Query 026643
Match_columns 235
No_of_seqs 108 out of 463
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 18:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zoq_C CREB-binding protein, i 23.8 43 0.0015 21.2 1.9 27 23-49 3-29 (47)
2 1kbh_B CREB-binding protein, n 22.2 68 0.0023 21.2 2.7 26 23-48 10-35 (59)
3 3m73_A Tellurite resistance pr 19.8 2.2E+02 0.0074 24.4 6.4 57 4-61 163-219 (314)
4 1zl8_A LIN-7; heterodimer, alp 19.8 58 0.002 21.1 2.0 12 72-83 41-52 (53)
5 1v54_M VIIIB, IX, cytochrome C 17.3 91 0.0031 19.7 2.4 27 11-37 18-44 (46)
6 2y69_M Cytochrome C oxidase po 13.4 1.7E+02 0.0057 20.1 3.1 27 11-37 42-68 (70)
7 1z65_A PRPLP, prion-like prote 12.7 72 0.0025 18.3 0.9 20 1-20 1-20 (30)
8 4htp_A DNA ligase 4; helical d 11.5 1.1E+02 0.0037 25.5 2.1 21 27-47 171-191 (240)
9 1pi7_A VPU protein, U ORF prot 8.3 2.4E+02 0.0081 16.8 2.2 36 1-40 1-36 (36)
10 3am6_A Rhodopsin-2, AR2; seven 6.9 9.5E+02 0.033 19.4 6.4 29 33-61 32-60 (229)
No 1
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=23.83 E-value=43 Score=21.19 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=21.3
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhH
Q 026643 23 TQLLSEHFLSWKKPKEQKAIIIIILMA 49 (235)
Q Consensus 23 ~~~I~~Hl~~y~~P~~Qr~IiRIl~mv 49 (235)
+..+.+-+++=+.|+.|-++++|+=-=
T Consensus 3 LqqLl~tlksp~sp~qqqqvl~ILksn 29 (47)
T 1zoq_C 3 LQDLLRTLKSPSSPQQQQQVLNILKSN 29 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHcC
Confidence 345677888888999999999997433
No 2
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=22.18 E-value=68 Score=21.24 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhh
Q 026643 23 TQLLSEHFLSWKKPKEQKAIIIIILM 48 (235)
Q Consensus 23 ~~~I~~Hl~~y~~P~~Qr~IiRIl~m 48 (235)
+..+.+-+++=+.|+.|-++++|+=-
T Consensus 10 LqqLl~tlksp~speqqqqvl~ILks 35 (59)
T 1kbh_B 10 LQDLLRTLKSPSSPQQQQQVLNILKS 35 (59)
T ss_dssp HHHHHHHHHSCTTTTCSTHHHHHHTT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45678899999999999999999743
No 3
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=19.83 E-value=2.2e+02 Score=24.43 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhHhHHHHHHHHHhh
Q 026643 4 ARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKAIIIIILMAPIYAIDSYVGLI 61 (235)
Q Consensus 4 ~~~~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPiYai~S~lsl~ 61 (235)
|+.+...=|+...+++++-....+|-.. -.-|++.|.-+.|..-+|-.+..+++++.
T Consensus 163 ~~~~~~~~~~G~~~~l~l~~i~~~Rl~~-~~lp~~~~P~~~I~~aP~~~~~~a~l~l~ 219 (314)
T 3m73_A 163 HDLGYLFFGAGMIAWIIFEPVLLQHLRI-SSLEPQFRATMGIVLAPAFVCVSAYLSIN 219 (314)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHHHHHHHH-TCCCHHHHGGGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCChhhhhHHHHHHhhHHHHHHHHHHHc
Confidence 3444444455555555554444555555 45678899999999999999999999985
No 4
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=19.82 E-value=58 Score=21.14 Aligned_cols=12 Identities=42% Similarity=0.910 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 026643 72 FLESVKECYEAL 83 (235)
Q Consensus 72 y~~~ird~YEA~ 83 (235)
|++.+||+||-.
T Consensus 41 F~~aVREVYEhv 52 (53)
T 1zl8_A 41 FFGAVREVYETV 52 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 799999999963
No 5
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=17.34 E-value=91 Score=19.71 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 026643 11 ATVCVMLTTHFSTQLLSEHFLSWKKPK 37 (235)
Q Consensus 11 ag~~~~l~~~iS~~~I~~Hl~~y~~P~ 37 (235)
+.....+++.+---=|..|+.+|.+.+
T Consensus 18 gl~v~f~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 18 GLSVTFLSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHTC-
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 333334455554445679999998873
No 6
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=13.40 E-value=1.7e+02 Score=20.13 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 026643 11 ATVCVMLTTHFSTQLLSEHFLSWKKPK 37 (235)
Q Consensus 11 ag~~~~l~~~iS~~~I~~Hl~~y~~P~ 37 (235)
++....+++.+---=|..|+.+|.+.+
T Consensus 42 gltv~f~~~L~PagWVLshLe~YKk~e 68 (70)
T 2y69_M 42 GLSVTFLSFLLPAGWVLYHLDNYKKSS 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHSCC-
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 333334455554444679999999873
No 7
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=12.72 E-value=72 Score=18.28 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=13.9
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 026643 1 MNPARVTFMAATVCVMLTTH 20 (235)
Q Consensus 1 ~~~~~~~~~~ag~~~~l~~~ 20 (235)
|.-|.=+|.+|-+|+++..-
T Consensus 1 MrkhLG~~wlai~c~LLfs~ 20 (30)
T 1z65_A 1 MKNRLGTWWVAILCMLLASH 20 (30)
T ss_dssp CCSSCSSHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHHHHhh
Confidence 55666678888888876543
No 8
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=11.48 E-value=1.1e+02 Score=25.55 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=15.7
Q ss_pred HHHhhcCCCcchhhHHHHHHh
Q 026643 27 SEHFLSWKKPKEQKAIIIIIL 47 (235)
Q Consensus 27 ~~Hl~~y~~P~~Qr~IiRIl~ 47 (235)
.+.+..=..|+|||+++||+.
T Consensus 171 l~~Ll~~~t~~E~k~liRiil 191 (240)
T 4htp_A 171 LLQLITQSSALEQKWLIRMII 191 (240)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHh
Confidence 344444467999999999974
No 9
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=8.31 E-value=2.4e+02 Score=16.77 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=15.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhh
Q 026643 1 MNPARVTFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQK 40 (235)
Q Consensus 1 ~~~~~~~~~~ag~~~~l~~~iS~~~I~~Hl~~y~~P~~Qr 40 (235)
|++-++ .+.|..+++-+.+-.|.+. +..|.+-.+||
T Consensus 1 M~~l~i--~ivalivalIiaIVVWtiv--~ieYrk~~kQ~ 36 (36)
T 1pi7_A 1 MQPIQI--AIVALVVAIIIAIVVWSIV--IIEGRGGKKKK 36 (36)
T ss_pred Cchhhh--HHHHHHHHHHHHHHHHHHH--HHHHHHHHhcC
Confidence 444444 2233333333334455543 44454444443
No 10
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET: RET CLR; 3.20A {Acetabularia acetabulum}
Probab=6.92 E-value=9.5e+02 Score=19.40 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=20.7
Q ss_pred CCCcchhhHHHHHHhhHhHHHHHHHHHhh
Q 026643 33 WKKPKEQKAIIIIILMAPIYAIDSYVGLI 61 (235)
Q Consensus 33 y~~P~~Qr~IiRIl~mvPiYai~S~lsl~ 61 (235)
.+.|.+.|...-+..+++..|-.+...+.
T Consensus 32 ~~~~~~~r~~~~~~~lvt~iaa~~Y~~Ma 60 (229)
T 3am6_A 32 HFRPSELKSAYYINIAICTIAATAYYAMA 60 (229)
T ss_dssp GGCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcceehhHHHHHHHHHHHHHHHHHH
Confidence 37787888888888888887777766665
Done!