW6|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 (Face1)
 pdb|4AW6|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 (Face1)
 pdb|4AW6|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 (Face1)
 pdb|4AW6|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 (Face1)
          Length = 482

 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 15/76 (19%)

Query: 131 NHHTLKL-LKDWTWQFVVIR----PVCSILMIALQLLGLYSNWISWTFTIILNISVSLAL 185
           N  TL   +KD   +FVV +    PV S+L+  +++ G Y    +W FT++    VSL L
Sbjct: 156 NQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLV----VSLVL 211

Query: 186 YSLVIFYHVFAKELAP 201
            +      ++A  +AP
Sbjct: 212 VT------IYADYIAP 221


>pdb|2YPT|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 Mutant (E336a) In Complex With
           A Synthetic Csim Tetrapeptide From The C-Terminus Of
           Prelamin A
 pdb|2YPT|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 Mutant (E336a) In Complex With
           A Synthetic Csim Tetrapeptide From The C-Terminus Of
           Prelamin A
 pdb|2YPT|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 Mutant (E336a) In Complex With
           A Synthetic Csim Tetrapeptide From The C-Terminus Of
           Prelamin A
 pdb|2YPT|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 Mutant (E336a) In Complex With
           A Synthetic Csim Tetrapeptide From The C-Terminus Of
           Prelamin A
          Length = 482

 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 15/76 (19%)

Query: 131 NHHTLKL-LKDWTWQFVVIR----PVCSILMIALQLLGLYSNWISWTFTIILNISVSLAL 185
           N  TL   +KD   +FVV +    PV S+L+  +++ G Y    +W FT++    VSL L
Sbjct: 156 NQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLV----VSLVL 211

Query: 186 YSLVIFYHVFAKELAP 201
            +      ++A  +AP
Sbjct: 212 VT------IYADYIAP 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.140    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,373,190
Number of Sequences: 62578
Number of extensions: 215936
Number of successful extensions: 373
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 2
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.9 bits)