Query 026643
Match_columns 235
No_of_seqs 108 out of 463
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 18:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026643.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026643hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 25.9 18 0.0013 21.8 2.0 12 72-83 38-49 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 21.2 24 0.0018 21.7 2.0 12 72-83 39-50 (57)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 14.4 83 0.006 15.9 3.4 17 181-197 9-25 (26)
4 d1zoqc1 a.153.1.1 (C:2065-2111 14.4 45 0.0033 19.4 1.9 27 24-50 4-30 (47)
5 d1eysh2 f.23.10.1 (H:7-43) Pho 13.3 41 0.003 18.9 1.4 18 83-100 11-28 (37)
6 d1v54m_ f.23.7.1 (M:) Mitochon 13.2 63 0.0046 18.7 2.4 23 13-35 20-42 (43)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 7.6 1.6E+02 0.012 16.0 2.6 19 1-19 1-19 (36)
8 d1x9na1 a.235.1.1 (A:262-533) 6.2 1.1E+02 0.008 24.0 2.0 20 27-47 167-186 (272)
9 d1rkla_ f.23.30.1 (A:) Oligosa 5.5 2.5E+02 0.018 15.0 3.8 21 182-202 15-35 (36)
10 d2fug21 c.47.1.21 (2:3-180) NA 5.2 3.1E+02 0.022 19.8 4.1 40 23-62 28-69 (178)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=25.90 E-value=18 Score=21.78 Aligned_cols=12 Identities=42% Similarity=0.910 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 026643 72 FLESVKECYEAL 83 (235)
Q Consensus 72 y~~~ird~YEA~ 83 (235)
|++.+||+||-.
T Consensus 38 F~~avREVYe~v 49 (50)
T d1zl8a1 38 FFGAVREVYETV 49 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 899999999953
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.17 E-value=24 Score=21.70 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 026643 72 FLESVKECYEAL 83 (235)
Q Consensus 72 y~~~ird~YEA~ 83 (235)
|++.+||+||-.
T Consensus 39 F~~avREVYehv 50 (57)
T d1y74a1 39 FCSAIREVYEQL 50 (57)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999963
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.43 E-value=83 Score=15.93 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhHh
Q 026643 181 VSLALYSLVIFYHVFAK 197 (235)
Q Consensus 181 ~~~Aly~L~~Fy~~~k~ 197 (235)
..++..+++++|.++.+
T Consensus 9 ~fw~ffalli~ylqten 25 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 46788899999988764
No 4
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.36 E-value=45 Score=19.36 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred HHHHHHhhcCCCcchhhHHHHHHhhHh
Q 026643 24 QLLSEHFLSWKKPKEQKAIIIIILMAP 50 (235)
Q Consensus 24 ~~I~~Hl~~y~~P~~Qr~IiRIl~mvP 50 (235)
-...+-+++=+.|+.|.++.-|+=-=|
T Consensus 4 q~Ll~tLrsP~sP~QQqQvL~ILksNP 30 (47)
T d1zoqc1 4 QDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 456677888889999999998874433
No 5
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=13.27 E-value=41 Score=18.85 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCcc
Q 026643 83 LVIAKFLALLYSYLNISI 100 (235)
Q Consensus 83 ~viy~F~~Ll~~ylgg~~ 100 (235)
++.+.||..++-|+..|+
T Consensus 11 y~Fw~FFagLi~YL~rE~ 28 (37)
T d1eysh2 11 WAFWLFFFGLIIYLRRED 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 456678899999986553
No 6
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.19 E-value=63 Score=18.68 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Q 026643 13 VCVMLTTHFSTQLLSEHFLSWKK 35 (235)
Q Consensus 13 ~~~~l~~~iS~~~I~~Hl~~y~~ 35 (235)
..+.++++.-.-=|..|+.+|.+
T Consensus 20 t~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 20 SVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHccHHHHHHHHHHhcc
Confidence 33344555555556799999865
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.62 E-value=1.6e+02 Score=16.03 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=15.3
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 026643 1 MNPARVTFMAATVCVMLTT 19 (235)
Q Consensus 1 ~~~~~~~~~~ag~~~~l~~ 19 (235)
|+...++++.+..|.++-+
T Consensus 1 MevN~Lg~iAt~LFilvPt 19 (36)
T d2axtm1 1 MEVNQLGLIATALFVLVPS 19 (36)
T ss_dssp CCCCTTHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 7888899999888877653
No 8
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.23 E-value=1.1e+02 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=14.3
Q ss_pred HHHhhcCCCcchhhHHHHHHh
Q 026643 27 SEHFLSWKKPKEQKAIIIIIL 47 (235)
Q Consensus 27 ~~Hl~~y~~P~~Qr~IiRIl~ 47 (235)
.+-+.+ .+|.|+|+++|++.
T Consensus 167 ~~Ll~~-~~~~E~kyliR~l~ 186 (272)
T d1x9na1 167 KGLFVA-CRHSEARFIARSLS 186 (272)
T ss_dssp HHHHHH-CCSTHHHHHHHHHT
T ss_pred HHHHHh-CCHHHHHHHHHHHH
Confidence 334444 57899999999864
No 9
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.47 E-value=2.5e+02 Score=14.96 Aligned_cols=21 Identities=19% Similarity=0.705 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhHhccCCC
Q 026643 182 SLALYSLVIFYHVFAKELAPH 202 (235)
Q Consensus 182 ~~Aly~L~~Fy~~~k~~L~~~ 202 (235)
.+.|..|++.|+++.+.++|.
T Consensus 15 gi~mmtliviyh~~~st~s~k 35 (36)
T d1rkla_ 15 GIVMMTLIVIYHAVDSTMSPK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTSCCCCC
T ss_pred hHHHHHHHHHHhhhccccCCC
Confidence 456778999999998887764
No 10
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=5.22 E-value=3.1e+02 Score=19.82 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhHhH--HHHHHHHHhhc
Q 026643 23 TQLLSEHFLSWKKPKEQKAIIIIILMAPI--YAIDSYVGLID 62 (235)
Q Consensus 23 ~~~I~~Hl~~y~~P~~Qr~IiRIl~mvPi--Yai~S~lsl~~ 62 (235)
.-+..|+-.+|-.|+.++.|-+.+-|.|. |++.||-+.+.
T Consensus 28 ~L~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f~ 69 (178)
T d2fug21 28 LLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQ 69 (178)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHCCCHHHHHHHHHhcchhc
Confidence 33444666677777788888888887774 88888877764
Done!