Query 026645
Match_columns 235
No_of_seqs 221 out of 1680
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:36:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orn_A Endonuclease III; DNA r 100.0 3.7E-51 1.3E-55 346.0 21.2 185 22-214 30-214 (226)
2 2abk_A Endonuclease III; DNA-r 100.0 6.2E-51 2.1E-55 341.5 19.6 181 22-211 26-206 (211)
3 1kg2_A A/G-specific adenine gl 100.0 5.9E-51 2E-55 344.7 18.9 192 18-214 21-214 (225)
4 1kea_A Possible G-T mismatches 100.0 1.3E-50 4.5E-55 341.7 20.4 192 15-212 23-217 (221)
5 3n5n_X A/G-specific adenine DN 100.0 3.6E-51 1.2E-55 355.6 16.6 191 14-213 28-233 (287)
6 3fsp_A A/G-specific adenine gl 100.0 5.7E-50 2E-54 361.2 19.5 206 15-225 27-236 (369)
7 1pu6_A 3-methyladenine DNA gly 100.0 1.6E-38 5.4E-43 267.3 18.4 167 15-190 19-212 (218)
8 3fhf_A Mjogg, N-glycosylase/DN 100.0 5.1E-33 1.8E-37 232.4 11.6 148 22-194 41-196 (214)
9 4b21_A Probable DNA-3-methylad 100.0 6E-32 2.1E-36 229.0 18.2 154 17-183 50-222 (232)
10 2h56_A DNA-3-methyladenine gly 100.0 2.7E-32 9.1E-37 231.5 14.0 163 20-191 46-218 (233)
11 4e9f_A Methyl-CPG-binding doma 100.0 7.1E-32 2.4E-36 216.2 11.4 118 23-148 29-147 (161)
12 3fhg_A Mjogg, N-glycosylase/DN 100.0 2.2E-31 7.7E-36 222.1 10.7 148 23-194 31-189 (207)
13 3n0u_A Probable N-glycosylase/ 100.0 3E-31 1E-35 222.6 11.0 143 22-172 47-195 (219)
14 2yg9_A DNA-3-methyladenine gly 100.0 3.5E-30 1.2E-34 217.4 17.1 148 19-183 55-212 (225)
15 3s6i_A DNA-3-methyladenine gly 100.0 1.3E-29 4.4E-34 214.2 19.4 153 18-184 40-212 (228)
16 3i0w_A 8-oxoguanine-DNA-glycos 100.0 1.3E-29 4.4E-34 221.3 19.1 161 15-190 106-287 (290)
17 1mpg_A ALKA, 3-methyladenine D 100.0 3.4E-28 1.2E-32 211.7 19.0 155 15-185 103-274 (282)
18 2xhi_A N-glycosylase/DNA lyase 100.0 3E-28 1E-32 218.3 18.5 165 17-187 145-338 (360)
19 2jhn_A ALKA, 3-methyladenine D 100.0 9.3E-28 3.2E-32 210.1 14.2 158 16-185 107-284 (295)
20 2ofk_A 3-methyladenine DNA gly 96.2 0.087 3E-06 42.2 11.8 100 25-125 31-168 (183)
21 2jg6_A DNA-3-methyladenine gly 96.1 0.095 3.3E-06 42.0 11.7 100 25-125 31-168 (186)
22 1wcn_A Transcription elongatio 94.0 0.12 4E-06 34.8 5.5 45 45-92 18-62 (70)
23 4glx_A DNA ligase; inhibitor, 93.0 0.23 7.9E-06 46.7 7.5 92 43-146 455-576 (586)
24 1u9l_A Transcription elongatio 92.5 0.35 1.2E-05 32.5 5.9 48 46-96 18-65 (70)
25 3vdp_A Recombination protein R 92.2 0.067 2.3E-06 43.7 2.4 29 101-129 21-49 (212)
26 1x2i_A HEF helicase/nuclease; 91.4 0.26 8.8E-06 32.7 4.4 23 104-126 44-66 (75)
27 2fmp_A DNA polymerase beta; nu 91.4 0.3 1E-05 42.7 5.9 51 73-125 62-117 (335)
28 1vdd_A Recombination protein R 91.2 0.1 3.4E-06 43.1 2.4 29 101-129 7-35 (228)
29 2fmp_A DNA polymerase beta; nu 90.6 0.57 1.9E-05 40.9 6.9 56 68-125 21-76 (335)
30 2ztd_A Holliday junction ATP-d 90.1 0.18 6.3E-06 41.3 3.1 27 103-129 120-146 (212)
31 2duy_A Competence protein come 89.6 0.2 6.7E-06 33.7 2.5 22 104-125 25-46 (75)
32 4gfj_A Topoisomerase V; helix- 89.5 0.34 1.2E-05 43.7 4.5 69 50-123 534-639 (685)
33 2ihm_A POL MU, DNA polymerase 89.4 0.48 1.6E-05 41.8 5.5 47 76-125 34-80 (360)
34 1z00_A DNA excision repair pro 89.3 0.37 1.3E-05 33.5 3.8 23 104-126 49-71 (89)
35 1kft_A UVRC, excinuclease ABC 89.0 0.32 1.1E-05 32.9 3.2 22 104-125 54-75 (78)
36 1ixr_A Holliday junction DNA h 88.9 0.25 8.6E-06 39.8 3.0 27 103-129 104-130 (191)
37 2bcq_A DNA polymerase lambda; 88.6 0.54 1.8E-05 41.1 5.2 50 73-125 62-115 (335)
38 2ihm_A POL MU, DNA polymerase 88.6 0.34 1.2E-05 42.8 4.0 50 74-125 67-121 (360)
39 2bcq_A DNA polymerase lambda; 88.5 0.91 3.1E-05 39.6 6.6 43 81-125 34-76 (335)
40 1jms_A Terminal deoxynucleotid 88.4 0.57 1.9E-05 41.7 5.3 52 71-125 48-99 (381)
41 2a1j_B DNA excision repair pro 88.3 0.46 1.6E-05 33.2 3.8 23 104-126 62-84 (91)
42 1cuk_A RUVA protein; DNA repai 88.3 0.31 1.1E-05 39.6 3.3 23 103-125 105-127 (203)
43 2a1j_A DNA repair endonuclease 87.2 0.39 1.3E-05 31.4 2.6 24 105-129 3-26 (63)
44 1b22_A DNA repair protein RAD5 86.6 0.45 1.5E-05 35.1 2.9 47 45-94 36-82 (114)
45 1dgs_A DNA ligase; AMP complex 86.6 0.72 2.5E-05 44.0 5.1 76 46-125 453-558 (667)
46 2owo_A DNA ligase; protein-DNA 86.5 2.1 7.3E-05 40.8 8.3 77 45-125 457-563 (671)
47 1z00_B DNA repair endonuclease 86.2 0.63 2.2E-05 32.3 3.4 23 103-125 15-37 (84)
48 2edu_A Kinesin-like protein KI 86.1 2 6.9E-05 30.3 6.2 60 58-126 31-90 (98)
49 2ztd_A Holliday junction ATP-d 84.6 0.63 2.1E-05 38.1 3.2 22 104-125 86-107 (212)
50 1ixr_A Holliday junction DNA h 84.0 0.74 2.5E-05 37.0 3.3 22 104-125 70-91 (191)
51 2a1j_A DNA repair endonuclease 83.8 2.2 7.6E-05 27.6 5.1 38 47-90 17-55 (63)
52 2i5h_A Hypothetical protein AF 83.2 0.32 1.1E-05 39.4 0.8 45 100-149 126-170 (205)
53 1s5l_U Photosystem II 12 kDa e 82.8 0.42 1.5E-05 36.2 1.3 52 61-125 57-108 (134)
54 2edu_A Kinesin-like protein KI 82.7 0.82 2.8E-05 32.4 2.8 22 104-125 38-59 (98)
55 1s5l_U Photosystem II 12 kDa e 82.1 0.4 1.4E-05 36.3 1.0 21 104-124 61-81 (134)
56 1jms_A Terminal deoxynucleotid 81.4 1.1 3.7E-05 39.9 3.7 50 74-125 86-140 (381)
57 2kp7_A Crossover junction endo 80.8 2.5 8.4E-05 29.5 4.6 40 83-124 37-76 (87)
58 1cuk_A RUVA protein; DNA repai 80.4 1.1 3.7E-05 36.3 3.0 21 105-125 72-92 (203)
59 3arc_U Photosystem II 12 kDa e 80.2 0.42 1.4E-05 34.2 0.5 21 104-124 24-44 (97)
60 2duy_A Competence protein come 78.4 0.95 3.3E-05 30.2 1.8 54 58-124 18-71 (75)
61 1z00_A DNA excision repair pro 78.2 1.7 5.8E-05 30.0 3.1 22 104-125 17-38 (89)
62 3arc_U Photosystem II 12 kDa e 77.5 0.65 2.2E-05 33.2 0.8 57 56-125 15-71 (97)
63 1x2i_A HEF helicase/nuclease; 76.0 1.8 6.2E-05 28.4 2.7 24 104-128 12-35 (75)
64 2bgw_A XPF endonuclease; hydro 75.6 2.5 8.4E-05 34.2 3.9 23 103-125 191-213 (219)
65 2a1j_B DNA excision repair pro 75.1 1.9 6.5E-05 29.9 2.7 22 104-125 30-51 (91)
66 1z00_B DNA repair endonuclease 72.2 5.9 0.0002 27.3 4.6 39 47-90 31-69 (84)
67 3b0x_A DNA polymerase beta fam 71.1 5.2 0.00018 37.2 5.4 25 101-125 88-112 (575)
68 3c1y_A DNA integrity scanning 69.7 5.1 0.00017 35.5 4.7 46 46-95 327-372 (377)
69 4gfj_A Topoisomerase V; helix- 67.6 6.5 0.00022 35.5 4.9 20 105-124 467-486 (685)
70 2w9m_A Polymerase X; SAXS, DNA 67.0 3.1 0.00011 38.8 3.0 25 101-125 92-116 (578)
71 3sgi_A DNA ligase; HET: DNA AM 66.6 1.2 4.1E-05 42.1 0.0 22 104-125 559-580 (615)
72 3c1y_A DNA integrity scanning 66.2 4.2 0.00015 36.0 3.5 34 89-123 327-364 (377)
73 2rhf_A DNA helicase RECQ; HRDC 64.4 7.3 0.00025 25.9 3.7 29 85-121 34-62 (77)
74 1vq8_Y 50S ribosomal protein L 60.4 1.8 6.2E-05 36.0 0.0 21 105-125 47-67 (241)
75 1ucv_A Ephrin type-A receptor 60.1 30 0.001 23.1 6.3 27 46-72 22-48 (81)
76 1wud_A ATP-dependent DNA helic 59.6 11 0.00036 26.0 4.0 29 84-120 41-69 (89)
77 2kv2_A Bloom syndrome protein; 59.3 8.6 0.00029 26.2 3.4 29 84-120 35-63 (85)
78 2w9m_A Polymerase X; SAXS, DNA 58.2 15 0.0005 34.3 5.8 51 66-123 93-148 (578)
79 3r8n_M 30S ribosomal protein S 57.0 6 0.00021 28.9 2.3 43 104-146 14-59 (114)
80 2csb_A Topoisomerase V, TOP61; 57.0 40 0.0014 28.5 7.7 61 55-130 374-434 (519)
81 3j20_O 30S ribosomal protein S 52.4 8.8 0.0003 29.4 2.7 23 104-126 21-43 (148)
82 2e1f_A Werner syndrome ATP-dep 52.4 12 0.0004 26.7 3.2 22 101-122 52-73 (103)
83 2i1q_A DNA repair and recombin 52.2 30 0.001 29.0 6.4 48 45-95 14-61 (322)
84 2rrd_A BLM HRDC domain, HRDC d 51.5 14 0.00049 26.1 3.6 29 84-120 50-78 (101)
85 1kft_A UVRC, excinuclease ABC 50.8 13 0.00045 24.6 3.2 39 47-89 37-75 (78)
86 3u5c_S 40S ribosomal protein S 50.7 8.3 0.00028 29.5 2.3 43 104-146 28-73 (146)
87 3iz6_M 40S ribosomal protein S 50.5 9.8 0.00034 29.3 2.7 47 100-146 19-71 (152)
88 3psf_A Transcription elongatio 50.2 29 0.001 34.7 6.7 65 59-125 660-736 (1030)
89 2kz5_A Transcription factor NF 49.3 21 0.00072 24.8 3.9 39 55-93 34-72 (91)
90 2xzm_M RPS18E; ribosome, trans 49.1 10 0.00035 29.3 2.6 23 104-126 28-50 (155)
91 3idw_A Actin cytoskeleton-regu 49.0 56 0.0019 21.7 7.1 63 29-99 5-67 (72)
92 3k4g_A DNA-directed RNA polyme 48.1 44 0.0015 23.0 5.5 19 105-123 43-61 (86)
93 3psi_A Transcription elongatio 46.0 34 0.0012 34.9 6.5 21 105-125 713-733 (1219)
94 3b0x_A DNA polymerase beta fam 45.5 34 0.0012 31.7 6.1 57 68-125 12-72 (575)
95 1skn_P DNA-binding domain of S 44.7 46 0.0016 23.1 5.1 38 55-92 30-67 (92)
96 2lz1_A Nuclear factor erythroi 44.6 35 0.0012 23.7 4.4 38 55-92 34-71 (90)
97 3lda_A DNA repair protein RAD5 44.5 32 0.0011 30.3 5.5 47 45-94 94-140 (400)
98 1v38_A SAM-domain protein sams 44.2 50 0.0017 21.9 5.3 27 46-72 27-53 (78)
99 1z3e_B DNA-directed RNA polyme 44.1 67 0.0023 21.2 6.4 20 104-123 39-58 (73)
100 2nrt_A Uvrabc system protein C 43.9 13 0.00044 30.4 2.6 24 105-129 167-190 (220)
101 2bwb_A Ubiquitin-like protein 43.2 25 0.00085 21.1 3.2 31 74-110 15-45 (46)
102 2ziu_A MUS81 protein; helix-ha 42.4 32 0.0011 29.1 5.0 20 106-125 237-256 (311)
103 1exn_A 5'-exonuclease, 5'-nucl 41.5 11 0.00039 31.9 2.0 15 110-124 207-221 (290)
104 4ic1_A Uncharacterized protein 41.4 7.8 0.00027 30.9 0.9 15 196-210 189-203 (206)
105 2kso_A Ephrin type-A receptor 41.3 67 0.0023 21.5 5.6 27 46-72 31-57 (82)
106 2vqe_M 30S ribosomal protein S 41.0 8.6 0.00029 28.6 1.0 27 99-125 7-36 (126)
107 2bgw_A XPF endonuclease; hydro 40.4 41 0.0014 26.7 5.2 40 46-89 174-213 (219)
108 2dgz_A Werner syndrome protein 39.7 13 0.00044 27.0 1.8 28 84-119 50-77 (113)
109 3bzc_A TEX; helix-turn-helix, 39.6 31 0.001 33.5 4.8 76 64-148 505-589 (785)
110 1xqo_A 8-oxoguanine DNA glycos 39.0 34 0.0012 28.5 4.4 122 67-191 86-228 (256)
111 2qkq_A Ephrin type-B receptor 39.0 71 0.0024 21.2 5.5 27 46-72 30-56 (83)
112 1b0x_A Protein (EPHA4 receptor 38.3 82 0.0028 21.6 5.8 27 46-72 41-67 (94)
113 1wr1_B Ubiquitin-like protein 38.0 35 0.0012 21.6 3.4 16 97-112 42-57 (58)
114 1b4f_A EPHB2; SAM domain, EPH 37.8 85 0.0029 20.7 5.7 27 46-72 26-52 (82)
115 2k4p_A Phosphatidylinositol-3, 37.3 67 0.0023 21.9 5.1 27 46-72 41-67 (86)
116 1b22_A DNA repair protein RAD5 36.9 13 0.00043 27.1 1.3 25 103-127 55-79 (114)
117 3q8k_A Flap endonuclease 1; he 36.9 16 0.00055 31.7 2.2 15 110-124 236-250 (341)
118 1pzn_A RAD51, DNA repair and r 36.4 71 0.0024 27.3 6.4 48 44-94 45-92 (349)
119 2nrt_A Uvrabc system protein C 36.4 35 0.0012 27.7 4.1 20 104-125 198-218 (220)
120 2kz3_A Putative uncharacterize 36.0 1E+02 0.0034 20.9 7.2 40 46-88 16-55 (83)
121 2cp8_A NEXT to BRCA1 gene 1 pr 34.7 30 0.001 21.7 2.6 32 74-111 17-48 (54)
122 2dna_A Unnamed protein product 34.6 35 0.0012 22.3 3.1 35 75-115 28-63 (67)
123 3c65_A Uvrabc system protein C 34.6 8.3 0.00028 31.6 0.0 21 105-125 172-192 (226)
124 3gfk_B DNA-directed RNA polyme 34.5 71 0.0024 21.5 4.7 27 45-71 26-52 (79)
125 2knz_A Ubiquilin-4; cytoplasm, 33.9 34 0.0012 21.0 2.8 36 71-112 16-51 (53)
126 3mab_A Uncharacterized protein 32.4 46 0.0016 23.2 3.6 54 49-103 19-72 (93)
127 3im1_A Protein SNU246, PRE-mRN 32.3 75 0.0026 26.9 5.8 14 113-126 197-210 (328)
128 2jy5_A Ubiquilin-1; UBA, alter 32.0 52 0.0018 20.1 3.5 15 97-111 37-51 (52)
129 2e8n_A Ephrin type-A receptor 31.9 71 0.0024 21.6 4.5 27 46-72 27-53 (88)
130 2eao_A Ephrin type-B receptor 31.8 1.1E+02 0.0036 21.2 5.6 27 46-72 37-63 (99)
131 1x40_A ARAP2; ASAP-related pro 31.5 52 0.0018 22.5 3.8 27 46-72 30-56 (91)
132 3kka_C Ephrin type-A receptor 31.0 1.2E+02 0.0042 20.4 5.7 27 46-72 36-62 (86)
133 1vq8_Y 50S ribosomal protein L 30.8 10 0.00036 31.3 0.0 34 54-90 35-68 (241)
134 1ci4_A Protein (barrier-TO-aut 30.8 27 0.00092 24.3 2.1 36 105-149 17-52 (89)
135 3sgi_A DNA ligase; HET: DNA AM 30.2 11 0.00037 35.6 0.0 71 47-124 470-547 (615)
136 3h8m_A Ephrin type-A receptor 29.5 1.4E+02 0.0046 20.4 5.7 27 46-72 40-66 (90)
137 2cwb_A Chimera of immunoglobul 29.4 60 0.002 23.3 3.9 37 71-113 71-107 (108)
138 3im1_A Protein SNU246, PRE-mRN 28.9 53 0.0018 27.8 4.2 43 75-123 132-174 (328)
139 2g3q_A Protein YBL047C; endocy 28.6 77 0.0026 18.2 3.7 35 69-110 7-41 (43)
140 1rxw_A Flap structure-specific 28.6 27 0.00091 30.0 2.2 15 110-124 239-253 (336)
141 2dah_A Ubiquilin-3; UBA domain 27.5 37 0.0013 21.0 2.2 35 72-112 15-49 (54)
142 1coo_A RNA polymerase alpha su 27.2 88 0.003 22.0 4.4 19 105-123 55-73 (98)
143 3ory_A Flap endonuclease 1; hy 27.1 28 0.00096 30.4 2.1 15 110-124 255-269 (363)
144 2izo_A FEN1, flap structure-sp 27.1 29 0.00098 30.0 2.2 15 110-124 238-252 (346)
145 1a76_A Flap endonuclease-1 pro 26.2 31 0.0011 29.4 2.2 16 110-125 229-244 (326)
146 3kae_A CDC27, possible protein 26.1 2E+02 0.0067 22.9 6.6 96 20-123 110-215 (242)
147 2q0z_X Protein Pro2281; SEC63, 26.0 74 0.0025 27.1 4.6 44 75-123 135-178 (339)
148 3bqs_A Uncharacterized protein 25.8 82 0.0028 21.8 4.0 55 48-103 18-72 (93)
149 2q0z_X Protein Pro2281; SEC63, 25.6 87 0.003 26.6 5.0 19 55-73 182-200 (339)
150 3qe9_Y Exonuclease 1; exonucle 25.4 31 0.001 30.0 2.1 16 110-125 229-244 (352)
151 2kg5_A ARF-GAP, RHO-GAP domain 25.0 1.5E+02 0.005 20.7 5.3 27 46-72 41-67 (100)
152 1vej_A Riken cDNA 4931431F19; 25.0 73 0.0025 21.2 3.4 17 96-112 53-69 (74)
153 3psi_A Transcription elongatio 24.8 44 0.0015 34.1 3.3 45 76-125 720-764 (1219)
154 1b43_A Protein (FEN-1); nuclea 24.7 34 0.0012 29.4 2.2 15 110-124 241-255 (340)
155 3hil_A Ephrin type-A receptor 24.4 79 0.0027 21.2 3.6 27 46-72 38-64 (82)
156 1ul1_X Flap endonuclease-1; pr 24.1 35 0.0012 29.8 2.2 14 111-124 237-250 (379)
157 3psf_A Transcription elongatio 24.1 35 0.0012 34.2 2.3 45 76-125 723-767 (1030)
158 3bzc_A TEX; helix-turn-helix, 23.8 80 0.0028 30.6 4.8 22 104-125 506-527 (785)
159 2va8_A SSO2462, SKI2-type heli 22.9 1.4E+02 0.0049 27.8 6.3 28 101-128 652-679 (715)
160 2dl0_A SAM and SH3 domain-cont 22.5 60 0.0021 22.6 2.8 27 46-72 38-64 (97)
161 1ify_A HHR23A, UV excision rep 21.4 1.4E+02 0.0048 17.8 4.2 33 71-110 13-45 (49)
162 3c65_A Uvrabc system protein C 21.0 20 0.0007 29.3 0.0 24 101-125 200-223 (226)
No 1
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=3.7e-51 Score=346.04 Aligned_cols=185 Identities=29% Similarity=0.563 Sum_probs=176.3
Q ss_pred CCChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 026645 22 KERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDI 101 (235)
Q Consensus 22 ~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~ 101 (235)
.+|||++||++||+|||++++|..++.+|+. .||||++|+++++++|+++|+++||+++||++|+++|+.+.++|+|++
T Consensus 30 ~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~~-~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~ 108 (226)
T 1orn_A 30 HRNPFELLIAVVLSAQCTDALVNKVTKRLFE-KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEV 108 (226)
T ss_dssp CSSHHHHHHHHHHHTTSCHHHHHHHHHHHHH-HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCc
Confidence 4799999999999999999999999999999 599999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHhCCcccHHHHH
Q 026645 102 PSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRIN 181 (235)
Q Consensus 102 ~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 181 (235)
|+++++|++|||||+|||++|++|+|++ ++||||+|+.|++.|+|+++. ..++++++..++.++|.+.|..+|
T Consensus 109 p~~~~~L~~lpGIG~~TA~~il~~a~g~-~~~~vD~~v~Rv~~rlg~~~~------~~~~~~~~~~l~~~~p~~~~~~~~ 181 (226)
T 1orn_A 109 PRDRDELMKLPGVGRKTANVVVSVAFGV-PAIAVDTHVERVSKRLGFCRW------DDSVLEVEKTLMKIIPKEEWSITH 181 (226)
T ss_dssp CSCHHHHTTSTTCCHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHTSSCT------TCCHHHHHHHHHHHSCGGGHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCC-ceeeeCHHHHHHHHHhCCCCC------CCCHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999999999999999998 499999999999999998752 467899999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcccccCcccccC
Q 026645 182 PLLVGFGQTICTPLRPRCGMCTVSEYCPSAFKE 214 (235)
Q Consensus 182 ~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~ 214 (235)
++|++||+.+|++++|+|+.|||++.|+++.+.
T Consensus 182 ~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 182 HRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp HHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCChhhhhhHhhc
Confidence 999999999999999999999999999987553
No 2
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=6.2e-51 Score=341.51 Aligned_cols=181 Identities=31% Similarity=0.508 Sum_probs=173.7
Q ss_pred CCChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 026645 22 KERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDI 101 (235)
Q Consensus 22 ~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~ 101 (235)
.+|||++||++||||||++++|..++.+|+. .||||++|+++++++|+++|+++|||++||++|+++|+.+.++|+|++
T Consensus 26 ~~~pfe~lv~~Il~qqts~~~v~~~~~~l~~-~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~ 104 (211)
T 2abk_A 26 FSSPFELLIAVLLSAQATDVSVNKATAKLYP-VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEV 104 (211)
T ss_dssp CSSHHHHHHHHHHTTTSCHHHHHHHHHHHTT-TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCc
Confidence 5799999999999999999999999999998 599999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHhCCcccHHHHH
Q 026645 102 PSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKEEWVRIN 181 (235)
Q Consensus 102 ~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 181 (235)
|+++++|++|||||+|||++|++|+++++ +||||+|+.|++.|+|+.. ..++++++..+++|+|.+.|..+|
T Consensus 105 ~~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v~Rv~~rlgl~~-------~~~~~~~~~~~~~~~p~~~~~~~~ 176 (211)
T 2abk_A 105 PEDRAALEALPGVGRKTANVVLNTAFGWP-TIAVDTHIFRVCNRTQFAP-------GKNVEQVEEKLLKVVPAEFKVDCH 176 (211)
T ss_dssp CSCHHHHHHSTTCCHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHCSSC-------CSSHHHHHHHHHHHSCGGGTTTHH
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHHCCCC-cCCcCHHHHHHHHHhCCCC-------CCCHHHHHHHHHHhcChhhHHHHH
Confidence 99999999999999999999999999986 9999999999999999753 357899999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcccccCccc
Q 026645 182 PLLVGFGQTICTPLRPRCGMCTVSEYCPSA 211 (235)
Q Consensus 182 ~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~ 211 (235)
++|++||+.+|++++|+|+.|||++.|+++
T Consensus 177 ~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~ 206 (211)
T 2abk_A 177 HWLILHGRYTCIARKPRCGSCIIEDLCEYK 206 (211)
T ss_dssp HHHHHHHHHTSCSSSCCGGGCTTGGGCCCT
T ss_pred HHHHHHHHHHCCCCCCCCCCCCChhhCCCc
Confidence 999999999999999999999999999975
No 3
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=5.9e-51 Score=344.73 Aligned_cols=192 Identities=23% Similarity=0.358 Sum_probs=173.9
Q ss_pred CCCCC--CChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 026645 18 SLPPK--ERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLT 95 (235)
Q Consensus 18 ~~p~~--~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~ 95 (235)
++||. +|||++||++||||||++++|.+++.+|+. .||||++|+++++++|+++|+++||+ +||++|+++|+.+.+
T Consensus 21 ~l~w~~~~~pfe~lv~~IlsQqt~~~~v~~~~~~l~~-~~pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~~i~~ 98 (225)
T 1kg2_A 21 TLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMA-RFPTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVAT 98 (225)
T ss_dssp CSGGGSSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHH-HCSSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHCcCCHHHHHHHHHHHHH-HCCCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHHHHHH
Confidence 46664 799999999999999999999999999998 59999999999999999999999999 589999999999999
Q ss_pred hcCCCChhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHhCCcc
Q 026645 96 KYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKE 175 (235)
Q Consensus 96 ~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 175 (235)
+|+|++|+++++|++|||||+|||++||+|+|+++ .|+||+||+|++.|+++++...+ ...+++++++.++.|+|.+
T Consensus 99 ~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v~Rv~~rl~~~~~~~~--~~~~~~~l~~~~~~~~p~~ 175 (225)
T 1kg2_A 99 LHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNVKRVLARCYAVSGWPG--KKEVENKLWSLSEQVTPAV 175 (225)
T ss_dssp HSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHHHHHHHHHHTCCSCTT--SHHHHHHHHHHHHHHCCST
T ss_pred HhCCCchHHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHHHHHHHHHcCCCCCCC--ccchHHHHHHHHHHHCCcc
Confidence 99999999999999999999999999999999986 67899999999999977653111 1224566777788899999
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCcccccC
Q 026645 176 EWVRINPLLVGFGQTICTPLRPRCGMCTVSEYCPSAFKE 214 (235)
Q Consensus 176 ~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~ 214 (235)
.|..+|++||+||+.+|++++|+|+.|||++.|+++...
T Consensus 176 ~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (225)
T 1kg2_A 176 GVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANN 214 (225)
T ss_dssp THHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHT
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcC
Confidence 999999999999999999999999999999999987654
No 4
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=1.3e-50 Score=341.71 Aligned_cols=192 Identities=22% Similarity=0.404 Sum_probs=175.2
Q ss_pred CCCCCCCC--CChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHH
Q 026645 15 TDSSLPPK--ERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKI 92 (235)
Q Consensus 15 ~~~~~p~~--~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~ 92 (235)
+++.+||. +|||++||++||||||++++|.+++.+|++ .||||++|+++++++|+++|+++||+++||++|+++|+.
T Consensus 23 ~~~~~pw~~~~~pfe~lv~~IlsQqts~~~~~~~~~~l~~-~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~ 101 (221)
T 1kea_A 23 DRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFV-KYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARV 101 (221)
T ss_dssp SCCCCGGGGCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHH-HCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred hhhhCcCCCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHH-HCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 45567775 689999999999999999999999999999 499999999999999999999999999999999999999
Q ss_pred HHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHh-cCcCCCCCCCCCCCHHHHHHHHHHh
Q 026645 93 CLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRL-GWVTQPGTKQKTSSPEQTREALQRW 171 (235)
Q Consensus 93 i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rl-g~~~~~~~~~~~~~~~~~~~~l~~~ 171 (235)
+.++|+|++|+++++|++|||||+|||++|++|++++ ++||||+|++|++.|+ |+...+ + ....++++..++.|
T Consensus 102 i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~~~~-~~~~vD~~v~Rv~~rl~gl~~~~-~---~~~~~~l~~~ae~~ 176 (221)
T 1kea_A 102 VINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGK-KAAMVDANFVRVINRYFGGSYEN-L---NYNHKALWELAETL 176 (221)
T ss_dssp HHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCC-CCCCCCHHHHHHHHHHHCGGGTT-C---CTTSHHHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHhcCC-CcceecHHHHHHHHHHhCCCCCC-C---cHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998 4899999999999999 765421 1 11135677888999
Q ss_pred CCcccHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCcccc
Q 026645 172 LPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEYCPSAF 212 (235)
Q Consensus 172 ~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~ 212 (235)
+|.+.|..+|++||+||+.||++++|+|+.|||++.|+++.
T Consensus 177 ~P~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~ 217 (221)
T 1kea_A 177 VPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYE 217 (221)
T ss_dssp SCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhchhhh
Confidence 99999999999999999999999999999999999999753
No 5
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.6e-51 Score=355.64 Aligned_cols=191 Identities=21% Similarity=0.362 Sum_probs=174.5
Q ss_pred CCCCCCCCCC----------ChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHH
Q 026645 14 ETDSSLPPKE----------RRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKA 83 (235)
Q Consensus 14 ~~~~~~p~~~----------~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka 83 (235)
++++++||+. |||++||++||+|||++++|..++.+|++ .||||++|++++.++|+++|+++|||+ ||
T Consensus 28 ~~~R~lPWR~~~~~~~d~~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~-~fptpe~La~a~~eel~~~ir~lG~~~-KA 105 (287)
T 3n5n_X 28 QEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQ-KWPTLQDLASASLEEVNQLWAGLGYYS-RG 105 (287)
T ss_dssp HHCCCCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-HCCSHHHHHTSCHHHHHHHHTTSSCHH-HH
T ss_pred HcCCCCCCcCcCccccCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HCCCHHHHHcCCHHHHHHHHHHcCCHH-HH
Confidence 4678999986 58999999999999999999999999999 599999999999999999999999997 89
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHc-CCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCCCCCCCCHH
Q 026645 84 CNMKKIAKICLTKYDGDIPSSLDELLA-LPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPE 162 (235)
Q Consensus 84 ~~l~~~a~~i~~~~~g~~~~~~~~L~~-l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~ 162 (235)
++|+++|+.++++|+|++|+++++|++ |||||+|||++||+|+|+++ +|+||+||+||+.|+|+++.. .++.
T Consensus 106 ~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p-~~~VDt~V~Rv~~Rlg~i~~~------~~~~ 178 (287)
T 3n5n_X 106 RRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQA-TGVVDGNVARVLCRVRAIGAD------PSST 178 (287)
T ss_dssp HHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCC-CCCCCHHHHHHHHHHTTCCSC------TTSH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHhcCCC-CccccHHHHHHHHHhCCCCCC------CChH
Confidence 999999999999999999999999999 99999999999999999985 789999999999999998632 2223
Q ss_pred HHH----HHHHHhCCcccHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCccccc
Q 026645 163 QTR----EALQRWLPKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEYCPSAFK 213 (235)
Q Consensus 163 ~~~----~~l~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~ 213 (235)
+++ ..++.++|.+.|.+||++||+||+.||++++|+|+.|||++.|+++.+
T Consensus 179 ~~~~~l~~~a~~~lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~ 233 (287)
T 3n5n_X 179 LVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQR 233 (287)
T ss_dssp HHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhhHHHHh
Confidence 333 334778999999999999999999999999999999999999998754
No 6
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=5.7e-50 Score=361.17 Aligned_cols=206 Identities=25% Similarity=0.410 Sum_probs=186.2
Q ss_pred CCCCCCCC--CChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHH
Q 026645 15 TDSSLPPK--ERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKI 92 (235)
Q Consensus 15 ~~~~~p~~--~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~ 92 (235)
+++++||+ +|||++||++||+|||++++|.+++.+|++ .||||++|+++++++|.++|+++|||+ ||++|+++|+.
T Consensus 27 ~~r~lpw~~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~-~~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~ 104 (369)
T 3fsp_A 27 ERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFID-RFPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKE 104 (369)
T ss_dssp HCCCCGGGSCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHH-HCCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHH
T ss_pred hCCCCCCCCCCChHHHHHHHHHhccCcHHHHHHHHHHHHH-HCCCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHHH
Confidence 45678886 689999999999999999999999999999 599999999999999999999999997 89999999999
Q ss_pred HHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHhC
Q 026645 93 CLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWL 172 (235)
Q Consensus 93 i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (235)
+.++|+|++|+++++|++|||||+|||++||+|+|+++ +++||+||+|++.|+|+++.+.+ ...++++++..++.++
T Consensus 105 ~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v~Rv~~rl~~~~~~~~--~~~~~~~~~~~~~~~~ 181 (369)
T 3fsp_A 105 VKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVP-EPAVDGNVMRVLSRLFLVTDDIA--KPSTRKRFEQIVREIM 181 (369)
T ss_dssp HHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHTTCCSCTT--SHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHCCCC-cccccHHHHHHHHHHcCcccCcc--ccchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999984 88999999999999998764211 2345778888999999
Q ss_pred CcccHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCcccccC--CCCCCCCCccc
Q 026645 173 PKEEWVRINPLLVGFGQTICTPLRPRCGMCTVSEYCPSAFKE--SSTSSSKSKKS 225 (235)
Q Consensus 173 p~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~--~~~~~~k~~~~ 225 (235)
|.+.|..+|++||+||+.||++++|+|+.|||++.|.++... ..+|.+++|++
T Consensus 182 p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~PvK~~kk~ 236 (369)
T 3fsp_A 182 AYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTA 236 (369)
T ss_dssp CSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCC
T ss_pred ChhhHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCCcccCCccccccC
Confidence 999999999999999999999999999999999999987653 56665554444
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00 E-value=1.6e-38 Score=267.31 Aligned_cols=167 Identities=18% Similarity=0.238 Sum_probs=151.9
Q ss_pred CCCCCCC-CCChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC------HHHHhcCCHHHHHHhhccCCChHHHHHHHH
Q 026645 15 TDSSLPP-KERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHT------AEAIDKADEATIKDLIYPVAFYTRKACNMK 87 (235)
Q Consensus 15 ~~~~~p~-~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt------~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~ 87 (235)
++..++| .+|||++||++||||||+++++.+++.+|++.+||| |++|+++++++|+++|+++||+++||++|+
T Consensus 19 ~~~~~~~~~~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~ 98 (218)
T 1pu6_A 19 NAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLI 98 (218)
T ss_dssp TSCTTSSTTTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHH
T ss_pred cCCCcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHH
Confidence 3333333 489999999999999999999999999999955999 999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC----CChhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCCCCCCCCHHH
Q 026645 88 KIAKICLTKYDG----DIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQ 163 (235)
Q Consensus 88 ~~a~~i~~~~~g----~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~ 163 (235)
++|+.+.++|+| +.|+++++|++|||||+|||++|++|+++++ +||||+|++|++.|+|+. ..++++
T Consensus 99 ~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~-~~~vD~~v~Ri~~rlg~~--------~~~~~~ 169 (218)
T 1pu6_A 99 DLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKE-VMVVDKYSYLFLKKLGIE--------IEDYDE 169 (218)
T ss_dssp HHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS-CCCCCHHHHHHHHHTTCC--------CCSHHH
T ss_pred HHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHHCCCC-ccccCHHHHHHHHHcCCC--------CCCHHH
Confidence 999999999988 7889999999999999999999999999984 999999999999999875 257899
Q ss_pred HHHHHHH----hCC------------cccHHHHHHHHHHHHhh
Q 026645 164 TREALQR----WLP------------KEEWVRINPLLVGFGQT 190 (235)
Q Consensus 164 ~~~~l~~----~~p------------~~~~~~~~~~l~~~G~~ 190 (235)
++..++. ++| .+.|.++|..|+.||+.
T Consensus 170 ~~~~l~~~~p~~lp~~~~~~~~~~~~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 170 LQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp HHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCcchhhhcccccchHHHHHHHHHHHHHHhhh
Confidence 9999988 676 34599999999999997
No 8
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=100.00 E-value=5.1e-33 Score=232.41 Aligned_cols=148 Identities=14% Similarity=0.212 Sum_probs=133.7
Q ss_pred CCChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCC--ChHHHHHHHHHHHH--HHHHhc
Q 026645 22 KERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVA--FYTRKACNMKKIAK--ICLTKY 97 (235)
Q Consensus 22 ~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G--~~~~Ka~~l~~~a~--~i~~~~ 97 (235)
.++||++||++||||||+++++.+++.+|. +.|+.+++++|+++|+++| ||++||++|+++++ .+.+.+
T Consensus 41 ~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~-------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~ 113 (214)
T 3fhf_A 41 NEEWFKELCFCILTANFTAEGGIRIQKEIG-------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIV 113 (214)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHT-------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHH
T ss_pred CCChHHHHHHHHHcCCCCHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHh
Confidence 468999999999999999999999999995 6799999999999999999 99999999999999 888888
Q ss_pred CC--CChhhHHHHH-cCCCCcHHHHHHHHHHhcCCcceee-cchHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHhCC
Q 026645 98 DG--DIPSSLDELL-ALPGIGPKMANMVMTLGWFNVQGIC-VDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLP 173 (235)
Q Consensus 98 ~g--~~~~~~~~L~-~l~GIG~~tA~~il~~~~~~~~~~p-vDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l~~~~p 173 (235)
++ ++|+++++|+ +|||||+|||++||+++ +. +.+| ||+|++|+++|+|+++.. + +.+|
T Consensus 114 ~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~-~~~~vVDthv~Ri~~RlG~~~~~--------~--------k~lt 175 (214)
T 3fhf_A 114 ESFENEKVAREFLVRNIKGIGYKEASHFLRNV-GY-DDVAIIDRHILRELYENNYIDEI--------P--------KTLS 175 (214)
T ss_dssp HHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TC-CSCCCCCHHHHHHHHHTTSSSSC--------C--------SSCC
T ss_pred cccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CC-CCcccCcHHHHHHHHHcCCCCCC--------C--------CcCC
Confidence 77 7899999999 99999999999999998 56 5677 999999999999998631 1 3356
Q ss_pred cccHHHHHHHHHHHHhhhcCC
Q 026645 174 KEEWVRINPLLVGFGQTICTP 194 (235)
Q Consensus 174 ~~~~~~~~~~l~~~G~~iC~~ 194 (235)
...|.++|..|+.||+.+|.+
T Consensus 176 ~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 176 RRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCC
Confidence 678999999999999999976
No 9
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=100.00 E-value=6e-32 Score=228.95 Aligned_cols=154 Identities=14% Similarity=0.203 Sum_probs=135.5
Q ss_pred CCCCC--CCChHHHHHHHHHhccccHHHHHHHHHHHHHc-C----CCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHH
Q 026645 17 SSLPP--KERRFAVLLSALLSSLTKDKVADGALQRLLQN-G----LHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKI 89 (235)
Q Consensus 17 ~~~p~--~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~-~----~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~ 89 (235)
..+|+ .+|||++||++||+|||+++++..++.+|.+. + ||||++|+++++++|. .+||+.+||++|+++
T Consensus 50 ~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr----~~Gl~~~Ka~~l~~~ 125 (232)
T 4b21_A 50 CTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLH----ECGFSKLKSQEIHIV 125 (232)
T ss_dssp CCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHH----TTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHH----HcCCcHHHHHHHHHH
Confidence 34554 46999999999999999999999999999984 3 9999999999999864 569999999999999
Q ss_pred HHHHHHhcCCCCh-----------hhHHHHHcCCCCcHHHHHHHHHHhcCCcceeec-chHHHHHHHHhcCcCCCCCCCC
Q 026645 90 AKICLTKYDGDIP-----------SSLDELLALPGIGPKMANMVMTLGWFNVQGICV-DTHVHRICNRLGWVTQPGTKQK 157 (235)
Q Consensus 90 a~~i~~~~~g~~~-----------~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pv-Dt~v~Rv~~Rlg~~~~~~~~~~ 157 (235)
|+++.+ |.+| +.+++|++|||||+|||++|++|+++++++||| |+||+|++.|++..+.
T Consensus 126 A~~~~~---g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~------ 196 (232)
T 4b21_A 126 AEAALN---KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSS------ 196 (232)
T ss_dssp HHHHHT---TCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSS------
T ss_pred HHHHHh---CCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCCC------
Confidence 999987 5443 578999999999999999999999999999999 9999999999977642
Q ss_pred CCCHHHHHHHHHHhCCcccHHHHHHH
Q 026645 158 TSSPEQTREALQRWLPKEEWVRINPL 183 (235)
Q Consensus 158 ~~~~~~~~~~l~~~~p~~~~~~~~~~ 183 (235)
..+++++++..+.|-|...|..++.|
T Consensus 197 ~~~~~~~~~~~e~w~P~rs~A~~yLw 222 (232)
T 4b21_A 197 KPQTEEVEKLTKPCKPYRTIAAWYLW 222 (232)
T ss_dssp CCCHHHHHHHTGGGTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccCHHHHHHHHHH
Confidence 45788899999999999888777765
No 10
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.98 E-value=2.7e-32 Score=231.48 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=142.6
Q ss_pred CCCCChHHHHHHHHHhccccHHHHHHHHHHHHHc---CCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHh
Q 026645 20 PPKERRFAVLLSALLSSLTKDKVADGALQRLLQN---GLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTK 96 (235)
Q Consensus 20 p~~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~---~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~ 96 (235)
+..+|||++||++||+|||+++++..++.+|++. .||||++|+++++++| +++||+++||++|+++|+.+.+.
T Consensus 46 ~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L----r~~G~~~~KA~~I~~~A~~i~~~ 121 (233)
T 2h56_A 46 PTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL----RQAGVSKRKIEYIRHVCEHVESG 121 (233)
T ss_dssp ECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH----HHTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHhC
Confidence 3568999999999999999999999999999985 2679999999999998 55699999999999999999886
Q ss_pred c-CCC-C---h--hhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHHH
Q 026645 97 Y-DGD-I---P--SSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQ 169 (235)
Q Consensus 97 ~-~g~-~---~--~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l~ 169 (235)
+ +++ + | +++++|++|||||+|||++||+|+++++++||||+|+.|++.|+++... ...++++++..++
T Consensus 122 ~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~~-----~~~~~~~~~~~~e 196 (233)
T 2h56_A 122 RLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNG-----EGDGKKLLIYHGK 196 (233)
T ss_dssp SSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSS-----CSCHHHHHHHHHG
T ss_pred CCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHhccCC-----CCCCHHHHHHHHH
Confidence 5 332 2 5 7899999999999999999999999998899999999999999876432 2457889999999
Q ss_pred HhCCcccHHHHHHHHHHHHhhh
Q 026645 170 RWLPKEEWVRINPLLVGFGQTI 191 (235)
Q Consensus 170 ~~~p~~~~~~~~~~l~~~G~~i 191 (235)
.|.|...|..+|.|.++.+..-
T Consensus 197 ~~~P~~~~a~~~lw~~~~~~~~ 218 (233)
T 2h56_A 197 AWAPYETVACLYLWKAAGTFAE 218 (233)
T ss_dssp GGTTCHHHHHHHHHHHHTHHHH
T ss_pred HcCcHHHHHHHHHHhccccccc
Confidence 9999999999998888877654
No 11
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.97 E-value=7.1e-32 Score=216.21 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=110.3
Q ss_pred CChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCCh
Q 026645 23 ERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIP 102 (235)
Q Consensus 23 ~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~ 102 (235)
+|||++||++||||||++++|.+++.+|++ .||||++|++++.++|.++|+++|||++||++|+++++.+ +|
T Consensus 29 ~dP~~vLVs~ILsqQT~~~~v~~~~~~l~~-~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~-------vp 100 (161)
T 4e9f_A 29 HDPWKLLIATIFLNRTSGKMAIPVLWKFLE-KYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEY-------LT 100 (161)
T ss_dssp TSHHHHHHHHHHTTTSCHHHHHHHHHHHHH-HSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHH-------HH
T ss_pred CChHHHHHHHHHHhhCcHHHHHHHHHHHHH-HCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCc-------CC
Confidence 699999999999999999999999999999 5999999999999999999999999999999999998754 56
Q ss_pred hhHHHHHcCCCCcHHHHHHHHHHhcCC-cceeecchHHHHHHHHhcC
Q 026645 103 SSLDELLALPGIGPKMANMVMTLGWFN-VQGICVDTHVHRICNRLGW 148 (235)
Q Consensus 103 ~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~pvDt~v~Rv~~Rlg~ 148 (235)
+++++|++|||||+|||++|++|++|+ ..++|+|.++.|++.++..
T Consensus 101 ~~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl~~ 147 (161)
T 4e9f_A 101 KQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWE 147 (161)
T ss_dssp SCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHH
T ss_pred CChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHHHc
Confidence 778899999999999999999999996 4688999999999999843
No 12
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.2e-31 Score=222.05 Aligned_cols=148 Identities=21% Similarity=0.277 Sum_probs=126.9
Q ss_pred CChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCC--ChHHHHHHHHHHHHHHH------
Q 026645 23 ERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVA--FYTRKACNMKKIAKICL------ 94 (235)
Q Consensus 23 ~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G--~~~~Ka~~l~~~a~~i~------ 94 (235)
+|||+.||++||||||++++|.+++.+| ++.|+.+++++|+++|+++| ||++||++|+++|+++.
T Consensus 31 ~~~fe~Lv~~ILsqqts~~~~~~~~~~L-------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~ 103 (207)
T 3fhg_A 31 EVWFRELTLCLLTANSSFISAYQALNCL-------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEE 103 (207)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH-------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHH-------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 5899999999999999999999999998 47899999999999999665 99999999999999653
Q ss_pred -HhcCCCCh-hhHHHHHcCCCCcHHHHHHHHHH-hcCCcceeecchHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHh
Q 026645 95 -TKYDGDIP-SSLDELLALPGIGPKMANMVMTL-GWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRW 171 (235)
Q Consensus 95 -~~~~g~~~-~~~~~L~~l~GIG~~tA~~il~~-~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l~~~ 171 (235)
+.++|..| +++++|++|||||+|||++||+| ++ .++||||+|++|++.|+|+++.. +...
T Consensus 104 l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~--~~~~~vD~~v~Ri~~rlg~~~~~---------------~~k~ 166 (207)
T 3fhg_A 104 IKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY--FDLAIIDRHIIDFMRRIGAIGET---------------NVKQ 166 (207)
T ss_dssp HHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC--CSSCCCCHHHHHHHHHTTSSCCC---------------CCSC
T ss_pred HHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhCC--CCcceecHHHHHHHHHcCCCCcc---------------cccc
Confidence 34445566 78999999999999999999998 55 47899999999999999997531 1123
Q ss_pred CCcccHHHHHHHHHHHHhhhcCC
Q 026645 172 LPKEEWVRINPLLVGFGQTICTP 194 (235)
Q Consensus 172 ~p~~~~~~~~~~l~~~G~~iC~~ 194 (235)
++...|.++|..|+.||+.+|.+
T Consensus 167 ~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 167 LSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCC
Confidence 45667889999999999998864
No 13
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.97 E-value=3e-31 Score=222.58 Aligned_cols=143 Identities=17% Similarity=0.109 Sum_probs=123.0
Q ss_pred CCChHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCC--ChHHHHHHHHHHHHHH---HHh
Q 026645 22 KERRFAVLLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVA--FYTRKACNMKKIAKIC---LTK 96 (235)
Q Consensus 22 ~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G--~~~~Ka~~l~~~a~~i---~~~ 96 (235)
.++||+.||++||||||+++++.+++.+| |+.|+.+++++|+++|+++| |+++||++|+++|+.+ .+.
T Consensus 47 ~~~~fe~Lv~~ILsqqts~~~~~~a~~~L-------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~ig~l~~~ 119 (219)
T 3n0u_A 47 EEDLFCELSFCVLTANWSAEGGIRAQKEI-------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNL 119 (219)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHH-------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGTTTHHHH
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999988 67899999999999999999 9999999999999975 666
Q ss_pred cCCCChhhHHHHH-cCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHhC
Q 026645 97 YDGDIPSSLDELL-ALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWL 172 (235)
Q Consensus 97 ~~g~~~~~~~~L~-~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (235)
+++++|+++++|+ ++||||+|||++||++ ++..++||||+|++|++.|+|+++.........++.++++.+..+.
T Consensus 120 ~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a 195 (219)
T 3n0u_A 120 VKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVA 195 (219)
T ss_dssp HHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeeecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHH
Confidence 7899999999999 9999999999999999 7776799999999999999999865222222244555666655543
No 14
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.97 E-value=3.5e-30 Score=217.38 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=128.3
Q ss_pred CCCCCChHHHHHHHHHhccccHHHHHHHHHHHHHcCC--CCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHh
Q 026645 19 LPPKERRFAVLLSALLSSLTKDKVADGALQRLLQNGL--HTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTK 96 (235)
Q Consensus 19 ~p~~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~--pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~ 96 (235)
.+..+|||+.||++||+|||+++++..++.+|.+. | |||++|+++++++|. ++||+++||++|+++|+.+.+.
T Consensus 55 ~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~-~G~ptp~~la~~~~e~Lr----~~G~~~~KA~~i~~lA~~~~~g 129 (225)
T 2yg9_A 55 LAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGL-PGGVVPAALLKVSGDDLR----GVGLSWAKVRTVQAAAAAAVSG 129 (225)
T ss_dssp CCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTS-TTCSCHHHHTTSCHHHHH----HTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHH-hCcCCHHHHHcCCHHHHH----HCCCcHHHHHHHHHHHHHHHhC
Confidence 45578999999999999999999999999999994 7 999999999999874 5599999999999999999872
Q ss_pred cC-------CCChhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeec-chHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHH
Q 026645 97 YD-------GDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICV-DTHVHRICNRLGWVTQPGTKQKTSSPEQTREAL 168 (235)
Q Consensus 97 ~~-------g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pv-Dt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l 168 (235)
.. .+.++.+++|++|||||+|||++|++|+++++++||| |+|++|++.|++ + + +++++..
T Consensus 130 ~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~--~-~---------~~~~~~~ 197 (225)
T 2yg9_A 130 QIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLY--P-G---------EDWRDVT 197 (225)
T ss_dssp SSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS--T-T---------SCHHHHH
T ss_pred CcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhC--C-H---------HHHHHHH
Confidence 10 0122459999999999999999999999999889999 999999999998 1 1 2366778
Q ss_pred HHhCCcccHHHHHHH
Q 026645 169 QRWLPKEEWVRINPL 183 (235)
Q Consensus 169 ~~~~p~~~~~~~~~~ 183 (235)
+.|.|...|..+|.|
T Consensus 198 e~~~P~r~~a~~~Lw 212 (225)
T 2yg9_A 198 ARWAPYRSLASRYLW 212 (225)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 999999998888866
No 15
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.3e-29 Score=214.23 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=132.2
Q ss_pred CCCC--CC-ChHHHHHHHHHhccccHHHHHHHHHHHHHc-----CCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHH
Q 026645 18 SLPP--KE-RRFAVLLSALLSSLTKDKVADGALQRLLQN-----GLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKI 89 (235)
Q Consensus 18 ~~p~--~~-~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~-----~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~ 89 (235)
.+++ .+ |||+.||++||+|||+++++..++.+| +. .||||++|+.++.++|.. +||+++||++|+++
T Consensus 40 r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr~----~G~~~rKa~~i~~~ 114 (228)
T 3s6i_A 40 RPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMRA----CGFSARKIDSLKSI 114 (228)
T ss_dssp CCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHHH----HTCCHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHHH----cCCCHHHHHHHHHH
Confidence 4444 34 999999999999999999999999999 63 269999999999999755 49999999999999
Q ss_pred HHHHHHhcCCCCh-----------hhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecc-hHHHHHHHHhcCcCCCCCCCC
Q 026645 90 AKICLTKYDGDIP-----------SSLDELLALPGIGPKMANMVMTLGWFNVQGICVD-THVHRICNRLGWVTQPGTKQK 157 (235)
Q Consensus 90 a~~i~~~~~g~~~-----------~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvD-t~v~Rv~~Rlg~~~~~~~~~~ 157 (235)
|+.+.+ |.+| +.++.|++|||||+|||++||+|+++++++|||| .|++|++.+++..+.
T Consensus 115 A~~~~~---g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~------ 185 (228)
T 3s6i_A 115 AEATIS---GLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPK------ 185 (228)
T ss_dssp HHHHHH---TSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSS------
T ss_pred HHHHHc---CCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCC------
Confidence 999986 6664 3489999999999999999999999999899996 578999999876542
Q ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHH
Q 026645 158 TSSPEQTREALQRWLPKEEWVRINPLL 184 (235)
Q Consensus 158 ~~~~~~~~~~l~~~~p~~~~~~~~~~l 184 (235)
..+++++++..+.|-|...|..+|.|-
T Consensus 186 ~~~~~~~~~~~e~w~P~r~~A~~yLw~ 212 (228)
T 3s6i_A 186 IPTKMYVLKHSEICAPFRTAAAWYLWK 212 (228)
T ss_dssp CCCHHHHHHHHGGGTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 457888999999999998888877653
No 16
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.97 E-value=1.3e-29 Score=221.35 Aligned_cols=161 Identities=16% Similarity=0.197 Sum_probs=137.0
Q ss_pred CCCCCCCCCChHHHHHHHHHhccccHHHHHHHHHHHHHc-------------CCCCHHHHhcCCHHHHHHhhccCCChHH
Q 026645 15 TDSSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQN-------------GLHTAEAIDKADEATIKDLIYPVAFYTR 81 (235)
Q Consensus 15 ~~~~~p~~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~-------------~~pt~~~la~a~~e~l~~~l~~~G~~~~ 81 (235)
.|.++| ++||||.||++||+||++++++.+++.+|.+. .||||++|+.+++++|.++ ++||
T Consensus 106 ~glR~~-~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~~--g~g~--- 179 (290)
T 3i0w_A 106 EGIRIL-RQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEEC--TAGF--- 179 (290)
T ss_dssp TTCCCC-CCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHHT--TCGG---
T ss_pred CCCCCC-CCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHHc--CCch---
Confidence 345665 49999999999999999999999999999873 3899999999999999884 4554
Q ss_pred HHHHHHHHHHHHHHhcC-------CCChhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCC
Q 026645 82 KACNMKKIAKICLTKYD-------GDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGT 154 (235)
Q Consensus 82 Ka~~l~~~a~~i~~~~~-------g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~ 154 (235)
||++|+++|+.+.+.+. .+.+++++.|++|||||+|||++|++|+++++++||||+||+|++.|+|+.+
T Consensus 180 Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~~~~---- 255 (290)
T 3i0w_A 180 RAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAP---- 255 (290)
T ss_dssp GHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCT----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhcCCC----
Confidence 79999999999987431 3567899999999999999999999999999889999999999999999864
Q ss_pred CCCCCCHHHHHHHH-HHhCCcccHHHHHHHHHHHHhh
Q 026645 155 KQKTSSPEQTREAL-QRWLPKEEWVRINPLLVGFGQT 190 (235)
Q Consensus 155 ~~~~~~~~~~~~~l-~~~~p~~~~~~~~~~l~~~G~~ 190 (235)
..+++++++.+ +.|-| ..+..++.|+.+|+.
T Consensus 256 ---~~~~~~i~~~~~~~~~p--~~~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 256 ---DVSLKKIRDFGREKFGS--LSGFAQQYLFYYARE 287 (290)
T ss_dssp ---TCCHHHHHHHHHHHHGG--GHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHhhcch--HHHHHHHHHHHhhhh
Confidence 35788898887 66665 455566777888875
No 17
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.96 E-value=3.4e-28 Score=211.67 Aligned_cols=155 Identities=21% Similarity=0.295 Sum_probs=135.1
Q ss_pred CCCCCCCCCChHHHHHHHHHhccccHHHHHHHHHHHHH------------cCCCCHHHHhcCCHHHHHHhhccCCChHHH
Q 026645 15 TDSSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQ------------NGLHTAEAIDKADEATIKDLIYPVAFYTRK 82 (235)
Q Consensus 15 ~~~~~p~~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~------------~~~pt~~~la~a~~e~l~~~l~~~G~~~~K 82 (235)
.|.+++...||||+||++||+|||+++++.+++.+|.+ +.||||++|+++++++| +++||+++|
T Consensus 103 ~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~r 178 (282)
T 1mpg_A 103 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKR 178 (282)
T ss_dssp TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHH
Confidence 45566767999999999999999999999999999974 24899999999999998 455999999
Q ss_pred HHHHHHHHHHHHHh-cCCCC----hhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCcCCCCCCCC
Q 026645 83 ACNMKKIAKICLTK-YDGDI----PSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWVTQPGTKQK 157 (235)
Q Consensus 83 a~~l~~~a~~i~~~-~~g~~----~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~~~~~~~~~ 157 (235)
|++|+++|+.+.+. ++++. ++.+++|++|||||+|||++|++|+++++++||+|+|+.| ++++
T Consensus 179 a~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l~---------- 246 (282)
T 1mpg_A 179 AEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIK--QRFP---------- 246 (282)
T ss_dssp HHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHST----------
T ss_pred HHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHH--HHhc----------
Confidence 99999999999985 55543 4579999999999999999999999999889999999877 5552
Q ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHH
Q 026645 158 TSSPEQTREALQRWLPKEEWVRINPLLV 185 (235)
Q Consensus 158 ~~~~~~~~~~l~~~~p~~~~~~~~~~l~ 185 (235)
..+++++++.++.|.|.+.|..+|.|..
T Consensus 247 ~~~~~~~~~~~~~~~P~r~~a~~~lw~~ 274 (282)
T 1mpg_A 247 GMTPAQIRRYAERWKPWRSYALLHIWYT 274 (282)
T ss_dssp TCCHHHHHHHHGGGTTCHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3568899999999999999999998754
No 18
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.96 E-value=3e-28 Score=218.26 Aligned_cols=165 Identities=20% Similarity=0.299 Sum_probs=129.4
Q ss_pred CCCCCCCChHHHHHHHHHhccccHHHHHHHHHHHHHc--------------CCCCHHHHhcCCHHHHHHhhccCCChHHH
Q 026645 17 SSLPPKERRFAVLLSALLSSLTKDKVADGALQRLLQN--------------GLHTAEAIDKADEATIKDLIYPVAFYTRK 82 (235)
Q Consensus 17 ~~~p~~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~--------------~~pt~~~la~a~~e~l~~~l~~~G~~~~K 82 (235)
.+++ .+||||+||++||+|||+++++..++.+|++. .||||++|+.++.+ +.|+.+||. .|
T Consensus 145 lR~~-~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~e---e~Lr~~Gl~-~R 219 (360)
T 2xhi_A 145 VRLL-RQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVE---AHLRKLGLG-YR 219 (360)
T ss_dssp CCCC-CCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHH---HHHHHTTCT-TH
T ss_pred CCCC-CCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHH---HHHHHcCCc-HH
Confidence 3444 48999999999999999999999999999883 48999999999764 234556884 68
Q ss_pred HHHHHHHHHHHHHhcCCC--------Ch--hhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHh-cCcCC
Q 026645 83 ACNMKKIAKICLTKYDGD--------IP--SSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRL-GWVTQ 151 (235)
Q Consensus 83 a~~l~~~a~~i~~~~~g~--------~~--~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rl-g~~~~ 151 (235)
|++|+++|+.+.+.|+|+ +| +++++|++|||||+|||++|++|+++++++||||+||.|++.|+ |+...
T Consensus 220 A~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl~~~ 299 (360)
T 2xhi_A 220 ARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPT 299 (360)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHHHHHHhCcccc
Confidence 999999999999988775 44 78999999999999999999999999988999999999999996 76542
Q ss_pred CCCCCCCCCH---HHHHH-HHHHhCCcccHHHHHHHHHHH
Q 026645 152 PGTKQKTSSP---EQTRE-ALQRWLPKEEWVRINPLLVGF 187 (235)
Q Consensus 152 ~~~~~~~~~~---~~~~~-~l~~~~p~~~~~~~~~~l~~~ 187 (235)
.. ..+..+. +++++ ..+.|-|...|..++.|-.++
T Consensus 300 ~~-~~k~~~~~~~~~l~~~~~e~w~p~~~~a~~yLw~~~~ 338 (360)
T 2xhi_A 300 TS-QAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 338 (360)
T ss_dssp SC-SCSSCCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred cc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 0011222 22222 356677777777777665443
No 19
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.95 E-value=9.3e-28 Score=210.14 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=131.1
Q ss_pred CCCCCC--CCChHHHHHHHHHhccccHHHHHHHHHHHHHc-C------------CCCHHHHhcCCHHHHHHhhccCCChH
Q 026645 16 DSSLPP--KERRFAVLLSALLSSLTKDKVADGALQRLLQN-G------------LHTAEAIDKADEATIKDLIYPVAFYT 80 (235)
Q Consensus 16 ~~~~p~--~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~-~------------~pt~~~la~a~~e~l~~~l~~~G~~~ 80 (235)
|..++. .+||||.||++||+|||+++++.+++.+|.+. + ||||++|+++++++| +++||+.
T Consensus 107 glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~L----r~~G~~~ 182 (295)
T 2jhn_A 107 GFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGL----RECGLSR 182 (295)
T ss_dssp TCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHH----HHTTCCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHHH----HHcCCCH
Confidence 445665 68999999999999999999999999999884 2 899999999999887 4559999
Q ss_pred HHHHHHHHHHHHHHHhcCC--CCh--hhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecc-hHHHHHHHHhcCcCCCCCC
Q 026645 81 RKACNMKKIAKICLTKYDG--DIP--SSLDELLALPGIGPKMANMVMTLGWFNVQGICVD-THVHRICNRLGWVTQPGTK 155 (235)
Q Consensus 81 ~Ka~~l~~~a~~i~~~~~g--~~~--~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvD-t~v~Rv~~Rlg~~~~~~~~ 155 (235)
+||++|+++|+. .++++ .+| +.++.|++|||||+|||++|++|+++ +++|||| .|++|++.|++....
T Consensus 183 rKa~~i~~~A~~--g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g~~~---- 255 (295)
T 2jhn_A 183 RKAELIVEIAKE--ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRRAVSRLYFNGE---- 255 (295)
T ss_dssp HHHHHHHHHHTC--SSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHSTTC----
T ss_pred HHHHHHHHHHHC--CCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHHHHHHHhcCCC----
Confidence 999999999998 33332 233 36899999999999999999999999 8999995 555669999843321
Q ss_pred CCCCCHHHHHHHHHHhCCcccHHHHHHHHH
Q 026645 156 QKTSSPEQTREALQRWLPKEEWVRINPLLV 185 (235)
Q Consensus 156 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~l~ 185 (235)
+..+++++++..+.|.|...|..+|.|..
T Consensus 256 -~~~~~~~~~~~~e~~~p~r~~a~~~Lw~~ 284 (295)
T 2jhn_A 256 -IQSAEKVREIARERFGRFARDILFYLFLY 284 (295)
T ss_dssp -CCCHHHHHHHHHHHTGGGHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 13578889999999999999988887754
No 20
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=96.16 E-value=0.087 Score=42.17 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCC--CCHHHHhcCCHHHHHHhhccCCC--hHHHHHHHHHHHHHHHH---hc
Q 026645 25 RFAVLLSALLSSLTKDKVADGALQRLLQNGL--HTAEAIDKADEATIKDLIYPVAF--YTRKACNMKKIAKICLT---KY 97 (235)
Q Consensus 25 ~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~--pt~~~la~a~~e~l~~~l~~~G~--~~~Ka~~l~~~a~~i~~---~~ 97 (235)
-||.|+-+.+..-.++..+.+-...+.+. | .+|+.+|..+++++++++..-|. ++.|.+.+++=|+++.+ +|
T Consensus 31 LFE~L~Le~fQAGLSW~tIL~KRe~fr~A-F~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~ 109 (183)
T 2ofk_A 31 LFEMICLEGQQAGLSWITVLKKRENYRAC-FHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNG 109 (183)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHTHHHHHHH-TGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCHHHHHHhHHHHHHH-HcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 49999999999999999999988888874 4 58999999999999999998887 45677777777777553 44
Q ss_pred CC----------------------CChh-------hHHHHHc--CCCCcHHHHHHHHHH
Q 026645 98 DG----------------------DIPS-------SLDELLA--LPGIGPKMANMVMTL 125 (235)
Q Consensus 98 ~g----------------------~~~~-------~~~~L~~--l~GIG~~tA~~il~~ 125 (235)
|+ ++|. .-+.|.+ ++-|||.|+.++|.-
T Consensus 110 Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvGpT~~yafmQA 168 (183)
T 2ofk_A 110 ESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQA 168 (183)
T ss_dssp CCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred CCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecChHHHHHHHHH
Confidence 32 1110 2355664 888999999888765
No 21
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=96.09 E-value=0.095 Score=42.02 Aligned_cols=100 Identities=13% Similarity=0.047 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCC--CCHHHHhcCCHHHHHHhhccCCC--hHHHHHHHHHHHHHHH---Hhc
Q 026645 25 RFAVLLSALLSSLTKDKVADGALQRLLQNGL--HTAEAIDKADEATIKDLIYPVAF--YTRKACNMKKIAKICL---TKY 97 (235)
Q Consensus 25 ~f~~lv~~iLsqqt~~~~~~~~~~~l~~~~~--pt~~~la~a~~e~l~~~l~~~G~--~~~Ka~~l~~~a~~i~---~~~ 97 (235)
-||.|+-+.+..-.++..+.+-...+.+. | .+|+.||..+++++++++..-|. ++.|.+.+++=|+++. ++|
T Consensus 31 LFE~L~LEgfQAGLSW~tIL~KRe~fR~A-F~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~ 109 (186)
T 2jg6_A 31 LFKLLALESQHAGLSWLTILKKKEAYEEA-FYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAY 109 (186)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHH-TGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHhHHHHHHH-HcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 49999999999999999999998888874 4 58999999999999999998887 4567777777676654 344
Q ss_pred CC----------------------CCh-------hhHHHHHc--CCCCcHHHHHHHHHH
Q 026645 98 DG----------------------DIP-------SSLDELLA--LPGIGPKMANMVMTL 125 (235)
Q Consensus 98 ~g----------------------~~~-------~~~~~L~~--l~GIG~~tA~~il~~ 125 (235)
|+ ++| ..-+.|.+ ++-|||.|+.++|.-
T Consensus 110 gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvGpt~~YafmQA 168 (186)
T 2jg6_A 110 GSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEA 168 (186)
T ss_dssp SCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCCHHHHHHHHHH
T ss_pred CCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeechHHHHHHHHH
Confidence 32 122 12355665 889999999998865
No 22
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=94.04 E-value=0.12 Score=34.83 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHH
Q 026645 45 GALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKI 92 (235)
Q Consensus 45 ~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~ 92 (235)
....+|.+.++-|.++|+.++.++|.++. |++..||..|+..|+.
T Consensus 18 ~~~~kL~e~Gi~TvedlA~~~~~eL~~i~---gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 18 DLAFKLAARGVCTLEDLAEQGIDDLADIE---GLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHHHHTTTCCSHHHHHTSCHHHHHTSS---SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHcCCHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 34577888899999999999999998864 9999999999999987
No 23
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=92.95 E-value=0.23 Score=46.70 Aligned_cols=92 Identities=18% Similarity=0.324 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCC-CCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHH-------------------------HHHh
Q 026645 43 ADGALQRLLQNGL-HTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKI-------------------------CLTK 96 (235)
Q Consensus 43 ~~~~~~~l~~~~~-pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~-------------------------i~~~ 96 (235)
....+..|++.++ -++.+|..++.++|..+ =||....|..|.+.-+. +.+.
T Consensus 455 G~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l---~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~ 531 (586)
T 4glx_A 455 GDKIIDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAY 531 (586)
T ss_dssp CHHHHHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHhCCCHHHHhcc---cCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHH
Confidence 4556777887765 68999999998887654 37777777777654333 2222
Q ss_pred cCCCCh----hhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHh
Q 026645 97 YDGDIP----SSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRL 146 (235)
Q Consensus 97 ~~g~~~----~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rl 146 (235)
| +++. .+.++|.+++|||+.+|..|..| |. |.+...++.+|
T Consensus 532 f-~sl~~l~~a~~e~l~~i~giG~~~A~si~~f-f~-------~~~n~~~i~~L 576 (586)
T 4glx_A 532 F-GTLEALEAASIEELQKVPDVGIVVASHVHNF-FA-------EESNRNVISEL 576 (586)
T ss_dssp H-CSHHHHHHCCHHHHTTSTTCCHHHHHHHHHH-HH-------SHHHHHHHHHH
T ss_pred c-CCHHHHHccCHHHHhcCCCccHHHHHHHHHH-Hc-------CHHHHHHHHHH
Confidence 2 2332 24688999999999999999887 22 33555666665
No 24
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=92.47 E-value=0.35 Score=32.49 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=40.7
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTK 96 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~ 96 (235)
....|.+.||-|.++|+.++.++|.++ -||...|+.-|++-|+.++..
T Consensus 18 ~a~~L~~~Gf~tve~vA~~~~~eL~~I---~G~dE~~a~~l~~~A~~~l~~ 65 (70)
T 1u9l_A 18 FATVLVEEGFSTLEELAYVPMKELLEI---EGLDEPTVEALRERAKNALAT 65 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHSCHHHHTTS---TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCcHHHHHcCCHHHHhhc---cCCCHHHHHHHHHHHHHHHHH
Confidence 456777789999999999999998665 499999999999999887653
No 25
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=92.17 E-value=0.067 Score=43.73 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=23.9
Q ss_pred ChhhHHHHHcCCCCcHHHHHHHHHHhcCC
Q 026645 101 IPSSLDELLALPGIGPKMANMVMTLGWFN 129 (235)
Q Consensus 101 ~~~~~~~L~~l~GIG~~tA~~il~~~~~~ 129 (235)
+.+..+.|.+|||||+|+|.=+..+.+..
T Consensus 21 l~~LI~~l~~LPGIG~KsA~RlA~hLL~~ 49 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRLAFFIINM 49 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHcC
Confidence 45677889999999999999887776654
No 26
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=91.38 E-value=0.26 Score=32.74 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=19.7
Q ss_pred hHHHHHcCCCCcHHHHHHHHHHh
Q 026645 104 SLDELLALPGIGPKMANMVMTLG 126 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~~ 126 (235)
..+.|.+++|||+++|..+..+.
T Consensus 44 ~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 44 SVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CHHHHhcCCCCCHHHHHHHHHHH
Confidence 56889999999999999887663
No 27
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=91.37 E-value=0.3 Score=42.68 Aligned_cols=51 Identities=27% Similarity=0.303 Sum_probs=32.9
Q ss_pred hccCCChHHHHHHHHHHHHH----HHHhcCCCC-hhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 73 IYPVAFYTRKACNMKKIAKI----CLTKYDGDI-PSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 73 l~~~G~~~~Ka~~l~~~a~~----i~~~~~g~~-~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
|.++| ...|..|.++.+. -.++...+. |.....|+++||||+++|..+-.-
T Consensus 62 LpGIG--~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 62 LPGVG--TKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp STTCC--HHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred CCCCc--HHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc
Confidence 45555 4557777776543 011111233 677899999999999999987543
No 28
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=91.19 E-value=0.1 Score=43.12 Aligned_cols=29 Identities=38% Similarity=0.473 Sum_probs=23.8
Q ss_pred ChhhHHHHHcCCCCcHHHHHHHHHHhcCC
Q 026645 101 IPSSLDELLALPGIGPKMANMVMTLGWFN 129 (235)
Q Consensus 101 ~~~~~~~L~~l~GIG~~tA~~il~~~~~~ 129 (235)
+.+..+.|.+|||||+|||.=+..+.+..
T Consensus 7 l~~LI~~l~~LPGIG~KSA~RlA~hLL~~ 35 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRLAFHLFEQ 35 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhHCCCCCHHHHHHHHHHHHcC
Confidence 44678899999999999998877776654
No 29
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=90.61 E-value=0.57 Score=40.91 Aligned_cols=56 Identities=27% Similarity=0.331 Sum_probs=38.3
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 68 TIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 68 ~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
++..++...|=..-|+..-+++|..|. .+..++.+ ..+|.+|||||+++|+.|.-+
T Consensus 21 ~ia~l~e~~~~~~~rv~AYr~Aa~~l~-~l~~~i~~-~~~l~~LpGIG~~~A~kI~E~ 76 (335)
T 2fmp_A 21 ELANFEKNVSQAIHKYNAYRKAASVIA-KYPHKIKS-GAEAKKLPGVGTKIAEKIDEF 76 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH-HCSSCCCC-HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHH-hCCccccC-HHHHhcCCCCcHHHHHHHHHH
Confidence 344444433434446777888888864 45555544 456999999999999999865
No 30
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=90.09 E-value=0.18 Score=41.28 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.1
Q ss_pred hhHHHHHcCCCCcHHHHHHHHHHhcCC
Q 026645 103 SSLDELLALPGIGPKMANMVMTLGWFN 129 (235)
Q Consensus 103 ~~~~~L~~l~GIG~~tA~~il~~~~~~ 129 (235)
.+.+.|.++||||+|||+-|..---++
T Consensus 120 ~d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 120 GNVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999987654443
No 31
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=89.58 E-value=0.2 Score=33.75 Aligned_cols=22 Identities=55% Similarity=0.915 Sum_probs=19.6
Q ss_pred hHHHHHcCCCCcHHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~ 125 (235)
..+.|.++||||+++|..|+..
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHH
Confidence 5678999999999999999875
No 32
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=89.51 E-value=0.34 Score=43.72 Aligned_cols=69 Identities=23% Similarity=0.453 Sum_probs=34.3
Q ss_pred HHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHH------------HHHhcCCC------Ch---------
Q 026645 50 LLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKI------------CLTKYDGD------IP--------- 102 (235)
Q Consensus 50 l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~------------i~~~~~g~------~~--------- 102 (235)
|.. .|.+..++..++.++|.++ ||+.++...|+.+-+. +.++|+.- +|
T Consensus 534 lkr-~ygs~savr~~pv~elrel----g~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g~ 608 (685)
T 4gfj_A 534 LKR-KYGSASAVRRLPVEELREL----GFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELGA 608 (685)
T ss_dssp HHH-HSSCHHHHHHSCHHHHHTT----SCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSCC
T ss_pred HHH-hhccHHHHHhccHHHHHHc----CCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhccCC
Confidence 444 5899999999999998776 9999998888765443 44555421 11
Q ss_pred ----------hhHHHHHcCCCCcHHHHHHHH
Q 026645 103 ----------SSLDELLALPGIGPKMANMVM 123 (235)
Q Consensus 103 ----------~~~~~L~~l~GIG~~tA~~il 123 (235)
..++.|+.++||||+.|+-++
T Consensus 609 ~~~~~~eik~p~~k~ll~~~gv~p~la~r~~ 639 (685)
T 4gfj_A 609 TPKAAAEIKGPEFKFLLNIEGVGPKLAERIL 639 (685)
T ss_dssp GGGC---------------------------
T ss_pred CHHHHHHhcChhHHHhhcccCCCHHHHHHHH
Confidence 146778899999999988665
No 33
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=89.40 E-value=0.48 Score=41.84 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 76 VAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 76 ~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.| ..-|+..-+++|..|.. +..++.+. ++|.+|||||+++|+.|.-+
T Consensus 34 ~g-~~~r~~AYr~Aa~~l~~-l~~~i~~~-~~l~~lpGIG~~~A~kI~E~ 80 (360)
T 2ihm_A 34 EA-NEGRLLSFSRAASVLKS-LPCPVASL-SQLHGLPYFGEHSTRVIQEL 80 (360)
T ss_dssp TT-CHHHHHHHHHHHHHHHH-CSSCCCSG-GGGTTCTTCCHHHHHHHHHH
T ss_pred cC-CcHHHHHHHHHHHHHHh-CCcccCCH-HHHhcCCCCCHHHHHHHHHH
Confidence 35 44567777888888654 55555443 34999999999999999865
No 34
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=89.28 E-value=0.37 Score=33.47 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.1
Q ss_pred hHHHHHcCCCCcHHHHHHHHHHh
Q 026645 104 SLDELLALPGIGPKMANMVMTLG 126 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~~ 126 (235)
..++|.++||||+++|..+..+-
T Consensus 49 ~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 49 SREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHH
Confidence 56889999999999999998764
No 35
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=89.04 E-value=0.32 Score=32.95 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.2
Q ss_pred hHHHHHcCCCCcHHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~ 125 (235)
..++|.++||||+++|..+..+
T Consensus 54 ~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 54 SVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp CHHHHTTSSSTTSHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHH
Confidence 5788999999999999988765
No 36
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=88.90 E-value=0.25 Score=39.76 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=22.0
Q ss_pred hhHHHHHcCCCCcHHHHHHHHHHhcCC
Q 026645 103 SSLDELLALPGIGPKMANMVMTLGWFN 129 (235)
Q Consensus 103 ~~~~~L~~l~GIG~~tA~~il~~~~~~ 129 (235)
.+.+.|.++||||+++|.-|...--++
T Consensus 104 ~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 104 GDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp TCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999997654333
No 37
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=88.63 E-value=0.54 Score=41.07 Aligned_cols=50 Identities=24% Similarity=0.273 Sum_probs=30.2
Q ss_pred hccCCChHHHHHHHHHHHHH----HHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 73 IYPVAFYTRKACNMKKIAKI----CLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 73 l~~~G~~~~Ka~~l~~~a~~----i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
|.++| ...|..|.++.+. -+++....+| ..+.|+++||||++||..+-.-
T Consensus 62 lpGIG--~~~A~kI~E~l~tG~~~~le~l~~~~p-~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 62 IPGIG--KRMAEKIIEILESGHLRKLDHISESVP-VLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp STTCC--HHHHHHHHHHHHSSSCGGGGGCCTTHH-HHHHHHTSTTCCHHHHHHHHHT
T ss_pred CCCcc--HHHHHHHHHHHHcCCchHHHHHhhhhH-HHHHHhcCCCcCHHHHHHHHHc
Confidence 45555 4556677666442 0112223344 5566779999999999977543
No 38
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=88.60 E-value=0.34 Score=42.76 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=31.6
Q ss_pred ccCCChHHHHHHHHHHHHH----HHHhcC-CCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 74 YPVAFYTRKACNMKKIAKI----CLTKYD-GDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 74 ~~~G~~~~Ka~~l~~~a~~----i~~~~~-g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.++| ...|..|.++.+. -+++.. ...|.....|+++||||++||..+-.-
T Consensus 67 pGIG--~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 67 PYFG--EHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp TTCC--HHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred CCCC--HHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 4444 4557777666543 011111 245567789999999999999987443
No 39
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=88.49 E-value=0.91 Score=39.61 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 81 RKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 81 ~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
-|+..-.++|..|.. +..++.+ .++|.+|||||+++|+.|.-+
T Consensus 34 ~r~~AYr~Aa~~l~~-l~~~i~~-~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 34 WRALGYAKAINALKS-FHKPVTS-YQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHHHHHHHHHHHHS-CCSCCCC-HHHHHTSTTCCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHh-CCccccC-HHHHhcCCCccHHHHHHHHHH
Confidence 467777888888643 5555544 456999999999999999866
No 40
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=88.39 E-value=0.57 Score=41.70 Aligned_cols=52 Identities=10% Similarity=0.090 Sum_probs=36.4
Q ss_pred HhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 71 DLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 71 ~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
+++.-.| ..-|+..-+++|..|. .+..++.+. +.|.+|||||+.+|+.|.-+
T Consensus 48 ~~~e~~g-~~~rv~AYr~Aa~~l~-~l~~~i~~~-~~l~~lpGIG~~ia~kI~E~ 99 (381)
T 1jms_A 48 ENDELRE-NEGSCLAFMRASSVLK-SLPFPITSM-KDTEGIPCLGDKVKSIIEGI 99 (381)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHH-TCSSCCCSG-GGGTTCSSCCHHHHHHHHHH
T ss_pred HHHHhhC-CcHHHHHHHHHHHHHH-hCCccccCH-HHHhcCCCCcHHHHHHHHHH
Confidence 3333345 4557888888888864 455555443 34999999999999999865
No 41
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=88.30 E-value=0.46 Score=33.15 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.0
Q ss_pred hHHHHHcCCCCcHHHHHHHHHHh
Q 026645 104 SLDELLALPGIGPKMANMVMTLG 126 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~~ 126 (235)
..++|.+++|||+++|..+..+.
T Consensus 62 s~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 62 SREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp CHHHHHTSSSCCSHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHH
Confidence 56889999999999999988764
No 42
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=88.30 E-value=0.31 Score=39.56 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.3
Q ss_pred hhHHHHHcCCCCcHHHHHHHHHH
Q 026645 103 SSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 103 ~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.+.+.|.++||||+|+|.-|...
T Consensus 105 ~d~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 105 EEVGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHH
Confidence 56789999999999999998754
No 43
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=87.23 E-value=0.39 Score=31.36 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=18.9
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhcCC
Q 026645 105 LDELLALPGIGPKMANMVMTLGWFN 129 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il~~~~~~ 129 (235)
...|.++||||++.+..+|.. |+.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~-Fgs 26 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH-VKN 26 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH-CSS
T ss_pred HhHHHcCCCCCHHHHHHHHHH-cCC
Confidence 357889999999999888754 443
No 44
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=86.60 E-value=0.45 Score=35.08 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 026645 45 GALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICL 94 (235)
Q Consensus 45 ~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~ 94 (235)
...++|.+.||-|.++|+.++.++|.++ -|++..||..|++.|+.+.
T Consensus 36 ~~i~kL~eAG~~Tve~va~a~~~eL~~i---~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 36 NDVKKLEEAGFHTVEAVAYAPKKELINI---KGISEAKADKILAEAAKLV 82 (114)
T ss_dssp HHHHHHHTTCCSSGGGBTSSBHHHHHTT---TTCSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCcCcHHHHHhCCHHHHHHc---cCCCHHHHHHHHHHHHHHc
Confidence 3467788889999999999999988765 4888889999999988764
No 45
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=86.56 E-value=0.72 Score=44.01 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=49.4
Q ss_pred HHHHHHHcC-CCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHH-------------------------HHHHHhcCC
Q 026645 46 ALQRLLQNG-LHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIA-------------------------KICLTKYDG 99 (235)
Q Consensus 46 ~~~~l~~~~-~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a-------------------------~~i~~~~~g 99 (235)
.+..|.+.+ .-++.+|..+..++|.++ . ||...++..|.+.. +.+.+.|+
T Consensus 453 ~i~~L~~~g~I~~~~DL~~L~~e~L~~l-~--g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fg- 528 (667)
T 1dgs_A 453 LIERLLEKGLVRDVADLYHLRKEDLLGL-E--RMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFG- 528 (667)
T ss_dssp HHHHHHHTTSCSSGGGGGGGCCHHHHTT-S--SCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTS-
T ss_pred HHHHHHHcCCCCCHHHHHhcCHHHHhcc-c--ccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcC-
Confidence 445555543 368889988887777654 3 55555566665442 22233332
Q ss_pred CCh----hhHHHHHcCCCCcHHHHHHHHHH
Q 026645 100 DIP----SSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 100 ~~~----~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
++. .+.++|.+++|||+++|+.|..|
T Consensus 529 sl~~l~~As~eeL~~I~GIG~~~A~sI~~f 558 (667)
T 1dgs_A 529 TMDRLLEASLEELIEVEEVGELTARAILET 558 (667)
T ss_dssp BHHHHTTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred CHHHHHhCCHHHHHhccCcCHHHHHHHHHH
Confidence 222 35688999999999999999877
No 46
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=86.49 E-value=2.1 Score=40.80 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=51.4
Q ss_pred HHHHHHHHcCC-CCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHH-------------------------HHHhcC
Q 026645 45 GALQRLLQNGL-HTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKI-------------------------CLTKYD 98 (235)
Q Consensus 45 ~~~~~l~~~~~-pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~-------------------------i~~~~~ 98 (235)
+.+..|.+.++ -++.+|..+..++|..+ -||....+..|.+..+. +.+.|+
T Consensus 457 k~i~~L~~~g~I~~~aDL~~L~~~~L~~l---~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fg 533 (671)
T 2owo_A 457 KIIDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFG 533 (671)
T ss_dssp HHHHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCHHHHHhhCHHHhhcc---cccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcC
Confidence 34555666543 68999999988877654 36766667777665322 122221
Q ss_pred CCCh----hhHHHHHcCCCCcHHHHHHHHHH
Q 026645 99 GDIP----SSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 99 g~~~----~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
++. .+.++|.+++|||+++|..|..|
T Consensus 534 -sl~~l~~As~eeL~~i~GIG~~~A~sI~~f 563 (671)
T 2owo_A 534 -TLEALEAASIEELQKVPDVGIVVASHVHNF 563 (671)
T ss_dssp -SHHHHHTCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred -CHHHHHhCCHHHHhhcCCCCHHHHHHHHHH
Confidence 222 24688999999999999999877
No 47
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=86.25 E-value=0.63 Score=32.31 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.6
Q ss_pred hhHHHHHcCCCCcHHHHHHHHHH
Q 026645 103 SSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 103 ~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.....|.+|||||++....+|..
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHH
T ss_pred cHHHHHHhCCCCCHHHHHHHHHH
Confidence 45678999999999999888754
No 48
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=86.14 E-value=2 Score=30.27 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=38.6
Q ss_pred HHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHHh
Q 026645 58 AEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLG 126 (235)
Q Consensus 58 ~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 126 (235)
+-+|..++.++|.. |.++| ...|+.|.+.-.. .|.+ ...++|..++|||+++++.+...+
T Consensus 31 ~i~iN~a~~~~L~~-ipGIG--~~~A~~Il~~r~~-----~g~f-~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 31 LDLLNEGSARDLRS-LQRIG--PKKAQLIVGWREL-----HGPF-SQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHHSCHHHHHH-STTCC--HHHHHHHHHHHHH-----HCCC-SSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred CeehhhCCHHHHHH-CCCCC--HHHHHHHHHHHHh-----cCCc-CCHHHHHhCCCCCHHHHHHHHHCc
Confidence 34566677777765 45555 3456666554221 1444 456668999999999999887654
No 49
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=84.57 E-value=0.63 Score=38.06 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=19.1
Q ss_pred hHHHHHcCCCCcHHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.+..|.+++||||++|..|+..
T Consensus 86 lf~~L~sv~GIGpk~A~~Ils~ 107 (212)
T 2ztd_A 86 LFLTLLSVSGVGPRLAMAALAV 107 (212)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCcCCcCHHHHHHHHHh
Confidence 4677999999999999999864
No 50
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=84.05 E-value=0.74 Score=36.99 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=18.7
Q ss_pred hHHHHHcCCCCcHHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~ 125 (235)
....|.+++||||++|..+|..
T Consensus 70 ~f~~L~~v~GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 70 LFELLLSVSGVGPKVALALLSA 91 (191)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHh
Confidence 3457889999999999999865
No 51
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=83.77 E-value=2.2 Score=27.62 Aligned_cols=38 Identities=5% Similarity=0.217 Sum_probs=28.9
Q ss_pred HHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHH-HHHHHHHH
Q 026645 47 LQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRK-ACNMKKIA 90 (235)
Q Consensus 47 ~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~K-a~~l~~~a 90 (235)
...|..+ |.|.++|.+|+.|||.+++ | ... |+.|.+..
T Consensus 17 ~~~LL~~-Fgs~~~i~~As~eeL~~vi---g--~~~~A~~I~~~l 55 (63)
T 2a1j_A 17 CRSLMHH-VKNIAELAALSQDELTSIL---G--NAANAKQLYDFI 55 (63)
T ss_dssp HHHHHHH-CSSHHHHHTCCHHHHHHHH---S--CHHHHHHHHHHH
T ss_pred HHHHHHH-cCCHHHHHHCCHHHHHHHc---C--chHHHHHHHHHH
Confidence 4566674 9999999999999999994 5 234 77776543
No 52
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=83.15 E-value=0.32 Score=39.42 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=30.2
Q ss_pred CChhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCc
Q 026645 100 DIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWV 149 (235)
Q Consensus 100 ~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~ 149 (235)
.+..+.++|..|||||+++|..|+.+=-.. .| +.+--+..|++++
T Consensus 126 pITA~~~eL~~LpGIG~k~A~~IIeyRe~G--~F---~s~eDL~~RV~GI 170 (205)
T 2i5h_A 126 SITTRMHQLELLPGVGKKMMWAIIEERKKR--PF---ESFEDIAQRVKGI 170 (205)
T ss_dssp CBCSSSBGGGGSTTCCHHHHHHHHHHHHHS--CC---CSHHHHHHHSTTC
T ss_pred CccCCHHHHhcCCCcCHHHHHHHHHHHhcC--CC---CCHHHHHHhcCCC
Confidence 455577889999999999999999763211 22 1233455677654
No 53
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=82.85 E-value=0.42 Score=36.16 Aligned_cols=52 Identities=13% Similarity=0.307 Sum_probs=34.6
Q ss_pred HhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 61 IDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 61 la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
|-.|+.++|.. + -|++..||+.|. + +|.+ ...++|++++|||+++.+.+--+
T Consensus 57 iNtA~~~eL~~-L--pGiGp~~A~~II-------~--~GpF-~svedL~~V~GIg~k~~e~l~~~ 108 (134)
T 1s5l_U 57 LNNTNIAAFIQ-Y--RGLYPTLAKLIV-------K--NAPY-ESVEDVLNIPGLTERQKQILREN 108 (134)
T ss_dssp TTTSCGGGGGG-S--TTCTHHHHHHHH-------H--TCCC-SSGGGGGGCTTCCHHHHHHHHHH
T ss_pred CcccCHHHHHH-C--CCCCHHHHHHHH-------H--cCCC-CCHHHHHhCCCCCHHHHHHHHHh
Confidence 44566666655 2 377777887776 2 2444 45788889999999887766543
No 54
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=82.71 E-value=0.82 Score=32.37 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.6
Q ss_pred hHHHHHcCCCCcHHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~ 125 (235)
..+.|.++||||+++|..|+..
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHH
Confidence 4678999999999999999976
No 55
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=82.13 E-value=0.4 Score=36.29 Aligned_cols=21 Identities=14% Similarity=0.537 Sum_probs=19.1
Q ss_pred hHHHHHcCCCCcHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMT 124 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~ 124 (235)
+.++|.+||||||+.|..|..
T Consensus 61 ~~~eL~~LpGiGp~~A~~II~ 81 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIVK 81 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHH
Confidence 578899999999999999984
No 56
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=81.37 E-value=1.1 Score=39.86 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=31.4
Q ss_pred ccCCChHHHHHHHHHHHHH----HHHhcC-CCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 74 YPVAFYTRKACNMKKIAKI----CLTKYD-GDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 74 ~~~G~~~~Ka~~l~~~a~~----i~~~~~-g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.++| ..-|..|.++.+. -.++.. ...|.....|++++|||+++|..+-.-
T Consensus 86 pGIG--~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 86 PCLG--DKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp SSCC--HHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred CCCc--HHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc
Confidence 4444 4456666666543 111111 245667789999999999999987443
No 57
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=80.76 E-value=2.5 Score=29.45 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHH
Q 026645 83 ACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMT 124 (235)
Q Consensus 83 a~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~ 124 (235)
+.....++..+.. |...+ ..-+++..|+|||++++..+--
T Consensus 37 ~~~Y~KA~~sLk~-~P~~i-~s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 37 RFVFQKALRSLQR-YPLPL-RSGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp HHHHHHHHHHHHH-CCSCC-CSHHHHHTCTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCC-CCHHHHHHhhcccHHHHHHHHH
Confidence 4556666666543 44444 3567889999999999987753
No 58
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=80.39 E-value=1.1 Score=36.34 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=18.1
Q ss_pred HHHHHcCCCCcHHHHHHHHHH
Q 026645 105 LDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il~~ 125 (235)
.+.|.+++||||++|..+|..
T Consensus 72 f~~L~~V~GIGpk~A~~iL~~ 92 (203)
T 1cuk_A 72 FKELIKTNGVGPKLALAILSG 92 (203)
T ss_dssp HHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHhh
Confidence 457889999999999999874
No 59
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=80.23 E-value=0.42 Score=34.21 Aligned_cols=21 Identities=14% Similarity=0.537 Sum_probs=19.2
Q ss_pred hHHHHHcCCCCcHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMT 124 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~ 124 (235)
+.++|..+||||++.|..|..
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHH
T ss_pred CHHHHhHCCCCCHHHHHHHHH
Confidence 568899999999999999988
No 60
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=78.41 E-value=0.95 Score=30.24 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=35.1
Q ss_pred HHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHH
Q 026645 58 AEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMT 124 (235)
Q Consensus 58 ~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~ 124 (235)
+-+|..++.++|..+ .++| ..+|+.|.+ .+ .-...++|.+++|||+++++.+.-
T Consensus 18 ~idiN~a~~~~L~~i-pGIG--~~~A~~Il~-------~r---~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 18 PVSLNEASLEELMAL-PGIG--PVLARRIVE-------GR---PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp SEETTTCCHHHHTTS-TTCC--HHHHHHHHH-------TC---CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred ccChhhCCHHHHHhC-CCCC--HHHHHHHHH-------Hc---ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 344566777777654 4444 444555544 22 125678899999999999988753
No 61
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=78.19 E-value=1.7 Score=29.95 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=18.6
Q ss_pred hHHHHHcCCCCcHHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~ 125 (235)
....|..+||||+++|..++..
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~ 38 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTT 38 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 4567889999999999988864
No 62
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=77.46 E-value=0.65 Score=33.19 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=38.9
Q ss_pred CCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 56 HTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 56 pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
+.+-+|-.|+.++|.. |.++| ..+|+.|.+ + |.+ ...++|.+++|||+++.+-+.-+
T Consensus 15 ~~~vdiNtAs~~eL~~-lpGIG--~~~A~~IV~--------~-GpF-~s~edL~~V~Gig~~~~e~l~~~ 71 (97)
T 3arc_U 15 GEKIDLNNTNIAAFIQ-YRGLY--PTLAKLIVK--------N-APY-ESVEDVLNIPGLTERQKQILREN 71 (97)
T ss_dssp GTSEETTTSCGGGGGG-STTCT--THHHHHHHH--------H-CCC-SSGGGGGGCTTCCHHHHHHHHHT
T ss_pred CCceeCCcCCHHHHhH-CCCCC--HHHHHHHHH--------c-CCC-CCHHHHHhccCCCHHHHHHHHHH
Confidence 3334555677887765 35444 456777766 1 444 45788999999999998887654
No 63
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=76.01 E-value=1.8 Score=28.39 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=19.2
Q ss_pred hHHHHHcCCCCcHHHHHHHHHHhcC
Q 026645 104 SLDELLALPGIGPKMANMVMTLGWF 128 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~~~~ 128 (235)
....|..+||||+++|..++.. |+
T Consensus 12 ~~~~L~~i~giG~~~a~~Ll~~-fg 35 (75)
T 1x2i_A 12 QRLIVEGLPHVSATLARRLLKH-FG 35 (75)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HC
T ss_pred HHHHHcCCCCCCHHHHHHHHHH-cC
Confidence 4567889999999999888864 44
No 64
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=75.59 E-value=2.5 Score=34.19 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=18.2
Q ss_pred hhHHHHHcCCCCcHHHHHHHHHH
Q 026645 103 SSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 103 ~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
...++|..++|||+++|..+..+
T Consensus 191 a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 191 ASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp CCHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHH
Confidence 34677888899999988888765
No 65
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=75.13 E-value=1.9 Score=29.91 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=18.2
Q ss_pred hHHHHHcCCCCcHHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~ 125 (235)
....|..+||||+++|..++..
T Consensus 30 ~~~~L~~IpgIG~~~A~~Ll~~ 51 (91)
T 2a1j_B 30 VTECLTTVKSVNKTDSQTLLTT 51 (91)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 4567889999999999988764
No 66
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=72.21 E-value=5.9 Score=27.26 Aligned_cols=39 Identities=5% Similarity=0.196 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHH
Q 026645 47 LQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIA 90 (235)
Q Consensus 47 ~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a 90 (235)
...|..+ |.+.+.|.+|+.++|.+++ |- ..+|+.|.+..
T Consensus 31 ~~~LL~~-FgSl~~i~~AS~eEL~~vi---g~-~~~A~~I~~~l 69 (84)
T 1z00_B 31 CRSLMHH-VKNIAELAALSQDELTSIL---GN-AANAKQLYDFI 69 (84)
T ss_dssp HHHHHHH-SSCHHHHHHSCHHHHHHHH---SC-HHHHHHHHHHH
T ss_pred HHHHHHH-cCCHHHHHHCCHHHHHHHh---Cc-hHHHHHHHHHH
Confidence 4566664 9999999999999999994 52 22267776644
No 67
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=71.13 E-value=5.2 Score=37.24 Aligned_cols=25 Identities=32% Similarity=0.739 Sum_probs=21.5
Q ss_pred ChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 101 IPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 101 ~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.+.....|++++||||++|..++..
T Consensus 88 ~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 88 VPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp SCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred hHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 4567889999999999999988764
No 68
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=69.71 E-value=5.1 Score=35.48 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLT 95 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~ 95 (235)
..++|.++ |.|.+.|.+|+.+||.++ . |....||+.|++....+.-
T Consensus 327 iae~Lv~~-FGsLq~Il~AS~eEL~~V-e--GIGe~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 327 IGYNVVRM-FKTLDQISKASVEDLKKV-E--GIGEKRARAISESISSLKH 372 (377)
T ss_dssp HHHHHHHH-HCSHHHHTTCCHHHHTTS-T--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCHHHHHhCCHHHHHhc-c--CccHHHHHHHHHHHHHHhc
Confidence 45777774 999999999999998666 4 4446789999988887654
No 69
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=67.65 E-value=6.5 Score=35.55 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=16.7
Q ss_pred HHHHHcCCCCcHHHHHHHHH
Q 026645 105 LDELLALPGIGPKMANMVMT 124 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il~ 124 (235)
...|.+||||||.+|.-+|-
T Consensus 467 eamLtAIaGIGp~tAeRLLE 486 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLK 486 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHH
Confidence 46788999999999988873
No 70
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=67.00 E-value=3.1 Score=38.83 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=21.8
Q ss_pred ChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 101 IPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 101 ~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.+.....|++++||||++|..++.-
T Consensus 92 ~~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 92 LPPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp SCHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hHHHHHHHhCCCCcCHHHHHHHHHc
Confidence 4567888999999999999999875
No 71
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=66.63 E-value=1.2 Score=42.10 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=0.0
Q ss_pred hHHHHHcCCCCcHHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~ 125 (235)
+.++|.+++|||+++|..|..|
T Consensus 559 s~eeL~~I~GIG~~~A~sI~~f 580 (615)
T 3sgi_A 559 STDQLAAVEGVGPTIAAAVTEW 580 (615)
T ss_dssp ----------------------
T ss_pred CHHHHhhCCCCCHHHHHHHHHH
Confidence 4577888888888888888766
No 72
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=66.15 E-value=4.2 Score=35.98 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCh----hhHHHHHcCCCCcHHHHHHHH
Q 026645 89 IAKICLTKYDGDIP----SSLDELLALPGIGPKMANMVM 123 (235)
Q Consensus 89 ~a~~i~~~~~g~~~----~~~~~L~~l~GIG~~tA~~il 123 (235)
+++.++++|| .++ ...++|.++.|||++.|..|.
T Consensus 327 iae~Lv~~FG-sLq~Il~AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 327 IGYNVVRMFK-TLDQISKASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHC-SHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHhC-CHHHHHhCCHHHHHhccCccHHHHHHHH
Confidence 4777888885 343 467899999999999998774
No 73
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=64.37 E-value=7.3 Score=25.94 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHH
Q 026645 85 NMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANM 121 (235)
Q Consensus 85 ~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~ 121 (235)
.|.++|+. .|.+.++|..++|||++-.+-
T Consensus 34 ~L~~iA~~--------~P~t~~eL~~i~Gvg~~k~~~ 62 (77)
T 2rhf_A 34 TLEALAAR--------QPRTLAELAEVPGLGEKRIEA 62 (77)
T ss_dssp HHHHHHHH--------CCCSHHHHTTSTTTCHHHHHH
T ss_pred HHHHHHHh--------CCCCHHHHhhCCCCCHHHHHH
Confidence 45555554 488899999999999876654
No 74
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=60.41 E-value=1.8 Score=35.98 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHcCCCCcHHHHHHHHHH
Q 026645 105 LDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il~~ 125 (235)
.+.|.++||||+++|.-|...
T Consensus 47 ~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 47 QSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp ---------------------
T ss_pred HHHHHhccCCCHHHHHHHHHH
Confidence 366778888888888877543
No 75
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=60.12 E-value=30 Score=23.11 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.++++-+.+.|..++.++|.++
T Consensus 22 Y~~~F~~~~~d~~~~l~~lt~~DL~~l 48 (81)
T 1ucv_A 22 YRDHFAAGGYSSLGMVLRMNAQDVRAL 48 (81)
T ss_dssp GHHHHHHTTCCBHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHcCHHHHHhC
Confidence 445566667777999999999999987
No 76
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=59.61 E-value=11 Score=25.98 Aligned_cols=29 Identities=21% Similarity=0.501 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHH
Q 026645 84 CNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMAN 120 (235)
Q Consensus 84 ~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~ 120 (235)
..|.++|+. .|.+.++|..++|||+.-..
T Consensus 41 ~tL~eiA~~--------~P~t~~eL~~i~Gvg~~k~~ 69 (89)
T 1wud_A 41 ATLIEMAEQ--------MPITASEMLSVNGVGMRKLE 69 (89)
T ss_dssp HHHHHHHHH--------CCCSHHHHHTSTTCCHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHhhCCCCCHHHHH
Confidence 345555554 58889999999999986554
No 77
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=59.34 E-value=8.6 Score=26.21 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHH
Q 026645 84 CNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMAN 120 (235)
Q Consensus 84 ~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~ 120 (235)
..|.++|+. .|.+.++|..++|||+.-.+
T Consensus 35 ~tL~~iA~~--------~P~t~~eL~~i~Gvg~~k~~ 63 (85)
T 2kv2_A 35 VTLKKLAES--------LSSDPEVLLQIDGVTEDKLE 63 (85)
T ss_dssp HHHHHHHHH--------CCSCHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHhhCCCCCHHHHH
Confidence 345555554 58889999999999986544
No 78
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=58.18 E-value=15 Score=34.27 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=30.3
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhH-----HHHHcCCCCcHHHHHHHH
Q 026645 66 EATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSL-----DELLALPGIGPKMANMVM 123 (235)
Q Consensus 66 ~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~-----~~L~~l~GIG~~tA~~il 123 (235)
.+.+.++++--|....+|..|.+. .+ .++.+.. ..|.++||||+|||.-|+
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~------G~-~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~ 148 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA------GI-DSLERLREAAESGELAGLKGFGAKSAATIL 148 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT------TC-CSHHHHHHHHHHTTTTTSTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc------CC-CCHHHHHHHHhhCccccCCCCCHHHHHHHH
Confidence 445666665556656666666542 00 1122222 257789999999999883
No 79
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=57.05 E-value=6 Score=28.94 Aligned_cols=43 Identities=7% Similarity=0.177 Sum_probs=28.1
Q ss_pred hHHHHHcCCCCcHHHHHHHHHHhcCCccee---ecchHHHHHHHHh
Q 026645 104 SLDELLALPGIGPKMANMVMTLGWFNVQGI---CVDTHVHRICNRL 146 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~~~~~~~~~---pvDt~v~Rv~~Rl 146 (235)
..-.|..+.|||+.+|..|+.-+--.+..- .-|..+.++..-+
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred eHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 456789999999999999986533222211 1355666666555
No 80
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=56.99 E-value=40 Score=28.52 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=36.1
Q ss_pred CCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHHhcCCc
Q 026645 55 LHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNV 130 (235)
Q Consensus 55 ~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~ 130 (235)
|-+...|...+.++++.+.....++.. |- .+|- .-...+|.+-.|||++||+-+| .+||.+
T Consensus 374 fesiagilatdleeiermyeegrlsee-ay---raav----------eiqlaeltkkegvgrktaerll-rafgnp 434 (519)
T 2csb_A 374 FESIAGILATDLEEIERMYEEGRLSEE-AY---RAAV----------EIQLAELTKKEGVGRKTAERLL-RAFGNP 434 (519)
T ss_dssp HSSHHHHHTSCHHHHHHHHHHTSSCHH-HH---HHHH----------HHHHHHHHTSTTCCHHHHHHHH-HHHSSH
T ss_pred HHHHHHHHhccHHHHHHHHHcccccHH-HH---HHHH----------HHHHHHHhhhcccchhHHHHHH-HHhCCH
Confidence 666666777777777766555444422 10 0111 1124667888899999997654 456654
No 81
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.38 E-value=8.8 Score=29.39 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=19.8
Q ss_pred hHHHHHcCCCCcHHHHHHHHHHh
Q 026645 104 SLDELLALPGIGPKMANMVMTLG 126 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~~ 126 (235)
..-.|..+.|||+.+|..|+.-+
T Consensus 21 v~~aLt~I~GIG~~~A~~I~~~~ 43 (148)
T 3j20_O 21 LRWALTAIKGIGINFATMVCRVA 43 (148)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHH
T ss_pred ehhhhhhccCcCHHHHHHHHHHh
Confidence 46789999999999999998654
No 82
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=52.37 E-value=12 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=18.3
Q ss_pred ChhhHHHHHcCCCCcHHHHHHH
Q 026645 101 IPSSLDELLALPGIGPKMANMV 122 (235)
Q Consensus 101 ~~~~~~~L~~l~GIG~~tA~~i 122 (235)
.|.+.++|..++|||+.-..-+
T Consensus 52 ~P~t~~eL~~I~Gvg~~K~~~y 73 (103)
T 2e1f_A 52 RPTTVENVKRIDGVSEGKAAML 73 (103)
T ss_dssp CCCSHHHHTTSTTCCHHHHHHT
T ss_pred CCCCHHHHhcCCCCCHHHHHHH
Confidence 5888999999999999766543
No 83
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=52.16 E-value=30 Score=29.01 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 026645 45 GALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLT 95 (235)
Q Consensus 45 ~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~ 95 (235)
...++|.+.++.|.++++.++.++|.+. .|++..++..+...|+...+
T Consensus 14 ~~~~kL~~~gi~t~~~~~~~~~~~L~~~---~gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 14 STAEKLVEAGYIDFMKIATATVGELTDI---EGISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp HHHHHHHHHTCCSHHHHHTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcHHHHHhCCHHHHHHh---hCcCHHHHHHHHHHHHHhhh
Confidence 3467777779999999999999998665 48888888888888877543
No 84
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=51.48 E-value=14 Score=26.09 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHH
Q 026645 84 CNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMAN 120 (235)
Q Consensus 84 ~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~ 120 (235)
..|.++|+. .|.+.++|..++|||+.-..
T Consensus 50 ~tL~eiA~~--------~P~t~~eL~~I~Gvg~~k~~ 78 (101)
T 2rrd_A 50 VTLKKLAES--------LSSDPEVLLQIDGVTEDKLE 78 (101)
T ss_dssp HHHHHHHHH--------CCCCHHHHHTSTTCCHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHhhCCCCCHHHHH
Confidence 355666554 58899999999999986554
No 85
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=50.83 E-value=13 Score=24.57 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=27.1
Q ss_pred HHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHH
Q 026645 47 LQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKI 89 (235)
Q Consensus 47 ~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~ 89 (235)
.++|.+. |.++++|..++.++|.++ . |+...+|..|.+.
T Consensus 37 A~~Ll~~-fgsl~~l~~a~~eeL~~i-~--GIG~~~a~~I~~~ 75 (78)
T 1kft_A 37 RQMLLKY-MGGLQGLRNASVEEIAKV-P--GISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHHH-HSCHHHHHHCCHHHHTTS-S--STTSHHHHHHHHH
T ss_pred HHHHHHH-cCCHHHHHHCCHHHHHHC-C--CCCHHHHHHHHHH
Confidence 4455553 789999999999988654 4 4445677777654
No 86
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=50.73 E-value=8.3 Score=29.48 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=28.2
Q ss_pred hHHHHHcCCCCcHHHHHHHHHHhcCCccee---ecchHHHHHHHHh
Q 026645 104 SLDELLALPGIGPKMANMVMTLGWFNVQGI---CVDTHVHRICNRL 146 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~~~~~~~~~---pvDt~v~Rv~~Rl 146 (235)
..-.|+.+.|||+.+|..|+.-+--.+..- .-|..+.++..-+
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIM 73 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHH
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHH
Confidence 345789999999999999986543222111 2355666666554
No 87
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.53 E-value=9.8 Score=29.26 Aligned_cols=47 Identities=13% Similarity=0.271 Sum_probs=30.8
Q ss_pred CChh---hHHHHHcCCCCcHHHHHHHHHHhcCCccee---ecchHHHHHHHHh
Q 026645 100 DIPS---SLDELLALPGIGPKMANMVMTLGWFNVQGI---CVDTHVHRICNRL 146 (235)
Q Consensus 100 ~~~~---~~~~L~~l~GIG~~tA~~il~~~~~~~~~~---pvDt~v~Rv~~Rl 146 (235)
++|. ..-.|..|.|||+.+|..|+.-+--.+..- .-|..+.++..-+
T Consensus 19 ~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 71 (152)
T 3iz6_M 19 NVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVV 71 (152)
T ss_dssp CCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHH
T ss_pred cCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHH
Confidence 5553 567899999999999999986543222111 2355666666554
No 88
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=50.16 E-value=29 Score=34.70 Aligned_cols=65 Identities=8% Similarity=0.071 Sum_probs=33.0
Q ss_pred HHHhcCCHHHHHHhhccCCChH------HHHHHHHHHHHHHHHhcCCCChhh------HHHHHcCCCCcHHHHHHHHHH
Q 026645 59 EAIDKADEATIKDLIYPVAFYT------RKACNMKKIAKICLTKYDGDIPSS------LDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 59 ~~la~a~~e~l~~~l~~~G~~~------~Ka~~l~~~a~~i~~~~~g~~~~~------~~~L~~l~GIG~~tA~~il~~ 125 (235)
.+++..+++++..+ ++|-|. .-.+.|-....-.++.-|-++..+ ...|..++||||..|..|+.+
T Consensus 660 aElvki~pkdi~si--gvg~yQhdv~q~~L~~~L~~vv~d~VN~vGVdiNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~ 736 (1030)
T 3psf_A 660 LEYANLTSEEVRSL--SIHPHQNLLSSEQLSWALETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQS 736 (1030)
T ss_dssp HHHHTSCHHHHHTS--CCCTTGGGSCHHHHHHHHHHHHHHHHHHHCEEHHHHHTCHHHHTTGGGSTTCCHHHHHHHHHH
T ss_pred HHHhccCcccceee--eccccccccCHHHHHHHHHHHHHhhccccCccHHHhhcCcCCHHHHhhCCCCCHHHHHHHHHH
Confidence 35555666555333 334331 222333333333334444445444 455666788888877777654
No 89
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=49.29 E-value=21 Score=24.82 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=32.4
Q ss_pred CCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHH
Q 026645 55 LHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKIC 93 (235)
Q Consensus 55 ~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i 93 (235)
-.|.++|.+++.+++.++|...|++..-...|+++=+.-
T Consensus 34 Pfs~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRg 72 (91)
T 2kz5_A 34 PFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRG 72 (91)
T ss_dssp SSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 348999999999999999999999877677777765553
No 90
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=49.12 E-value=10 Score=29.27 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=19.6
Q ss_pred hHHHHHcCCCCcHHHHHHHHHHh
Q 026645 104 SLDELLALPGIGPKMANMVMTLG 126 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~~ 126 (235)
..-.|..+.|||+.+|..|+.-+
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~ 50 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVL 50 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHT
T ss_pred EEEeeecccccCHHHHHHHHHHc
Confidence 45689999999999999998653
No 91
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=48.97 E-value=56 Score=21.72 Aligned_cols=63 Identities=8% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCC
Q 026645 29 LLSALLSSLTKDKVADGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDG 99 (235)
Q Consensus 29 lv~~iLsqqt~~~~~~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g 99 (235)
++...+..-.....+.++...|.+. =.+.+-|.+++.+.|.++ |+ +..-|+.+.+.+-..|+-
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F~~~-ri~e~mL~Dl~~~~Lr~L----Gi---~eGDIIrVmk~l~~k~~r 67 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINFDRE-QLTEDMMPDINNSMLRTL----GL---REGDIVRVMKHLDKKFGR 67 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHT-TCCGGGGGGCCHHHHHHT----TC---CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHc-cCCHHHHhhCCHHHHHHc----CC---chhhHHHHHHHHHHHhCc
Confidence 3456677888889999999999884 678888889999887776 99 368899999998887764
No 92
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=48.10 E-value=44 Score=23.01 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=9.6
Q ss_pred HHHHHcCCCCcHHHHHHHH
Q 026645 105 LDELLALPGIGPKMANMVM 123 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il 123 (235)
.++|++++|+|+++.+-|.
T Consensus 43 e~dLlki~n~G~KSl~EI~ 61 (86)
T 3k4g_A 43 EVELLXTPNLGXXSLTEIX 61 (86)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHhhccccCcccHHHHH
Confidence 4445555555555554443
No 93
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=45.99 E-value=34 Score=34.90 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=14.9
Q ss_pred HHHHHcCCCCcHHHHHHHHHH
Q 026645 105 LDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il~~ 125 (235)
...|..++|||+..|..|+.+
T Consensus 713 ~~lL~~v~GlGp~kA~~Iv~~ 733 (1219)
T 3psi_A 713 ASALKYISGFGKRKAIDFLQS 733 (1219)
T ss_dssp HTTGGGSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 455666788888887777654
No 94
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=45.50 E-value=34 Score=31.65 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=36.5
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHH----HHHcCCCCcHHHHHHHHHH
Q 026645 68 TIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLD----ELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 68 ~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~----~L~~l~GIG~~tA~~il~~ 125 (235)
++.+++.-.|=..-|++.-+++|+.|.. +..++.+..+ .|.+|||||..++..+-.+
T Consensus 12 ~~a~~~e~~g~~~~r~~aYr~Aa~~l~~-~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~ 72 (575)
T 3b0x_A 12 EIGLMSEFLGDNPFRVRAYHQAARTLYD-LDTPIEEIAEKGKEALMELPGVGPDLAEKILEF 72 (575)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH-CCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHh-CCcchhhHhhcchhHHHhCCCCCHHHHHHHHHH
Confidence 3333433345333467778888888654 5555554433 2999999999998887754
No 95
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=44.69 E-value=46 Score=23.12 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=30.6
Q ss_pred CCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHH
Q 026645 55 LHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKI 92 (235)
Q Consensus 55 ~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~ 92 (235)
-.|.++|.+++.+++.++|+..|++..-...|+.+=+.
T Consensus 30 Pfs~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR 67 (92)
T 1skn_P 30 PVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRR 67 (92)
T ss_dssp SSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999999987656666655444
No 96
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.61 E-value=35 Score=23.68 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHH
Q 026645 55 LHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKI 92 (235)
Q Consensus 55 ~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~ 92 (235)
-.+.++|.+++.+++.++|+..+++..-...|+++-+.
T Consensus 34 PFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRR 71 (90)
T 2lz1_A 34 PFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRR 71 (90)
T ss_dssp SSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 34899999999999999999999987767777766554
No 97
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=44.48 E-value=32 Score=30.34 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 026645 45 GALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICL 94 (235)
Q Consensus 45 ~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~ 94 (235)
..+++|.+.+|-|.++|+.++..+|.+. .|++..|+..|++.+..+.
T Consensus 94 ~~~~~L~~ag~~tv~~~~~~~~~~L~~~---~gis~~~~~~i~~~a~~~~ 140 (400)
T 3lda_A 94 ADVKKLRESGLHTAEAVAYAPRKDLLEI---KGISEAKADKLLNEAARLV 140 (400)
T ss_dssp HHHHHHHHTTCCBHHHHHHSCHHHHHTS---TTCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCcHHHHHhCCHHHHHHH---hCCCHHHHHHHHHHHHHhc
Confidence 4467788889999999999999998665 4888889988888877643
No 98
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=44.17 E-value=50 Score=21.89 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|..++|-+++.+..++.++|.++
T Consensus 27 Y~~~F~~~gy~~~~~~~~lt~~DL~~l 53 (78)
T 1v38_A 27 YTSTLLLNGYETLDDLKDIKESHLIEL 53 (78)
T ss_dssp GHHHHHHHTCCBHHHHTTCCHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHhhcCHHHHHHc
Confidence 455666668999999999999999988
No 99
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=44.08 E-value=67 Score=21.22 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=10.4
Q ss_pred hHHHHHcCCCCcHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVM 123 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il 123 (235)
+.++|++++|+|+++.+-|.
T Consensus 39 s~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 39 TEEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp CHHHHHTSTTCCHHHHHHHH
T ss_pred CHHHHHHcCCCCHHHHHHHH
Confidence 34555555555555554443
No 100
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=43.92 E-value=13 Score=30.36 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=18.8
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhcCC
Q 026645 105 LDELLALPGIGPKMANMVMTLGWFN 129 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il~~~~~~ 129 (235)
...|..+||||+++|..++.. |+.
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~-FgS 190 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEH-FGS 190 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HCS
T ss_pred cccccCCCCcCHHHHHHHHHH-cCC
Confidence 356889999999999988764 543
No 101
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=43.20 E-value=25 Score=21.07 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=18.2
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHc
Q 026645 74 YPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLA 110 (235)
Q Consensus 74 ~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~ 110 (235)
...||+++ ...+.. ....+|++..+.++|.+
T Consensus 15 ~~MGF~d~-~~~~~A-----L~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 15 NDMGFFDF-DRNVAA-----LRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTTCCCH-HHHHHH-----HHHHTTCHHHHHHHHHC
T ss_pred HHcCCCcH-HHHHHH-----HHHhCCCHHHHHHHHHc
Confidence 44599754 222222 22345889888888864
No 102
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=42.45 E-value=32 Score=29.07 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.4
Q ss_pred HHHHcCCCCcHHHHHHHHHH
Q 026645 106 DELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 106 ~~L~~l~GIG~~tA~~il~~ 125 (235)
+.|+++|||++..|..|+..
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~ 256 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEH 256 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH
Confidence 67899999999999998754
No 103
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=41.47 E-value=11 Score=31.94 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.5
Q ss_pred cCCCCcHHHHHHHHH
Q 026645 110 ALPGIGPKMANMVMT 124 (235)
Q Consensus 110 ~l~GIG~~tA~~il~ 124 (235)
.+||||+|||.-++.
T Consensus 207 GVpGIG~KTA~kLL~ 221 (290)
T 1exn_A 207 GVEGIGAKRGYNIIR 221 (290)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCcCCHhHHHHHHH
Confidence 389999999987765
No 104
>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}
Probab=41.44 E-value=7.8 Score=30.94 Aligned_cols=15 Identities=33% Similarity=0.815 Sum_probs=13.6
Q ss_pred CCCCCCCcccccCcc
Q 026645 196 RPRCGMCTVSEYCPS 210 (235)
Q Consensus 196 ~P~C~~Cpl~~~C~~ 210 (235)
++.|..|++++.|+.
T Consensus 189 ~~~C~~Cs~~~~C~~ 203 (206)
T 4ic1_A 189 NWECKYCIFSVICPA 203 (206)
T ss_dssp TTSGGGCTTGGGCTT
T ss_pred CCCCCCCCCCCcCCC
Confidence 579999999999984
No 105
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=41.26 E-value=67 Score=21.50 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.+.++-+.+.|..++.++|.++
T Consensus 31 Y~~~F~~~gid~~~~L~~lt~~DL~~l 57 (82)
T 2kso_A 31 YTEHFMAAGYTAIEKVVQMTNDDIKRI 57 (82)
T ss_dssp HHHHHHHTTCCSHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHhCCHHHHHHC
Confidence 455666667878999999999999887
No 106
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=40.99 E-value=8.6 Score=28.63 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=21.3
Q ss_pred CCChh---hHHHHHcCCCCcHHHHHHHHHH
Q 026645 99 GDIPS---SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 99 g~~~~---~~~~L~~l~GIG~~tA~~il~~ 125 (235)
-++|. ..-.|..+.|||+.+|..|+.-
T Consensus 7 ~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~ 36 (126)
T 2vqe_M 7 VEIPRNKRVDVALTYIYGIGKARAKEALEK 36 (126)
T ss_dssp TCCCCSSBHHHHHTTSSSCCSHHHHHHTTT
T ss_pred ccCCCCcEeeeehhccccccHHHHHHHHHH
Confidence 35553 4568999999999999998754
No 107
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=40.40 E-value=41 Score=26.70 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHH
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKI 89 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~ 89 (235)
....|.+ .|+|++++.+++.++|.++ . |....+|+.|.+.
T Consensus 174 ~a~~Ll~-~fgs~~~l~~a~~e~L~~v-~--GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 174 TAERILE-RFGSLERFFTASKAEISKV-E--GIGEKRAEEIKKI 213 (219)
T ss_dssp HHHHHHH-HHSSHHHHTTCCHHHHHHS-T--TCCHHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHhCCHHHHhhC-C--CCCHHHHHHHHHH
Confidence 3455666 4899999999999998775 3 5556677777654
No 108
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=39.74 E-value=13 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHH
Q 026645 84 CNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMA 119 (235)
Q Consensus 84 ~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA 119 (235)
..|.++|+. .|.+.++|..++|||+.-.
T Consensus 50 ~tL~emA~~--------~P~t~~eL~~I~Gvg~~K~ 77 (113)
T 2dgz_A 50 KILVDMAKM--------RPTTVENVKRIDGVSEGKA 77 (113)
T ss_dssp HHHHHHHHH--------CCCSHHHHHHSSSCCTTGG
T ss_pred HHHHHHHHh--------CCCCHHHHHhCCCCCHHHH
Confidence 356666654 5888999999999998543
No 109
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=39.64 E-value=31 Score=33.51 Aligned_cols=76 Identities=20% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHHhcCCcceeecch------
Q 026645 64 ADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTLGWFNVQGICVDT------ 137 (235)
Q Consensus 64 a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt------ 137 (235)
|+.++|.. +. |+..++|+.|.+.- +.+ |.+ ..++.|..++|||+++-+-+..|..-.....|.|.
T Consensus 505 As~~~L~~-v~--GiG~~~A~~Iv~yR----~~~-G~f-~sr~~L~~V~giG~k~~ekl~~FL~i~G~~~pLD~t~VHPE 575 (785)
T 3bzc_A 505 ASAALLAR-IS--GLNSTLAQNIVAHR----DAN-GAF-RTRDELKKVSRLGEKTFEQAAGFLRVMNGDNPLDASAVHPE 575 (785)
T ss_dssp CCHHHHHT-ST--TCCHHHHHHHHHHH----HHH-CCC-SSGGGGGGSTTCCHHHHHHHGGGEECTTSSCGGGGSSCCGG
T ss_pred CCHHHHhh-cC--CCCHHHHHHHHHHH----Hhc-CCC-CCHHHHHhcCCCCHHHHHHhhheEEECCcccccccCcCCHH
Confidence 55666553 34 55567888876642 222 444 45788999999999998887766321111234553
Q ss_pred ---HHHHHHHHhcC
Q 026645 138 ---HVHRICNRLGW 148 (235)
Q Consensus 138 ---~v~Rv~~Rlg~ 148 (235)
-+.+++..+|.
T Consensus 576 sY~~a~kil~~~g~ 589 (785)
T 3bzc_A 576 TYPLVQRIAADTER 589 (785)
T ss_dssp GHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 24577777743
No 110
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=39.02 E-value=34 Score=28.49 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=66.7
Q ss_pred HHHHHhhccCCC----hHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcH--HH-HHHHH------HHhcCCc---
Q 026645 67 ATIKDLIYPVAF----YTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGP--KM-ANMVM------TLGWFNV--- 130 (235)
Q Consensus 67 e~l~~~l~~~G~----~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~--~t-A~~il------~~~~~~~--- 130 (235)
+++...+....| .+.|.++|.++..... +-.+++..++.|..+-|-.+ || +-++- ..++|..
T Consensus 86 ~~~~~Fl~~s~~n~Rl~~~KikRi~k~~~~~~--~~~dl~~l~~~LA~~l~s~~~~KTIVFAvKM~~Ya~r~~~g~~~~~ 163 (256)
T 1xqo_A 86 RDFLKYIETSPFLKIGVEARKKRALKACDYVP--NLEDLGLTLRQLSHIVGARREQKTLVFTIKILNYAYMCSRGVNRVL 163 (256)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHTTCCC--CTTCHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHhCCCCCcceeeeHHHHHHHHHHHHcCCCCCC
Confidence 466666665433 3678888877644432 33466777777777666553 22 33322 2233421
Q ss_pred ---ceeecchHHHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhhh
Q 026645 131 ---QGICVDTHVHRICNRLGWVTQPGTKQKTSSPEQTREALQRWLPKE--EWVRINPLLVGFGQTI 191 (235)
Q Consensus 131 ---~~~pvDt~v~Rv~~Rlg~~~~~~~~~~~~~~~~~~~~l~~~~p~~--~~~~~~~~l~~~G~~i 191 (235)
-.+|||.-+..+....|+++.+.... ...+++++..+....-.. ..-.+...++.+|..+
T Consensus 164 p~~IpIPvD~Rv~~lT~~s~l~~~~~~~~-mr~~~~~~~~W~~Var~sgIPplHLDSilWlig~~~ 228 (256)
T 1xqo_A 164 PFDIPIPVDYRVARLTWCAGLIDFPPEEA-LRRYEAVQKIWDAVARETGIPPLHLDTLLWLAGRAV 228 (256)
T ss_dssp CTTSCCCCCHHHHHHHHHTTSCSSCHHHH-HHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHhccccCChhhh-hhhhHHHHHHHHHHHHccCCCchhhhHHHHHhcccc
Confidence 14799999999999888876321000 022345555554431111 1344556666777654
No 111
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=39.00 E-value=71 Score=21.23 Aligned_cols=27 Identities=7% Similarity=0.170 Sum_probs=22.7
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.+++|.+.+.+..++.++|.++
T Consensus 30 Y~~~F~~~~~~~~~~l~~lt~~dL~~l 56 (83)
T 2qkq_A 30 YEESFAAAGFGSFELVSQISAEDLLRI 56 (83)
T ss_dssp GHHHHHHTTCCSHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHhhCCHHHHHHC
Confidence 455666667899999999999999997
No 112
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=38.32 E-value=82 Score=21.56 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=22.3
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.++++-+.+.|..++.++|.++
T Consensus 41 Y~~~F~~~g~~~~~~l~~lt~~DL~~l 67 (94)
T 1b0x_A 41 YKDNFTAAGYTTLEAVVHMSQDDLARI 67 (94)
T ss_dssp GHHHHHHTTCCSHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHhhCCHHHHHHC
Confidence 455566667889999999999999988
No 113
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=38.02 E-value=35 Score=21.58 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=12.4
Q ss_pred cCCCChhhHHHHHcCC
Q 026645 97 YDGDIPSSLDELLALP 112 (235)
Q Consensus 97 ~~g~~~~~~~~L~~l~ 112 (235)
.+|++..+.++|.+-|
T Consensus 42 ~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 42 SGGSVQGALDSLLNGD 57 (58)
T ss_dssp HTSCHHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHhCC
Confidence 4589999999988643
No 114
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=37.84 E-value=85 Score=20.75 Aligned_cols=27 Identities=7% Similarity=0.144 Sum_probs=22.3
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.+.++-+.+.|..++.++|.++
T Consensus 26 Y~~~F~~~~~~~~~~l~~lt~~dL~~l 52 (82)
T 1b4f_A 26 YKESFANAGFTSFDVVSQMMMEDILRV 52 (82)
T ss_dssp GHHHHHHTTCCSHHHHTTCCHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHhCCHHHHHHc
Confidence 455666667779999999999999987
No 115
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=37.30 E-value=67 Score=21.87 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.+.+|-+.+.+..++.++|.++
T Consensus 41 Y~~~F~~~g~~~le~l~~lt~~DL~~l 67 (86)
T 2k4p_A 41 YEEGLVHNGWDDLEFLSDITEEDLEEA 67 (86)
T ss_dssp GHHHHHTTTCCCHHHHTTCCHHHHHHT
T ss_pred HHHHHHHcCCChHHHHHhCCHHHHHHC
Confidence 445566667889999999999999987
No 116
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=36.89 E-value=13 Score=27.11 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.3
Q ss_pred hhHHHHHcCCCCcHHHHHHHHHHhc
Q 026645 103 SSLDELLALPGIGPKMANMVMTLGW 127 (235)
Q Consensus 103 ~~~~~L~~l~GIG~~tA~~il~~~~ 127 (235)
...+.|..++|||+-.|+-|+..+-
T Consensus 55 a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 55 APKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp SBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred CCHHHHHHccCCCHHHHHHHHHHHH
Confidence 3589999999999999999886653
No 117
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=36.85 E-value=16 Score=31.67 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=12.6
Q ss_pred cCCCCcHHHHHHHHH
Q 026645 110 ALPGIGPKMANMVMT 124 (235)
Q Consensus 110 ~l~GIG~~tA~~il~ 124 (235)
.+||||+|||--++.
T Consensus 236 gipGiG~KtA~kll~ 250 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQ 250 (341)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH
Confidence 589999999977764
No 118
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=36.42 E-value=71 Score=27.30 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 026645 44 DGALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICL 94 (235)
Q Consensus 44 ~~~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~ 94 (235)
....++|.+.+|-|.++++.++..+|.+.. |++..++..+.+.|....
T Consensus 45 ~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~---~~s~~~~~~~l~~~~~~~ 92 (349)
T 1pzn_A 45 PATAEKLREAGYDTLEAIAVASPIELKEVA---GISEGTALKIIQAARKAA 92 (349)
T ss_dssp HHHHHHHHTTTCCSHHHHHTCCHHHHHHHH---CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcHHHHHhCCHHHHHhhc---CCCHHHHHHHHHHHhhhc
Confidence 345677888899999999999999988763 777777877777766543
No 119
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=36.39 E-value=35 Score=27.75 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=12.7
Q ss_pred hHHHHHcCCCCcH-HHHHHHHHH
Q 026645 104 SLDELLALPGIGP-KMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~-~tA~~il~~ 125 (235)
+.++|.++ ||+ ++|..|..|
T Consensus 198 s~EeL~~V--IG~~~~A~~I~~~ 218 (220)
T 2nrt_A 198 SLEEIARV--IGSTEIARRVLDI 218 (220)
T ss_dssp CHHHHHHH--HTCHHHHHHHHHH
T ss_pred CHHHHHHH--hChHHHHHHHHHH
Confidence 35566666 777 777766544
No 120
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=35.97 E-value=1e+02 Score=20.89 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHH
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKK 88 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~ 88 (235)
..+.|..++..|.+++..+++++|.+.. |.+...+..|+.
T Consensus 16 ~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~---~ls~~~v~~l~r 55 (83)
T 2kz3_A 16 MIQLLRSHRIKTVVDLVSADLEEVAQKC---GLSYKALVALRR 55 (83)
T ss_dssp HHHHHHHTTCCCHHHHTTSCHHHHHHHH---TCCHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHhCCHHHHHHHh---CCCHHHHHHHHH
Confidence 4567777789999999999999998874 554333434433
No 121
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.70 E-value=30 Score=21.70 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=20.6
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcC
Q 026645 74 YPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLAL 111 (235)
Q Consensus 74 ~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l 111 (235)
+..||+... .. ..+...++|++..++++|+..
T Consensus 17 ~eMGF~D~~-~N-----~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 17 FEMGFCDRQ-LN-----LRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHTCCCHH-HH-----HHHHTTTTTCHHHHHHHHHHH
T ss_pred HHcCCCcHH-HH-----HHHHHHcCCCHHHHHHHHHhc
Confidence 334987662 22 233556788898888888753
No 122
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.57 E-value=35 Score=22.34 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=21.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHc-CCCCc
Q 026645 75 PVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLA-LPGIG 115 (235)
Q Consensus 75 ~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~-l~GIG 115 (235)
..||.++. ..++. +. .-+|++..+.++|.+ .++.|
T Consensus 28 ~MGF~d~~-an~~A----L~-at~Gnve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 28 AMGFVNYN-ANLQA----LI-ATDGDTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHTCCCHH-HHHHH----HH-HTTSCHHHHHHHHHHCCSSSC
T ss_pred HcCCCcHH-HHHHH----HH-HcCCCHHHHHHHHHhCCCccC
Confidence 34997662 22322 22 235899999999986 44444
No 123
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=34.56 E-value=8.3 Score=31.65 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=0.0
Q ss_pred HHHHHcCCCCcHHHHHHHHHH
Q 026645 105 LDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il~~ 125 (235)
...|..+||||+++|..++..
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~ 192 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY 192 (226)
T ss_dssp ---------------------
T ss_pred cccccccCCCCHHHHHHHHHH
Confidence 356778888888888877754
No 124
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=34.52 E-value=71 Score=21.54 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCCHHHHhcCCHHHHHH
Q 026645 45 GALQRLLQNGLHTAEAIDKADEATIKD 71 (235)
Q Consensus 45 ~~~~~l~~~~~pt~~~la~a~~e~l~~ 71 (235)
++++.|...+.-|..+|...+.++|..
T Consensus 26 Ra~NcLk~agI~Tv~dL~~~se~dLlk 52 (79)
T 3gfk_B 26 RSYNCLKRAGINTVQELANKTEEDMMK 52 (79)
T ss_dssp HHHHHHHHTTCCBHHHHTTCCHHHHTT
T ss_pred HHHHHHHHhCCCCHHHHHhCCHHHHHH
Confidence 445555555566666666666655543
No 125
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=33.85 E-value=34 Score=21.02 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=20.6
Q ss_pred HhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCC
Q 026645 71 DLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALP 112 (235)
Q Consensus 71 ~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~ 112 (235)
+.|...||..+ ...+. + ....+|++..+.++|.+.+
T Consensus 16 ~~L~~MGF~~~-~~~~~----A-L~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 16 EQLNSMGFINR-EANLQ----A-LIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHTTTCCCH-HHHHH----H-HHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHcCCCCH-HHHHH----H-HHHhCCCHHHHHHHHHHcC
Confidence 33456699433 22222 2 2234578999999988743
No 126
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=32.40 E-value=46 Score=23.16 Aligned_cols=54 Identities=7% Similarity=0.008 Sum_probs=37.5
Q ss_pred HHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChh
Q 026645 49 RLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPS 103 (235)
Q Consensus 49 ~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~ 103 (235)
.|.+.|..|+++|...+..+.-..|+..|.... -..|..+..++...+-..+|+
T Consensus 19 ~L~~~GI~t~~~Lr~~Ga~~ay~rLk~~~~~~~-~~~L~aL~gAi~G~~w~~l~~ 72 (93)
T 3mab_A 19 DLIKAGIKTPVELKDVGSKEAFLRIWENDSSVC-MSELYALEGAVQGIRWHGLDE 72 (93)
T ss_dssp HHHHTTCCSHHHHHHHCHHHHHHHHHHHCTTCC-HHHHHHHHHHHHTSCGGGSCH
T ss_pred HHHHcCCCCHHHHHhCCHHHHHHHHHHhCCCCC-HHHHHHHHHHHcCCcHHHCCH
Confidence 344458999999999999888777776665443 456777777765544345554
No 127
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=32.31 E-value=75 Score=26.90 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=6.5
Q ss_pred CCcHHHHHHHHHHh
Q 026645 113 GIGPKMANMVMTLG 126 (235)
Q Consensus 113 GIG~~tA~~il~~~ 126 (235)
|+++..+.-+..++
T Consensus 197 ~~~~~~~~~v~~~~ 210 (328)
T 3im1_A 197 TLTDSQLAQVAAFV 210 (328)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 45554444444443
No 128
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=31.95 E-value=52 Score=20.09 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=11.6
Q ss_pred cCCCChhhHHHHHcC
Q 026645 97 YDGDIPSSLDELLAL 111 (235)
Q Consensus 97 ~~g~~~~~~~~L~~l 111 (235)
.+|++..+.++|.+-
T Consensus 37 t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 37 TGGDINAAIERLLGS 51 (52)
T ss_dssp HTTCHHHHHHHHTTC
T ss_pred hCCCHHHHHHHHHhC
Confidence 457899999988763
No 129
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.86 E-value=71 Score=21.58 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.++++-+.+.|..++.++|.++
T Consensus 27 Y~~~F~~~~~~~~~~l~~lt~~dL~~l 53 (88)
T 2e8n_A 27 YTEHFMAAGYTAIEKVVQMTNDDVKRI 53 (88)
T ss_dssp GHHHHHHHTCSSHHHHTTSCTTHHHHT
T ss_pred HHHHHHHcCCChHHHHHhCCHHHHHHC
Confidence 455666667888999999999999887
No 130
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.82 E-value=1.1e+02 Score=21.20 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=22.2
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.++++-+.+.|..++.++|.++
T Consensus 37 Y~~~F~~~~~~~~~~L~~lt~~DL~~l 63 (99)
T 2eao_A 37 YRDSFLTAGFTSLQLVTQMTSEDLLRI 63 (99)
T ss_dssp GHHHHHHHTCCBHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCChHHHHhhCCHHHHHHC
Confidence 455566667888999999999999987
No 131
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=31.49 E-value=52 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.+++|-+.+.|..++.++|.++
T Consensus 30 Y~~~F~~~g~~~~~~l~~lt~~DL~~l 56 (91)
T 1x40_A 30 YLLHFHESGFTTVKDCAAINDSLLQKI 56 (91)
T ss_dssp GHHHHHHHTCCBSGGGGGCCHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHhhcCHHHHHHC
Confidence 455566667889999999999999987
No 132
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=31.02 E-value=1.2e+02 Score=20.42 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|...+|-+.+.+..++.++|.++
T Consensus 36 Y~~~F~~~g~d~le~l~~lt~~DL~~L 62 (86)
T 3kka_C 36 YTEHFMAAGYTAIEKVVQMTNDDIKRI 62 (86)
T ss_dssp GHHHHHHTTCCSHHHHHTCCHHHHHHT
T ss_pred HHHHHHHcCCChHHHHHhCCHHHHHHC
Confidence 445566667888999999999999887
No 133
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=30.79 E-value=10 Score=31.31 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHH
Q 026645 54 GLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIA 90 (235)
Q Consensus 54 ~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a 90 (235)
+|.|.++|+.++.++|.++ -|+...+++.|....
T Consensus 35 gf~sve~L~~a~~~eL~~v---~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 35 GFESVEDVRGADQSALADV---SGIGNALAARIKADV 68 (241)
T ss_dssp -------------------------------------
T ss_pred CCCCHHHHHhCCHHHHHhc---cCCCHHHHHHHHHHH
Confidence 4555555555555555443 133334444444433
No 134
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=30.77 E-value=27 Score=24.29 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhcCCcceeecchHHHHHHHHhcCc
Q 026645 105 LDELLALPGIGPKMANMVMTLGWFNVQGICVDTHVHRICNRLGWV 149 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il~~~~~~~~~~pvDt~v~Rv~~Rlg~~ 149 (235)
.+.+..+||||+..+.-+---++.+ ..-++..+...
T Consensus 17 eK~V~evpGIG~~~~~~L~~~Gf~k---------Ay~lLGqFL~l 52 (89)
T 1ci4_A 17 EKPVGSLAGIGEVLGKKLEERGFDK---------AYVVLGQFLVL 52 (89)
T ss_dssp TCCGGGSTTCCHHHHHHHHHTTCCS---------HHHHHHHHHHT
T ss_pred CCCcccCCCcCHHHHHHHHHcCccH---------HHHHHHHHHHc
Confidence 3457789999999998776655543 33467776554
No 135
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=30.17 E-value=11 Score=35.57 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHcC-CCCHHHHhcCCHHHHHHhhccC----CChHHHHHHHHHHHHHHHHhcCCCChhhHHHHH--cCCCCcHHHH
Q 026645 47 LQRLLQNG-LHTAEAIDKADEATIKDLIYPV----AFYTRKACNMKKIAKICLTKYDGDIPSSLDELL--ALPGIGPKMA 119 (235)
Q Consensus 47 ~~~l~~~~-~pt~~~la~a~~e~l~~~l~~~----G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~--~l~GIG~~tA 119 (235)
+..|++.+ .-++.+|..++.++|..+ .+. |+...+|..|.+..+.-.+ . ...+.|. .|||||+++|
T Consensus 470 i~~L~~~g~i~~~aDly~L~~~~L~~l-~~~~~~~g~g~ksa~nLl~aIe~sk~-----~-~l~r~L~aLGIp~VG~~~a 542 (615)
T 3sgi_A 470 GVALLQAKVIADEGELFALTERDLLRT-DLFRTKAGELSANGKRLLVNLDKAKA-----A-PLWRVLVALSIRHVGPTAA 542 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHCCCcCCHHHHhhCCHHHHhhc-cccccccCccchHHHHHHHHHHHhcC-----C-CHHHHHHHcCCCCCCHHHH
Confidence 33344333 346677777766666554 222 3334445554443332111 1 1233443 5899999999
Q ss_pred HHHHH
Q 026645 120 NMVMT 124 (235)
Q Consensus 120 ~~il~ 124 (235)
..++.
T Consensus 543 k~La~ 547 (615)
T 3sgi_A 543 RALAT 547 (615)
T ss_dssp -----
T ss_pred HHHHH
Confidence 87764
No 136
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=29.50 E-value=1.4e+02 Score=20.41 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.+.+|-+.+.|..++.++|.++
T Consensus 40 Y~~~F~~~g~d~~e~l~~lt~~DL~~l 66 (90)
T 3h8m_A 40 YKDNFTAAGYNSLESVARMTIEDVMSL 66 (90)
T ss_dssp GHHHHHHTTCCSHHHHHTCCHHHHHHT
T ss_pred HHHHHHHcCCChHHHHhhCCHHHHHHC
Confidence 445566667888999999999999887
No 137
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=29.39 E-value=60 Score=23.32 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=24.2
Q ss_pred HhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCC
Q 026645 71 DLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPG 113 (235)
Q Consensus 71 ~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~G 113 (235)
+-|+..||.++ ...+..+ ...+|++..+.+.|.+.++
T Consensus 71 ~qL~eMGF~d~-~~ni~AL-----~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 71 QQLRDMGIQDD-ELSLRAL-----QATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHTTTCCCH-HHHHHHH-----HHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHcCCCCH-HHHHHHH-----HHhCCCHHHHHHHHHhcCC
Confidence 55677899764 2233222 2346999999999998653
No 138
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=28.93 E-value=53 Score=27.84 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=29.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHH
Q 026645 75 PVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVM 123 (235)
Q Consensus 75 ~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il 123 (235)
..|+.. +..+.++++.|.. |--+.. ..|.+|||||+..+..+-
T Consensus 132 ~~g~~~--~~~~l~L~q~i~q---~~w~~~-~pL~Qlp~i~~~~~~~l~ 174 (328)
T 3im1_A 132 ANGYLN--ATTAMDLAQMLIQ---GVWDVD-NPLRQIPHFNNKILEKCK 174 (328)
T ss_dssp HTTBTT--HHHHHHHHHHHHH---TSCTTS-CGGGGSTTCCHHHHHHHH
T ss_pred cCCcHH--HHHHHHHHHHHHh---hcCCCC-CceeCCCCCCHHHHHHHH
Confidence 346554 7788888888776 322222 358999999999887654
No 139
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=28.63 E-value=77 Score=18.18 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=20.6
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHc
Q 026645 69 IKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLA 110 (235)
Q Consensus 69 l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~ 110 (235)
..+.|...||.+..+.. ++. ..+++++.+.++|.+
T Consensus 7 ~i~~L~~MGF~~~~a~~------AL~-~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 7 AVEELSGMGFTEEEAHN------ALE-KCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHTTTSCHHHHHH------HHH-HHTSCHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHH------HHH-HhCcCHHHHHHHHHc
Confidence 33445567998653322 211 235788888888864
No 140
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=28.58 E-value=27 Score=30.00 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=12.7
Q ss_pred cCCCCcHHHHHHHHH
Q 026645 110 ALPGIGPKMANMVMT 124 (235)
Q Consensus 110 ~l~GIG~~tA~~il~ 124 (235)
.+||||+|||.-++.
T Consensus 239 Gv~GiG~KtA~kLl~ 253 (336)
T 1rxw_A 239 GVKGVGVKKALNYIK 253 (336)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH
Confidence 589999999977765
No 141
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.46 E-value=37 Score=21.04 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=21.2
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCC
Q 026645 72 LIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALP 112 (235)
Q Consensus 72 ~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~ 112 (235)
.|...||.+.. ..+.. +...+|++..+.++|.+.+
T Consensus 15 ~L~~MGF~d~~-~n~~A-----L~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 15 QLRSMGFLNRE-ANLQA-----LIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHTCCCHH-HHHHH-----HHHHTSCHHHHHHHHHHHS
T ss_pred HHHHcCCCcHH-HHHHH-----HHHcCCCHHHHHHHHHhCC
Confidence 34455997652 12222 2234699999999988754
No 142
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=27.19 E-value=88 Score=21.98 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=9.7
Q ss_pred HHHHHcCCCCcHHHHHHHH
Q 026645 105 LDELLALPGIGPKMANMVM 123 (235)
Q Consensus 105 ~~~L~~l~GIG~~tA~~il 123 (235)
.+.|++++|+|+++.+-|.
T Consensus 55 e~dLlki~n~G~KSl~EI~ 73 (98)
T 1coo_A 55 EVELLKTPNLGKKSLTEIK 73 (98)
T ss_dssp HHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHH
Confidence 4455555555555554444
No 143
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=27.08 E-value=28 Score=30.42 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.8
Q ss_pred cCCCCcHHHHHHHHH
Q 026645 110 ALPGIGPKMANMVMT 124 (235)
Q Consensus 110 ~l~GIG~~tA~~il~ 124 (235)
.+||||++||--++.
T Consensus 255 GVpGIG~KtA~kLl~ 269 (363)
T 3ory_A 255 GFEGIGPKKALQLVK 269 (363)
T ss_dssp CSTTCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH
Confidence 678999999987774
No 144
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=27.07 E-value=29 Score=29.96 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=12.7
Q ss_pred cCCCCcHHHHHHHHH
Q 026645 110 ALPGIGPKMANMVMT 124 (235)
Q Consensus 110 ~l~GIG~~tA~~il~ 124 (235)
.+||||++||--++.
T Consensus 238 Gv~GIG~KtA~kLi~ 252 (346)
T 2izo_A 238 GIRGIGPERALKIIK 252 (346)
T ss_dssp CSTTCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH
Confidence 688999999977765
No 145
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=26.20 E-value=31 Score=29.44 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=13.4
Q ss_pred cCCCCcHHHHHHHHHH
Q 026645 110 ALPGIGPKMANMVMTL 125 (235)
Q Consensus 110 ~l~GIG~~tA~~il~~ 125 (235)
.+||||++||--++.-
T Consensus 229 GvpGiG~ktA~kli~~ 244 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS 244 (326)
T ss_dssp TTTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc
Confidence 6899999999777765
No 146
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.15 E-value=2e+02 Score=22.94 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=49.9
Q ss_pred CCCCChHHHHHHHHHhccccHHHHHHHHHHHHHc--CCCCHHHHhc-------CCHHHHHHhhccCCChHHHHHHHHHHH
Q 026645 20 PPKERRFAVLLSALLSSLTKDKVADGALQRLLQN--GLHTAEAIDK-------ADEATIKDLIYPVAFYTRKACNMKKIA 90 (235)
Q Consensus 20 p~~~~~f~~lv~~iLsqqt~~~~~~~~~~~l~~~--~~pt~~~la~-------a~~e~l~~~l~~~G~~~~Ka~~l~~~a 90 (235)
|....-|+.+.+-+|.|--..+-+...+..-+.. -|++.|.+.- -+-+++... |-.+-+-.++....
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~----~~~~i~~~y~~d~~ 185 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQT----GRRGIEEEYVSDSI 185 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC---------------CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhh----hhccchhhhhhhHH
Confidence 3344569999999999988888888877766653 2334443321 122222211 22222334444333
Q ss_pred HHHHHhcCCCChhhHHHHH-cCCCCcHHHHHHHH
Q 026645 91 KICLTKYDGDIPSSLDELL-ALPGIGPKMANMVM 123 (235)
Q Consensus 91 ~~i~~~~~g~~~~~~~~L~-~l~GIG~~tA~~il 123 (235)
.. .+ .--|+..+.-. -+||||.|.++-..
T Consensus 186 ~l-He---~~s~~~ikkY~n~iPGiGSY~va~aa 215 (242)
T 3kae_A 186 EF-HE---SLSPSLVKKYMEHVPGIGSYFISNAA 215 (242)
T ss_dssp HH-HH---HCCHHHHHHHHTSTTTHHHHHHHHHH
T ss_pred HH-HH---hccHHHHHHHHHhCCCchhHHHHHHH
Confidence 22 22 22344455544 48999998765444
No 147
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=25.97 E-value=74 Score=27.08 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=30.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHH
Q 026645 75 PVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVM 123 (235)
Q Consensus 75 ~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il 123 (235)
..|+... +..+.++++.|... --++ ...|.+|||||+..+..+-
T Consensus 135 ~~g~~~~-~~~~l~L~q~i~q~---~w~~-~~pL~Qlp~i~~~~~~~l~ 178 (339)
T 2q0z_X 135 SNGWLSP-ALAAMELAQMVTQA---MWSK-DSYLKQLPHFTSEHIKRCT 178 (339)
T ss_dssp HTTBHHH-HHHHHHHHHHHHHT---CCTT-SCGGGGSTTCCHHHHHHHH
T ss_pred HcCCHHH-HHHHHHHHHHHHHh---cCCC-CCceecCCCCCHHHHHHHH
Confidence 3566544 67788888887763 2222 2358999999999887654
No 148
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=25.82 E-value=82 Score=21.80 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=38.5
Q ss_pred HHHHHcCCCCHHHHhcCCHHHHHHhhccCCChHHHHHHHHHHHHHHHHhcCCCChh
Q 026645 48 QRLLQNGLHTAEAIDKADEATIKDLIYPVAFYTRKACNMKKIAKICLTKYDGDIPS 103 (235)
Q Consensus 48 ~~l~~~~~pt~~~la~a~~e~l~~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~ 103 (235)
+.|.+.|..|+++|...++.+.-..|+..|.... ...+..+..++...+-..+++
T Consensus 18 ~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c-~~~L~aL~gAi~G~~w~~l~~ 72 (93)
T 3bqs_A 18 QDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVC-MSELYALEGAVQGIRWHGLDE 72 (93)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCC-HHHHHHHHHHHHTSCGGGSCH
T ss_pred HHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHcCCCHHHCCH
Confidence 3444558999999999999988888887776554 367777777765433334554
No 149
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=25.62 E-value=87 Score=26.63 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=9.2
Q ss_pred CCCHHHHhcCCHHHHHHhh
Q 026645 55 LHTAEAIDKADEATIKDLI 73 (235)
Q Consensus 55 ~pt~~~la~a~~e~l~~~l 73 (235)
..|+++|.+++++++.+++
T Consensus 182 i~s~~~l~~~~~~e~~~ll 200 (339)
T 2q0z_X 182 VESVFDIMEMEDEERNALL 200 (339)
T ss_dssp CCSHHHHHHSCHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHHHH
Confidence 3345555555555554443
No 150
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=25.45 E-value=31 Score=30.01 Aligned_cols=16 Identities=44% Similarity=0.553 Sum_probs=13.0
Q ss_pred cCCCCcHHHHHHHHHH
Q 026645 110 ALPGIGPKMANMVMTL 125 (235)
Q Consensus 110 ~l~GIG~~tA~~il~~ 125 (235)
.+||||+|||--++.-
T Consensus 229 gv~GiG~ktA~kli~~ 244 (352)
T 3qe9_Y 229 SLRGIGLAKACKVLRL 244 (352)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCeeHHHHHHHHHH
Confidence 6899999999776643
No 151
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=25.00 E-value=1.5e+02 Score=20.67 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.+.++-+.+.|..++.++|.++
T Consensus 41 Y~~~F~~~gid~~~~L~~Lt~eDLkeL 67 (100)
T 2kg5_A 41 YADTFRRHGLATAGAARGLGHEELKQL 67 (100)
T ss_dssp GHHHHHHTTCCBHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHhcCHHHHHHC
Confidence 455666666766999999999999988
No 152
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.98 E-value=73 Score=21.17 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=13.4
Q ss_pred hcCCCChhhHHHHHcCC
Q 026645 96 KYDGDIPSSLDELLALP 112 (235)
Q Consensus 96 ~~~g~~~~~~~~L~~l~ 112 (235)
..+|++..+.++|...+
T Consensus 53 ~t~Gnve~Ave~L~~~~ 69 (74)
T 1vej_A 53 ATDGDIHAAIEMLLGAS 69 (74)
T ss_dssp HTTSCHHHHHHHHHTCC
T ss_pred HhCCCHHHHHHHHHhCC
Confidence 35689999999998744
No 153
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=24.79 E-value=44 Score=34.06 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=30.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 76 VAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 76 ~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.|+..+||..|.+.-+ + .+|.+ ..++.|...+|||+++-.-...|
T Consensus 720 ~GlGp~kA~~Iv~~r~---~-~~G~f-~sr~~L~~v~~iG~k~fe~~agf 764 (1219)
T 3psi_A 720 SGFGKRKAIDFLQSLQ---R-LNEPL-LARQQLITHNILHKTIFMNSAGF 764 (1219)
T ss_dssp TTCCHHHHHHHHHHHH---H-HCSCC-CCTTHHHHTTCSCHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHH---H-hCCCC-CCHHHHhhCCCccHHHHHhcccc
Confidence 4566778887765432 1 13544 56889999999999997665554
No 154
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=24.73 E-value=34 Score=29.38 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.7
Q ss_pred cCCCCcHHHHHHHHH
Q 026645 110 ALPGIGPKMANMVMT 124 (235)
Q Consensus 110 ~l~GIG~~tA~~il~ 124 (235)
.+||||++||--++.
T Consensus 241 gv~GiG~ktA~kli~ 255 (340)
T 1b43_A 241 GIKGIGLKKALEIVR 255 (340)
T ss_dssp CSTTCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH
Confidence 689999999977765
No 155
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=24.42 E-value=79 Score=21.21 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.+.+|-+.+.|..++.++|.++
T Consensus 38 Y~~~F~~~g~~s~e~l~~lt~~DL~~l 64 (82)
T 3hil_A 38 YILHFHSAGLDTMECVLELTAEDLTQM 64 (82)
T ss_dssp GHHHHHHTTCCSGGGGTTCCHHHHHHT
T ss_pred HHHHHHHcCCChHHHHhcCCHHHHHHC
Confidence 445566667888999999999999887
No 156
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=24.15 E-value=35 Score=29.82 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHH
Q 026645 111 LPGIGPKMANMVMT 124 (235)
Q Consensus 111 l~GIG~~tA~~il~ 124 (235)
+||||++||--++.
T Consensus 237 IpGIG~KtA~kLl~ 250 (379)
T 1ul1_X 237 IRGIGPKRAVDLIQ 250 (379)
T ss_dssp CTTCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHH
Confidence 89999999977764
No 157
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=24.13 E-value=35 Score=34.19 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 76 VAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 76 ~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
.|+..+||..|.+.-+ + .+|.+ ..++.|...+|||+++-.-...|
T Consensus 723 ~GlGp~kA~~Iv~~r~---~-~~G~f-~sr~~L~~v~~iG~k~fe~~agf 767 (1030)
T 3psf_A 723 SGFGKRKAIDFLQSLQ---R-LNEPL-LARQQLITHNILHKTIFMNSAGF 767 (1030)
T ss_dssp TTCCHHHHHHHHHHHH---H-TCSCC-CCTTHHHHTTSSCHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHH---H-hCCCC-CCHHHHHhcCCccHHHHHhccCe
Confidence 4566678877765332 1 23544 56889999999999997665544
No 158
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=23.75 E-value=80 Score=30.58 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.8
Q ss_pred hHHHHHcCCCCcHHHHHHHHHH
Q 026645 104 SLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 104 ~~~~L~~l~GIG~~tA~~il~~ 125 (235)
+.+.|..+||||+..|..|+.+
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~y 527 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAH 527 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHH
T ss_pred CHHHHhhcCCCCHHHHHHHHHH
Confidence 5788999999999999999876
No 159
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=22.90 E-value=1.4e+02 Score=27.76 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=21.4
Q ss_pred ChhhHHHHHcCCCCcHHHHHHHHHHhcC
Q 026645 101 IPSSLDELLALPGIGPKMANMVMTLGWF 128 (235)
Q Consensus 101 ~~~~~~~L~~l~GIG~~tA~~il~~~~~ 128 (235)
++...-.|.+|||||+..|..+-..++.
T Consensus 652 v~~e~~~L~qlp~i~~~rar~L~~~g~~ 679 (715)
T 2va8_A 652 IKEELLELVQISGVGRKRARLLYNNGIK 679 (715)
T ss_dssp CCGGGHHHHTSTTCCHHHHHHHHHTTCC
T ss_pred CChhhcchhhCCCCCHHHHHHHHHcCCC
Confidence 3445567889999999999987666553
No 160
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.45 E-value=60 Score=22.61 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=22.7
Q ss_pred HHHHHHHcCCCCHHHHhcCCHHHHHHh
Q 026645 46 ALQRLLQNGLHTAEAIDKADEATIKDL 72 (235)
Q Consensus 46 ~~~~l~~~~~pt~~~la~a~~e~l~~~ 72 (235)
+...|.+++|-+.+.+..++.++|.++
T Consensus 38 Y~~~F~~~g~d~le~l~~lt~~DL~~l 64 (97)
T 2dl0_A 38 YAGTLSTAGFSTLSQVPSLSHTCLQEA 64 (97)
T ss_dssp GHHHHHHHTCCSTTSGGGCCHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHhcCHHHHHHC
Confidence 455666668888999999999999988
No 161
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.41 E-value=1.4e+02 Score=17.76 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=20.4
Q ss_pred HhhccCCChHHHHHHHHHHHHHHHHhcCCCChhhHHHHHc
Q 026645 71 DLIYPVAFYTRKACNMKKIAKICLTKYDGDIPSSLDELLA 110 (235)
Q Consensus 71 ~~l~~~G~~~~Ka~~l~~~a~~i~~~~~g~~~~~~~~L~~ 110 (235)
+.|-..||.+..+.. + ....+++++.+.++|.+
T Consensus 13 ~~L~~MGF~~~~a~~------A-L~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 13 TEIMSMGYERERVVA------A-LRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHTTCCHHHHHH------H-HHTTTSCSHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHH------H-HHHhCCCHHHHHHHHHh
Confidence 334556997553321 2 23356789999999876
No 162
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.00 E-value=20 Score=29.27 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred ChhhHHHHHcCCCCcHHHHHHHHHH
Q 026645 101 IPSSLDELLALPGIGPKMANMVMTL 125 (235)
Q Consensus 101 ~~~~~~~L~~l~GIG~~tA~~il~~ 125 (235)
...+.++|.++ |||+++|..|..+
T Consensus 200 ~~As~eeL~~V-GIG~~~A~~I~~~ 223 (226)
T 3c65_A 200 KEATVEELQRA-NIPRAVAEKIYEK 223 (226)
T ss_dssp -------------------------
T ss_pred HhCCHHHHHHc-CCCHHHHHHHHHH
Confidence 34567889999 9999999988654
Done!