BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026645
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KID2|NTHL1_BOVIN Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1
Length = 305
Score = 221 bits (562), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 139/207 (67%), Gaps = 7/207 (3%)
Query: 6 PVYSLGVDET-DSSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKA 64
PV LG + D S PK RR+ VLLS +LSS TKD+V GA+QRL GL T ++I +
Sbjct: 102 PVDQLGAEHCFDPSASPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGL-TVDSILQT 160
Query: 65 DEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMT 124
D++T+ LIYPV F+ K +K+ + I +YDGDIP+S+ EL+ALPG+GPKMA++ M
Sbjct: 161 DDSTLGALIYPVGFWRSKVKYIKQTSAILQQRYDGDIPASVAELVALPGVGPKMAHLAMA 220
Query: 125 LGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLL 184
+ W V GI VDTHVHRI NRL W TK+ T SPE+TR AL+ WLP+E W IN LL
Sbjct: 221 VAWGTVSGIAVDTHVHRIANRLRW-----TKKATKSPEETRRALEEWLPRELWSEINGLL 275
Query: 185 VGFGQTICTPLRPRCGMCTVSEYCPSA 211
VGFGQ C P+RPRC C CP+A
Sbjct: 276 VGFGQQTCLPIRPRCQACLNRALCPAA 302
>sp|P78549|NTHL1_HUMAN Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2
Length = 312
Score = 219 bits (559), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 138/207 (66%), Gaps = 7/207 (3%)
Query: 6 PVYSLGVDE-TDSSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKA 64
PV LG + DSS PPK RR+ VLLS +LSS TKD+V GA+QRL GL T ++I +
Sbjct: 109 PVDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGL-TVDSILQT 167
Query: 65 DEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMT 124
D+AT+ LIYPV F+ K +K+ + I Y GDIP+S+ EL+ALPG+GPKMA++ M
Sbjct: 168 DDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMA 227
Query: 125 LGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLL 184
+ W V GI VDTHVHRI NRL W TK+ T SPE+TR AL+ WLP+E W IN LL
Sbjct: 228 VAWGTVSGIAVDTHVHRIANRLRW-----TKKATKSPEETRAALEEWLPRELWHEINGLL 282
Query: 185 VGFGQTICTPLRPRCGMCTVSEYCPSA 211
VGFGQ C P+ PRC C CP+A
Sbjct: 283 VGFGQQTCLPVHPRCHACLNQALCPAA 309
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1
Length = 300
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 138/207 (66%), Gaps = 7/207 (3%)
Query: 6 PVYSLGVDE-TDSSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKA 64
PV LG + D+S PPK RR+ VLLS +LSS TKD+V GA+QRL GL T E+I +
Sbjct: 97 PVDQLGAEHCYDASAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGL-TVESILQT 155
Query: 65 DEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMT 124
D+ T+ LIYPV F+ K +K+ I +Y+GDIP+S+ EL+ALPG+GPKMA++ M
Sbjct: 156 DDDTLGRLIYPVGFWRNKVKYIKQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMA 215
Query: 125 LGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLL 184
+ W + GI VDTHVHRI NRL W TK+ T +PE+TR+ L+ WLP+ W +N LL
Sbjct: 216 VAWGTISGIAVDTHVHRIANRLRW-----TKKMTKTPEETRKNLEEWLPRVLWSEVNGLL 270
Query: 185 VGFGQTICTPLRPRCGMCTVSEYCPSA 211
VGFGQ IC P+ PRC C CP+A
Sbjct: 271 VGFGQQICLPVHPRCQACLNKALCPAA 297
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans
GN=nth-1 PE=1 SV=2
Length = 298
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 143/230 (62%), Gaps = 19/230 (8%)
Query: 4 LEPVYSLGVDE-TDSSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAID 62
+ PV ++G + D P RF VL++ +LSS T+D+V A++RL +GL +I
Sbjct: 45 IAPVDTMGCHKLADPLAAPPVHRFQVLVALMLSSQTRDEVNAAAMKRLKDHGL----SIG 100
Query: 63 KADEATIKDL---IYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMA 119
K E + DL + PV FY RKA ++K AKI + GDIP SLD L ALPG+GPKMA
Sbjct: 101 KILEFKVPDLETILCPVGFYKRKAVYLQKTAKILKDDFSGDIPDSLDGLCALPGVGPKMA 160
Query: 120 NMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVR 179
N+VM + W GI VDTHVHRI NRLGW+ KTS+PE+T++AL+ LPK EW
Sbjct: 161 NLVMQIAWGECVGIAVDTHVHRISNRLGWI-------KTSTPEKTQKALEILLPKSEWQP 213
Query: 180 INPLLVGFGQTICTPLRPRCGMCTVSEYCPSAFKESSTSSSKSKKSESSS 229
IN LLVGFGQ C P+RP+CG C CPS S+ + KS+ E+S+
Sbjct: 214 INHLLVGFGQMQCQPVRPKCGTCLCRFTCPS----STAKNVKSETEETST 259
>sp|Q09907|NTH1_SCHPO Endonuclease III homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nth1 PE=1 SV=1
Length = 355
Score = 183 bits (465), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 127/220 (57%), Gaps = 13/220 (5%)
Query: 2 KTLEPVYSLGVDETDSSLPPKERRFAVLLSALLSSLTKDKVADGALQRL---LQNGLHTA 58
K + PV G PK+ RF L++ +LSS TKD V ++ L L GL
Sbjct: 25 KVVAPVDVQGCHTLGERNDPKKFRFQTLVALMLSSQTKDIVLGPTMRNLKEKLAGGL-CL 83
Query: 59 EAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKM 118
E I DE ++ LI V F+ RK +K++A+I K+ GDIP ++++L+ LPG+GPKM
Sbjct: 84 EDIQNIDEVSLNKLIEKVGFHNRKTIYLKQMARILSEKFQGDIPDTVEDLMTLPGVGPKM 143
Query: 119 ANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWV 178
+ M++ W GI VD HVHRICN L W T + EQTR ALQ WLPKE W
Sbjct: 144 GYLCMSIAWNKTVGIGVDVHVHRICNLLHWCN-------TKTEEQTRAALQSWLPKELWF 196
Query: 179 RINPLLVGFGQTICTPLRPRCGMCTVSE--YCPSAFKESS 216
+N LVGFGQTIC P RC MCT+S CPSAFKE S
Sbjct: 197 ELNHTLVGFGQTICLPRGRRCDMCTLSSKGLCPSAFKEKS 236
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=NTH1 PE=1 SV=1
Length = 238
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 124/221 (56%), Gaps = 22/221 (9%)
Query: 4 LEPVYSLGVDETDSSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQ----------- 52
+ PV ++G T S +ERRF +L+S LLSS TKD+V A+ RL +
Sbjct: 27 VSPVDTMGCSITPSCRTEEERRFHILVSLLLSSQTKDEVTYEAMARLRKLLPESAATDGE 86
Query: 53 -NGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLAL 111
G T E + +D I + I V F+ RKA N+KKIA+I K +P + +L++L
Sbjct: 87 ARGGLTIERVANSDVKHINECIKKVGFHNRKAANLKKIAEILREK---GLPREMKDLISL 143
Query: 112 PGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRW 171
PGIG KMA + M+ GI VDTHVHRI NR+G V +T E TR L+R
Sbjct: 144 PGIGNKMALLYMSHACNRTVGISVDTHVHRISNRIGLV-------RTRDVESTRRELERV 196
Query: 172 LPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEYCPSAF 212
+P++EW IN +LVGFGQTIC RPRC C + CPS+
Sbjct: 197 VPRKEWKTINNILVGFGQTICVAKRPRCEECCIRGRCPSSL 237
>sp|Q08214|NTG2_YEAST DNA base excision repair N-glycosylase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NTG2 PE=1
SV=1
Length = 380
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 19 LPPKERRFAVLLSALLSSLTKD-KVADGALQ--RLLQNGLHTAEAID-----KADEATIK 70
+ PK R L+ +LS+ T+D ++A AL N L AE I K DE +
Sbjct: 142 VDPKNFRLQFLIGTMLSAQTRDERMAQAALNITEYCLNTLKIAEGITLDGLLKIDEPVLA 201
Query: 71 DLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNV 130
+LI V+FYTRKA +K+ A++ + +D DIP ++ +L+LPG+GPKM + + GW +
Sbjct: 202 NLIRCVSFYTRKANFIKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQKGWGLI 261
Query: 131 QGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQT 190
GICVD HVHR+C WV K + E TR+ LQ WLP W IN +LVGFGQ
Sbjct: 262 AGICVDVHVHRLCKMWNWVDPI----KCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQL 317
Query: 191 ICTPLRPRCGMCTVSEYCPSAFKESSTSSSKSKKSES 227
IC RC +C ++ C +A E SSK + E
Sbjct: 318 ICMARGKRCDLCLANDVC-NARNEKLIESSKFHQLED 353
>sp|P31378|NTG1_YEAST Mitochondrial DNA base excision repair N-glycosylase 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NTG1 PE=1 SV=1
Length = 399
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 12/181 (6%)
Query: 19 LPPKERRFAVLLSALLSSLTKDKVADGALQRLLQ---NGLH-----TAEAIDKADEATIK 70
+ P++ R VLL +LSS TKD+V A+ +++ + LH T EA+ + +E +
Sbjct: 137 ISPRDYRLQVLLGVMLSSQTKDEVTAMAMLNIMRYCIDELHSEEGMTLEAVLQINETKLD 196
Query: 71 DLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNV 130
+LI+ V F+TRKA + KI ++ D+P++++ELL LPG+GPKMA + + W +
Sbjct: 197 ELIHSVGFHTRKAKYILSTCKILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKI 256
Query: 131 QGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQT 190
+GICVD HV R+ WV QK +P+QTR LQ WLPK W IN LLVGFGQ
Sbjct: 257 EGICVDVHVDRLTKLWKWV----DAQKCKTPDQTRTQLQNWLPKGLWTEINGLLVGFGQI 312
Query: 191 I 191
I
Sbjct: 313 I 313
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=nth PE=3 SV=1
Length = 213
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 111/183 (60%), Gaps = 9/183 (4%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F VL+S +LS T+D+ + A ++L + T + + KA + DLI Y +KA
Sbjct: 23 FRVLISTVLSQRTRDENTEKASKKLFE-VYRTPQELAKAKPEDLYDLIKESGMYRQKAER 81
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ +I++I + KY G +P SL+ELL LPG+G K AN+V+ +G F + VDTHVHRI NR
Sbjct: 82 IVEISRILVEKYGGRVPDSLEELLKLPGVGRKTANIVLWVG-FKKPALAVDTHVHRISNR 140
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVS 205
LGWV KT +PE+T EAL++ LP++ W IN +V FG+ IC P P C C +
Sbjct: 141 LGWV-------KTRTPEETEEALKKLLPEDLWGPINGSMVEFGRRICKPQNPLCEECFLK 193
Query: 206 EYC 208
+C
Sbjct: 194 NHC 196
>sp|Q58030|Y613_METJA Putative endonuclease MJ0613 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0613 PE=3 SV=2
Length = 344
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 116/186 (62%), Gaps = 12/186 (6%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F VL+S ++S+ TKD+V + ++L + + + + DE + DLIYP FY KA N
Sbjct: 27 FKVLISTIISARTKDEVTEEVSKKLFKE-IKDVDDLLNIDEEKLADLIYPAGFYKNKAKN 85
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+KK+AKI Y+G +P SL+ELL LPG+G K AN+V+TL FN GICVDTHVHRICNR
Sbjct: 86 LKKLAKILKENYNGKVPDSLEELLKLPGVGRKTANLVITLA-FNKDGICVDTHVHRICNR 144
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMC--T 203
V T +PE+T L++ LPK+ W IN LLV FG+ IC+ + +C C
Sbjct: 145 WEIVD-------TETPEETEFELRKKLPKKYWKVINNLLVVFGREICSS-KSKCDKCFKE 196
Query: 204 VSEYCP 209
+ E CP
Sbjct: 197 IKEKCP 202
>sp|P73715|END3_SYNY3 Endonuclease III OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=nth PE=3 SV=1
Length = 219
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 21 PKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYT 80
P + A +LSA + +KV QR A A+ D I++LI+ F+
Sbjct: 38 PVQLLVATILSAQCTDERVNKVTPALFQRY-----PDANALAYGDRQEIEELIHSTGFFR 92
Query: 81 RKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVH 140
KA N++ + + ++DG++P ++ELL LPG+ K AN+V+ + + G+ VDTHV
Sbjct: 93 NKAKNIQGACRKIVEEFDGEVPQRMEELLTLPGVARKTANVVLAHAFGILAGVTVDTHVK 152
Query: 141 RICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCG 200
R+ RLG K + P + L + +P+ +W + ++ G+ +C +P CG
Sbjct: 153 RLSQRLGLT-------KATDPIRIERDLMKLIPQPDWENFSIHIIYHGRAVCAARKPLCG 205
Query: 201 MCTVSEYCPSA 211
C ++ CPSA
Sbjct: 206 ECQLAHLCPSA 216
>sp|P46303|UVEN_MICLC Ultraviolet N-glycosylase/AP lyase OS=Micrococcus luteus (strain
ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB
9278 / NCTC 2665 / VKM Ac-2230) GN=pdg PE=1 SV=2
Length = 279
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 2 KTLEPVYSLGVDETDSSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAI 61
+ L Y V E D P F +L++ +LS+ T D + A L A A+
Sbjct: 26 RILAETYPYAVAELDFETP-----FELLVATVLSAQTTDVRVNAATPALFAR-FPDAHAM 79
Query: 62 DKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANM 121
A E +++L+ FY KA + ++++ + ++DG++P+ L++L+ALPG+G K A +
Sbjct: 80 AAATEPELQELVRSTGFYRNKASAILRLSQELVGRHDGEVPARLEDLVALPGVGRKTAFV 139
Query: 122 VMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWL-PKEEWVRI 180
V+ F GI VDTH R+ RLG+ + + P + R R + P +W +
Sbjct: 140 VLG-NAFGQPGITVDTHFGRLARRLGFTDE-------TDPGKGRARRGRPVPPARDWTML 191
Query: 181 NPLLVGFGQTICTPLRPRCGMCTVSEYCPSAFKESSTSSSKSK 223
+ L+ G+ +C RP CG C ++ +CPS + T +++
Sbjct: 192 SHRLIFHGRRVCHARRPACGRCPIARWCPS-YAAGETDPERAR 233
>sp|P63540|END3_MYCTU Endonuclease III OS=Mycobacterium tuberculosis GN=nth PE=3 SV=1
Length = 245
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Query: 30 LSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKI 89
++ +LS+ + DK + L TA +AD ++ LI P FY KA ++ +
Sbjct: 45 VATILSAQSTDKRVNLTTPALFAR-YRTARDYAQADRTELESLIRPTGFYRNKAASLIGL 103
Query: 90 AKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWV 149
+ + ++ G++P+++D+L+ LPG+G K AN+++ F + GI VDTH R+ R W
Sbjct: 104 GQALVERFGGEVPATMDKLVTLPGVGRKTANVILG-NAFGIPGITVDTHFGRLVRRWRWT 162
Query: 150 TQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEYCP 209
T P + +A+ + ++EW ++ ++ G+ +C RP CG+C +++ CP
Sbjct: 163 T-------AEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCP 215
Query: 210 S 210
S
Sbjct: 216 S 216
>sp|P63541|END3_MYCBO Endonuclease III OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=nth PE=3 SV=1
Length = 245
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Query: 30 LSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKI 89
++ +LS+ + DK + L TA +AD ++ LI P FY KA ++ +
Sbjct: 45 VATILSAQSTDKRVNLTTPALFAR-YRTARDYAQADRTELESLIRPTGFYRNKAASLIGL 103
Query: 90 AKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWV 149
+ + ++ G++P+++D+L+ LPG+G K AN+++ F + GI VDTH R+ R W
Sbjct: 104 GQALVERFGGEVPATMDKLVTLPGVGRKTANVILG-NAFGIPGITVDTHFGRLVRRWRWT 162
Query: 150 TQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEYCP 209
T P + +A+ + ++EW ++ ++ G+ +C RP CG+C +++ CP
Sbjct: 163 T-------AEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCP 215
Query: 210 S 210
S
Sbjct: 216 S 216
>sp|Q9CB92|END3_MYCLE Endonuclease III OS=Mycobacterium leprae (strain TN) GN=nth PE=3
SV=2
Length = 245
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Query: 63 KADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMV 122
+AD A +++ I P F+ KA ++ ++ + + ++DG++PS++ +L LPG+G K AN++
Sbjct: 77 QADRAELENFIRPTGFFRNKAASLIRLGQALVERFDGEVPSTMVDLFTLPGVGRKTANVI 136
Query: 123 MTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINP 182
+ F + GI VDTH R+ R W + P + A+ + +++W ++
Sbjct: 137 LG-NAFGIPGITVDTHFGRLVRRWRWTAE-------EDPVKVEHAVGELIERDQWTLLSH 188
Query: 183 LLVGFGQTICTPLRPRCGMCTVSEYCPS 210
++ G+ +C +P CG+C +++ CPS
Sbjct: 189 RVIFHGRRVCHARKPACGVCVLAKDCPS 216
>sp|Q89AW4|END3_BUCBP Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nth PE=3 SV=1
Length = 215
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 99/184 (53%), Gaps = 11/184 (5%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGL-HTAEAIDKADEATIKDLIYPVAFYTRKAC 84
F +L+S +LS+ T D++ + QRL G+ +T I++ I + Y +K+
Sbjct: 35 FELLISVMLSAQTTDRMVNKTTQRLF--GIANTPSGFISIGLHAIRENIRKLGLYNKKSS 92
Query: 85 NMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICN 144
N+ + +I L +Y G +P++ ++L +LPG+G K AN+++ + F + I VDTHV R+CN
Sbjct: 93 NILRTCEILLKRYGGKVPNNREDLESLPGVGRKTANVILNV-IFKKKTIAVDTHVFRLCN 151
Query: 145 RLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTV 204
R+G+ K ++ + L +P++ + + + G+ ICT P+C C +
Sbjct: 152 RIGF-------AKGTTVLTVEKKLLNIVPEKFKLNFHAWFIMHGRYICTSRVPKCSKCII 204
Query: 205 SEYC 208
S C
Sbjct: 205 SSLC 208
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth
PE=3 SV=1
Length = 219
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F ++++ LS+ D + + + L Q + + E +D I + Y KA N
Sbjct: 31 FELVVAVALSAQCTDALVNRVTKTLFQKYKRPEDYLAVPLEELQQD-IKSIGLYRNKAKN 89
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
++K++K+ + Y G++P DEL+ LPG+G K AN+V+++ F V I VDTHV R+ R
Sbjct: 90 IQKLSKMIIEDYGGEVPRDRDELVKLPGVGRKTANVVVSVA-FGVPAIAVDTHVERVSKR 148
Query: 146 LG---WVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMC 202
LG W S + + L R +PKE+W + L+ FG+ C PRC C
Sbjct: 149 LGICRW---------KDSVLEVEKTLMRKVPKEDWSVTHHRLIFFGRYHCKAQSPRCAEC 199
Query: 203 TVSEYC 208
+ C
Sbjct: 200 PLLSLC 205
>sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1
Length = 211
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 13/185 (7%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ LLS+ D + A +L A ++ E +K I + Y KA N
Sbjct: 30 FELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEG-VKTYIKTIGLYNSKAEN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMT--LGWFNVQGICVDTHVHRIC 143
+ K +I L +++G++P L ALPG+G K AN+V+ GW I VDTH+ R+C
Sbjct: 89 IIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGW---PTIAVDTHIFRVC 145
Query: 144 NRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCT 203
NR + PG + EQ E L + +P E V + L+ G+ C +PRCG C
Sbjct: 146 NRTQFA--PG-----KNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCI 198
Query: 204 VSEYC 208
+ + C
Sbjct: 199 IEDLC 203
>sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nth PE=3 SV=1
Length = 211
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 13/185 (7%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ LLS+ D + A +L A ++ E +K I + Y KA N
Sbjct: 30 FELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEG-VKTYIKTIGLYNSKAEN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMT--LGWFNVQGICVDTHVHRIC 143
+ K +I L +++G++P L ALPG+G K AN+V+ GW I VDTH+ R+C
Sbjct: 89 IIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGW---PTIAVDTHIFRVC 145
Query: 144 NRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCT 203
NR + PG + EQ E L + +P E V + L+ G+ C +PRCG C
Sbjct: 146 NRTQFA--PG-----KNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCI 198
Query: 204 VSEYC 208
+ + C
Sbjct: 199 IEDLC 203
>sp|P57219|END3_BUCAI Endonuclease III OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nth PE=3 SV=1
Length = 210
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +LLS +LS+ + D + + + L + +T E I +K+ I + Y KA N
Sbjct: 30 FELLLSVILSAQSTDFIVNKTTKILFKIA-NTPETIFLLGLERLKNYIKDIGLYNTKALN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ + + I LTKY+ +P++ EL +LPG+G K AN+++ + F + I VDTHV R+CNR
Sbjct: 89 IIRTSFIILTKYNSIVPNNRIELESLPGVGRKTANIILNI-LFKKKTIAVDTHVFRVCNR 147
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVS 205
+ K + + E L + +P + + + G+ ICT + +C +C +
Sbjct: 148 TNF-------AKGKNVKIVEEKLIKVVPSIFKLNFHSWFILHGRYICTARKIKCNICLIF 200
Query: 206 EYC 208
+ C
Sbjct: 201 KLC 203
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=nth PE=3 SV=1
Length = 213
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ +LS+ D + A + L + T E I + E +K I + + KA N
Sbjct: 30 FTLLVAVMLSAQATDISVNLATKSLFET-YDTTEKILELGEDGLKKYIKSIGLFNSKAKN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ + KI ++ Y +P+ EL+ LPG+G K AN+V+ F + + VDTHV R+ R
Sbjct: 89 IIALCKILISNYQSSVPNDFKELIKLPGVGRKTANVVLNC-LFGMPTMAVDTHVFRVAKR 147
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVS 205
+G + +SPE + L + + ++ + L+ G+ IC +P C +C +
Sbjct: 148 IGLA-------RGNSPEIVEKELLQIINEKWLTHAHHWLILHGRYICKARKPDCDICPIK 200
Query: 206 EYC 208
EYC
Sbjct: 201 EYC 203
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=nth PE=3 SV=1
Length = 210
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ +LS+ D + A + L T E I + E +K I + + KA N
Sbjct: 30 FTLLVAVILSAQATDISVNLATKSLFAT-YDTPEKILELGEEGLKKYIKSIGLFNSKAKN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ + KI ++ Y +P+ L+ LPG+G K AN+V+ F + + VDTHV R+ NR
Sbjct: 89 IIALCKILISNYQASVPNDFKALIKLPGVGRKTANVVLNC-LFGMPTMAVDTHVFRVANR 147
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVS 205
+G K +PE L + + + + L+ G+ IC +P C +C +
Sbjct: 148 IGLA-------KGDTPEIVENELLQIIDTKWLTHAHHWLILHGRYICKARKPDCDICPIK 200
Query: 206 EYCPSAF 212
EYC F
Sbjct: 201 EYCDYYF 207
>sp|P44319|END3_HAEIN Endonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nth PE=3 SV=1
Length = 211
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ +LS+ DK + A ++L +T +AI +K I + + KA N
Sbjct: 30 FELLIAVILSAQATDKGVNKATEKLFPVA-NTPQAILDLGLDGLKSYIKTIGLFNSKAEN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ K + + K++G++P + + L AL G+G K AN+V+ F I VDTH+ R+CNR
Sbjct: 89 IIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVLNTA-FGHPTIAVDTHIFRVCNR 147
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVS 205
+ + E L + +P E V ++ L+ G+ C +PRCG C +
Sbjct: 148 TNFAAGKDVV-------KVEEKLLKVVPNEFKVDVHHWLILHGRYTCIARKPRCGSCIIE 200
Query: 206 EYC 208
+ C
Sbjct: 201 DLC 203
>sp|Q8KA16|END3_BUCAP Endonuclease III OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=nth PE=3 SV=1
Length = 209
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +LLS +LS+ + D + + L Q +T ++I K ++ I + Y K+ N
Sbjct: 30 FELLLSVILSAKSTDVMVNKITGTLFQIA-NTPQSILKLGFNKLRHYIKSIGLYNTKSLN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ A + TKY+ +PS+ EL +LPG+G K AN+++ + FN I VDTHV R+ NR
Sbjct: 89 IINSAYLIKTKYNNKVPSNRTELESLPGVGRKTANIILNV-LFNKNTIAVDTHVFRVANR 147
Query: 146 LGW-----VTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCG 200
G+ V + K P ++ + W V G+ +CT + +C
Sbjct: 148 TGFAKGKNVIEVEKKMIKIVPSIFKKYVHFW------------FVLHGRYVCTARQLKCK 195
Query: 201 MCTVSEYC 208
C + + C
Sbjct: 196 TCFIEKLC 203
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth
PE=3 SV=1
Length = 212
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 11/184 (5%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ +LS+ D + A + L + +T E + E +K I + + KA N
Sbjct: 30 FTLLVAVILSARATDISVNLATKHLFET-YNTPEKFLELGEEGLKKYIKSIGLFNSKAKN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ + +I + Y IP++ EL+ LPG+G K AN+V+ F + + VDTHV R+ R
Sbjct: 89 IIALCQILIKNYQTSIPNNFKELVKLPGVGRKTANVVLNC-LFAMPTMAVDTHVFRVSKR 147
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLP-KEEWVRINPLLVGFGQTICTPLRPRCGMCTV 204
+G G E + ++WL W L+ G+ IC +P C +C +
Sbjct: 148 IGLA--KGNTAAIVEKELLQIIDEKWLTYAHHW------LILHGRYICKARKPGCNICPI 199
Query: 205 SEYC 208
EYC
Sbjct: 200 KEYC 203
>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=nth PE=3 SV=1
Length = 212
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ +LS+ D + + L + +T E I E +K I + + KA N
Sbjct: 30 FTLLVAVILSARATDISVNLVTKHLFET-YNTPEKILALGEEGLKKYIKSIGLFNSKAKN 88
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ +I + Y IP+ EL+ LPG+G K AN+V+ F + + VDTHV R+ R
Sbjct: 89 IIASCQILIKNYQASIPNDFKELVKLPGVGRKTANVVLNC-LFAMPTMAVDTHVFRVSKR 147
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPK-EEWVRINPLLVGFGQTICTPLRPRCGMCTV 204
+G G E + ++WL W LV G+ IC +P C +C +
Sbjct: 148 IGLA--KGNTTVIVEKELLQIIDEKWLTHAHHW------LVLHGRYICKARKPSCRICHI 199
Query: 205 SEYC 208
EYC
Sbjct: 200 KEYC 203
>sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1434 PE=3 SV=1
Length = 220
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 19/201 (9%)
Query: 21 PKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYT 80
P E R+ V++ A+L+ T K + A+ L L I DE +K+LI P FY
Sbjct: 27 PAETRYEVVVGAILTQNTSWKNVERAINNLKMEDLLEEVKILNVDEDKLKELIRPAGFYN 86
Query: 81 RKACNMKKIAKICLTKY---------DGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQ 131
KA +K + K + Y D D ELL++ G+G + A+ ++ L + +
Sbjct: 87 LKAKRLKNVTKFIVENYGNTEEMAKTDKDTLILRAELLSINGVGKETADSIL-LYALDRE 145
Query: 132 GICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPK--EEWVRINPLLVGFGQ 189
VD + R+ +RLG + + + ++ +E ++ LPK E + + L+V +
Sbjct: 146 SFVVDAYTKRMFSRLGVINEK------AKYDEIKEIFEKNLPKDLEIYKEYHALIVEHCK 199
Query: 190 TICTPLRPRCGMCTVSEYCPS 210
C + C C + E+C S
Sbjct: 200 KFCRK-KALCDNCPIKEFCLS 219
>sp|O83754|END3_TREPA Endonuclease III OS=Treponema pallidum (strain Nichols) GN=nth PE=3
SV=1
Length = 211
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 9/183 (4%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACN 85
F +L++ LLS+ DK + A L T +A+ E + I + Y KA
Sbjct: 33 FTLLVAVLLSAQATDKSVNKATAALFDVA-DTPQAMLALGEERLCSYIRTINLYPTKARR 91
Query: 86 MKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR 145
+ ++ + ++ +P L +LPG+G K AN+V+ +G F + I VDTH+ R R
Sbjct: 92 IIALSAELIERFAAQVPCDAHALESLPGVGHKTANVVLNMG-FGIPTIAVDTHILRTAPR 150
Query: 146 LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVS 205
+G +P L P+E + + ++ G+ CT RPRC C +
Sbjct: 151 IGL-------SSGRTPRAVERDLLVVTPREFRMHAHHWILLHGRYTCTARRPRCTECCLR 203
Query: 206 EYC 208
+ C
Sbjct: 204 DLC 206
>sp|O31584|YFHQ_BACSU Probable A/G-specific adenine glycosylase YfhQ OS=Bacillus subtilis
(strain 168) GN=yfhQ PE=2 SV=1
Length = 369
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 8/200 (4%)
Query: 19 LPPKERR--FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPV 76
LP +E + + V +S ++ T+ + R ++ T EA+ ADE + +
Sbjct: 31 LPWREDQDPYKVWVSEVMLQQTRVETVIPYFLRFVEQ-FPTVEALADADEEKVLKAWEGL 89
Query: 77 AFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVD 136
+Y+R N++ K +Y G +P + L G+GP V+++ +N VD
Sbjct: 90 GYYSR-VRNLQSAVKEVKQEYGGIVPPDEKDFGGLKGVGPYTKGAVLSIA-YNKPIPAVD 147
Query: 137 THVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLR 196
+V R+ +R+ + K KT + +A++ ++ KE+ N L+ G ICTP
Sbjct: 148 GNVMRVMSRILSIWDDIAKPKTRTI--FEDAIRAFISKEKPSEFNQGLMELGALICTPKS 205
Query: 197 PRCGMCTVSEYCPSAFKESS 216
P C +C V ++C SAF+E +
Sbjct: 206 PSCLLCPVQQHC-SAFEEGT 224
>sp|Q10159|MYH1_SCHPO A/G-specific adenine DNA glycosylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=myh1 PE=1 SV=1
Length = 461
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 28/209 (13%)
Query: 21 PKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPV---- 76
P +R + VL+S ++ T+ + ++R + T + EA + P+
Sbjct: 58 PVQRLYEVLVSEIMLQQTRVET----VKRYYTKWMETLPTLKSCAEAEYNTQVMPLWSGM 113
Query: 77 AFYTR-----KACNMKKIAKICLTKYDGDIPSSLDELL-ALPGIGPKMANMVMTLGWFNV 130
FYTR +AC + +AK+ + +IP + DE +PG+GP A V+++ W
Sbjct: 114 GFYTRCKRLHQAC--QHLAKL----HPSEIPRTGDEWAKGIPGVGPYTAGAVLSIAWKQP 167
Query: 131 QGICVDTHVHRICNRLGWVTQPGTKQKTSSP--EQTREALQRWLPKEEWVRINPLLVGFG 188
GI VD +V R+ +R + +K K ++ + E + P + N L+ G
Sbjct: 168 TGI-VDGNVIRVLSRALAIHSDCSKGKANALIWKLANELVDPVRPGD----FNQALMELG 222
Query: 189 QTICTPLRPRCGMCTVSEYCPSAFKESST 217
CTP PRC +C +SE C A++E +
Sbjct: 223 AITCTPQSPRCSVCPISEIC-KAYQEQNV 250
>sp|Q89A45|MUTY_BUCBP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mutY PE=3 SV=1
Length = 351
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 76 VAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICV 135
+ +YTR A N+ K AKI K++G P+S E++ LPGIG A +++ G FN+ +
Sbjct: 80 LGYYTR-ARNIYKTAKILKQKFNGIFPNSYAEIIKLPGIGKSTAGAILSFG-FNLYSCIL 137
Query: 136 DTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPL 195
D ++ R+ R + K +T E++ P + N L+ G IC
Sbjct: 138 DGNIKRVLIRY-YSININNKYIEKLLWKTIESIT---PIYHTNKFNQALIDIGALICLKS 193
Query: 196 RPRCGMCTVSEYCPS 210
P+C +C + C S
Sbjct: 194 NPKCNICPLKSTCKS 208
>sp|A0R567|MUTY_MYCS2 A/G-specific adenine glycosylase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=mutY PE=3 SV=1
Length = 293
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y R+A + + A + ++YD +P +D LL LPGIG A V + VDT+
Sbjct: 80 YPRRAKRLHECAVVIASEYDDVVPRDVDTLLTLPGIGAYTARAVACFA-YQASVPVVDTN 138
Query: 139 VHRICNRLGWVTQPGTKQKTSSPEQTR--EALQRWLPKEEWV-RINPLLVGFGQTICTPL 195
V R+ R +P TR + + LP + + L+ G T+CT
Sbjct: 139 VRRVVTR-------AVHGAADAPASTRDLDMVAALLPPDTTAPTFSAALMELGATVCTAR 191
Query: 196 RPRCGMCTVSE 206
PRCG+C +S
Sbjct: 192 SPRCGICPLSH 202
>sp|P29588|GTMR_METTF G/T mismatches repair enzyme OS=Methanobacterium thermoformicicum
PE=1 SV=1
Length = 221
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 59 EAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKM 118
E I K ++ I I + ++A +K++A++ + Y G +P + +L LPG+G
Sbjct: 68 EDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYT 127
Query: 119 ANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWV 178
VM L F + VD + R+ NR + + + E L +P +
Sbjct: 128 CAAVMCLA-FGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETL---VPGGKCR 183
Query: 179 RINPLLVGFGQTICTPLRPRCGMCTVSEYCPSAFKESST 217
N L+ F IC P +P+C C +S+ C S +++ ST
Sbjct: 184 DFNLGLMDFSAIICAPRKPKCEKCGMSKLC-SYYEKCST 221
>sp|Q05869|MUTY_SALTY A/G-specific adenine glycosylase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=mutY PE=3 SV=1
Length = 350
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G+ P + E+ ALPG+G A +++L +D +
Sbjct: 82 YYARARNLHKAAQQVATLHGGEFPQTFAEIAALPGVGRSTAGAILSLA-LGKHYPILDGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ ++ E + P R N ++ G +CT
Sbjct: 141 VKRVLARCYAVSGW---PGKKEVENTLWTLSEQVT---PARGVERFNQAMMDLGAMVCTR 194
Query: 195 LRPRCGMCTVSEYCPSAFKESSTSSSKSKKSES 227
+P+C +C + C +A ES + K ++
Sbjct: 195 SKPKCTLCPLQNGCIAAAHESWSRYPGKKPKQT 227
>sp|P57617|MUTY_BUCAI A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mutY PE=3 SV=1
Length = 350
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 11/186 (5%)
Query: 26 FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIY---PVAFYTRK 82
+ V +S ++ T K A ++ + N I +++ + D++Y + +Y R
Sbjct: 31 YTVWISEIMLQQTTVKSAIPYFKKFILN----FPNIKSLNDSKLDDVLYLWSGLGYYNR- 85
Query: 83 ACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRI 142
A N+ K A+I KY G P ++ LPGIG A +++L N +D +V RI
Sbjct: 86 AKNIYKSAQIIKKKYKGIFPDQFSNIIQLPGIGRSTAGAILSLS-LNFFYPILDGNVKRI 144
Query: 143 CNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMC 202
R ++ G + ++ ++ P + N ++ G +IC ++P+C +C
Sbjct: 145 LVRYYGIS--GLLKDKKIEKKLWNIIESITPIHNTGKFNQGMMDIGASICISIKPKCTIC 202
Query: 203 TVSEYC 208
+ + C
Sbjct: 203 PLKKEC 208
>sp|P17802|MUTY_ECOLI A/G-specific adenine glycosylase OS=Escherichia coli (strain K12)
GN=mutY PE=1 SV=1
Length = 350
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y +A N+ K A+ T + G P + +E+ ALPG+G A +++L +D +
Sbjct: 82 YYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHFPILDGN 140
Query: 139 VHRICNRL----GWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V R+ R GW PG K+ + E + P R N ++ G ICT
Sbjct: 141 VKRVLARCYAVSGW---PGKKEVENKLWSLSEQVT---PAVGVERFNQAMMDLGAMICTR 194
Query: 195 LRPRCGMCTVSEYCPSAFKES 215
+P+C +C + C +A S
Sbjct: 195 SKPKCSLCPLQNGCIAAANNS 215
>sp|Q8K926|MUTY_BUCAP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=mutY PE=3 SV=1
Length = 347
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 79 YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTH 138
Y ++A N+ K KI ++ P+ +L+ LPGIG A +++L + ++ +
Sbjct: 82 YYKRAENIYKTVKIIKEEFQEKFPTGFSDLIKLPGIGRSTAGAILSLS-LDYFFPILEGN 140
Query: 139 VHRICNR----LGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTP 194
V RI R +G+VT+ +QK ++ P N ++ G ICTP
Sbjct: 141 VKRILMRYYGIIGYVTEKKIEQKLWY------LIELITPIHNTGSFNQGIMDIGALICTP 194
Query: 195 LRPRCGMCTVSEYCPSAFKESS 216
P+C +C + + C A+KE +
Sbjct: 195 KNPKCNLCPLIQKC-IAYKEKN 215
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1
SV=2
Length = 1987
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 45/206 (21%)
Query: 36 SLTKDKVADGALQRLLQNGLHTA--EAIDKADEATIKDLIYPVAFYTRKACNMKKIAKIC 93
SL KD + Q +N + + EAI +A + I + I A +K +
Sbjct: 1452 SLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLERI 1511
Query: 94 LTKYDG-------DIP--SSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICN 144
+ + G + P + D LL++ G+G K V L N+ VDT+V RI
Sbjct: 1512 VKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNL-AFPVDTNVGRIAV 1570
Query: 145 RLGWVT-QPGTKQKTSSPEQTR----------EALQRWLPKEEWVRINPL---------- 183
R+GWV QP PE + E++Q++L W R+ L
Sbjct: 1571 RMGWVPLQP-------LPESLQLHLLELYPVLESIQKFL----WPRLCKLDQRTLYELHY 1619
Query: 184 -LVGFGQTICTPLRPRCGMCTVSEYC 208
L+ FG+ CT RP C C + C
Sbjct: 1620 QLITFGKVFCTKSRPNCNACPMRGEC 1645
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2
Length = 1044
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWV-TQP---GTKQKTSSPEQ 163
LL + GIG K A V LG VDT+V RI RLG V +P G +
Sbjct: 584 LLEIEGIGLKSAECVRLLG-LKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYP 642
Query: 164 TREALQRWL-------PKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEYC 208
+ +++Q++L P+E ++ ++ FG+ CT P C C + C
Sbjct: 643 SMDSIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSEC 694
>sp|Q8R5G2|MUTYH_RAT A/G-specific adenine DNA glycosylase OS=Rattus norvegicus GN=Mutyh
PE=2 SV=1
Length = 516
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 6/186 (3%)
Query: 24 RRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKA 83
R +AV +S ++ T+ R +Q T + + A + L + +Y+R
Sbjct: 97 RAYAVWVSEVMLQQTQVATVIDYYTRWMQK-WPTLQDLASASLEEVNQLWSGLGYYSR-G 154
Query: 84 CNMKKIAKICLTKYDGDIPSSLDELLAL-PGIGPKMANMVMTLGWFNVQGICVDTHVHRI 142
+++ A+ + + G +P + + L L PG+G A + ++ + V G+ VD +V R+
Sbjct: 155 RRLQEGARKVVEELGGHVPRTAETLQQLLPGVGRYTAGAIASIAFDQVTGV-VDGNVIRV 213
Query: 143 CNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMC 202
R+ + T S + Q+ + N + G T+CTP RP C C
Sbjct: 214 LCRVRAIGADPTSSFVS--HHLWDLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCNHC 271
Query: 203 TVSEYC 208
V C
Sbjct: 272 PVQSLC 277
>sp|Q9UIF7|MUTYH_HUMAN A/G-specific adenine DNA glycosylase OS=Homo sapiens GN=MUTYH PE=1
SV=1
Length = 546
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 57 TAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLAL-PGIG 115
T + + A + L + +Y+R +++ A+ + + G +P + + L L PG+G
Sbjct: 155 TLQDLASASLEEVNQLWAGLGYYSRGR-RLQEGARKVVEELGGHMPRTAETLQQLLPGVG 213
Query: 116 PKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKE 175
A + ++ + G+ VD +V R+ R+ + + P T + Q W +
Sbjct: 214 RYTAGAIASIAFGQATGV-VDGNVARVLCRV--------RAIGADPSSTLVSQQLWGLAQ 264
Query: 176 EWVR------INPLLVGFGQTICTPLRPRCGMCTVSEYC 208
+ V N + G T+CTP RP C C V C
Sbjct: 265 QLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLC 303
>sp|P44320|MUTY_HAEIN A/G-specific adenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mutY PE=3 SV=1
Length = 378
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 19 LPPKERR--FAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPV 76
LP ++ + + V LS ++ T+ +R ++ A+ A + + L +
Sbjct: 27 LPWQQNKTLYGVWLSEVMLQQTQVATVIPYFERFIKT-FPNITALANASQDEVLHLWTGL 85
Query: 77 AFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVD 136
+Y R A N+ K A+ +++G+ P++ +++ AL G+G A +++ N +D
Sbjct: 86 GYYAR-ARNLHKAAQKVRDEFNGNFPTNFEQVWALSGVGRSTAGAILS-SVLNQPYPILD 143
Query: 137 THVHRICNRL----GWVTQPGTKQKTSS-PEQTREALQRWLPKEEWVRINPLLVGFGQTI 191
+V R+ R GW + + + + EQ P N ++ G +
Sbjct: 144 GNVKRVLARYFAVEGWSGEKKVENRLWALTEQVT-------PTTRVADFNQAMMDIGAMV 196
Query: 192 CTPLRPRCGMCTVSEYC 208
C +P+C +C ++ C
Sbjct: 197 CMRTKPKCDLCPLNIDC 213
>sp|Q99P21|MUTYH_MOUSE A/G-specific adenine DNA glycosylase OS=Mus musculus GN=Mutyh PE=2
SV=2
Length = 515
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 6 PVYSLGVDETDSSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKAD 65
P +L +E +S R +AV +S ++ T+ R +Q + + A
Sbjct: 83 PWRNLAKEEANSD----RRAYAVWVSEVMLQQTQVATVIDYYTRWMQK-WPKLQDLASAS 137
Query: 66 EATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLAL-PGIGPKMANMVMT 124
+ L + +Y+R +++ A+ + + G +P + + L L PG+G A + +
Sbjct: 138 LEEVNQLWSGLGYYSR-GRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIAS 196
Query: 125 LGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVR----- 179
+ + V G+ VD +V R+ R+ + + P T + W ++ V
Sbjct: 197 IAFDQVTGV-VDGNVLRVLCRV--------RAIGADPTSTLVSHHLWNLAQQLVDPARPG 247
Query: 180 -INPLLVGFGQTICTPLRPRCGMCTVSEYC 208
N + G T+CTP RP C C V C
Sbjct: 248 DFNQAAMELGATVCTPQRPLCSHCPVQSLC 277
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2
Length = 1332
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 36/133 (27%)
Query: 100 DIP--SSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWV-TQPGTKQ 156
D+P + + LL++ G+G K V L + VDT+V RI RLGWV QP
Sbjct: 866 DVPPDKAKEYLLSINGLGLKSVECVRLLSLHQI-AFPVDTNVGRIAVRLGWVPLQP---- 920
Query: 157 KTSSPEQTR----------EALQRWLPKEEWVRINPL-----------LVGFGQTICTPL 195
P++ + E++Q++L W R+ L ++ FG+ CT +
Sbjct: 921 ---LPDELQMHLLELYPVLESVQKYL----WPRLCKLDQKTLYELHYHMITFGKVFCTKV 973
Query: 196 RPRCGMCTVSEYC 208
+P C C + C
Sbjct: 974 KPNCNACPMKAEC 986
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
Length = 1393
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 36/133 (27%)
Query: 100 DIP--SSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVT-QPGTKQ 156
D+P + + LL+ G+G K V L ++ VDT+V RI RLGWV QP
Sbjct: 934 DVPPDKAKEYLLSFNGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQP---- 988
Query: 157 KTSSPEQTR----------EALQRWLPKEEWVRINPL-----------LVGFGQTICTPL 195
PE + E++Q++L W R+ L ++ FG+ CT
Sbjct: 989 ---LPESLQLHLLEMYPMLESIQKYL----WPRLCKLDQKTLYELHYQMITFGKVFCTKS 1041
Query: 196 RPRCGMCTVSEYC 208
+P C C + C
Sbjct: 1042 KPNCNACPMKGEC 1054
>sp|O70249|OGG1_RAT N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1
Length = 345
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR-LGWVTQPGTKQ-KTSSPEQTR 165
L LPG+G K+A+ + + Q + VD HV +I +R GW QP T Q K SP +
Sbjct: 240 LCTLPGVGTKVADCICLMALDKPQAVPVDIHVWQIAHRDYGW--QPKTSQTKGPSPLANK 297
Query: 166 E 166
E
Sbjct: 298 E 298
>sp|O27397|OGG1_METTH Probable N-glycosylase/DNA lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1342 PE=3 SV=1
Length = 312
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 94 LTKYDG-DIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRL 146
+ + DG D + + LL L G+GPK+A+ ++ G+ + VD + RI N +
Sbjct: 211 IRRIDGMDYDDARELLLELSGVGPKVADCILLYGFRKTEAFPVDVWIRRIMNHI 264
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2
Length = 345
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 108 LLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNR-LGWVTQPGTKQ-KTSSPEQTR 165
L LPG+G K+A+ + + Q + VD HV +I +R GW P T Q K SP +
Sbjct: 240 LCTLPGVGAKVADCICLMALDKPQAVPVDVHVWQIAHRDYGW--HPKTSQAKGPSPLANK 297
Query: 166 E 166
E
Sbjct: 298 E 298
>sp|Q944N1|LHP1_SOLLC Chromo domain protein LHP1 OS=Solanum lycopersicum GN=LHP1 PE=1
SV=2
Length = 399
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 24 RRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAI--DKADEATIKDLIYPVAFYTR 81
RRF ++ + T+D +A G L +Q+G H + D D TI L+ PV++
Sbjct: 289 RRFKRETTSAVKDDTQDALAGGPLATFMQDGSHNHVMVADDSKDGYTITQLVNPVSYKAS 348
Query: 82 KACNMKKIAKICLTKY-DGDIPSSLDELLALPGIGPKMANMVMTLGWF 128
+ +M ++ + K DG++ ++ L KM N ++ + ++
Sbjct: 349 FSNDMLDVSVTFVAKRADGNLVLVDNKFL-------KMNNPLLLINFY 389
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=OGG1 PE=1 SV=1
Length = 376
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 98 DGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGIC-VDTHVHRICNR 145
D + L++ G+GPK+A+ V +G ++ GI VD HV RI R
Sbjct: 222 DAQYEDVREHLMSYNGVGPKVADCVCLMG-LHMDGIVPVDVHVSRIAKR 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,814,922
Number of Sequences: 539616
Number of extensions: 3221444
Number of successful extensions: 11903
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 11778
Number of HSP's gapped (non-prelim): 77
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)