Query 026643
Match_columns 235
No_of_seqs 108 out of 463
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03619 Solute_trans_a: Organ 100.0 4.5E-66 9.7E-71 460.6 22.7 221 4-231 1-230 (274)
2 KOG2641 Predicted seven transm 100.0 8.3E-61 1.8E-65 440.2 22.4 222 3-231 32-258 (386)
3 KOG3979 FGF receptor activatin 59.3 78 0.0017 29.0 9.0 85 3-94 172-258 (296)
4 PRK10764 potassium-tellurite e 37.7 1.6E+02 0.0036 26.7 7.7 59 3-61 161-219 (324)
5 COG2864 FdnI Cytochrome b subu 34.1 1.8E+02 0.004 25.5 7.0 58 2-62 111-168 (218)
6 PF10361 DUF2434: Protein of u 31.8 67 0.0014 29.4 4.0 39 9-48 221-259 (296)
7 PF14333 DUF4389: Domain of un 30.7 67 0.0015 23.4 3.3 24 38-61 2-25 (80)
8 PF13850 ERGIC_N: Endoplasmic 29.1 39 0.00084 25.4 1.8 30 10-39 21-50 (96)
9 PF03595 SLAC1: Voltage-depend 29.0 2.3E+02 0.0049 25.3 7.1 59 3-61 169-227 (330)
10 PF04544 Herpes_UL20: Herpesvi 26.5 3.8E+02 0.0081 22.8 7.5 74 136-211 24-98 (179)
11 PF07146 DUF1389: Protein of u 26.2 85 0.0019 29.0 3.8 34 5-38 3-36 (314)
12 PF00558 Vpu: Vpu protein; In 24.6 1.1E+02 0.0025 22.6 3.5 29 15-45 14-42 (81)
13 PRK11056 hypothetical protein; 24.1 3.6E+02 0.0078 21.4 6.4 42 13-54 38-79 (120)
14 COG1914 MntH Mn2+ and Fe2+ tra 24.0 2.4E+02 0.0053 27.0 6.6 53 7-59 293-346 (416)
15 PF02285 COX8: Cytochrome oxid 22.5 91 0.002 20.4 2.4 21 16-36 23-43 (44)
16 PF07226 DUF1422: Protein of u 21.4 4.2E+02 0.0091 21.0 6.4 35 13-47 38-72 (117)
17 PF11466 Doppel: Prion-like pr 21.1 50 0.0011 19.8 0.8 22 1-22 1-22 (30)
No 1
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=4.5e-66 Score=460.62 Aligned_cols=221 Identities=38% Similarity=0.620 Sum_probs=203.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhHhHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Q 026643 4 ARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLIDFQGSKAFFMFLESVKECYEAL 83 (235)
Q Consensus 4 ~~~~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~~~~~s~~~~~y~~~ird~YEA~ 83 (235)
|++++++||+|+++|+++|+++|++|++||++|++||+|+||++|+|+||++||+|+++||++ +|+|++||+|||+
T Consensus 1 ~~~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~----~~~~~ir~~Yea~ 76 (274)
T PF03619_consen 1 HTWAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAA----IYLDFIRDCYEAF 76 (274)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999864 6999999999999
Q ss_pred HHHHHHHHHHHhcCCccccccccccccCC-ccccCCccc--cccccccccChhhHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 026643 84 VIAKFLALLYSYLNISISKNIVPDEIKGR-EIHHSFPMT--LFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQ 160 (235)
Q Consensus 84 viy~F~~Ll~~ylgg~~~~~~~~~~~~~~-~~~~~~P~~--~~~p~~~~~~~~~l~~~k~~vlQy~iikPl~sii~iil~ 160 (235)
++|+|+.|+++|+|||++ ..++++++ +++|++|+| ||++++.++|++++|+||.||+||+++||++++++++++
T Consensus 77 ~ly~F~~Ll~~y~gg~~~---~~~~l~~~~~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl~~~i~iil~ 153 (274)
T PF03619_consen 77 VLYSFFSLLLNYLGGEEA---LVEVLSGKPPIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVRPLLSIISIILE 153 (274)
T ss_pred HHHHHHHHHHHHhCCHHH---HHHHhhcCCCCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999743 34445443 577999983 344445789999999999999999999999999999999
Q ss_pred HhccCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCchhHHHHHHHHHHHhhhHHHHHHHhhh
Q 026643 161 LLGLYSNW------ISWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQVCNFKCSNSF 231 (235)
Q Consensus 161 ~~G~Y~~~------~~~~~~ii~niS~~~Aly~L~~Fy~~~k~~L~~~~P~~KFl~iK~VvflsfwQ~~ii~~L~~~ 231 (235)
.+|+|+++ +..|+++++|+|+++|+|+|..||+++|++|+|+||++||+|+|+|+|++|||++++++|.+.
T Consensus 154 ~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii~iL~~~ 230 (274)
T PF03619_consen 154 AFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGFIISILASF 230 (274)
T ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999852 466899999999999999999999999999999999999999999999999999999999875
No 2
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-61 Score=440.19 Aligned_cols=222 Identities=37% Similarity=0.648 Sum_probs=204.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhHhHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q 026643 3 PARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLIDFQGSKAFFMFLESVKECYEA 82 (235)
Q Consensus 3 ~~~~~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~~~~~s~~~~~y~~~ird~YEA 82 (235)
.|.++..+|++++++|+.+|+.+|++|++||++|+|||+|+||++|+||||++||+|+..|+. ++|+|++||||||
T Consensus 32 ~~~~~~~~a~~f~vit~~ls~~~I~~HL~~y~~P~~qr~iv~il~mvPIys~~S~vsl~~p~~----~~~~~~vr~~Yea 107 (386)
T KOG2641|consen 32 LLTVALAIASFFVVITILLSLFHIYQHLRYYSNPREQRPIVRILFMVPIYSVASFVSLLVPRV----AFYLDTVRECYEA 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhchhhhhhhhhHHHHHHHHHHHhccch----hhhHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999983 4799999999999
Q ss_pred HHHHHHHHHHHHhcCCccccccccccccCCc--cccCCccccccccccccChhhHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 026643 83 LVIAKFLALLYSYLNISISKNIVPDEIKGRE--IHHSFPMTLFQPRTARLNHHTLKLLKDWTWQFVVIRPVCSILMIALQ 160 (235)
Q Consensus 83 ~viy~F~~Ll~~ylgg~~~~~~~~~~~~~~~--~~~~~P~~~~~p~~~~~~~~~l~~~k~~vlQy~iikPl~sii~iil~ 160 (235)
+|+|+|++||.+|+|||.+ ...+++||+ .+|++|+|||.|...++|+.++|+||+||+||+++||++++++++++
T Consensus 108 f~ly~F~sLl~~ylGGe~~---~v~~l~~~~~~~~~~~P~cc~~~p~~~~~~~~lr~~K~~vlQ~~ivkp~~~lv~lvl~ 184 (386)
T KOG2641|consen 108 FVLYVFLSLLFHYLGGEQN---IVTELEGRLIRVNHTPPFCCFFPPTVRLTPKFLRRCKQGVLQYPIVKPFLALVTLVLY 184 (386)
T ss_pred HHHHHHHHHHHHHcCChHH---HHHHHhccCCcccCCCCceeccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999743 344555554 46999999888755679999999999999999999999999999999
Q ss_pred HhccCCCc-hH--HHHHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCchhHHHHHHHHHHHhhhHHHHHHHhhh
Q 026643 161 LLGLYSNW-IS--WTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLSKFLCIKGIVFFCFWQVCNFKCSNSF 231 (235)
Q Consensus 161 ~~G~Y~~~-~~--~~~~ii~niS~~~Aly~L~~Fy~~~k~~L~~~~P~~KFl~iK~VvflsfwQ~~ii~~L~~~ 231 (235)
+.|.|+++ .. +|+++++|+|+++|+|+|.+||+++||+|+|+||+.||+|+|+|||+++||++++.++.+.
T Consensus 185 ~~g~y~~g~~~~~~~~~~i~n~S~~lalY~L~~fy~~~~~~L~py~p~~KF~~vk~ivf~~~wQg~vi~~l~~~ 258 (386)
T KOG2641|consen 185 AFGVYDDGDFSVYLYLTIIYNCSVSLALYSLVLFYTVTKDELSPYQPVVKFLCVKLIVFLSFWQGIVLAILVKL 258 (386)
T ss_pred HhcccccCCccceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999974 34 5789999999999999999999999999999999999999999999999999999998764
No 3
>KOG3979 consensus FGF receptor activating protein 1 [Signal transduction mechanisms]
Probab=59.29 E-value=78 Score=29.01 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHH--hhHhHHHHHHHHHhhccccchhHHHHHHHHHHHH
Q 026643 3 PARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIII--LMAPIYAIDSYVGLIDFQGSKAFFMFLESVKECY 80 (235)
Q Consensus 3 ~~~~~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl--~mvPiYai~S~lsl~~~~~s~~~~~y~~~ird~Y 80 (235)
-|..++.+=++|...=...|..+..-|-++|..|+-|+..-|=. ..+-+++.-|-.... ++.. +|.++- .|
T Consensus 172 lha~~Fg~f~ic~~~~ml~s~il~~~~~~~y~~~~g~~s~~~kil~~lv~~~~~~s~~~~~-~~~~----~~C~~~--ay 244 (296)
T KOG3979|consen 172 LHALGFGVFLICSHILMLDSTILFTWTWKGYVSPHGPLSWRWKILTFLVMVFSFPSGAIFY-IRHN----VYCEPG--AY 244 (296)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCCcceeehhhHHHHHHHHHHHHHHHH-HHhh----hhhhhh--HH
Confidence 46666666666655556788889999999999999888874422 222233333333222 1211 344443 57
Q ss_pred HHHHHHHHHHHHHH
Q 026643 81 EALVIAKFLALLYS 94 (235)
Q Consensus 81 EA~viy~F~~Ll~~ 94 (235)
+.++++.+-.-.++
T Consensus 245 ~~fAi~ey~sV~~n 258 (296)
T KOG3979|consen 245 TLFAILEYSSVFLN 258 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776555444
No 4
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=37.70 E-value=1.6e+02 Score=26.73 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhHhHHHHHHHHHhh
Q 026643 3 PARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLI 61 (235)
Q Consensus 3 ~~~~~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~ 61 (235)
.++.++..-|+..++.+++-.....|=..|=.-|+.+|..+.|..-+|-.+..+++++-
T Consensus 161 ~~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~~~lp~~~~P~l~I~lAP~~~~~~a~l~~~ 219 (324)
T PRK10764 161 YHDAGLLFLGAGVFSWLSLEPVILQRLRSSGELPTALRPSLGIQLAPAFVGCSAYLSVN 219 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhHHHHHHHHHHHc
Confidence 35667776676666666555444444446666789999999999999999999999985
No 5
>COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]
Probab=34.14 E-value=1.8e+02 Score=25.45 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=47.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhHhHHHHHHHHHhhc
Q 026643 2 NPARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLID 62 (235)
Q Consensus 2 ~~~~~~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~~ 62 (235)
|..|=.++...+.+.+.+.+|...| .+-|..|..++..+|+-.+++..+-.++...+.
T Consensus 111 n~GqKl~fw~~~l~~~~l~iTGivm---w~~y~~~~~~i~~~r~s~l~h~~~a~~l~~~~~ 168 (218)
T COG2864 111 NAGQKLLFWTAILAIVLLLITGIVI---WRPYFAPYFSIPLLRLSLLLHAFAAVILIFIII 168 (218)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH---HhhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777778888888888 488999999999999999999999888877764
No 6
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=31.85 E-value=67 Score=29.40 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHhh
Q 026643 9 MAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILM 48 (235)
Q Consensus 9 ~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~m 48 (235)
=+||+|.+++.++..+. .+|-.++.+|+.|-...|++++
T Consensus 221 Kaa~~~l~~~wl~i~~S-L~hSi~~Yk~r~rg~~~~~~~~ 259 (296)
T PF10361_consen 221 KAASFFLVICWLIIVYS-LRHSIYHYKPRNRGRFNRIIFL 259 (296)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhheeccCCccchhhhHHH
Confidence 35566655555554444 5888888888777777776655
No 7
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=30.73 E-value=67 Score=23.36 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=19.3
Q ss_pred hhhHHHHHHhhHhHHHHHHHHHhh
Q 026643 38 EQKAIIIIILMAPIYAIDSYVGLI 61 (235)
Q Consensus 38 ~Qr~IiRIl~mvPiYai~S~lsl~ 61 (235)
.+....|+++|+|.+-+.+..+..
T Consensus 2 r~~~~~R~l~mi~~~ivl~~~~~~ 25 (80)
T PF14333_consen 2 REAVWLRLLLMIPFAIVLSLASIV 25 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999998877776654
No 8
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=29.14 E-value=39 Score=25.37 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchh
Q 026643 10 AATVCVMLTTHFSTQLLSEHFLSWKKPKEQ 39 (235)
Q Consensus 10 ~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Q 39 (235)
.+|+.++++.++..+++...+.+|-+|+..
T Consensus 21 ~Gg~iSi~~~~~~~~L~~~E~~~y~~~~~~ 50 (96)
T PF13850_consen 21 SGGIISIITIVLIVILFISELYSYLSGEIK 50 (96)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHccccee
Confidence 467888899999999999999999999654
No 9
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=28.98 E-value=2.3e+02 Score=25.34 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhHhHHHHHHHHHhh
Q 026643 3 PARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLI 61 (235)
Q Consensus 3 ~~~~~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~ 61 (235)
.+..+...-|+...+.+++......|...|-..|++++.-..|..-+|-.+..+++++-
T Consensus 169 ~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l~ 227 (330)
T PF03595_consen 169 IIVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSLG 227 (330)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHhc
Confidence 35666666677777777777777888888877888999999999999999999999986
No 10
>PF04544 Herpes_UL20: Herpesvirus egress protein UL20; InterPro: IPR007629 UL20 is predicted to be a transmembrane protein with multiple membrane spans. It is involved in the trans-cellular transport of enveloped virions, and is therefore important for viral egress. However, UL20 operates in different cellular compartments and different stages of egress in Suid herpesvirus 1 (Pseudorabies virus) and herpes simplex virus. This is thought to be due to differences in egress pathways between these two viruses [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=26.53 E-value=3.8e+02 Score=22.79 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=43.0
Q ss_pred HHHhhhhhhhhhHhHHHHHHHHHH-HHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCchhHHHH
Q 026643 136 KLLKDWTWQFVVIRPVCSILMIAL-QLLGLYSNWISWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLSKFLCI 211 (235)
Q Consensus 136 ~~~k~~vlQy~iikPl~sii~iil-~~~G~Y~~~~~~~~~ii~niS~~~Aly~L~~Fy~~~k~~L~~~~P~~KFl~i 211 (235)
+..-...+-..++||++.++-..- ..+|.+. +......+..+...--+......|+..|.|+-|.++..|++.-
T Consensus 24 ~~vv~f~~Sal~lKPlCCl~f~~Yy~~tg~~~--~~~~~~~~T~~yY~~l~l~~~~~Y~NIk~DrLPL~~~qq~~~g 98 (179)
T PF04544_consen 24 KYVVFFWISALVLKPLCCLIFLWYYRCTGDSR--FFICGLAITAAYYMRLALMAFFLYRNIKRDRLPLSTPQQWILG 98 (179)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 333355667788999998665432 1223221 1111122223332233345778899999999999998887653
No 11
>PF07146 DUF1389: Protein of unknown function (DUF1389); InterPro: IPR010792 This family consists of several hypothetical bacterial proteins, which seem to be specific to Chlamydia pneumoniae (Chlamydophila pneumoniae). Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=26.21 E-value=85 Score=28.98 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Q 026643 5 RVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKE 38 (235)
Q Consensus 5 ~~~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~ 38 (235)
.++.++||+++.+|.+|...-+.++..+|..|++
T Consensus 3 ~I~~iis~~l~~i~~~i~~~~~~~~~~~~~~~k~ 36 (314)
T PF07146_consen 3 PIGLIISLILGGIALAILLFTIIAEIKKYSQPKN 36 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 3678999999999999999999999997776644
No 12
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=24.62 E-value=1.1e+02 Score=22.61 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 026643 15 VMLTTHFSTQLLSEHFLSWKKPKEQKAIIII 45 (235)
Q Consensus 15 ~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRI 45 (235)
+++-+.+-.|.+ -+..|.+-.+||+|-|.
T Consensus 14 v~~iiaIvvW~i--v~ieYrk~~rqrkId~l 42 (81)
T PF00558_consen 14 VALIIAIVVWTI--VYIEYRKIKRQRKIDRL 42 (81)
T ss_dssp HHHHHHHHHHHH--H------------CHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhHHHH
Confidence 333334455555 57889999999988764
No 13
>PRK11056 hypothetical protein; Provisional
Probab=24.05 E-value=3.6e+02 Score=21.45 Aligned_cols=42 Identities=7% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhHhHHHH
Q 026643 13 VCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAI 54 (235)
Q Consensus 13 ~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai 54 (235)
+|-++|+++|.|-.+|+..|.+.|+.=-.+..-.+.+=+.+-
T Consensus 38 iFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~y 79 (120)
T PRK11056 38 IFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLY 79 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 466789999999999999999999875444444444433333
No 14
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=24.00 E-value=2.4e+02 Score=26.99 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cchhhHHHHHHhhHhHHHHHHHHH
Q 026643 7 TFMAATVCVMLTTHFSTQLLSEHFLSWKK-PKEQKAIIIIILMAPIYAIDSYVG 59 (235)
Q Consensus 7 ~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~-P~~Qr~IiRIl~mvPiYai~S~ls 59 (235)
.+..||.....+...|...+.+-..+.+- |+..|.+.|...++|.-.+.-+++
T Consensus 293 ~llasg~~s~~~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g 346 (416)
T COG1914 293 ALLAAGLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFG 346 (416)
T ss_pred HHHHhHHHHHHHHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHc
Confidence 45566766677777888888899999884 566777899999999888888877
No 15
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=22.49 E-value=91 Score=20.43 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCc
Q 026643 16 MLTTHFSTQLLSEHFLSWKKP 36 (235)
Q Consensus 16 ~l~~~iS~~~I~~Hl~~y~~P 36 (235)
.+++..-.-=|..||.+|.+.
T Consensus 23 f~~~L~PagWVLshL~~YKk~ 43 (44)
T PF02285_consen 23 FVTFLGPAGWVLSHLESYKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHTHHHHHT-
T ss_pred HHHHHhhHHHHHHHHHHhhcc
Confidence 344444434466999999775
No 16
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=21.42 E-value=4.2e+02 Score=21.00 Aligned_cols=35 Identities=9% Similarity=0.257 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHh
Q 026643 13 VCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIIL 47 (235)
Q Consensus 13 ~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~ 47 (235)
+|-++|+++|.+-.+|+..|.+.|+.=-.+..-.+
T Consensus 38 iFPlIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acF 72 (117)
T PF07226_consen 38 IFPLIALVLAVYCLYQRYLNHPMPEGTPKLALACF 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 46688999999999999999999976433333333
No 17
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=21.06 E-value=50 Score=19.83 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=14.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 026643 1 MNPARVTFMAATVCVMLTTHFS 22 (235)
Q Consensus 1 ~~~~~~~~~~ag~~~~l~~~iS 22 (235)
|..|.=+|.+|-+|+++..-+|
T Consensus 1 Mrk~Lg~~~lAi~c~LL~s~Ls 22 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLFSHLS 22 (30)
T ss_dssp --SS-SSHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHhh
Confidence 5667777888889888765443
Done!