Query 026644
Match_columns 235
No_of_seqs 207 out of 1075
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:44:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2332 Ferritin [Inorganic io 100.0 1.6E-41 3.4E-46 287.7 10.6 144 82-233 4-147 (178)
2 PRK15022 ferritin-like protein 100.0 2.3E-39 5E-44 273.2 17.0 133 90-234 1-133 (167)
3 cd00904 Ferritin Ferritin iron 100.0 1.4E-37 3.1E-42 259.2 16.4 135 92-234 1-135 (160)
4 PRK10304 ferritin; Provisional 100.0 5.8E-37 1.3E-41 257.9 17.0 133 90-234 1-133 (165)
5 cd01056 Euk_Ferritin eukaryoti 100.0 6.4E-35 1.4E-39 242.9 17.1 134 92-234 1-135 (161)
6 COG1528 Ftn Ferritin-like prot 100.0 2.2E-34 4.9E-39 241.6 16.8 131 91-233 2-132 (167)
7 cd01055 Nonheme_Ferritin nonhe 100.0 8.7E-30 1.9E-34 209.2 17.2 129 92-232 1-129 (156)
8 PRK10635 bacterioferritin; Pro 99.9 1.4E-24 3E-29 181.7 16.6 125 90-227 2-126 (158)
9 TIGR00754 bfr bacterioferritin 99.9 1.6E-23 3.5E-28 173.3 17.0 126 92-230 4-129 (157)
10 cd00907 Bacterioferritin Bacte 99.9 2.3E-21 5E-26 158.0 17.1 126 92-230 3-128 (153)
11 PF00210 Ferritin: Ferritin-li 99.9 1.6E-21 3.4E-26 154.3 14.8 124 96-232 1-129 (142)
12 cd01041 Rubrerythrin Rubreryth 99.8 1.2E-19 2.6E-24 146.5 14.7 117 95-227 2-119 (134)
13 COG2193 Bfr Bacterioferritin ( 99.8 7E-19 1.5E-23 145.4 16.2 132 90-233 2-142 (157)
14 cd01052 DPSL DPS-like protein, 99.8 3E-18 6.4E-23 139.0 16.6 131 92-232 4-141 (148)
15 cd01046 Rubrerythrin_like rubr 99.7 8.5E-17 1.8E-21 129.0 13.3 102 95-222 2-103 (123)
16 PRK13456 DNA protection protei 99.3 4.6E-11 1E-15 102.6 15.9 128 92-227 18-150 (186)
17 cd01043 DPS DPS protein, ferri 99.1 1.8E-09 4E-14 87.1 13.5 121 98-230 2-130 (139)
18 cd00657 Ferritin_like Ferritin 99.0 3.8E-08 8.2E-13 73.7 14.2 114 98-228 2-120 (130)
19 cd07908 Mn_catalase_like Manga 98.9 1.4E-07 3.1E-12 77.6 16.3 127 91-227 10-143 (154)
20 cd01045 Ferritin_like_AB Uncha 98.5 2.9E-06 6.2E-11 66.2 11.6 113 98-222 2-123 (139)
21 cd01051 Mn_catalase Manganese 98.2 0.00011 2.5E-09 61.5 16.3 115 92-222 18-136 (156)
22 PF02915 Rubrerythrin: Rubrery 98.2 3.7E-05 7.9E-10 60.0 12.6 120 97-228 1-127 (137)
23 PRK09448 DNA starvation/statio 98.2 0.00011 2.4E-09 61.8 15.4 123 93-231 21-152 (162)
24 COG0783 Dps DNA-binding ferrit 97.6 0.0038 8.3E-08 52.6 15.0 126 93-231 14-147 (156)
25 COG2406 Protein distantly rela 97.5 0.0086 1.9E-07 50.3 15.1 129 93-229 16-149 (172)
26 COG1633 Uncharacterized conser 97.5 0.0029 6.3E-08 54.1 12.7 106 92-205 22-140 (176)
27 cd01044 Ferritin_CCC1_N Ferrit 97.2 0.0019 4.1E-08 51.5 8.4 97 98-202 2-100 (125)
28 COG1592 Rubrerythrin [Energy p 96.8 0.033 7.1E-07 47.5 12.4 105 94-221 4-109 (166)
29 PF13668 Ferritin_2: Ferritin- 96.2 0.19 4.2E-06 40.1 12.9 112 97-221 4-118 (137)
30 PRK12775 putative trifunctiona 95.9 0.19 4.2E-06 53.3 14.6 115 93-221 859-978 (1006)
31 cd01042 DMQH Demethoxyubiquino 95.9 0.14 3.1E-06 43.5 11.1 112 105-227 11-126 (165)
32 TIGR02284 conserved hypothetic 95.6 0.31 6.7E-06 39.9 11.8 120 96-229 2-130 (139)
33 PF09537 DUF2383: Domain of un 95.2 0.19 4.1E-06 38.8 8.7 64 94-162 1-64 (111)
34 cd01048 Ferritin_like_AB2 Unch 94.4 2.2 4.7E-05 34.6 13.7 108 97-221 3-118 (135)
35 PF03232 COQ7: Ubiquinone bios 92.7 5.2 0.00011 34.2 13.5 125 98-228 6-134 (172)
36 cd01050 Acyl_ACP_Desat Acyl AC 91.7 5.4 0.00012 37.0 13.3 125 90-221 55-185 (297)
37 PF03405 FA_desaturase_2: Fatt 91.7 5.6 0.00012 37.5 13.5 127 89-221 56-191 (330)
38 cd01041 Rubrerythrin Rubreryth 86.9 8.1 0.00018 30.7 9.5 61 92-154 71-132 (134)
39 cd01046 Rubrerythrin_like rubr 86.8 3.7 8.1E-05 32.6 7.4 59 93-153 62-120 (123)
40 PF12902 Ferritin-like: Ferrit 86.6 3.9 8.5E-05 36.3 8.1 61 99-162 1-62 (227)
41 PF04305 DUF455: Protein of un 83.6 12 0.00027 33.8 10.0 125 94-227 66-194 (253)
42 cd01045 Ferritin_like_AB Uncha 80.8 9.1 0.0002 29.2 7.1 56 91-151 83-138 (139)
43 PF14530 DUF4439: Domain of un 79.7 32 0.00069 28.1 13.4 106 98-221 1-106 (131)
44 cd01055 Nonheme_Ferritin nonhe 79.4 12 0.00026 30.2 7.7 59 93-153 79-137 (156)
45 cd07910 MiaE MiaE tRNA-modifyi 77.7 46 0.001 28.8 14.8 69 94-168 18-86 (180)
46 PF02915 Rubrerythrin: Rubrery 77.6 16 0.00036 27.8 7.7 52 94-150 84-135 (137)
47 cd07908 Mn_catalase_like Manga 76.6 14 0.00031 29.9 7.5 55 92-151 99-153 (154)
48 cd00657 Ferritin_like Ferritin 74.0 22 0.00047 25.6 7.2 54 93-151 76-129 (130)
49 PF07875 Coat_F: Coat F domain 70.9 33 0.00071 24.0 8.4 55 98-157 5-59 (64)
50 cd00907 Bacterioferritin Bacte 70.2 53 0.0012 26.1 9.4 58 93-152 80-137 (153)
51 COG1633 Uncharacterized conser 67.2 47 0.001 28.3 8.7 63 88-155 107-169 (176)
52 PF05974 DUF892: Domain of unk 65.1 79 0.0017 26.2 14.2 125 93-228 4-140 (159)
53 COG3546 Mn-containing catalase 62.4 78 0.0017 29.2 9.5 119 91-221 17-169 (277)
54 PF05067 Mn_catalase: Manganes 58.7 1.5E+02 0.0033 27.4 11.6 120 91-221 17-174 (283)
55 PRK12775 putative trifunctiona 58.0 42 0.00091 36.0 8.1 57 95-155 942-998 (1006)
56 PRK10635 bacterioferritin; Pro 57.6 93 0.002 25.9 8.6 61 91-153 79-139 (158)
57 cd07648 F-BAR_FCHO The F-BAR ( 50.4 56 0.0012 29.0 6.6 33 127-159 21-53 (261)
58 cd01051 Mn_catalase Manganese 49.1 1.4E+02 0.0031 24.8 8.4 60 91-155 96-155 (156)
59 PF11860 DUF3380: Protein of u 48.4 40 0.00087 28.9 5.1 59 96-156 77-135 (175)
60 PF00210 Ferritin: Ferritin-li 48.1 1.2E+02 0.0026 23.0 8.0 60 93-154 79-138 (142)
61 cd07610 FCH_F-BAR The Extended 46.2 78 0.0017 26.1 6.5 35 126-160 15-49 (191)
62 cd07647 F-BAR_PSTPIP The F-BAR 45.8 57 0.0012 28.7 5.9 30 126-155 20-49 (239)
63 cd07674 F-BAR_FCHO1 The F-BAR 44.9 68 0.0015 28.7 6.3 30 127-156 21-50 (261)
64 cd01052 DPSL DPS-like protein, 44.8 99 0.0022 24.3 6.7 47 178-228 6-52 (148)
65 COG2941 CAT5 Ubiquinone biosyn 44.1 2.3E+02 0.0049 25.0 13.5 109 105-229 52-168 (204)
66 PRK13456 DNA protection protei 42.6 1.7E+02 0.0037 25.5 8.1 57 94-153 107-163 (186)
67 PLN00179 acyl- [acyl-carrier p 40.7 1.1E+02 0.0024 29.6 7.2 125 91-221 115-248 (390)
68 cd01044 Ferritin_CCC1_N Ferrit 38.1 1.7E+02 0.0037 22.8 7.0 47 96-153 78-124 (125)
69 cd07652 F-BAR_Rgd1 The F-BAR ( 37.8 1.3E+02 0.0028 26.6 6.9 33 127-159 21-53 (234)
70 cd07673 F-BAR_FCHO2 The F-BAR 36.3 1.2E+02 0.0026 27.4 6.5 33 127-159 28-60 (269)
71 PRK10304 ferritin; Provisional 35.6 2.5E+02 0.0054 23.5 7.9 65 92-156 80-145 (165)
72 cd07651 F-BAR_PombeCdc15_like 34.9 1.1E+02 0.0023 26.8 5.8 33 126-158 20-52 (236)
73 smart00055 FCH Fes/CIP4 homolo 33.1 1.8E+02 0.004 20.8 7.1 28 127-154 25-52 (87)
74 TIGR00754 bfr bacterioferritin 30.6 2.9E+02 0.0063 22.3 9.7 60 92-153 80-139 (157)
75 PF00611 FCH: Fes/CIP4, and EF 30.4 1E+02 0.0022 22.1 4.2 31 126-156 24-54 (91)
76 PF09083 DUF1923: Domain of un 29.2 24 0.00052 25.0 0.6 22 41-62 17-38 (64)
77 PF10398 DUF2443: Protein of u 29.1 2.5E+02 0.0054 21.1 6.9 58 98-155 14-72 (79)
78 cd06891 PX_Vps17p The phosphoi 27.1 2.3E+02 0.005 23.5 6.2 65 147-222 75-139 (140)
79 PF10097 DUF2335: Predicted me 26.0 1.5E+02 0.0033 20.2 4.1 29 126-154 12-40 (50)
80 cd07649 F-BAR_GAS7 The F-BAR ( 24.7 2.1E+02 0.0046 25.3 6.0 32 126-157 20-51 (233)
81 PF11583 AurF: P-aminobenzoate 23.5 2.9E+02 0.0063 24.8 6.8 93 128-227 112-213 (304)
82 PF06744 DUF1215: Protein of u 23.2 3.5E+02 0.0075 21.2 6.4 76 91-166 27-106 (125)
83 PRK13966 nrdF2 ribonucleotide- 20.7 2.2E+02 0.0048 26.4 5.5 90 119-228 176-265 (324)
84 cd07678 F-BAR_FCHSD1 The F-BAR 20.7 5.5E+02 0.012 23.4 7.9 89 113-202 7-97 (263)
85 cd07653 F-BAR_CIP4-like The F- 20.7 4.3E+02 0.0093 22.9 7.1 45 115-159 9-53 (251)
No 1
>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=287.69 Aligned_cols=144 Identities=51% Similarity=0.690 Sum_probs=139.2
Q ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee
Q 026644 82 PQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL 161 (235)
Q Consensus 82 ~~~s~~r~~~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l 161 (235)
.+.+++|++++++|+.+||.|||.|+++||+|++|++||+||+++++||++||.++|+|||+||++||+|+|+|||+|++
T Consensus 4 ~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~l 83 (178)
T KOG2332|consen 4 KMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIEL 83 (178)
T ss_pred cchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhhhc
Q 026644 162 QSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFRNA 233 (235)
Q Consensus 162 ~~I~~p~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~~~ 233 (235)
++|.+|. ..+|++.+++|+.||.+||.++++|++||.+|.+. +|++++||||++||.|||+.|.
T Consensus 84 ~~i~~P~----~~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~k----nD~hL~dflE~~fL~eQVksIk 147 (178)
T KOG2332|consen 84 QDIKKPE----LDEWGKGLEALEAALHLEKNVNQSLLELHSLATKK----NDPHLCDFLESHFLNEQVKSIK 147 (178)
T ss_pred ccccccc----cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CChHHHHHHHHhhhHHHHHHHH
Confidence 9999994 47899999999999999999999999999999999 9999999999999999999884
No 2
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=273.23 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=126.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 026644 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (235)
Q Consensus 90 ~~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~ 169 (235)
+.+++++.+||+|||.|++|||+|++||+||++ .+|||||+||+.+|+|||+||+||++||++|||+|.+++|++|+.
T Consensus 1 m~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~~--~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~ 78 (167)
T PRK15022 1 MATAGMLLKLNSQMNLEFYASNLYLHLSEWCSE--QSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGE 78 (167)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCcc
Confidence 367899999999999999999999999999986 699999999999999999999999999999999999999999975
Q ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhhhcC
Q 026644 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFRNAN 234 (235)
Q Consensus 170 ~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~~~~ 234 (235)
+ |++++++|+.+|+||+.||+.|++|+++|.++ +|+++++||+ +|+.||+..+++
T Consensus 79 ~-----~~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~----~D~~t~~FL~-wfv~EQ~eEe~~ 133 (167)
T PRK15022 79 K-----LNSLEELFQKTLEEYEQRSSTLAQLADEAKAL----NDDSTLNFLR-DLEKEQQHDGLL 133 (167)
T ss_pred c-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHhHHHHHH-HHHHHHHHHHHH
Confidence 5 56899999999999999999999999999999 9999999998 999999998754
No 3
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=1.4e-37 Score=259.22 Aligned_cols=135 Identities=50% Similarity=0.728 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccc
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f 171 (235)
+++|+++||+|||.|+++||+|++||+||++++|||+|||+||+.+|+|||+||++|++||++|||+|+++.|++|..
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~-- 78 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPS-- 78 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcc--
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhhhcC
Q 026644 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFRNAN 234 (235)
Q Consensus 172 ~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~~~~ 234 (235)
.+|++++++|+.+|++|+.+++.|++++++|.++ +|+.+++||+.+|++||++.+++
T Consensus 79 --~~~~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~----~D~~t~~fl~~~fi~eQ~ee~~~ 135 (160)
T cd00904 79 --DEWGGTLDAMEAALKLEKFVNQALLDLHELASEE----KDPHLCDFLESHFLDEQVKEIKQ 135 (160)
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHhhchhhHHHHHHHHH
Confidence 2456899999999999999999999999999999 99999999996699999998764
No 4
>PRK10304 ferritin; Provisional
Probab=100.00 E-value=5.8e-37 Score=257.91 Aligned_cols=133 Identities=20% Similarity=0.296 Sum_probs=126.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 026644 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (235)
Q Consensus 90 ~~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~ 169 (235)
+++++++++||+|||.|++|+|+|++||+||+. +||+|||+||+.+|.|||+||+||++||++|||+|.+++|+.|..
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~~--~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~ 78 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSY--HTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA 78 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence 468999999999999999999999999999996 899999999999999999999999999999999999999998876
Q ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhhhcC
Q 026644 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFRNAN 234 (235)
Q Consensus 170 ~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~~~~ 234 (235)
+ |+++.++|+.+|++|+.+++.|++++++|.++ +|+.+++||+ +|+.|||+.++.
T Consensus 79 ~-----~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~----~D~~t~~fl~-~fl~EQveEe~~ 133 (165)
T PRK10304 79 E-----YSSLDELFQETYKHEQLITQKINELAHAAMTN----QDYPTFNFLQ-WYVSEQHEEEKL 133 (165)
T ss_pred c-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHhHHHHHH-HHHHHHHHHHHH
Confidence 5 46899999999999999999999999999999 9999999998 999999988763
No 5
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00 E-value=6.4e-35 Score=242.88 Aligned_cols=134 Identities=56% Similarity=0.817 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC-cc
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL-SE 170 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~-~~ 170 (235)
+++|+++||+||+.|++|||+|++||+||++.++|++||++||+.+|+|||+||++|++||+.|||+|++++|++|. .
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~- 79 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKD- 79 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCc-
Confidence 47899999999999999999999999999996679999999999999999999999999999999999999999997 4
Q ss_pred cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhhhcC
Q 026644 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFRNAN 234 (235)
Q Consensus 171 f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~~~~ 234 (235)
+|.++.++|+.||++|+.+++.|++++++|.++ +|+.+.+||+.+|+.||++.+.+
T Consensus 80 ----~~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~----~D~~t~~fl~~~fl~eQ~e~~~~ 135 (161)
T cd01056 80 ----EWGSGLEALELALDLEKLVNQSLLDLHKLASEH----NDPHLADFLESEFLEEQVESIKK 135 (161)
T ss_pred ----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHc----CCHhHHHHHHHHhhHHHHHHHHH
Confidence 356899999999999999999999999999999 99999999997799999998753
No 6
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=241.57 Aligned_cols=131 Identities=28% Similarity=0.406 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc
Q 026644 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170 (235)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~ 170 (235)
.++++.++||+|||.|+++||+|++||+||+. .+|+|+|+||+.||.||+.||+||++|++.||++|.++.|.+|+.+
T Consensus 2 ls~~~~~~LN~Q~N~E~yas~lYl~maa~~~~--~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~ 79 (167)
T COG1528 2 LSEKMIELLNEQMNLEFYASNLYLQMAAWCSS--ESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNK 79 (167)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCccc
Confidence 57899999999999999999999999999996 6999999999999999999999999999999999999999999976
Q ss_pred cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhhhc
Q 026644 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFRNA 233 (235)
Q Consensus 171 f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~~~ 233 (235)
| +++.++|+.+|++|+.||..|++|.++|.++ +|+.+.+||+ ||+.||++.++
T Consensus 80 ~-----~s~~e~f~~tlehEq~vt~~I~~L~~~a~~~----kD~~T~nFLq-Wfv~EQ~eEe~ 132 (167)
T COG1528 80 F-----SSLKELFEKTLEHEQKVTSSINELAEVAREE----KDYATFNFLQ-WFVAEQVEEEK 132 (167)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CchhHHHHHH-HHHHHHHHHHH
Confidence 5 5899999999999999999999999999999 9999999998 99999998765
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=99.97 E-value=8.7e-30 Score=209.19 Aligned_cols=129 Identities=39% Similarity=0.542 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccc
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f 171 (235)
+++|+++||+||+.|+.|+++|++||.||++ +++|||++||+..|+|||+||+++++||++|||.|++++|++|..
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~-- 76 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPS-- 76 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCc--
Confidence 5789999999999999999999999999998 699999999999999999999999999999999999999999864
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhhh
Q 026644 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFRN 232 (235)
Q Consensus 172 ~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~~ 232 (235)
+|+++.++|+.+|++|+.+++.|++++++|.++ +|+.+++||+ +|+.+|+..+
T Consensus 77 ---~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~----~D~~~~~~l~-~~l~~q~e~~ 129 (156)
T cd01055 77 ---EFESLLEVFEAALEHEQKVTESINNLVDLALEE----KDYATFNFLQ-WFVKEQVEEE 129 (156)
T ss_pred ---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHhHHHHHH-HHHHHHHHHH
Confidence 456899999999999999999999999999999 9999999998 8999998765
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.93 E-value=1.4e-24 Score=181.70 Aligned_cols=125 Identities=18% Similarity=0.042 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 026644 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (235)
Q Consensus 90 ~~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~ 169 (235)
+.++++.+.||++++.|+.|+++|+.||.+|+. ||+++++++|+.+|.|||+||++|++||+.+||.|+++++++|..
T Consensus 2 ~~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~~--~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~ 79 (158)
T PRK10635 2 KGDVKIINYLNKLLGNELVAINQYFLHARMFKN--WGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI 79 (158)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 368899999999999999999999999999997 999999999999999999999999999999999999999988876
Q ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHH
Q 026644 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKV 227 (235)
Q Consensus 170 ~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~E 227 (235)
+ .|+.++|+.+|++|+.++..|++++++|.+. +|+.+.++|+ +||.+
T Consensus 80 g------~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~----~D~~s~~ll~-~iL~d 126 (158)
T PRK10635 80 G------EDVEEMLRSDLRLELEGAKDLREAIAYADSV----HDYVSRDMMI-EILAD 126 (158)
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHH-HHHHH
Confidence 4 4899999999999999999999999999999 9999999998 57754
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.91 E-value=1.6e-23 Score=173.32 Aligned_cols=126 Identities=19% Similarity=0.075 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccc
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f 171 (235)
++++.++||+||+.|+.++++|+.|+.||.. |+++|++.||++++.||++||++|.+|++.+||.|.++.++.|+..
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~~--~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~- 80 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQKN--WGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG- 80 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC-
Confidence 7899999999999999999999999999954 9999999999999999999999999999999999999999888754
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHh
Q 026644 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVF 230 (235)
Q Consensus 172 ~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~ 230 (235)
.++.++++.++++|+.++..|++++++|.+. +|+.+.+||+ +|+.+..+
T Consensus 81 -----~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~----~D~~t~~ll~-~~i~eee~ 129 (157)
T TIGR00754 81 -----ETVREMLEADLALELDVLNRLKEAIAYAEEV----RDYVSRDLLE-EILEDEEE 129 (157)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHH-HHHHHHHH
Confidence 3789999999999999999999999999999 9999999998 88887654
No 10
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.88 E-value=2.3e-21 Score=158.04 Aligned_cols=126 Identities=21% Similarity=0.125 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccc
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f 171 (235)
++++++.||++|+.|+.++++|+.++.+|++ ++++|+++||+.++.||++||+.+.+|++.+||.|.+..++.|..+
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~--~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~- 79 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLED--WGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG- 79 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC-
Confidence 6789999999999999999999999999986 7999999999999999999999999999999999999888777543
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHh
Q 026644 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVF 230 (235)
Q Consensus 172 ~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~ 230 (235)
.+..++++.+++.|+.+++.+++++++|++. +|+.+++||+. ++.++.+
T Consensus 80 -----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~----~D~~t~~~l~~-~~~~e~~ 128 (153)
T cd00907 80 -----EDVPEMLENDLALEYEAIAALNEAIALCEEV----GDYVSRDLLEE-ILEDEEE 128 (153)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHH-HHHHHHH
Confidence 2678999999999999999999999999999 99999999995 5555443
No 11
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.88 E-value=1.6e-21 Score=154.30 Aligned_cols=124 Identities=35% Similarity=0.340 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----ccCCCcc
Q 026644 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS-----ILMPLSE 170 (235)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~-----I~~p~~~ 170 (235)
+++||++++.|+.+++.|+.|+.+|+. .+++|+++||+++++++++||+++++|+..|||.|.... ++.|..
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~--~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~- 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDG--PNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE- 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence 478999999999999999999999994 799999999999999999999999999999999665544 555543
Q ss_pred cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhhh
Q 026644 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFRN 232 (235)
Q Consensus 171 f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~~ 232 (235)
|+++.++|+.+++.|+.+...+.++++.|.+. +|+.+.+|+ .+|+.+|.+.+
T Consensus 78 -----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~----~D~~t~~~~-~~~l~~~~~~~ 129 (142)
T PF00210_consen 78 -----WTDPREALEAALEDEKEIIEEYRELIKLAEKE----GDPETADFL-DEFLEEEEKHI 129 (142)
T ss_dssp -----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TSHHHHHHH-HHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHH-HHHHHHHHHHH
Confidence 56899999999999999999999999999999 999999999 59999998764
No 12
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.83 E-value=1.2e-19 Score=146.52 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccCcc
Q 026644 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA 174 (235)
Q Consensus 95 ~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~~~ 174 (235)
....||+.+..|+.++++|++|+.|+++ +|++|+++||+.+|.+|+.||.++++|++.+||.|. .|+.
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~~--~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~----- 69 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKARK--EGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPI----- 69 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCC-----
Confidence 4578999999999999999999999998 799999999999999999999999999999999999 4443
Q ss_pred ccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHH
Q 026644 175 EKGDALYAMELTLSLEKL-TNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKV 227 (235)
Q Consensus 175 e~~~~lea~e~AL~lEk~-vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~E 227 (235)
.|+++.+.|+.++++|+. ++..|.+++++|.++ +|+.+.+||+.-.-.|
T Consensus 70 ~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e----~d~~~~~~f~~i~~~E 119 (134)
T cd01041 70 GIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEE----GFKEAARSFEAIAEAE 119 (134)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 346899999999999995 889999999999999 9999999999443333
No 13
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.82 E-value=7e-19 Score=145.37 Aligned_cols=132 Identities=20% Similarity=0.096 Sum_probs=121.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 026644 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (235)
Q Consensus 90 ~~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~ 169 (235)
+..++++..||+++..||.|.++|+.++..+.. ||+..++++|+++|.+||.||++++++|+..+|.|+++.+.+-..
T Consensus 2 kG~~~Vi~~LN~~L~~EL~ainQYflHsrM~~~--WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~i 79 (157)
T COG2193 2 KGDPKVIRLLNEALGLELAAINQYFLHSRMYKN--WGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRI 79 (157)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccccc
Confidence 356899999999999999999999999999996 999999999999999999999999999999999999999998766
Q ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHH---------hhHHHHHhhhc
Q 026644 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRA---------LFIKVIVFRNA 233 (235)
Q Consensus 170 ~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~---------~fL~EQv~~~~ 233 (235)
+ .++.++++..|++|+.+.+.+++.+..|++. +||.+++.|+. +||+.|...|+
T Consensus 80 G------~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~----~Dyvsrdl~~~iL~deEEHid~LetqL~li~ 142 (157)
T COG2193 80 G------ETVKEMLEADLALEYEARDALKEAIAYCEEV----QDYVSRDLLEEILADEEEHIDWLETQLDLIA 142 (157)
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 5 5899999999999999999999999999999 99999999874 46666666554
No 14
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.80 E-value=3e-18 Score=138.99 Aligned_cols=131 Identities=18% Similarity=0.114 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc------
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL------ 165 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~------ 165 (235)
.+++.+.||++++.|+.++++|+.++.++.. +++++++++|++++.||++||+++.+|++.+||.|......
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g--~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVKG--PEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 3678999999999999999999999999997 68999999999999999999999999999999999986531
Q ss_pred -CCCcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhhh
Q 026644 166 -MPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFRN 232 (235)
Q Consensus 166 -~p~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~~ 232 (235)
.+... .....++.++++.+++.|+.+++.+++++++|. . +|+.++++++ +++.+|.+-.
T Consensus 82 ~~~~~~--~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~-~----~D~~t~~ll~-~~l~de~~h~ 141 (148)
T cd01052 82 CKCGYL--PPDPPDVKGILKVNLKAERCAIKVYKELCDMTH-G----KDPVTYDLAL-AILNEEIEHE 141 (148)
T ss_pred ccccCC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHc-C----CChHHHHHHH-HHHHHHHHHH
Confidence 11110 112357899999999999999999999999985 5 7999999998 7998887643
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.73 E-value=8.5e-17 Score=129.00 Aligned_cols=102 Identities=22% Similarity=0.134 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccCcc
Q 026644 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA 174 (235)
Q Consensus 95 ~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~~~ 174 (235)
+++.||+|++.|+.++++|+.|+.|++. .|++|+|++|+.++.+|+.||.++.+++ |+ |+
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~--eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i~--------- 61 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQR--EGYPEVAEELKRIAMEEAEHAARFAELL---GK------VS--------- 61 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------Cc---------
Confidence 6789999999999999999999999998 6999999999999999999999999966 22 11
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHH
Q 026644 175 EKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRA 222 (235)
Q Consensus 175 e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~ 222 (235)
+|+.+.|+.++++|+.++..|.+++++|.++ +|+.+.+||+.
T Consensus 62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~e----gd~~~~~~~~~ 103 (123)
T cd01046 62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAE----GLDEAHDFFHE 103 (123)
T ss_pred --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHc----CCHHHHHHHHH
Confidence 3789999999999999999999999999999 99999999983
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.35 E-value=4.6e-11 Score=102.56 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc--C-CC
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL--M-PL 168 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~--~-p~ 168 (235)
.+++.+.||+.+..|+.+.|.|..+++.... +.-++++.||.+...||+.||+.|.++|.+.||.|.+.+-+ . ..
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G--~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLIG--LEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 4688999999999999999999999999997 67889999999999999999999999999999999887652 0 00
Q ss_pred ccc--CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHH
Q 026644 169 SEF--DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKV 227 (235)
Q Consensus 169 ~~f--~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~E 227 (235)
..+ ...+..|+.++++.+|.-|+-....++++++.+. . .||.+.+.++. -|.+
T Consensus 96 ~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~----kDp~T~~l~~~-IL~d 150 (186)
T PRK13456 96 CPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-G----KDPRTYDLALA-ILQE 150 (186)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----CCccHHHHHHH-HHHH
Confidence 000 0012347999999999999999999999999998 4 59999998885 5544
No 17
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=99.12 E-value=1.8e-09 Score=87.12 Aligned_cols=121 Identities=18% Similarity=0.070 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------ccCCCc
Q 026644 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS--------ILMPLS 169 (235)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~--------I~~p~~ 169 (235)
.||..+..++..+..|....-+... .++..++.+|.+.++++++|+..+.+++...||.|..+. +..++.
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~G--~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVKG--PNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCccC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 5888888999988888875544444 799999999999999999999999999999999998774 554442
Q ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHh
Q 026644 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVF 230 (235)
Q Consensus 170 ~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~ 230 (235)
.+ -++.++++..++.|..+...++++++.|.+. +|+.+++.++ +++.+.-+
T Consensus 80 ~~-----~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~----~D~~t~~ll~-~il~~~ek 130 (139)
T cd01043 80 GV-----LSAKEMVAELLEDYETLIEELREAIELADEA----GDPATADLLT-EIIRELEK 130 (139)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHH-HHHHHHHH
Confidence 21 3789999999999999999999999999999 9999999998 56665433
No 18
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.96 E-value=3.8e-08 Score=73.66 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----ccCCCcccC
Q 026644 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS-----ILMPLSEFD 172 (235)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~-----I~~p~~~f~ 172 (235)
.|+..+..|+.+...|..++..++ .+++..+|...+.+|+.|++.|.+++..+||.+.... ...+.
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~---- 72 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALP---- 72 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccC----
Confidence 689999999999999999999876 6889999999999999999999999999999987543 11111
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHH
Q 026644 173 HAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVI 228 (235)
Q Consensus 173 ~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQ 228 (235)
....+..+++..++..|......+..+.+.+ .|+.+.+++..-.-+|+
T Consensus 73 -~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~-------~d~~~~~~~~~~~~~E~ 120 (130)
T cd00657 73 -KTSDDPAEALRAALEVEARAIAAYRELIEQA-------DDPELRRLLERILADEQ 120 (130)
T ss_pred -CCccCHHHHHHHHHHHHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHH
Confidence 1235788999999999999988888877664 48889999985444444
No 19
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=98.89 E-value=1.4e-07 Score=77.55 Aligned_cols=127 Identities=13% Similarity=0.040 Sum_probs=100.3
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCC
Q 026644 91 FTDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP 167 (235)
Q Consensus 91 ~s~e~e~aLNeQIn---~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p 167 (235)
-+++.-..|++|+. .|+.+..+|+..+.-... +.+.+++.|...|.+|++|++.|.+++..+||.+.+......
T Consensus 10 ~~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~~---~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~ 86 (154)
T cd07908 10 PNPRYAELLLDDYAGTNSELTAISQYIYQHLISEE---KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD 86 (154)
T ss_pred CChHHHHHHHHHhCCcchHHHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc
Confidence 36778889999998 999999999998887763 679999999999999999999999999999999875432110
Q ss_pred Cc-ccC---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHH
Q 026644 168 LS-EFD---HAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKV 227 (235)
Q Consensus 168 ~~-~f~---~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~E 227 (235)
.. .|. -....+..++++.++..|+.....+.++.+. . .|+.+++.|+.-.-+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~---~----~d~~~r~ll~~I~~eE 143 (154)
T cd07908 87 KFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAET---I----KDPYIRALLNRIILDE 143 (154)
T ss_pred cCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH---c----CCHHHHHHHHHHHHHH
Confidence 00 000 0112478899999999999999999998873 5 6999999888544443
No 20
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.48 E-value=2.9e-06 Score=66.23 Aligned_cols=113 Identities=24% Similarity=0.180 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CeeeeccccCCCccc----
Q 026644 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG--GKVKLQSILMPLSEF---- 171 (235)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RG--G~V~l~~I~~p~~~f---- 171 (235)
.||..|..|..+...|...+..++. +++..+|+..+.+|+.|++.|.+.+..+| +.+.+..........
T Consensus 2 ~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (139)
T cd01045 2 ILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPE 76 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhh
Confidence 6899999999999999999998875 38999999999999999999999999997 333332111000000
Q ss_pred ---CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHH
Q 026644 172 ---DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRA 222 (235)
Q Consensus 172 ---~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~ 222 (235)
.-....+..++++.++..|+.....+..+.+. . .|+.+.+.+..
T Consensus 77 ~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~---~----~d~~~~~~~~~ 123 (139)
T cd01045 77 FKKALESLMDPLEALRLAIEIEKDAIEFYEELAEK---A----EDPEVKKLFEE 123 (139)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH---c----CCHHHHHHHHH
Confidence 00123588999999999999998888777653 4 68888888873
No 21
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.23 E-value=0.00011 Score=61.49 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC
Q 026644 92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL 168 (235)
Q Consensus 92 s~e~e~aLNeQIn---~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~ 168 (235)
++..-..|.+|+. -|+.+..+|+..+..++ ..+.++..|...+.||+.|++.|.+.+...||...- .|-
T Consensus 18 ~p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g----~pw 89 (156)
T cd01051 18 DPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG----VPW 89 (156)
T ss_pred CHHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CcC
Confidence 5666777777775 69999999999999884 368999999999999999999999999999983322 221
Q ss_pred -cccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHH
Q 026644 169 -SEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRA 222 (235)
Q Consensus 169 -~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~ 222 (235)
..+ -.-.+++...+..+++.|+.....+.++++.+ .||.+.+-|..
T Consensus 90 ~~~y-v~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~-------~Dp~v~~~l~~ 136 (156)
T cd01051 90 TAAY-IQSSGNLVADLRSNIAAESRARLTYERLYEMT-------DDPGVKDTLSF 136 (156)
T ss_pred CCcc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHH
Confidence 111 11236899999999999999999999999874 58888887774
No 22
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.23 E-value=3.7e-05 Score=60.04 Aligned_cols=120 Identities=20% Similarity=0.192 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccC-------CCc
Q 026644 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM-------PLS 169 (235)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~-------p~~ 169 (235)
+.|+..|..|..+...|..++.-+.++ + |-+++.|+..|.+|++|+..|.+.+..+++.+....... +..
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence 468899999999999999999999974 6 999999999999999999999999999987654431111 111
Q ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHH
Q 026644 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVI 228 (235)
Q Consensus 170 ~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQ 228 (235)
..... .++..+++.++..|+.....+..+.. .. .|+....+|+.---+|+
T Consensus 78 ~~~~~--~~~~~~l~~a~~~E~~~~~~Y~~~a~---~~----~~~~~~~~~~~l~~~E~ 127 (137)
T PF02915_consen 78 EEETD--ENLEEALEMAIKEEKDAYEFYAELAR---KA----PDPEIRKLFEELAKEEK 127 (137)
T ss_dssp CSSHH--HHHHHHHHHHHHHHHTHHHHHHHHHH---HT----TSHHHHHHHHHHHHHHH
T ss_pred hhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHH---HC----CCHHHHHHHHHHHHHHH
Confidence 11111 25789999999999988888776654 46 78999888875444443
No 23
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.19 E-value=0.00011 Score=61.77 Aligned_cols=123 Identities=10% Similarity=0.030 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------ccc
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL--------QSI 164 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l--------~~I 164 (235)
+.+.+.||..+..++.....|..+.-+-.. ..+..+..+|.++..++++|+..+.+++...||.|.- ..|
T Consensus 21 ~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G--~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~i 98 (162)
T PRK09448 21 KATIELLNQQLAQFIDLSLITKQAHWNMKG--ANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTPL 98 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCCC
Confidence 457899999999999999998886655554 5788899999999999999999999999999999853 223
Q ss_pred cC-CCcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhh
Q 026644 165 LM-PLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFR 231 (235)
Q Consensus 165 ~~-p~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~ 231 (235)
+. |.. +-+..++++..++.-..+...+++.+ .+. +|+.+.+.|. +++.+.-+.
T Consensus 99 ~e~~~~------~~~~~~~l~~l~~d~~~~~~~~r~~i---~e~----~D~~T~dll~-~~~~~~eK~ 152 (162)
T PRK09448 99 KSYPLD------IHNVQDHLKALADRYAIVANDVRKAI---DEA----GDEDTADIFT-AASRDLDKF 152 (162)
T ss_pred CCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHH---hhc----CChhHHHHHH-HHHHHHHHH
Confidence 33 221 22567899999998888989999888 677 8999999997 677655443
No 24
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.0038 Score=52.56 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------eccc
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK--------LQSI 164 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~--------l~~I 164 (235)
.++.+.||+++..=+......+. +.|.=+ ...+--+..+|.++.++-.+|...+.+++...||.|. +..|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~~-~HWnV~-G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTHN-YHWNVK-GPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-ccccee-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 56777888775433222222221 222222 2345557999999999999999999999999999985 2223
Q ss_pred cCCCcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHHhh
Q 026644 165 LMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIVFR 231 (235)
Q Consensus 165 ~~p~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv~~ 231 (235)
+..+. + .++.++++...+--+.+.+.+++...+|.+. +|+.+.+++. ..+.++-|.
T Consensus 92 ke~~~-----~-~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~----gD~~Tadl~~-~~~~~~EK~ 147 (156)
T COG0783 92 KEEPG-----D-YTAREMLKELVEDYEYLIKELRKGIELADEA----GDEVTADLLT-DIIRELEKT 147 (156)
T ss_pred cccCC-----C-CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----CChhHHHHHH-HHHHHHHHH
Confidence 33332 2 4789999999999999999999999999999 9999999998 677776554
No 25
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=97.49 E-value=0.0086 Score=50.28 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----eeccccCC
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV-----KLQSILMP 167 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V-----~l~~I~~p 167 (235)
+++.+.|-.....|+.+.|-|+.++..... ..=.|...|....-.|-+.|++.+..++-..||.+ +|.+|..=
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~G--le~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC 93 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALKG--LEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGC 93 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCC
Confidence 567777777888999999999988876664 33445666777777788999999999999999986 34444321
Q ss_pred CcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHH
Q 026644 168 LSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIV 229 (235)
Q Consensus 168 ~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv 229 (235)
+..+-..+|.|+.+.++.+++-|+=....+.+++.+- .+| |+.+-+.-+ .-|.|.+
T Consensus 94 ~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T--~Gk---DprTyeLa~-~IL~eEi 149 (172)
T COG2406 94 KPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLT--AGK---DPRTYELAE-AILREEI 149 (172)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHccc--cCC---CcchHHHHH-HHHHHHH
Confidence 1111124567899999999999999999999888874 343 555444444 3444443
No 26
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0029 Score=54.11 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-----------
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK----------- 160 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~----------- 160 (235)
...++++|+..|..|..|...|..++..+++. -+.+.|...+.+|+.|..+|-+.+-+++++..
T Consensus 22 ~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~ 96 (176)
T COG1633 22 ELSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIES 96 (176)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhh
Confidence 34789999999999999999999999999974 48999999999999999999999999988871
Q ss_pred --eccccCCCcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026644 161 --LQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSS 205 (235)
Q Consensus 161 --l~~I~~p~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~ 205 (235)
+..+... ..+... .+..++++.|...|+...+-+..+.....
T Consensus 97 ~~~~~~~~~-~~~~~~--~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~ 140 (176)
T COG1633 97 EILEYLQPG-KEMEKS--VSYLEAIEAAMEAEKDTIEFYEELLDELV 140 (176)
T ss_pred hhccccCcc-cccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1111110 001111 47899999999999999999998887653
No 27
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=97.25 E-value=0.0019 Score=51.49 Aligned_cols=97 Identities=19% Similarity=0.096 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccC--ccc
Q 026644 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD--HAE 175 (235)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~--~~e 175 (235)
.+|+.+..|..+..+|..++....+ +...+.|...|++|++|++-+-+++..+|+.+. .+....-+. -..
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 73 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP---RPKLKIFFYKLLAR 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CccHHHHHHHHHHH
Confidence 4789999999999999999988764 459999999999999999999999999999875 111100000 001
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 176 KGDALYAMELTLSLEKLTNEKLLNLHK 202 (235)
Q Consensus 176 ~~~~lea~e~AL~lEk~vt~~l~~L~~ 202 (235)
..++..+++.+...|+.....+.++..
T Consensus 74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~~ 100 (125)
T cd01044 74 IFGPTFVLKLLERGEERAIEKYDRLLE 100 (125)
T ss_pred HHhHHHHHHHHHHhHHhhHhhHHhhhh
Confidence 123456778888889888888887764
No 28
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=96.82 E-value=0.033 Score=47.47 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccCc
Q 026644 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDH 173 (235)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~~ 173 (235)
.+++-|-+...-|-.+...|+.||...+.. |++.+|+.|+..|.+|..||..+.+.+.+.+ .
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~---------~------- 65 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL---------L------- 65 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------c-------
Confidence 456777778888999999999999999984 9999999999999999999999998887755 1
Q ss_pred cccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCCChhhHHHHH
Q 026644 174 AEKGDALYAMELTLSLEKLTNE-KLLNLHKVSSLLPRTYYDVKLADGIR 221 (235)
Q Consensus 174 ~e~~~~lea~e~AL~lEk~vt~-~l~~L~~lA~~~~~d~~D~~l~dFLe 221 (235)
.++|..+-++.++.-|..-.. .+-.....|... ++-...++++
T Consensus 66 -~~~~~~eNl~~aieGE~~e~~emyp~~ae~A~~~----g~~~~a~~f~ 109 (166)
T COG1592 66 -VLGDTRENLEEAIEGETYEITEMYPVFAEVAEEE----GFKEAARSFR 109 (166)
T ss_pred -ccccHHHHHHHHHccchHHHHHhChHHHHHHHHc----CcHHHHHHHH
Confidence 124677778888876655444 444777778777 6555555555
No 29
>PF13668 Ferritin_2: Ferritin-like domain
Probab=96.22 E-value=0.19 Score=40.13 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccCc
Q 026644 97 AAINEQINVEYNVSYVYHAMFAYFDRD---NVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDH 173 (235)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAayF~~d---~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~~ 173 (235)
+.||-.++.|+.....|..-..-+..+ ...=+....+|+.-...|+.|...|-+.+. |+++. +.|..+|.-
T Consensus 4 ~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~~~ 77 (137)
T PF13668_consen 4 DILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDFPF 77 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCcccccc
Confidence 578999999999999999777644210 012345688999999999999999988887 76663 555555533
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHH
Q 026644 174 AEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIR 221 (235)
Q Consensus 174 ~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe 221 (235)
..+.+....+..|+..|......+..+.... .|+.+...+.
T Consensus 78 ~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~-------~~~~~~~~~~ 118 (137)
T PF13668_consen 78 DPFTDDASFLRLAYTLEDVGVSAYKGAAPQI-------EDPELKALAA 118 (137)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHH
Confidence 4567899999999999999999999887753 5666665554
No 30
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.91 E-value=0.19 Score=53.30 Aligned_cols=115 Identities=11% Similarity=0.045 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eccccCCCccc
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK-LQSILMPLSEF 171 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~-l~~I~~p~~~f 171 (235)
....+.|.-.|.+|-..--.|..++.-.. -+.+.++|...|++|++|.+.|.+....- .+. -.....+...+
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~--~~~~~~~~~~~~~~~ 931 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAA--APSPTEGFKIERAAI 931 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCcccccccchhhh
Confidence 56788999999999999999999998654 46799999999999999999998776421 000 00000000000
Q ss_pred -C--ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChh-hHHHHH
Q 026644 172 -D--HAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVK-LADGIR 221 (235)
Q Consensus 172 -~--~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~-l~dFLe 221 (235)
. ...+.++.++++.|+..|+...+-|.++.+. . .|+. ...+++
T Consensus 932 ~~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~---~----~d~e~~k~l~~ 978 (1006)
T PRK12775 932 MAGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAE---T----PDGSVERQLYK 978 (1006)
T ss_pred hhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhh---C----CChHHHHHHHH
Confidence 0 0123568999999999999999999887765 3 4653 455554
No 31
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=95.91 E-value=0.14 Score=43.51 Aligned_cols=112 Identities=19% Similarity=0.146 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-ccCCCcccCc---cccCCHH
Q 026644 105 VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS-ILMPLSEFDH---AEKGDAL 180 (235)
Q Consensus 105 ~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~-I~~p~~~f~~---~e~~~~l 180 (235)
-|+.|..+|......+.. +.+..++++.+.+|.+|-..+-+.+..+|++|.+-. += ....|.- .......
T Consensus 11 GE~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW-~~~gf~lG~~tal~G~~ 84 (165)
T cd01042 11 GEVGAVRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLW-YVAGFALGALTALLGKK 84 (165)
T ss_pred chHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHHHHHHHHhhChH
Confidence 589999999988887753 889999999999999999999999999999997543 11 0011100 0001234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHH
Q 026644 181 YAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKV 227 (235)
Q Consensus 181 ea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~E 227 (235)
-+|-...+.|+.+...|++-.+.-... .|+.+.+.|+ .|..|
T Consensus 85 ~a~~~~~avE~~V~~Hy~~ql~~L~~~----~d~~l~~~l~-~~r~D 126 (165)
T cd01042 85 AAMACTAAVETVVEEHYNDQLRELPAQ----PDKELRAIIE-QFRDD 126 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc----CCHHHHHHHH-HHHHH
Confidence 578888899999999999877765544 5999999998 45444
No 32
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=95.61 E-value=0.31 Score=39.90 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCC--------
Q 026644 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP-------- 167 (235)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p-------- 167 (235)
+..||+.|...+.+..-|-..+...+ -|.+..+|...+.+-..|+..|-.++...||.|.-..-.+-
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~ 76 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK 76 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 57899999999999999998887654 47899999999999999999999999999998864221110
Q ss_pred -CcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHH
Q 026644 168 -LSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIV 229 (235)
Q Consensus 168 -~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv 229 (235)
..-|.. ++-..+++.+..-|+.+.+.|.++.+-. . -++.+...|+..+-..|.
T Consensus 77 lks~~~~---~~d~aiL~~~e~gEd~~~~~y~~aL~~~--~----l~~~~r~~l~~q~~~i~~ 130 (139)
T TIGR02284 77 IRATLTP---NDDYVVLEEAERGEDRAKKAYDETLADQ--D----TPAAARDVALRQYPGVRA 130 (139)
T ss_pred HHHHHcC---CChHHHHHHHHHhHHHHHHHHHHHHhcC--C----CChHHHHHHHHHHHHHHH
Confidence 111110 2334577888888988888888777532 2 488888888877766654
No 33
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=95.17 E-value=0.19 Score=38.85 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 026644 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ 162 (235)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~ 162 (235)
+++..||+.|.....+...|-..+.-+++ +.+..+|.+.+.+...|+..|-.++...||.|.-.
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~ 64 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEELQAEIQELGGEPEES 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence 46789999999999999999998887773 77999999999999999999999999999998644
No 34
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=94.45 E-value=2.2 Score=34.57 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccC----
Q 026644 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD---- 172 (235)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~---- 172 (235)
+.|.-.+..|..+-..|..++--+. .-.-|...+..|.+|...|-..+...|..... .+.+..-|.
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~--~~~~~~~f~~~~~ 72 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPV--DPFSGGVFTNPQY 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCC--CccccccccchhH
Confidence 5678889999999999999887763 45678888999999999998888777644211 111111110
Q ss_pred ----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHH
Q 026644 173 ----HAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIR 221 (235)
Q Consensus 173 ----~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe 221 (235)
.....+..++++.+...|+....-|.++..- . .|+.+...++
T Consensus 73 ~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~---~----~d~d~k~v~~ 118 (135)
T cd01048 73 NQLVEQGPKSLQDALEVGVLIEELDIADYDRLLER---T----QNPDIRDVFE 118 (135)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHh---c----ccHHHHHHHH
Confidence 0122478999999999999988888777654 4 6777777776
No 35
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=92.75 E-value=5.2 Score=34.20 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-cccCCCcccCc---
Q 026644 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ-SILMPLSEFDH--- 173 (235)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~-~I~~p~~~f~~--- 173 (235)
.|.---.-|+.|..+|-.-...+.. .+.+..++++..++|.+|-..+-+.+..+|.+|.+- ++=.. ..|--
T Consensus 6 ~lRVdHAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~-~g~~LG~~ 80 (172)
T PF03232_consen 6 ILRVDHAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYV-AGFALGAL 80 (172)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHH-HHHHHHHH
Confidence 3333345799999999988887774 688999999999999999999999999999998643 11110 00000
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHH
Q 026644 174 AEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVI 228 (235)
Q Consensus 174 ~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQ 228 (235)
.......-+|-..-+.|..+.+.|++-.+.-...+ +-.|+.+.+-|+.--.+|+
T Consensus 81 tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~-~~~d~~l~~~i~~~r~DE~ 134 (172)
T PF03232_consen 81 TALLGDKAAMACTAAVETVVEEHYNDQLRELPAMG-EEEDPELRAIIEQFRDDEL 134 (172)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHH
Confidence 00012245677778889999998888777665310 1179999999984444443
No 36
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=91.74 E-value=5.4 Score=36.99 Aligned_cols=125 Identities=21% Similarity=0.240 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCC-
Q 026644 90 KFTDDCEAAINEQINVEYNVSYVYHA-MFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP- 167 (235)
Q Consensus 90 ~~s~e~e~aLNeQIn~El~ASy~Yls-mAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p- 167 (235)
.+++....+|---.-.| ...=.|+. +..+|..++..-+++++|......||-.|+.-|-+|+..- |++....+..-
T Consensus 55 ~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~~le~~~ 132 (297)
T cd01050 55 ELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPRALERTR 132 (297)
T ss_pred cCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 47788777776666666 33445553 3455554322447899999999999999999999999885 55655444321
Q ss_pred ----CcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHH
Q 026644 168 ----LSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIR 221 (235)
Q Consensus 168 ----~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe 221 (235)
..+|+...-.++...|-...-.|+-..-.+.++.+.|. . +||.+...+.
T Consensus 133 ~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~-~----gdPvL~~i~~ 185 (297)
T cd01050 133 QYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG-A----GDPVLAKLLG 185 (297)
T ss_pred HHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc-C----CChHHHHHHH
Confidence 22333222235668888888899999999999999888 7 8999877665
No 37
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=91.69 E-value=5.6 Score=37.47 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=83.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHhccc---CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 026644 89 HKFTDDCEAAINEQINVEYNVSYVYHAM-FAYFDR---DNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI 164 (235)
Q Consensus 89 ~~~s~e~e~aLNeQIn~El~ASy~Ylsm-AayF~~---d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I 164 (235)
..+++....+|---+-.|=+-.. |+.+ +.+|.. +.....+.++|-....-||-.||.-|-+|+...| +|....+
T Consensus 56 ~~Lpd~~~~alv~~llTEd~LPs-Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg-~vDp~~l 133 (330)
T PF03405_consen 56 STLPDDARVALVGNLLTEDNLPS-YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSG-RVDPVAL 133 (330)
T ss_dssp HTS-HHHHHHHHHHHHHHHTHHH-HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-CCCC
T ss_pred ccCCHHHHHHHHHHHHhhhhhhH-HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhC-CCCHHHH
Confidence 34777775555444444433332 4433 444442 1111456899999999999999999999997755 5555444
Q ss_pred cCCC-----cccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHH
Q 026644 165 LMPL-----SEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIR 221 (235)
Q Consensus 165 ~~p~-----~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe 221 (235)
..-. .+|+...-.++...|-...-.|+.+.-...++.++|... +||.+...+.
T Consensus 134 E~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~----~DpvL~~il~ 191 (330)
T PF03405_consen 134 ERTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQA----GDPVLAQILG 191 (330)
T ss_dssp CHCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TSHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CChHHHHHHH
Confidence 4321 234332224678899999999999999999999999988 9999987775
No 38
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=86.95 E-value=8.1 Score=30.74 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 92 TDDCEAAINEQINVEYN-VSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~-ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~ 154 (235)
...+...|...+..|.. +.-.|-.++..+.. .+....+.+|.....+|.+|+..|-+.+..
T Consensus 71 ~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~--e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 71 IGDTLENLKAAIAGETYEYTEMYPEFAEVAEE--EGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34778999999999996 77999999999997 589999999999999999999988766543
No 39
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=86.77 E-value=3.7 Score=32.58 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n 153 (235)
+.+.+.|...+..|...+-.|-.++..+.. .|....+.||+.....|.+|++.+-+.+.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~~--egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAKA--EGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999997 58999999999999999999998876654
No 40
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=86.61 E-value=3.9 Score=36.32 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccchh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 026644 99 INEQINVEYNVSYVYHAMFAYFDRDNVALKG-LAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ 162 (235)
Q Consensus 99 LNeQIn~El~ASy~YlsmAayF~~d~vgL~G-fAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~ 162 (235)
|+..|.+|+...-.||..+.--+. +... .+.-.+.=+.|||-|..-..+-++..||.|.+.
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~~---~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIKP---GTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS----TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHcccCC---CcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 567899999999999953333322 3333 888999999999999999999999999999887
No 41
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=83.55 E-value=12 Score=33.79 Aligned_cols=125 Identities=16% Similarity=0.079 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccC
Q 026644 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALK-GLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD 172 (235)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~-GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~ 172 (235)
.-...|..-.+.||+|...++-...-|.. ++| .|-.=|-+.+.||-.|-..+.+++...| ..+++++....-|+
T Consensus 66 ~r~~llHaiAhIE~~AIdLa~Da~~RF~~---~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG--~~yGd~P~h~gLw~ 140 (253)
T PF04305_consen 66 GRAALLHAIAHIELNAIDLALDAIYRFHP---NLPREFYDDWLRVADDEARHFRLLRERLEELG--SDYGDLPAHDGLWE 140 (253)
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCcchhhHHHH
Confidence 34667777789999999999988888832 355 3444445678899999999999999999 46677766654333
Q ss_pred ccccC--CHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHH
Q 026644 173 HAEKG--DALYAMEL-TLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKV 227 (235)
Q Consensus 173 ~~e~~--~~lea~e~-AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~E 227 (235)
..+.+ |++.=|.. -+-+|..--+.--.+.+..... +|..+++.|+-.+-+|
T Consensus 141 ~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~----gD~~sa~iL~~I~~DE 194 (253)
T PF04305_consen 141 AAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSA----GDEESAAILEIILRDE 194 (253)
T ss_pred HHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHC----CCHHHHHHHHHHHHHH
Confidence 22111 22222211 1235555444444555555666 8888888888655555
No 42
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=80.76 E-value=9.1 Score=29.18 Aligned_cols=56 Identities=27% Similarity=0.285 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026644 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151 (235)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y 151 (235)
.......+|...|..|-.+.-.|..++.-+.+ +-....|+....+|+.|...|-+.
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d-----~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAEKAED-----PEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999876654 368999999999999999988653
No 43
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=79.68 E-value=32 Score=28.07 Aligned_cols=106 Identities=18% Similarity=0.094 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccCccccC
Q 026644 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKG 177 (235)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~~~e~~ 177 (235)
+|+..+..|+.+.|.|=..+++...+ ...--.....+-|...+.++..+..+|+.+......-.. . .+-.
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~~------~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY~l---P-~~v~ 70 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDGD------RRAAARAALAAHRARRDALAAALRAAGATPPPPEAAYQL---P-FPVT 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS------S-S---
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC---C-CCCC
Confidence 57888999999999999999998753 444455666677888899999999999887544321111 0 0225
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHH
Q 026644 178 DALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIR 221 (235)
Q Consensus 178 ~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe 221 (235)
|+..+...+..+|..+...+..+.. . .|+..+.|--
T Consensus 71 d~~sa~~la~~lE~~~a~aw~~lv~----a----~~~~~R~~av 106 (131)
T PF14530_consen 71 DPASAAALAAALEDDCAAAWRALVA----A----TDPALRRFAV 106 (131)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH----------SHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh----c----CChhHHHHHH
Confidence 7899999999999999999998882 3 5777777765
No 44
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=79.44 E-value=12 Score=30.22 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n 153 (235)
..+.+.|...++.|..+...|..++..+.. .+-+..+.||..--+++.+|..++-+++.
T Consensus 79 ~~~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 79 ESLLEVFEAALEHEQKVTESINNLVDLALE--EKDYATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999997 47889999999888898899988877776
No 45
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=77.72 E-value=46 Score=28.83 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC
Q 026644 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL 168 (235)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~ 168 (235)
.....|-++.+-|..|+-.=++|=..|. ..+++..-+-..+.||++|=+..++-+.+||. .+.++.+++
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~~ 86 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKDP 86 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCCH
Confidence 5677888999999999988776654444 35789999999999999999999999999995 555665553
No 46
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=77.65 E-value=16 Score=27.79 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 026644 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLME 150 (235)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~ 150 (235)
....+|.-.+..|-.+.-.|..++..+. -+...++|...+.+|+.|...|-+
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~l~~~E~~H~~~l~~ 135 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARKAP-----DPEIRKLFEELAKEEKEHEDLLEK 135 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999888765 466899999999999999998864
No 47
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=76.59 E-value=14 Score=29.89 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y 151 (235)
.....+.|...+..|-.+...|..++...+ -+...+.|...+.+|.+|...|-+.
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446778999999999999999999998643 3778899999999999999987653
No 48
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=73.99 E-value=22 Score=25.65 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y 151 (235)
......|...+..|-.+...|..+...+. -+...++|.....+|..|...+.++
T Consensus 76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~~~-----d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 76 DDPAEALRAALEVEARAIAAYRELIEQAD-----DPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44557888889999999999999998876 3568999999999999999988764
No 49
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=70.94 E-value=33 Score=23.97 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026644 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (235)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG 157 (235)
.+++.++.+=.++..|.....=+. =|.+-..|.....+..+++..+.+|++++|=
T Consensus 5 i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 5 IANDLLNSEKAAARNYATAALECA-----NPELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 466777888888888887666555 4789999999999999999999999999984
No 50
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=70.19 E-value=53 Score=26.10 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ 152 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~ 152 (235)
..+.+.|...+..|-.+.-.|..+...++. .+-+..+.||.....+|.+|...|=+.+
T Consensus 80 ~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~--~~D~~t~~~l~~~~~~e~~h~~~l~~~l 137 (153)
T cd00907 80 EDVPEMLENDLALEYEAIAALNEAIALCEE--VGDYVSRDLLEEILEDEEEHIDWLETQL 137 (153)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999888876 4678899999999999999998655443
No 51
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=67.23 E-value=47 Score=28.32 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=54.3
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026644 88 RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR 155 (235)
Q Consensus 88 r~~~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~R 155 (235)
.+..+....++|-..|..|-.++..|.-+...-.+ ++..+.|+..++.|+.|+..+-.+++..
T Consensus 107 ~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~-----~~~~~~~~~~a~~E~~H~~~l~~~~~~~ 169 (176)
T COG1633 107 EMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVN-----EEAKKLFKTIADDEKGHASGLLSLYNRL 169 (176)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888999999999999999999998877664 4688899999999999999998887654
No 52
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=65.10 E-value=79 Score=26.18 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCC-----
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP----- 167 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p----- 167 (235)
+-....|.+....|-...-.+-.|+.-.. -|.+..-|..+.++-++|..+|-+-+...|+.|.-...+.-
T Consensus 4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~-----~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~ 78 (159)
T PF05974_consen 4 DLFIDELRDLYSAEKQLLKALPKLAEAAS-----SPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHH
Confidence 34567888888999998888888886655 38899999999999999999999999999999864331110
Q ss_pred -----CcccCccccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHH
Q 026644 168 -----LSEFDHAEKGDALYAM--ELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVI 228 (235)
Q Consensus 168 -----~~~f~~~e~~~~lea~--e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQ 228 (235)
...+..+ +.+.++. ..+...|..-...|..|..+|... +++...+.|+...-+|+
T Consensus 79 e~~~~~~~~~~d--~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~l----G~~e~a~lL~~~L~EE~ 140 (159)
T PF05974_consen 79 EAQELIEEFAED--PAVKDAALIAAAQKVEHYEIAAYGTLIALAKQL----GDEEAAQLLEQNLDEEE 140 (159)
T ss_dssp HHHHHHHT-S-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCC--chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHH
Confidence 0000000 1234433 577888999999999999999999 99999999986555554
No 53
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=62.44 E-value=78 Score=29.17 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-----c
Q 026644 91 FTDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL-----Q 162 (235)
Q Consensus 91 ~s~e~e~aLNeQIn---~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l-----~ 162 (235)
-++...++|.+|+. -|+.+..+|+.-+.-|.. +++-..+..-+-||..|-+-+-.-|+..-..... .
T Consensus 17 pdp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r~-----~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~ 91 (277)
T COG3546 17 PNPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVRD-----AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEA 91 (277)
T ss_pred CChHHHHHHHHHhCCcchHHHHHHHHHHhhcccCc-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcch
Confidence 36778889999985 799999999988876662 6688889999999999999888777765544433 1
Q ss_pred ccc-------------------CC----CcccC---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhh
Q 026644 163 SIL-------------------MP----LSEFD---HAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKL 216 (235)
Q Consensus 163 ~I~-------------------~p----~~~f~---~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l 216 (235)
++. .| -..|. -...|+++-=|...++.|......+..|++++ .||..
T Consensus 92 ~l~~s~~~~~n~~h~~~~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mt-------dDpgv 164 (277)
T COG3546 92 ELYGSGLGGMNPHHISVLLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEMT-------DDPGV 164 (277)
T ss_pred hhHHhhccCCCchhhhhhccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeecC-------CCccH
Confidence 100 01 00011 12457888888999999999888888888875 46666
Q ss_pred HHHHH
Q 026644 217 ADGIR 221 (235)
Q Consensus 217 ~dFLe 221 (235)
.|-|.
T Consensus 165 rd~L~ 169 (277)
T COG3546 165 RDTLS 169 (277)
T ss_pred HHHHH
Confidence 55554
No 54
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=58.74 E-value=1.5e+02 Score=27.38 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc---c
Q 026644 91 FTDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS---I 164 (235)
Q Consensus 91 ~s~e~e~aLNeQIn---~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~---I 164 (235)
-++..-++|.+|+. -|+.++.+|+..+.-|.... .+...+..-+-||..|.+-+-.-|++.-+.+.... .
T Consensus 17 PDP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~~----~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~ 92 (283)
T PF05067_consen 17 PDPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGPE----KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEA 92 (283)
T ss_dssp --HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SSTT----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHH
T ss_pred CCHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhh
Confidence 36778888999986 69999999999998887531 24588999999999999988766655433221111 0
Q ss_pred c--CC---------------------------CcccC---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026644 165 L--MP---------------------------LSEFD---HAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYY 212 (235)
Q Consensus 165 ~--~p---------------------------~~~f~---~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~ 212 (235)
. .| -.-|. -...||+.--|...++.|....-.+.+|+..+ .
T Consensus 93 ~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mT-------d 165 (283)
T PF05067_consen 93 APGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMT-------D 165 (283)
T ss_dssp HGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT---------
T ss_pred cccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc-------C
Confidence 0 00 01111 12357899999999999999999999998764 6
Q ss_pred ChhhHHHHH
Q 026644 213 DVKLADGIR 221 (235)
Q Consensus 213 D~~l~dFLe 221 (235)
||...+-|.
T Consensus 166 Dpgvkd~L~ 174 (283)
T PF05067_consen 166 DPGVKDMLS 174 (283)
T ss_dssp -HHHHHHHH
T ss_pred CccHHHHHH
Confidence 888888776
No 55
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=58.00 E-value=42 Score=36.02 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026644 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR 155 (235)
Q Consensus 95 ~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~R 155 (235)
..++|.-.|..|-.+...|.-|+..-++. ....++|...++||++|-..|-+.+...
T Consensus 942 ~~~al~lAm~~Ekdai~fY~~la~~~~d~----e~~k~l~~~LA~EEk~Hl~~L~~~~d~~ 998 (1006)
T PRK12775 942 PGNLFRIAIEFERRAVKFFKERVAETPDG----SVERQLYKELAAEEREHVALLTTEFERW 998 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999887642 2357899999999999999998887654
No 56
>PRK10635 bacterioferritin; Provisional
Probab=57.59 E-value=93 Score=25.93 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (235)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n 153 (235)
..+.+.+.|..-+..|..+.-.|--+..+|.. .+=..-..+|..--.+|-+|+..|=..+.
T Consensus 79 ~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~--~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 79 IGEDVEEMLRSDLRLELEGAKDLREAIAYADS--VHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999996 36677788888888889999988765543
No 57
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.40 E-value=56 Score=28.96 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 026644 127 LKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (235)
Q Consensus 127 L~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V 159 (235)
..-+++||++.|.-|.++|..|.+.-..-.+..
T Consensus 21 ~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~ 53 (261)
T cd07648 21 VKELADFLRERATIEETYSKALNKLAKQASNSS 53 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456999999999999999999999888766544
No 58
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=49.06 E-value=1.4e+02 Score=24.77 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026644 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR 155 (235)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~R 155 (235)
++.++.+.|...|..|-.|.-.|--++...++ |++-+-+.....+|..|.+.|-+.+...
T Consensus 96 ~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~D-----p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 96 SSGNLVADLRSNIAAESRARLTYERLYEMTDD-----PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999999999999999999999988763 4555666667778999999998887653
No 59
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=48.37 E-value=40 Score=28.94 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026644 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (235)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RG 156 (235)
-..|++.-.++=.+.-.+-.|+.++.. .|++-...|+.....-|.+|-+-|++||...+
T Consensus 77 A~~ld~~AAl~SaSWG~fQIMGfn~~~--~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 77 ARALDEEAALESASWGLFQIMGFNWKA--LGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHhhCHHHHHHHhhhhHHHHHHHHHHH--cCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 456777888888888899999999997 89999999999999999999999999998854
No 60
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=48.13 E-value=1.2e+02 Score=23.01 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (235)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~ 154 (235)
..+...|...+..|-.....|..+...++. .+=+..+.|+...-.++-+|...|-+++..
T Consensus 79 ~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~--~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~ 138 (142)
T PF00210_consen 79 TDPREALEAALEDEKEIIEEYRELIKLAEK--EGDPETADFLDEFLEEEEKHIWMLQAHLTN 138 (142)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999986 356889999999999999999888877754
No 61
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=46.21 E-value=78 Score=26.07 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee
Q 026644 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (235)
Q Consensus 126 gL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~ 160 (235)
-+..++.||++.|.-|.++|.+|-+.-..-.+.+.
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~ 49 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPE 49 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 45679999999999999999999998887766553
No 62
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.77 E-value=57 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026644 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKR 155 (235)
Q Consensus 126 gL~GfAkfFr~~S~EEreHA~kLi~y~n~R 155 (235)
-...|+.||++.|.-|.++|.+|-+.-..-
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLak~~ 49 (239)
T cd07647 20 MCKELEDFLKQRAKAEEDYGKALLKLSKSA 49 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355699999999999999999999887653
No 63
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.89 E-value=68 Score=28.69 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026644 127 LKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (235)
Q Consensus 127 L~GfAkfFr~~S~EEreHA~kLi~y~n~RG 156 (235)
..-|+.||++.|.=|.+||..|.+.-..-+
T Consensus 21 ~kel~~flkeRa~IEe~Yak~L~klak~~~ 50 (261)
T cd07674 21 TKELADFVRERAAIEETYSKSMSKLSKMAS 50 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345899999999999999999988874333
No 64
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=44.82 E-value=99 Score=24.35 Aligned_cols=47 Identities=9% Similarity=-0.063 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHH
Q 026644 178 DALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVI 228 (235)
Q Consensus 178 ~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQ 228 (235)
...+.|...++.|......+...|..+... +.+.+..+|++.+-+|.
T Consensus 6 ~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~----~f~~l~~~~~~~~~ee~ 52 (148)
T cd01052 6 ELIELLNKAFADEWLAYYYYTILAKHVKGP----EGEGIKEELEEAAEEEL 52 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----chHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998877 88999999997776654
No 65
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=44.07 E-value=2.3e+02 Score=25.04 Aligned_cols=109 Identities=18% Similarity=0.106 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccCcccc--------
Q 026644 105 VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEK-------- 176 (235)
Q Consensus 105 ~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~~~e~-------- 176 (235)
-|+.|-++|.--+.+.... .+. --.++.+++|-.|--.+-+++.+||.+|.+-. |- |.+..+
T Consensus 52 GE~~A~~iY~GQ~~~~r~~---~~R--~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~---P~--W~~~~FalGA~a~L 121 (204)
T COG2941 52 GELGAQAIYQGQAAVARSP---EPR--IQLKEMADEEIDHLAWFEQRLLELGVRPSLLN---PL--WYAAAFALGAGAGL 121 (204)
T ss_pred hHHHHHHHHhhHHHHHcCc---chH--HHHHHHHHHHHHHHHHHHHHHHHccCCccHHH---HH--HHHHHHHHHHHHhh
Confidence 5999999999888887753 222 38899999999999999999999999997532 21 110000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHhhHHHHH
Q 026644 177 GDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRALFIKVIV 229 (235)
Q Consensus 177 ~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQv 229 (235)
-...-+|-..-+.|..+-..|..=...-. + .|..+...|. .|-.+-+
T Consensus 122 lgdk~am~~teavE~vIe~Hy~~ql~~L~-~----~d~~lr~~l~-qfR~DE~ 168 (204)
T COG2941 122 LGDKAAMGFTEAVETVIEKHYDGQLRELP-N----LDAELRAILA-QFRDDEL 168 (204)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHh-h----ccHHHHHHHH-HHhhHHH
Confidence 01133555555666666665554333322 3 5888888887 5655443
No 66
>PRK13456 DNA protection protein DPS; Provisional
Probab=42.58 E-value=1.7e+02 Score=25.50 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (235)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n 153 (235)
++.+.|.+.|..|-.|.-.|.-+--++.. .+--...-... --.+|.+|+..|.+++.
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~~--kDp~T~~l~~~-IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTAG--KDPRTYDLALA-ILQEEIEHEAWFSELLG 163 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999984 34444444444 44566699999999985
No 67
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=40.70 E-value=1.1e+02 Score=29.56 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=87.1
Q ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc-cCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccC
Q 026644 91 FTDDCE-AAINEQINVEYNVSYVYHAMFAYFD-RDNVA--LKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM 166 (235)
Q Consensus 91 ~s~e~e-~aLNeQIn~El~ASy~YlsmAayF~-~d~vg--L~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~ 166 (235)
+++.+. .++.+-|.-|---+|+-+. ..+|. +|.-| -.+.+.|-+...-||-.|+.-|-+|+.- -|+|....|..
T Consensus 115 Lpd~~~v~LvgdmiTEeaLPtY~~~L-n~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLyl-TgrVDm~~iE~ 192 (390)
T PLN00179 115 LPDDYFVVLVGDMITEEALPTYQTML-NTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYL-SGRVDMRQIEK 192 (390)
T ss_pred CChhhhhhhhhcchhhhcchHHHHHH-HHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhh-ccCcCHHHHHH
Confidence 455553 3345566666666655443 23332 22222 2458999999999999999999999987 45676666555
Q ss_pred C-----CcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHH
Q 026644 167 P-----LSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIR 221 (235)
Q Consensus 167 p-----~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe 221 (235)
- ..+|+.....++...|-..-=.|.-+.-+-.+..++|.+. +|+.+...+.
T Consensus 193 t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~----gDp~la~icg 248 (390)
T PLN00179 193 TIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEH----GDAKLAKICG 248 (390)
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhc----CChHHHHHHH
Confidence 2 1344433335899999999899999999999999999988 8998876654
No 68
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=38.12 E-value=1.7e+02 Score=22.80 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (235)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n 153 (235)
..+|.-.+..|-.+...|.-++.. -..+.....+|++|...|.+.+.
T Consensus 78 ~~~l~~~~~~E~~ai~~Y~~~~~~-----------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 78 TFVLKLLERGEERAIEKYDRLLEE-----------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHHHHhHHhhHhhHHhhhhh-----------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 356777778999999999887765 23667899999999999987753
No 69
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=37.84 E-value=1.3e+02 Score=26.56 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 026644 127 LKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (235)
Q Consensus 127 L~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V 159 (235)
...|++||++.+.=|.+||.+|-+....-.+..
T Consensus 21 ~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~ 53 (234)
T cd07652 21 AKEFATFLKKRAAIEEEHARGLKKLARTTLDTY 53 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556999999999999999999998776654443
No 70
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.33 E-value=1.2e+02 Score=27.40 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 026644 127 LKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (235)
Q Consensus 127 L~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V 159 (235)
...++.||++.|.=|.++|..|.+.-..-++.+
T Consensus 28 ~kel~~f~keRa~iEe~Yak~L~kLak~~~~~~ 60 (269)
T cd07673 28 TKELSDFIRERATIEEAYSRSMTKLAKSASNYS 60 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 456899999999999999999998887665443
No 71
>PRK10304 ferritin; Provisional
Probab=35.58 E-value=2.5e+02 Score=23.49 Aligned_cols=65 Identities=8% Similarity=0.096 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDN-VALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~-vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RG 156 (235)
-..+.+.+...+..|..++-.|..+...|...+ ..--.|=.||.+.=.||-.|+..+++.+..-|
T Consensus 80 ~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~~~ 145 (165)
T PRK10304 80 YSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAG 145 (165)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345789999999999999999999999988531 12223333444444447789999998887665
No 72
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=34.94 E-value=1.1e+02 Score=26.78 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=28.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Q 026644 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGK 158 (235)
Q Consensus 126 gL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~ 158 (235)
-+..++.||++.|.=|.++|.+|-+.-..-++.
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLakk~~~~ 52 (236)
T cd07651 20 TLEELRSFYKERASIEEEYAKRLEKLSRKSLGG 52 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 456799999999999999999999887766543
No 73
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=33.07 E-value=1.8e+02 Score=20.77 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 127 LKGLAKFFKESSEEEREHAEKLMEYQNK 154 (235)
Q Consensus 127 L~GfAkfFr~~S~EEreHA~kLi~y~n~ 154 (235)
+.-+.+||++.+.=|.+||.+|-+-..+
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4459999999999999999999988765
No 74
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=30.57 E-value=2.9e+02 Score=22.30 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (235)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n 153 (235)
...+.+.|...+..|-.++..|--+...+.. .+=++...+|..-..+|.+|+..|=.++.
T Consensus 80 ~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~--~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 80 GETVREMLEADLALELDVLNRLKEAIAYAEE--VRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999888875 47789999999999999999988876654
No 75
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=30.37 E-value=1e+02 Score=22.07 Aligned_cols=31 Identities=39% Similarity=0.448 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026644 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (235)
Q Consensus 126 gL~GfAkfFr~~S~EEreHA~kLi~y~n~RG 156 (235)
-+..++.||++.+.-|.++|..|-+.-..-.
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~ 54 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLAKKFK 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999999987766544
No 76
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=29.22 E-value=24 Score=25.03 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=15.9
Q ss_pred CCCCCceEEEeccCCCCCcccc
Q 026644 41 PKNDNGVVVCASKNANNSPLTG 62 (235)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~ 62 (235)
.+.|..+++.|.-|+..+.+||
T Consensus 17 ek~g~k~viaanvgke~ke~sg 38 (64)
T PF09083_consen 17 EKNGQKIVIAANVGKEPKEISG 38 (64)
T ss_dssp EETTEEEEEEEE-SSS-EEEEE
T ss_pred ecCCcEEEEEeccCCCcccccC
Confidence 3556778898888888888887
No 77
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=29.05 E-value=2.5e+02 Score=21.09 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026644 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALK-GLAKFFKESSEEEREHAEKLMEYQNKR 155 (235)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAayF~~d~vgL~-GfAkfFr~~S~EEreHA~kLi~y~n~R 155 (235)
...+-|+.-|.-+.+-+.=...-.|.....| ++..+|..|-+||-++-...|+-+|+-
T Consensus 14 ~~~~eIe~LL~~AkiSl~DyImiKRGS~DmPe~l~~~~~~QideeV~~LKe~IdaLNK~ 72 (79)
T PF10398_consen 14 NAQEEIEILLKIAKISLVDYIMIKRGSQDMPEHLNMAFLAQIDEEVEKLKEHIDALNKI 72 (79)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHTTSS---TTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHhcccCCcCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666655566667667777 899999999999999999999988864
No 78
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=27.07 E-value=2.3e+02 Score=23.46 Aligned_cols=65 Identities=20% Similarity=0.260 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCeeeeccccCCCcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHH
Q 026644 147 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVSSLLPRTYYDVKLADGIRA 222 (235)
Q Consensus 147 kLi~y~n~RGG~V~l~~I~~p~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~~L~~lA~~~~~d~~D~~l~dFLe~ 222 (235)
+|.+|+...-..+.+++++.+...|+ .++....-+....+|+-++ .+...-.=. .|+.+..|||+
T Consensus 75 ~L~~~L~~~~~~~iVPplP~k~~~~~---~~~~E~~~~rr~~LqrfL~----RV~~hP~L~----~d~~l~~FLEs 139 (140)
T cd06891 75 KLFKYLNGANPETFVPALPLPSTSYG---SNNEEDARKLKANLQRWFN----RVCSDPILI----RDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHCCCcEeCCCCCccccCC---CCCHHHHHHHHHHHHHHHH----HHhCChhhc----cCHHHHHHhcc
Confidence 45556666666778888888775543 2344444444445554332 222222224 79999999985
No 79
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.00 E-value=1.5e+02 Score=20.20 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026644 126 ALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (235)
Q Consensus 126 gL~GfAkfFr~~S~EEreHA~kLi~y~n~ 154 (235)
-+||.|......++.|.+|-.++-+-.++
T Consensus 12 i~Pg~aerI~~mae~eq~hR~~~e~~~l~ 40 (50)
T PF10097_consen 12 ILPGAAERIFAMAEKEQEHRHELEKKALK 40 (50)
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988655543
No 80
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.67 E-value=2.1e+02 Score=25.34 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=26.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026644 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (235)
Q Consensus 126 gL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG 157 (235)
....++.||++.+.=|.+.|.+|-+.-..-+|
T Consensus 20 ~~~el~~fl~ERa~IEe~Yak~L~klak~~~~ 51 (233)
T cd07649 20 MQKEMAEFIRERIKIEEEYAKNLSKLSQSSLA 51 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 35569999999999999999999998754443
No 81
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=23.52 E-value=2.9e+02 Score=24.78 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC---------cccCccccCCHHHHHHHHHHHHHHHHHHHH
Q 026644 128 KGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL---------SEFDHAEKGDALYAMELTLSLEKLTNEKLL 198 (235)
Q Consensus 128 ~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~---------~~f~~~e~~~~lea~e~AL~lEk~vt~~l~ 198 (235)
.....|......||..|+.-+.++++.-|-.-.+...+.+. ..+ -..+....-.+-.++-.|..++.-+.
T Consensus 112 ~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~lv~Ee~i~~~~~ 190 (304)
T PF11583_consen 112 DDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLLRRLARL-LPPWERGLLFFAFALVAEEIIDAYQR 190 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHHHHHHTS--SHHHHHHHHHHHHHHHHHSBHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHHHHHHHh-cccccchHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999999888111111111110 000 01111234455666667766655544
Q ss_pred HHHHHHhhCCCCCCChhhHHHHHHhhHHH
Q 026644 199 NLHKVSSLLPRTYYDVKLADGIRALFIKV 227 (235)
Q Consensus 199 ~L~~lA~~~~~d~~D~~l~dFLe~~fL~E 227 (235)
.+ +.+.. -+|.......-+..+|
T Consensus 191 ~~---~~D~~---iqP~~r~v~~iH~~DE 213 (304)
T PF11583_consen 191 EI---ARDET---IQPLVRQVMRIHVRDE 213 (304)
T ss_dssp HH---HT-SS---S-HHHHHHHHHHHHHH
T ss_pred Hh---hcCCC---CChHHHHHHHHHHHHH
Confidence 44 22220 3666666666555554
No 82
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=23.18 E-value=3.5e+02 Score=21.24 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc---cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccC
Q 026644 91 FTDDCEAAINEQINVEYNVSYVYHAMFAY-FD---RDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM 166 (235)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAay-F~---~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~ 166 (235)
........||.+++.|....|.=..-..| |+ ..++.+.-|++||.-.-.=+.-.-+.|-.|+-.+|+.-.......
T Consensus 27 ~~~~a~~~ln~~w~~~V~~~~~~~i~gRYPF~~~s~~dv~l~Df~~fF~p~G~ld~F~~~~L~~fvd~~~~~w~~~~~~~ 106 (125)
T PF06744_consen 27 VLQGARSYLNKAWQAEVYPFCRQAIAGRYPFDPDSSRDVSLADFARFFGPGGVLDQFFNQYLKPFVDTSGNPWRWRPGDG 106 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCcceeCCCCC
Confidence 45577788888888886665543222222 22 456899999999998888888888888889999998877666554
No 83
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=20.74 E-value=2.2e+02 Score=26.42 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=54.6
Q ss_pred hcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcccCccccCCHHHHHHHHHHHHHHHHHHHH
Q 026644 119 YFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLL 198 (235)
Q Consensus 119 yF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l~~I~~p~~~f~~~e~~~~lea~e~AL~lEk~vt~~l~ 198 (235)
+|.+. -.++|++.-++--+-+|--|. .+.-++...+- -..+.+..+. + ...+.+++..|.++|+.-...+.
T Consensus 176 ~l~~~-~km~g~~~~i~~I~RDE~lH~-~f~~~l~~~~~-~~~~~~~~~~--~----~~~i~~l~~~av~~E~e~~~~~~ 246 (324)
T PRK13966 176 YWSSR-AKLTNTADMIRLIIRDEAVHG-YYIGYKFQRGL-ALVDDVTRAE--L----KDYTYELLFELYDNEVEYTQDLY 246 (324)
T ss_pred HHhhc-CCCCcHHHHHHHHHHhHHHHH-HHHHHHHHHHH-HhCChhhHHH--H----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 389999999999999999998 44444444221 1111111111 0 02357999999999999888765
Q ss_pred HHHHHHhhCCCCCCChhhHHHHHHhhHHHH
Q 026644 199 NLHKVSSLLPRTYYDVKLADGIRALFIKVI 228 (235)
Q Consensus 199 ~L~~lA~~~~~d~~D~~l~dFLe~~fL~EQ 228 (235)
.+. +.++ .+.+|++ |+..+
T Consensus 247 ~~~--------Gl~~-~v~~Yi~--y~An~ 265 (324)
T PRK13966 247 DEV--------GLTE-DVKKFLR--YNANK 265 (324)
T ss_pred hcC--------CChH-HHHHHHH--HHHHH
Confidence 322 1122 4677775 55443
No 84
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.74 E-value=5.5e+02 Score=23.41 Aligned_cols=89 Identities=13% Similarity=-0.005 Sum_probs=51.1
Q ss_pred HHHHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--ccccCCCcccCccccCCHHHHHHHHHHHH
Q 026644 113 YHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL--QSILMPLSEFDHAEKGDALYAMELTLSLE 190 (235)
Q Consensus 113 YlsmAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V~l--~~I~~p~~~f~~~e~~~~lea~e~AL~lE 190 (235)
+--+..|....--=|..+.+|+++.+.-|+++|.+|-+-...-.++-.- .... +....-..-|....+....+=.+|
T Consensus 7 ~~~L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~-~~~~~~~s~~~~~~e~~~~a~Q~~ 85 (263)
T cd07678 7 LSILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNET-EMDRSVRTVWGAWREGTAATGQGR 85 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCchhh-hhccccchHHHHHHHHHHHHHHHH
Confidence 3445555554333466899999999999999999998766655444411 1111 011011122344556666666666
Q ss_pred HHHHHHHHHHHH
Q 026644 191 KLTNEKLLNLHK 202 (235)
Q Consensus 191 k~vt~~l~~L~~ 202 (235)
....+.+..++.
T Consensus 86 ~~~~~~~~~~~~ 97 (263)
T cd07678 86 VTRLEAYRRLRD 97 (263)
T ss_pred HHHHHHHHhhhh
Confidence 666555554443
No 85
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=20.69 E-value=4.3e+02 Score=22.92 Aligned_cols=45 Identities=27% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 026644 115 AMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (235)
Q Consensus 115 smAayF~~d~vgL~GfAkfFr~~S~EEreHA~kLi~y~n~RGG~V 159 (235)
.+..+.+..-.-+..+..||++.|.-|.++|.+|-+....-.+..
T Consensus 9 ~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~ 53 (251)
T cd07653 9 NLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKK 53 (251)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444443334567999999999999999999998877655444
Done!