Query 026646
Match_columns 235
No_of_seqs 199 out of 853
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1318 Helix loop helix trans 99.5 1.1E-13 2.3E-18 131.9 8.7 84 75-158 233-321 (411)
2 PF00010 HLH: Helix-loop-helix 99.5 6.3E-14 1.4E-18 97.7 4.9 51 76-126 2-55 (55)
3 cd00083 HLH Helix-loop-helix d 99.5 1.2E-13 2.5E-18 96.4 5.6 55 75-129 4-59 (60)
4 smart00353 HLH helix loop heli 99.4 3.7E-13 8E-18 92.4 6.5 51 80-130 1-52 (53)
5 KOG1319 bHLHZip transcription 99.2 6.4E-11 1.4E-15 103.5 7.2 80 75-154 62-146 (229)
6 KOG2483 Upstream transcription 98.9 7.2E-09 1.6E-13 92.8 10.6 82 73-154 57-139 (232)
7 KOG4304 Transcriptional repres 98.7 1.5E-08 3.2E-13 91.6 3.6 58 73-130 30-93 (250)
8 KOG2588 Predicted DNA-binding 98.6 6.1E-08 1.3E-12 100.0 4.9 78 61-140 263-340 (953)
9 KOG3561 Aryl-hydrocarbon recep 98.4 2.6E-07 5.7E-12 94.7 5.9 53 76-128 21-75 (803)
10 KOG0561 bHLH transcription fac 98.3 5.8E-07 1.3E-11 83.6 4.5 69 78-146 63-131 (373)
11 KOG3960 Myogenic helix-loop-he 97.8 6E-05 1.3E-09 68.8 7.0 61 74-134 117-177 (284)
12 PLN03217 transcription factor 97.6 0.00015 3.3E-09 56.6 6.0 56 87-142 19-78 (93)
13 KOG4029 Transcription factor H 97.5 0.0001 2.3E-09 65.0 4.6 60 75-134 109-170 (228)
14 PRK15422 septal ring assembly 97.4 0.0017 3.7E-08 49.9 8.9 60 115-174 13-72 (79)
15 COG3074 Uncharacterized protei 97.2 0.0033 7.1E-08 47.7 8.9 60 115-174 13-72 (79)
16 PF06005 DUF904: Protein of un 97.2 0.0037 8E-08 47.0 9.0 53 119-171 3-55 (72)
17 KOG3910 Helix loop helix trans 97.1 0.00059 1.3E-08 67.4 4.6 68 75-147 526-595 (632)
18 PF06005 DUF904: Protein of un 96.8 0.017 3.7E-07 43.4 9.7 57 115-171 13-69 (72)
19 TIGR02894 DNA_bind_RsfA transc 96.6 0.014 3.1E-07 50.2 8.9 60 115-174 82-144 (161)
20 KOG2264 Exostosin EXT1L [Signa 96.4 0.021 4.5E-07 57.9 10.0 95 114-208 87-187 (907)
21 KOG4005 Transcription factor X 96.0 0.12 2.6E-06 47.5 11.4 85 79-171 63-148 (292)
22 PRK15422 septal ring assembly 95.7 0.092 2E-06 40.5 8.4 56 119-174 3-65 (79)
23 smart00338 BRLZ basic region l 95.6 0.044 9.5E-07 39.4 6.0 40 118-157 24-63 (65)
24 PF00170 bZIP_1: bZIP transcri 95.5 0.057 1.2E-06 38.7 6.3 35 120-154 26-60 (64)
25 PF06156 DUF972: Protein of un 95.4 0.11 2.3E-06 41.8 8.0 51 125-175 6-56 (107)
26 PRK13729 conjugal transfer pil 95.2 0.27 5.8E-06 48.7 11.7 56 121-176 70-125 (475)
27 KOG4447 Transcription factor T 95.0 0.016 3.5E-07 49.9 2.3 53 75-127 78-130 (173)
28 PF12325 TMF_TATA_bd: TATA ele 94.8 0.24 5.3E-06 40.6 8.6 50 118-167 14-63 (120)
29 PRK13169 DNA replication intia 94.7 0.2 4.4E-06 40.6 8.0 50 125-174 6-55 (110)
30 PF07106 TBPIP: Tat binding pr 94.7 0.22 4.7E-06 41.9 8.4 66 110-176 70-137 (169)
31 PRK10884 SH3 domain-containing 94.6 0.23 4.9E-06 44.0 8.7 78 84-171 92-169 (206)
32 PF08317 Spc7: Spc7 kinetochor 94.1 0.83 1.8E-05 42.5 11.7 14 87-100 186-199 (325)
33 KOG3582 Mlx interactors and re 94.1 0.037 7.9E-07 57.0 2.9 81 74-154 650-733 (856)
34 PF12329 TMF_DNA_bd: TATA elem 94.0 0.51 1.1E-05 35.4 8.3 60 115-174 7-66 (74)
35 COG3883 Uncharacterized protei 94.0 0.27 5.8E-06 45.5 8.1 59 113-171 38-96 (265)
36 smart00787 Spc7 Spc7 kinetocho 94.0 0.77 1.7E-05 43.0 11.2 15 87-101 181-195 (312)
37 COG4026 Uncharacterized protei 93.8 0.5 1.1E-05 43.3 9.2 52 123-174 138-189 (290)
38 TIGR03752 conj_TIGR03752 integ 93.7 0.49 1.1E-05 46.9 9.7 60 115-174 61-142 (472)
39 PRK11637 AmiB activator; Provi 93.6 0.89 1.9E-05 43.5 11.2 60 114-173 69-128 (428)
40 PRK13169 DNA replication intia 93.6 0.58 1.3E-05 37.9 8.4 51 119-169 7-57 (110)
41 PF06156 DUF972: Protein of un 93.6 0.56 1.2E-05 37.7 8.3 51 119-169 7-57 (107)
42 PF13870 DUF4201: Domain of un 93.5 0.63 1.4E-05 39.4 9.0 72 115-186 72-143 (177)
43 TIGR02449 conserved hypothetic 93.5 0.75 1.6E-05 34.2 8.2 54 122-175 9-62 (65)
44 COG3074 Uncharacterized protei 93.4 0.66 1.4E-05 35.4 7.9 51 119-169 3-53 (79)
45 KOG3560 Aryl-hydrocarbon recep 93.4 0.078 1.7E-06 53.5 3.7 61 63-123 9-75 (712)
46 COG3883 Uncharacterized protei 93.3 0.68 1.5E-05 42.8 9.5 61 115-175 33-93 (265)
47 PF08172 CASP_C: CASP C termin 93.1 0.39 8.5E-06 43.7 7.5 52 125-176 84-135 (248)
48 PF00170 bZIP_1: bZIP transcri 92.8 1 2.3E-05 32.1 8.0 36 136-171 28-63 (64)
49 TIGR02894 DNA_bind_RsfA transc 92.7 0.75 1.6E-05 39.7 8.3 57 117-173 94-150 (161)
50 PF02183 HALZ: Homeobox associ 92.7 0.5 1.1E-05 32.5 5.9 40 132-171 3-42 (45)
51 KOG3650 Predicted coiled-coil 92.6 0.54 1.2E-05 38.1 6.8 44 124-167 60-103 (120)
52 PF13815 Dzip-like_N: Iguana/D 92.6 0.94 2E-05 36.3 8.3 56 113-171 62-117 (118)
53 PF08614 ATG16: Autophagy prot 92.6 1.1 2.3E-05 38.7 9.2 82 85-173 88-169 (194)
54 PRK13729 conjugal transfer pil 92.4 0.79 1.7E-05 45.5 9.1 59 115-173 71-129 (475)
55 PRK10884 SH3 domain-containing 92.4 1.2 2.7E-05 39.4 9.5 29 132-160 137-165 (206)
56 PF14197 Cep57_CLD_2: Centroso 92.3 1.3 2.8E-05 33.0 8.0 52 122-173 7-65 (69)
57 PRK02119 hypothetical protein; 92.1 2.3 5E-05 31.9 9.3 54 122-175 4-57 (73)
58 KOG4196 bZIP transcription fac 92.0 2.1 4.5E-05 36.0 9.7 53 120-173 68-120 (135)
59 PF04111 APG6: Autophagy prote 91.9 0.74 1.6E-05 43.0 8.0 19 155-173 113-131 (314)
60 PRK04406 hypothetical protein; 91.8 2.6 5.6E-05 31.8 9.4 52 124-175 8-59 (75)
61 TIGR02449 conserved hypothetic 91.8 3 6.5E-05 31.0 9.5 53 122-174 2-54 (65)
62 PF14197 Cep57_CLD_2: Centroso 91.5 1.7 3.7E-05 32.4 8.0 54 116-169 15-68 (69)
63 PF08317 Spc7: Spc7 kinetochor 91.5 1.1 2.4E-05 41.6 8.6 7 96-102 174-180 (325)
64 PRK11637 AmiB activator; Provi 91.5 1.4 3.1E-05 42.1 9.5 31 142-172 90-120 (428)
65 KOG0996 Structural maintenance 91.4 2.2 4.7E-05 46.6 11.6 85 89-175 803-898 (1293)
66 COG4026 Uncharacterized protei 91.4 0.88 1.9E-05 41.8 7.5 47 122-168 144-190 (290)
67 PF04880 NUDE_C: NUDE protein, 91.2 0.37 7.9E-06 41.7 4.7 20 151-170 27-46 (166)
68 PF13851 GAS: Growth-arrest sp 91.0 2 4.4E-05 37.7 9.3 60 113-172 20-79 (201)
69 PF07798 DUF1640: Protein of u 90.9 2.5 5.4E-05 36.0 9.6 17 154-170 79-95 (177)
70 PF11932 DUF3450: Protein of u 90.7 1.4 3.1E-05 39.2 8.3 22 152-173 74-95 (251)
71 PHA02562 46 endonuclease subun 90.6 2.5 5.4E-05 41.0 10.4 77 86-169 331-407 (562)
72 PF10224 DUF2205: Predicted co 90.5 3.8 8.2E-05 31.6 9.3 43 131-173 20-62 (80)
73 PRK00846 hypothetical protein; 90.5 3.7 8.1E-05 31.4 9.1 52 124-175 10-61 (77)
74 smart00338 BRLZ basic region l 90.4 2.9 6.4E-05 29.8 8.1 35 137-171 29-63 (65)
75 KOG3119 Basic region leucine z 90.3 5.1 0.00011 36.7 11.6 32 123-154 218-249 (269)
76 PF07716 bZIP_2: Basic region 90.3 0.8 1.7E-05 31.9 5.0 30 140-169 24-53 (54)
77 PF02183 HALZ: Homeobox associ 90.3 1.1 2.3E-05 30.9 5.5 33 141-173 5-37 (45)
78 TIGR02209 ftsL_broad cell divi 90.2 2.6 5.5E-05 31.2 8.0 47 125-172 22-68 (85)
79 COG4467 Regulator of replicati 90.2 1.8 3.8E-05 35.5 7.5 50 124-173 5-54 (114)
80 PF09789 DUF2353: Uncharacteri 90.1 4.3 9.4E-05 38.5 11.2 64 86-150 38-109 (319)
81 PF08172 CASP_C: CASP C termin 90.1 2 4.2E-05 39.2 8.7 61 109-169 75-135 (248)
82 PF12808 Mto2_bdg: Micro-tubul 90.1 1 2.2E-05 32.1 5.4 47 122-168 3-49 (52)
83 PF10211 Ax_dynein_light: Axon 90.0 1.6 3.6E-05 37.9 7.8 17 156-172 171-187 (189)
84 KOG2391 Vacuolar sorting prote 90.0 1.6 3.4E-05 41.9 8.2 29 145-173 236-264 (365)
85 PRK04325 hypothetical protein; 90.0 4.5 9.6E-05 30.4 9.1 53 123-175 5-57 (74)
86 KOG3559 Transcriptional regula 89.9 0.27 5.9E-06 48.4 3.1 46 81-127 7-54 (598)
87 PF10146 zf-C4H2: Zinc finger- 89.8 2.8 6.1E-05 37.8 9.3 20 120-139 32-51 (230)
88 PF04102 SlyX: SlyX; InterPro 89.8 2.2 4.9E-05 31.3 7.3 51 125-175 2-52 (69)
89 PF10234 Cluap1: Clusterin-ass 89.7 1.4 3.1E-05 40.7 7.5 58 125-182 167-225 (267)
90 TIGR02231 conserved hypothetic 89.6 2.4 5.2E-05 41.6 9.5 84 88-175 74-172 (525)
91 PF07106 TBPIP: Tat binding pr 89.6 1.2 2.6E-05 37.4 6.5 53 122-174 74-128 (169)
92 PF04420 CHD5: CHD5-like prote 89.5 1.8 4E-05 36.6 7.6 21 117-137 37-57 (161)
93 KOG3558 Hypoxia-inducible fact 89.3 0.3 6.5E-06 50.4 3.1 46 81-127 52-99 (768)
94 PF04977 DivIC: Septum formati 89.3 1.8 4E-05 31.1 6.4 43 130-172 20-62 (80)
95 PRK00295 hypothetical protein; 89.2 5 0.00011 29.6 8.8 51 125-175 3-53 (68)
96 KOG1962 B-cell receptor-associ 89.2 5 0.00011 36.2 10.3 93 77-173 115-211 (216)
97 PTZ00454 26S protease regulato 89.2 1.6 3.4E-05 42.0 7.7 39 141-179 29-67 (398)
98 PF02403 Seryl_tRNA_N: Seryl-t 89.1 3.2 6.8E-05 32.2 8.1 51 123-173 39-92 (108)
99 KOG3898 Transcription factor N 89.0 0.27 5.8E-06 44.8 2.2 53 75-127 72-125 (254)
100 PF12325 TMF_TATA_bd: TATA ele 88.9 5.3 0.00011 32.8 9.6 48 110-157 13-60 (120)
101 PF04728 LPP: Lipoprotein leuc 88.9 4.4 9.5E-05 29.4 8.0 40 122-161 5-44 (56)
102 KOG3119 Basic region leucine z 88.8 2 4.3E-05 39.3 7.8 55 120-174 194-248 (269)
103 PF10473 CENP-F_leu_zip: Leuci 88.8 4.3 9.3E-05 34.2 9.1 39 135-173 53-91 (140)
104 PRK02793 phi X174 lysis protei 88.8 6.5 0.00014 29.3 9.2 51 125-175 6-56 (72)
105 PF10805 DUF2730: Protein of u 88.7 2.1 4.6E-05 33.9 7.0 52 122-173 44-97 (106)
106 KOG4395 Transcription factor A 88.6 0.77 1.7E-05 42.5 4.9 52 76-127 175-227 (285)
107 PF10805 DUF2730: Protein of u 88.5 3.9 8.4E-05 32.5 8.3 54 122-175 37-92 (106)
108 TIGR00219 mreC rod shape-deter 88.5 2.9 6.3E-05 38.4 8.7 41 130-173 69-109 (283)
109 PF07989 Microtub_assoc: Micro 88.5 3.7 8E-05 31.0 7.7 27 122-148 2-28 (75)
110 PF10224 DUF2205: Predicted co 88.4 3.3 7.1E-05 31.9 7.5 49 122-170 18-66 (80)
111 PF15035 Rootletin: Ciliary ro 88.3 4.2 9.2E-05 35.4 9.1 62 112-173 59-120 (182)
112 PF05529 Bap31: B-cell recepto 88.3 3.5 7.5E-05 35.2 8.5 29 140-168 160-188 (192)
113 PRK13922 rod shape-determining 88.2 2.6 5.6E-05 37.8 8.1 39 131-173 73-111 (276)
114 PF14662 CCDC155: Coiled-coil 88.2 3.4 7.5E-05 36.7 8.5 47 130-176 84-130 (193)
115 PF04977 DivIC: Septum formati 88.1 2.7 5.9E-05 30.2 6.7 32 122-153 19-50 (80)
116 PF06785 UPF0242: Uncharacteri 88.0 2.3 5.1E-05 40.9 7.8 75 113-187 120-196 (401)
117 PF06632 XRCC4: DNA double-str 87.9 4.2 9.1E-05 38.8 9.6 43 114-156 131-173 (342)
118 COG4942 Membrane-bound metallo 87.9 5 0.00011 39.4 10.2 15 156-170 95-109 (420)
119 PF05667 DUF812: Protein of un 87.8 4.3 9.3E-05 41.4 10.1 60 115-174 323-382 (594)
120 PRK09039 hypothetical protein; 87.8 3.9 8.5E-05 38.6 9.3 55 113-167 130-184 (343)
121 PF04111 APG6: Autophagy prote 87.5 4.7 0.0001 37.7 9.5 6 192-197 173-178 (314)
122 PF11559 ADIP: Afadin- and alp 87.5 10 0.00022 31.1 10.5 10 89-98 6-15 (151)
123 PF10186 Atg14: UV radiation r 87.2 4.6 0.0001 35.6 8.9 12 162-173 126-137 (302)
124 PRK00736 hypothetical protein; 87.1 8.6 0.00019 28.4 8.8 49 127-175 5-53 (68)
125 KOG4196 bZIP transcription fac 86.9 6.2 0.00013 33.2 8.8 30 144-173 77-106 (135)
126 PHA03011 hypothetical protein; 86.9 7.2 0.00016 31.8 8.9 60 115-174 59-118 (120)
127 PF10498 IFT57: Intra-flagella 86.9 4 8.6E-05 39.1 8.8 21 84-104 219-239 (359)
128 PF05266 DUF724: Protein of un 86.5 5.8 0.00013 34.8 8.9 37 119-155 109-145 (190)
129 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.5 8.1 0.00018 31.4 9.3 29 117-145 56-84 (132)
130 PF08826 DMPK_coil: DMPK coile 86.5 11 0.00023 27.7 9.2 54 115-168 6-59 (61)
131 COG2433 Uncharacterized conser 86.4 2.8 6.1E-05 43.0 7.8 40 118-157 420-459 (652)
132 PF12718 Tropomyosin_1: Tropom 86.4 6.7 0.00015 32.7 9.0 45 118-162 12-56 (143)
133 PF04728 LPP: Lipoprotein leuc 86.2 6.2 0.00013 28.6 7.4 47 127-173 3-49 (56)
134 PRK00888 ftsB cell division pr 86.1 2.9 6.3E-05 33.2 6.4 43 124-173 31-73 (105)
135 PRK00888 ftsB cell division pr 86.1 2.7 6E-05 33.4 6.2 33 137-169 30-62 (105)
136 KOG0946 ER-Golgi vesicle-tethe 86.1 4.1 9E-05 43.2 9.0 63 114-176 658-720 (970)
137 PF07888 CALCOCO1: Calcium bin 86.1 4.8 0.0001 40.8 9.2 7 26-32 55-61 (546)
138 PRK13922 rod shape-determining 86.0 5.9 0.00013 35.6 9.0 46 114-163 63-108 (276)
139 PF11559 ADIP: Afadin- and alp 85.8 9.9 0.00021 31.2 9.6 21 81-101 48-68 (151)
140 PF04156 IncA: IncA protein; 85.7 7 0.00015 32.9 8.9 57 117-173 127-183 (191)
141 KOG4571 Activating transcripti 85.7 9.6 0.00021 35.9 10.4 50 117-173 238-287 (294)
142 TIGR00219 mreC rod shape-deter 85.6 3.2 6.9E-05 38.2 7.2 47 117-166 63-109 (283)
143 KOG4005 Transcription factor X 85.5 4.3 9.3E-05 37.6 7.8 90 63-166 54-150 (292)
144 smart00787 Spc7 Spc7 kinetocho 85.4 5.1 0.00011 37.6 8.6 6 17-22 23-28 (312)
145 COG1256 FlgK Flagellar hook-as 85.3 8.2 0.00018 39.0 10.5 81 85-166 108-188 (552)
146 PF07889 DUF1664: Protein of u 85.2 5.5 0.00012 33.0 7.7 50 124-173 65-114 (126)
147 PF01166 TSC22: TSC-22/dip/bun 85.1 1.6 3.5E-05 32.0 4.0 28 135-162 15-42 (59)
148 PF07200 Mod_r: Modifier of ru 85.0 8.7 0.00019 31.4 8.9 61 116-176 30-90 (150)
149 KOG4797 Transcriptional regula 85.0 3.2 6.9E-05 34.1 6.1 48 115-164 50-97 (123)
150 PF05266 DUF724: Protein of un 84.9 7 0.00015 34.3 8.7 46 127-172 131-176 (190)
151 PF08614 ATG16: Autophagy prot 84.9 5.4 0.00012 34.3 8.0 46 123-168 133-178 (194)
152 PTZ00454 26S protease regulato 84.8 2.9 6.3E-05 40.2 6.9 54 116-169 11-64 (398)
153 PF15458 NTR2: Nineteen comple 84.6 12 0.00026 34.0 10.4 19 78-96 142-160 (254)
154 PF14662 CCDC155: Coiled-coil 84.6 8.3 0.00018 34.3 9.0 61 114-174 54-114 (193)
155 PF10473 CENP-F_leu_zip: Leuci 84.6 10 0.00022 31.9 9.2 15 88-102 20-34 (140)
156 PF04156 IncA: IncA protein; 84.5 9 0.0002 32.3 9.0 88 80-171 83-174 (191)
157 PF05377 FlaC_arch: Flagella a 84.3 3.9 8.4E-05 29.6 5.6 34 131-164 4-37 (55)
158 PF00038 Filament: Intermediat 84.0 6.7 0.00014 35.4 8.5 28 115-142 211-238 (312)
159 PF05103 DivIVA: DivIVA protei 83.9 0.62 1.3E-05 36.8 1.6 49 116-164 21-69 (131)
160 PRK03992 proteasome-activating 83.8 3.8 8.2E-05 38.9 7.1 48 124-178 5-52 (389)
161 COG2433 Uncharacterized conser 83.7 4.5 9.8E-05 41.5 7.9 40 115-154 424-463 (652)
162 PRK09039 hypothetical protein; 83.7 7.5 0.00016 36.7 9.0 49 125-173 135-183 (343)
163 PF06632 XRCC4: DNA double-str 83.7 8.5 0.00018 36.8 9.3 38 121-158 145-182 (342)
164 PF05008 V-SNARE: Vesicle tran 83.6 5.9 0.00013 28.9 6.6 58 109-172 21-78 (79)
165 PF14282 FlxA: FlxA-like prote 83.6 6.9 0.00015 31.0 7.4 55 119-173 18-76 (106)
166 TIGR02169 SMC_prok_A chromosom 83.4 9.4 0.0002 39.9 10.3 8 44-51 641-648 (1164)
167 PF09304 Cortex-I_coil: Cortex 83.4 9.4 0.0002 31.1 8.1 40 125-164 42-81 (107)
168 PRK14127 cell division protein 83.4 7.6 0.00017 31.5 7.6 28 146-173 42-69 (109)
169 PRK10803 tol-pal system protei 83.2 6.6 0.00014 35.7 8.1 50 122-171 56-105 (263)
170 PF09304 Cortex-I_coil: Cortex 83.0 9.3 0.0002 31.1 8.0 38 128-165 38-75 (107)
171 COG3937 Uncharacterized conser 83.0 9 0.0002 31.2 7.9 58 115-172 41-107 (108)
172 PF11544 Spc42p: Spindle pole 82.9 8.4 0.00018 29.6 7.3 44 127-170 5-48 (76)
173 PF14988 DUF4515: Domain of un 82.7 11 0.00023 33.4 9.0 46 125-170 154-199 (206)
174 PF03962 Mnd1: Mnd1 family; I 82.4 8.3 0.00018 33.6 8.1 17 156-172 111-127 (188)
175 PF05377 FlaC_arch: Flagella a 82.4 5 0.00011 29.0 5.6 37 137-173 3-39 (55)
176 PF00038 Filament: Intermediat 82.4 32 0.00068 31.1 12.2 16 122-137 56-71 (312)
177 PF04102 SlyX: SlyX; InterPro 82.4 7.6 0.00017 28.5 6.8 49 120-168 4-52 (69)
178 KOG3647 Predicted coiled-coil 82.3 4.8 0.0001 37.9 6.9 59 125-183 110-169 (338)
179 PRK02119 hypothetical protein; 82.2 14 0.0003 27.6 8.2 53 116-168 5-57 (73)
180 PF15397 DUF4618: Domain of un 82.2 6.8 0.00015 36.2 7.8 83 88-172 141-224 (258)
181 PF15070 GOLGA2L5: Putative go 82.2 7.5 0.00016 39.8 8.9 55 120-174 4-62 (617)
182 TIGR03752 conj_TIGR03752 integ 82.0 6.7 0.00015 39.1 8.2 23 142-164 117-139 (472)
183 COG2919 Septum formation initi 82.0 12 0.00027 30.0 8.4 68 81-156 18-86 (117)
184 PF15070 GOLGA2L5: Putative go 81.7 7.2 0.00016 40.0 8.5 56 120-175 15-70 (617)
185 PF13094 CENP-Q: CENP-Q, a CEN 81.7 18 0.00039 30.1 9.6 64 110-173 17-80 (160)
186 PRK10803 tol-pal system protei 81.7 7.8 0.00017 35.2 8.0 33 137-169 57-89 (263)
187 PF07716 bZIP_2: Basic region 81.6 15 0.00032 25.4 8.3 29 120-148 25-53 (54)
188 TIGR02492 flgK_ends flagellar 81.6 17 0.00038 33.6 10.4 78 88-167 107-185 (322)
189 PRK03992 proteasome-activating 81.5 5.7 0.00012 37.7 7.3 44 119-162 7-50 (389)
190 TIGR00606 rad50 rad50. This fa 81.5 12 0.00027 41.0 10.7 84 84-171 849-932 (1311)
191 TIGR01069 mutS2 MutS2 family p 81.5 9.4 0.0002 39.9 9.4 15 159-173 576-590 (771)
192 PF07200 Mod_r: Modifier of ru 81.4 9 0.00019 31.3 7.6 53 121-173 28-80 (150)
193 PF13815 Dzip-like_N: Iguana/D 81.3 16 0.00034 29.3 8.8 93 79-174 17-113 (118)
194 PF12709 Kinetocho_Slk19: Cent 81.2 16 0.00035 28.7 8.4 27 139-165 47-73 (87)
195 KOG3433 Protein involved in me 81.1 8.9 0.00019 34.2 7.8 76 96-172 47-140 (203)
196 PF06810 Phage_GP20: Phage min 81.1 8.9 0.00019 32.4 7.6 8 146-153 56-63 (155)
197 PRK04325 hypothetical protein; 81.0 8.6 0.00019 28.8 6.7 49 120-168 9-57 (74)
198 COG5570 Uncharacterized small 81.0 5.5 0.00012 28.8 5.3 21 150-170 35-55 (57)
199 PF10211 Ax_dynein_light: Axon 80.6 11 0.00023 32.8 8.2 18 85-102 59-76 (189)
200 PF02388 FemAB: FemAB family; 80.5 11 0.00023 36.2 8.9 78 92-173 218-298 (406)
201 PRK04654 sec-independent trans 80.5 15 0.00032 33.2 9.1 49 117-166 31-79 (214)
202 PF06103 DUF948: Bacterial pro 80.4 22 0.00048 26.7 9.1 32 122-153 21-52 (90)
203 PF10146 zf-C4H2: Zinc finger- 80.4 17 0.00036 32.9 9.6 19 152-170 85-103 (230)
204 KOG4343 bZIP transcription fac 80.3 2.2 4.8E-05 43.3 4.3 40 137-176 305-344 (655)
205 PF12329 TMF_DNA_bd: TATA elem 80.2 22 0.00048 26.6 9.3 54 119-172 18-71 (74)
206 COG0497 RecN ATPase involved i 80.1 20 0.00044 36.5 11.0 85 84-176 296-389 (557)
207 PRK04406 hypothetical protein; 80.1 12 0.00025 28.3 7.2 49 119-167 10-58 (75)
208 PRK15396 murein lipoprotein; P 80.0 12 0.00027 28.6 7.3 41 121-161 26-66 (78)
209 PF12718 Tropomyosin_1: Tropom 79.7 12 0.00026 31.3 7.8 8 164-171 82-89 (143)
210 PF02403 Seryl_tRNA_N: Seryl-t 79.6 14 0.0003 28.6 7.8 57 118-174 41-100 (108)
211 PF04012 PspA_IM30: PspA/IM30 79.6 25 0.00054 30.4 10.1 51 123-173 101-151 (221)
212 PRK00409 recombination and DNA 79.5 9.2 0.0002 40.0 8.7 14 159-172 581-594 (782)
213 PRK05771 V-type ATP synthase s 79.5 14 0.00031 37.3 9.8 20 84-103 49-68 (646)
214 COG2919 Septum formation initi 79.2 15 0.00033 29.5 8.1 41 130-170 46-86 (117)
215 PF14282 FlxA: FlxA-like prote 79.1 8.8 0.00019 30.4 6.6 60 112-171 18-81 (106)
216 PRK05771 V-type ATP synthase s 79.1 6.5 0.00014 39.7 7.2 31 137-167 96-126 (646)
217 PF07888 CALCOCO1: Calcium bin 79.0 14 0.0003 37.6 9.4 27 146-172 204-230 (546)
218 PF10458 Val_tRNA-synt_C: Valy 78.8 21 0.00046 25.7 8.0 21 154-174 45-65 (66)
219 COG1340 Uncharacterized archae 78.7 26 0.00056 33.1 10.5 73 86-172 28-100 (294)
220 PF04325 DUF465: Protein of un 78.6 8.3 0.00018 26.4 5.5 17 152-168 31-47 (49)
221 KOG0995 Centromere-associated 78.6 9.3 0.0002 39.0 8.0 25 148-172 339-363 (581)
222 PF13870 DUF4201: Domain of un 78.6 19 0.00041 30.4 8.9 69 110-178 74-142 (177)
223 PRK07739 flgK flagellar hook-a 78.5 21 0.00046 35.3 10.5 77 89-166 120-196 (507)
224 TIGR01554 major_cap_HK97 phage 78.5 9 0.0002 35.9 7.5 58 87-148 5-62 (378)
225 PRK02224 chromosome segregatio 78.4 17 0.00037 37.6 10.1 41 133-173 257-297 (880)
226 KOG0977 Nuclear envelope prote 78.4 9.7 0.00021 38.6 8.1 35 140-174 154-188 (546)
227 KOG4360 Uncharacterized coiled 78.4 13 0.00028 37.8 8.8 48 110-157 212-263 (596)
228 COG1579 Zn-ribbon protein, pos 78.3 13 0.00028 34.0 8.2 10 199-208 189-198 (239)
229 PF12777 MT: Microtubule-bindi 78.3 17 0.00037 34.1 9.3 43 116-158 231-273 (344)
230 KOG2391 Vacuolar sorting prote 78.2 8.1 0.00017 37.3 7.1 9 78-86 212-220 (365)
231 PF12777 MT: Microtubule-bindi 78.2 13 0.00029 34.8 8.6 52 122-173 230-281 (344)
232 PRK02793 phi X174 lysis protei 78.2 17 0.00037 27.0 7.5 50 119-168 7-56 (72)
233 PRK04778 septation ring format 78.0 12 0.00026 37.5 8.6 62 115-176 378-439 (569)
234 PF15294 Leu_zip: Leucine zipp 77.7 8.4 0.00018 36.0 6.9 58 111-169 117-174 (278)
235 PRK03918 chromosome segregatio 77.7 19 0.0004 37.1 10.1 12 90-101 174-185 (880)
236 PF05837 CENP-H: Centromere pr 77.5 21 0.00045 28.3 8.3 52 121-173 18-69 (106)
237 KOG4603 TBP-1 interacting prot 77.3 13 0.00027 33.0 7.5 53 123-175 89-143 (201)
238 KOG0249 LAR-interacting protei 77.3 10 0.00023 39.9 8.0 41 134-174 216-256 (916)
239 TIGR00414 serS seryl-tRNA synt 77.3 9.2 0.0002 37.0 7.4 51 123-173 40-94 (418)
240 PF04012 PspA_IM30: PspA/IM30 77.2 25 0.00054 30.4 9.4 64 111-174 82-145 (221)
241 PF03962 Mnd1: Mnd1 family; I 77.2 16 0.00034 31.8 8.1 15 125-139 74-88 (188)
242 KOG3156 Uncharacterized membra 77.1 18 0.00038 32.8 8.6 39 135-173 102-141 (220)
243 PF09789 DUF2353: Uncharacteri 76.8 11 0.00025 35.7 7.7 46 129-174 135-180 (319)
244 PF04880 NUDE_C: NUDE protein, 76.8 2.8 6.1E-05 36.3 3.4 15 115-129 9-23 (166)
245 COG1579 Zn-ribbon protein, pos 76.6 16 0.00035 33.4 8.3 13 138-150 49-61 (239)
246 PF10018 Med4: Vitamin-D-recep 76.6 46 0.001 28.6 10.9 38 123-160 25-62 (188)
247 PRK05431 seryl-tRNA synthetase 76.6 21 0.00046 34.6 9.7 51 123-173 38-98 (425)
248 PF14389 Lzipper-MIP1: Leucine 76.5 27 0.00059 26.9 8.5 26 149-174 55-80 (88)
249 PF10883 DUF2681: Protein of u 76.4 16 0.00035 28.6 7.2 25 122-146 25-49 (87)
250 KOG1962 B-cell receptor-associ 76.4 10 0.00023 34.2 6.9 34 137-170 161-194 (216)
251 PF07798 DUF1640: Protein of u 76.3 26 0.00057 29.8 9.2 8 93-100 59-66 (177)
252 PF13851 GAS: Growth-arrest sp 76.2 28 0.00061 30.5 9.6 45 110-155 84-128 (201)
253 PF07246 Phlebovirus_NSM: Phle 76.2 20 0.00044 33.3 8.9 61 109-173 167-227 (264)
254 KOG0250 DNA repair protein RAD 76.2 29 0.00062 38.0 11.2 84 85-174 372-462 (1074)
255 PRK07191 flgK flagellar hook-a 76.1 24 0.00052 34.4 9.9 77 89-166 108-184 (456)
256 PRK00295 hypothetical protein; 76.0 14 0.00031 27.2 6.5 48 121-168 6-53 (68)
257 PF12709 Kinetocho_Slk19: Cent 76.0 13 0.00027 29.3 6.4 50 109-160 33-82 (87)
258 KOG0971 Microtubule-associated 75.9 14 0.0003 40.0 8.6 18 122-139 370-387 (1243)
259 PRK07521 flgK flagellar hook-a 75.7 26 0.00057 34.4 10.2 76 89-166 103-179 (483)
260 PRK05431 seryl-tRNA synthetase 75.7 17 0.00036 35.3 8.7 29 139-167 71-99 (425)
261 PF05565 Sipho_Gp157: Siphovir 75.7 48 0.001 28.0 10.9 81 89-173 5-86 (162)
262 PRK14011 prefoldin subunit alp 75.5 20 0.00043 30.2 8.0 52 115-172 86-137 (144)
263 PF00769 ERM: Ezrin/radixin/mo 75.5 14 0.0003 33.4 7.6 56 118-173 59-114 (246)
264 PRK00409 recombination and DNA 75.4 17 0.00037 38.1 9.2 10 113-122 502-511 (782)
265 PRK02224 chromosome segregatio 75.4 29 0.00063 35.9 10.8 22 115-136 532-553 (880)
266 PRK00846 hypothetical protein; 75.3 22 0.00048 27.2 7.5 50 119-168 12-61 (77)
267 PRK00736 hypothetical protein; 75.3 28 0.0006 25.7 7.9 50 120-169 5-54 (68)
268 PRK04863 mukB cell division pr 75.1 14 0.00031 41.5 9.0 95 84-178 948-1050(1486)
269 PRK06665 flgK flagellar hook-a 75.0 27 0.00059 35.7 10.3 75 90-166 121-196 (627)
270 KOG0804 Cytoplasmic Zn-finger 74.9 18 0.00038 36.2 8.6 21 153-173 426-446 (493)
271 TIGR02168 SMC_prok_B chromosom 74.9 29 0.00064 36.0 10.7 49 119-167 439-487 (1179)
272 PF04999 FtsL: Cell division p 74.9 18 0.00039 27.5 7.1 36 125-160 33-68 (97)
273 PRK05683 flgK flagellar hook-a 74.7 24 0.00052 36.5 9.9 77 89-166 108-184 (676)
274 KOG2751 Beclin-like protein [S 74.7 12 0.00027 37.0 7.5 18 156-173 247-264 (447)
275 PF06120 Phage_HK97_TLTM: Tail 74.6 20 0.00044 33.8 8.7 15 118-132 50-64 (301)
276 PF10883 DUF2681: Protein of u 74.6 39 0.00085 26.4 9.0 41 114-154 10-50 (87)
277 KOG0982 Centrosomal protein Nu 74.6 17 0.00037 36.2 8.4 37 135-171 298-334 (502)
278 PF05010 TACC: Transforming ac 74.6 37 0.00081 30.3 9.9 83 89-174 94-180 (207)
279 PF00769 ERM: Ezrin/radixin/mo 74.4 16 0.00035 33.0 7.7 35 132-166 80-114 (246)
280 PF05008 V-SNARE: Vesicle tran 74.2 31 0.00067 25.1 8.4 36 115-150 34-70 (79)
281 KOG0995 Centromere-associated 74.1 31 0.00067 35.3 10.3 10 13-22 137-146 (581)
282 TIGR02209 ftsL_broad cell divi 74.1 25 0.00055 25.8 7.6 34 122-155 26-59 (85)
283 PRK09343 prefoldin subunit bet 73.4 41 0.00089 27.2 9.2 32 115-146 9-40 (121)
284 PF13747 DUF4164: Domain of un 73.2 20 0.00044 27.7 7.0 10 124-133 12-21 (89)
285 TIGR02338 gimC_beta prefoldin, 73.1 43 0.00094 26.3 9.1 34 115-148 5-38 (110)
286 COG1730 GIM5 Predicted prefold 73.0 17 0.00037 30.8 7.1 45 115-162 92-136 (145)
287 TIGR01834 PHA_synth_III_E poly 72.9 23 0.00049 33.8 8.6 60 111-170 254-318 (320)
288 TIGR02977 phageshock_pspA phag 72.8 35 0.00076 30.0 9.3 54 120-173 99-152 (219)
289 TIGR02680 conserved hypothetic 72.7 18 0.00039 40.2 9.0 35 96-133 209-243 (1353)
290 PF01763 Herpes_UL6: Herpesvir 72.7 12 0.00025 38.2 7.0 45 111-155 361-405 (557)
291 PF05164 ZapA: Cell division p 72.7 34 0.00075 25.0 8.0 37 87-127 27-63 (89)
292 PF14645 Chibby: Chibby family 72.7 14 0.00031 30.0 6.4 44 128-171 72-115 (116)
293 PRK10869 recombination and rep 72.6 40 0.00088 33.8 10.8 86 85-177 296-389 (553)
294 PRK08147 flgK flagellar hook-a 72.5 35 0.00077 33.9 10.3 77 89-166 109-185 (547)
295 PF10779 XhlA: Haemolysin XhlA 72.5 28 0.00062 25.5 7.4 25 124-148 3-27 (71)
296 PF10234 Cluap1: Clusterin-ass 72.4 34 0.00074 31.8 9.5 56 118-173 174-236 (267)
297 PF09738 DUF2051: Double stran 72.2 20 0.00043 33.8 8.0 61 109-173 105-172 (302)
298 PF03961 DUF342: Protein of un 72.1 27 0.00059 33.8 9.2 33 142-174 376-408 (451)
299 TIGR01242 26Sp45 26S proteasom 72.1 10 0.00022 35.3 6.1 33 146-178 11-43 (364)
300 PF14257 DUF4349: Domain of un 72.1 23 0.00049 31.6 8.1 50 124-173 136-187 (262)
301 PF01920 Prefoldin_2: Prefoldi 71.9 11 0.00023 28.5 5.2 66 89-155 30-97 (106)
302 PLN02678 seryl-tRNA synthetase 71.9 23 0.0005 35.0 8.7 29 145-173 75-103 (448)
303 KOG4451 Uncharacterized conser 71.8 21 0.00045 33.1 7.7 31 179-209 190-224 (286)
304 TIGR03185 DNA_S_dndD DNA sulfu 71.5 21 0.00045 36.2 8.5 39 116-154 424-462 (650)
305 PF02996 Prefoldin: Prefoldin 71.3 19 0.00041 28.0 6.6 41 115-158 75-115 (120)
306 PF06103 DUF948: Bacterial pro 71.2 41 0.00089 25.2 9.5 52 115-166 21-72 (90)
307 PRK08471 flgK flagellar hook-a 71.2 37 0.00081 34.6 10.3 76 89-166 113-189 (613)
308 PLN02678 seryl-tRNA synthetase 71.2 34 0.00073 33.8 9.7 21 153-173 76-96 (448)
309 PF14988 DUF4515: Domain of un 71.1 26 0.00057 31.0 8.1 51 118-168 154-204 (206)
310 PF03961 DUF342: Protein of un 71.1 26 0.00057 33.9 8.8 22 152-173 379-400 (451)
311 PF13863 DUF4200: Domain of un 70.8 41 0.00089 26.4 8.5 31 143-173 76-106 (126)
312 PF11690 DUF3287: Protein of u 70.8 17 0.00036 29.7 6.2 44 117-179 39-82 (109)
313 PF08232 Striatin: Striatin fa 70.6 37 0.0008 28.1 8.4 53 121-173 5-64 (134)
314 PF08826 DMPK_coil: DMPK coile 70.6 25 0.00055 25.7 6.6 40 134-173 18-57 (61)
315 COG3879 Uncharacterized protei 70.5 20 0.00043 33.0 7.4 43 124-166 54-96 (247)
316 PF07334 IFP_35_N: Interferon- 70.5 6.7 0.00014 30.1 3.7 22 152-173 4-25 (76)
317 PRK03947 prefoldin subunit alp 70.4 20 0.00044 29.0 6.8 36 120-155 6-41 (140)
318 PF08781 DP: Transcription fac 70.4 24 0.00053 29.9 7.4 47 127-173 1-47 (142)
319 PF06637 PV-1: PV-1 protein (P 70.3 54 0.0012 32.4 10.5 24 149-172 350-373 (442)
320 COG0216 PrfA Protein chain rel 70.3 53 0.0012 31.9 10.4 91 88-178 10-106 (363)
321 COG3352 FlaC Putative archaeal 70.2 72 0.0016 27.6 11.4 86 88-173 47-133 (157)
322 PF09730 BicD: Microtubule-ass 70.2 23 0.0005 37.2 8.6 82 87-168 29-117 (717)
323 KOG0982 Centrosomal protein Nu 70.0 23 0.00051 35.3 8.2 52 122-173 299-350 (502)
324 PF06810 Phage_GP20: Phage min 70.0 42 0.00091 28.4 8.8 14 152-165 55-68 (155)
325 TIGR03185 DNA_S_dndD DNA sulfu 70.0 62 0.0013 32.8 11.5 24 125-148 440-463 (650)
326 PF09738 DUF2051: Double stran 69.8 26 0.00057 33.0 8.2 47 125-171 110-156 (302)
327 TIGR00606 rad50 rad50. This fa 69.6 68 0.0015 35.4 12.5 57 117-173 309-365 (1311)
328 KOG0804 Cytoplasmic Zn-finger 69.5 68 0.0015 32.2 11.3 20 138-157 386-405 (493)
329 KOG3650 Predicted coiled-coil 69.3 13 0.00028 30.3 5.2 64 118-181 47-111 (120)
330 KOG1029 Endocytic adaptor prot 69.3 66 0.0014 34.7 11.6 19 119-137 485-503 (1118)
331 PRK10698 phage shock protein P 69.3 46 0.00099 29.6 9.3 55 119-173 98-152 (222)
332 COG1792 MreC Cell shape-determ 69.2 18 0.00038 33.5 6.9 46 115-164 61-106 (284)
333 KOG0946 ER-Golgi vesicle-tethe 69.2 35 0.00077 36.6 9.7 72 108-179 638-716 (970)
334 PF05600 DUF773: Protein of un 69.1 23 0.0005 35.4 8.1 44 130-173 449-492 (507)
335 PRK09973 putative outer membra 69.1 31 0.00066 27.0 7.1 43 121-163 25-67 (85)
336 PRK15396 murein lipoprotein; P 69.0 30 0.00065 26.5 7.0 47 127-173 25-71 (78)
337 TIGR01242 26Sp45 26S proteasom 69.0 11 0.00024 35.1 5.6 34 135-168 7-40 (364)
338 PF05701 WEMBL: Weak chloropla 68.9 31 0.00067 34.4 9.0 43 132-174 307-356 (522)
339 PF07407 Seadorna_VP6: Seadorn 68.8 13 0.00028 36.0 6.0 45 127-173 32-76 (420)
340 TIGR03689 pup_AAA proteasome A 68.7 14 0.0003 37.1 6.5 43 123-179 4-46 (512)
341 PF10205 KLRAQ: Predicted coil 68.7 61 0.0013 26.2 9.2 46 129-174 28-73 (102)
342 KOG1029 Endocytic adaptor prot 68.6 11 0.00023 40.2 5.8 43 134-176 479-521 (1118)
343 PF11544 Spc42p: Spindle pole 68.5 52 0.0011 25.3 8.1 53 117-169 2-54 (76)
344 COG4467 Regulator of replicati 68.2 35 0.00076 28.0 7.6 54 109-166 1-54 (114)
345 PF05529 Bap31: B-cell recepto 68.1 38 0.00081 28.9 8.3 30 144-173 157-186 (192)
346 COG1340 Uncharacterized archae 68.1 41 0.00089 31.8 9.1 36 137-172 51-86 (294)
347 PLN02320 seryl-tRNA synthetase 68.1 41 0.0009 33.8 9.7 51 123-173 103-162 (502)
348 COG2900 SlyX Uncharacterized p 68.0 52 0.0011 25.1 8.9 53 123-175 4-56 (72)
349 KOG1853 LIS1-interacting prote 67.9 33 0.00072 32.3 8.3 82 85-173 31-116 (333)
350 PRK14127 cell division protein 67.6 13 0.00028 30.1 5.0 36 115-150 32-67 (109)
351 PF05600 DUF773: Protein of un 67.5 40 0.00086 33.8 9.4 55 120-174 432-486 (507)
352 PF09755 DUF2046: Uncharacteri 67.4 29 0.00064 32.9 8.0 17 82-98 45-61 (310)
353 cd00632 Prefoldin_beta Prefold 67.4 54 0.0012 25.4 8.4 46 109-154 52-97 (105)
354 PF09726 Macoilin: Transmembra 67.3 12 0.00027 38.8 6.0 9 125-133 423-431 (697)
355 PF05384 DegS: Sensor protein 67.2 60 0.0013 27.9 9.3 57 113-172 2-58 (159)
356 cd00632 Prefoldin_beta Prefold 67.1 29 0.00063 27.0 6.8 51 118-168 54-104 (105)
357 KOG4571 Activating transcripti 67.0 19 0.00041 34.0 6.6 69 78-154 221-289 (294)
358 PF10168 Nup88: Nuclear pore c 66.9 40 0.00087 35.2 9.6 56 110-165 536-603 (717)
359 PF04849 HAP1_N: HAP1 N-termin 66.9 32 0.0007 32.6 8.2 52 122-173 215-266 (306)
360 KOG0976 Rho/Rac1-interacting s 66.9 23 0.0005 38.1 7.8 44 129-172 115-158 (1265)
361 KOG4438 Centromere-associated 66.8 29 0.00063 34.4 8.1 29 109-137 268-296 (446)
362 PF04849 HAP1_N: HAP1 N-termin 66.7 20 0.00043 34.0 6.7 40 121-160 161-200 (306)
363 PF08647 BRE1: BRE1 E3 ubiquit 66.7 28 0.00062 27.0 6.6 15 149-163 53-67 (96)
364 PF05700 BCAS2: Breast carcino 66.6 63 0.0014 28.5 9.6 31 143-173 177-207 (221)
365 PRK06799 flgK flagellar hook-a 66.5 65 0.0014 31.3 10.5 74 90-165 114-188 (431)
366 KOG0161 Myosin class II heavy 66.3 30 0.00066 40.1 9.2 58 116-173 1480-1537(1930)
367 PF10205 KLRAQ: Predicted coil 66.2 65 0.0014 26.0 8.7 43 125-167 31-73 (102)
368 PRK06945 flgK flagellar hook-a 66.1 46 0.001 34.3 9.8 77 90-167 110-186 (651)
369 smart00502 BBC B-Box C-termina 65.7 56 0.0012 24.6 8.5 28 145-172 76-103 (127)
370 KOG0977 Nuclear envelope prote 65.7 19 0.00041 36.6 6.8 27 122-148 164-190 (546)
371 PF07412 Geminin: Geminin; In 65.5 18 0.00038 32.4 5.9 46 120-165 107-156 (200)
372 KOG4447 Transcription factor T 65.5 7.6 0.00016 33.7 3.5 45 82-126 29-73 (173)
373 KOG0964 Structural maintenance 65.4 46 0.001 36.4 9.8 61 112-172 257-317 (1200)
374 PF11068 YlqD: YlqD protein; 65.1 80 0.0017 26.2 10.1 66 109-174 16-86 (131)
375 PF11853 DUF3373: Protein of u 65.1 11 0.00024 37.7 5.0 28 142-169 32-59 (489)
376 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.1 44 0.00095 27.1 7.8 12 122-133 68-79 (132)
377 PF06785 UPF0242: Uncharacteri 65.1 46 0.001 32.4 8.9 59 114-172 86-158 (401)
378 PF15233 SYCE1: Synaptonemal c 65.0 68 0.0015 27.1 8.8 43 116-158 9-51 (134)
379 TIGR00634 recN DNA repair prot 65.0 22 0.00048 35.4 7.1 29 110-139 145-173 (563)
380 PF00261 Tropomyosin: Tropomyo 64.8 72 0.0016 28.3 9.7 11 160-170 202-212 (237)
381 PF06216 RTBV_P46: Rice tungro 64.7 65 0.0014 30.5 9.6 64 109-172 53-116 (389)
382 PF13600 DUF4140: N-terminal d 64.6 15 0.00033 28.1 4.8 11 153-163 89-99 (104)
383 KOG2751 Beclin-like protein [S 64.5 23 0.0005 35.2 6.9 47 127-173 183-229 (447)
384 KOG3540 Beta amyloid precursor 64.5 86 0.0019 32.0 10.9 57 77-133 253-309 (615)
385 PF02996 Prefoldin: Prefoldin 64.4 28 0.00062 26.9 6.3 45 125-169 75-119 (120)
386 TIGR00634 recN DNA repair prot 64.2 67 0.0015 32.0 10.3 86 85-177 301-394 (563)
387 PRK03947 prefoldin subunit alp 64.2 33 0.00073 27.7 6.9 45 115-162 92-136 (140)
388 PRK11020 hypothetical protein; 64.1 40 0.00087 27.9 7.2 16 121-136 32-47 (118)
389 PF04999 FtsL: Cell division p 63.9 24 0.00051 26.8 5.7 31 124-154 39-69 (97)
390 PF10267 Tmemb_cc2: Predicted 63.8 55 0.0012 32.0 9.4 59 110-168 258-318 (395)
391 PRK12714 flgK flagellar hook-a 63.8 60 0.0013 33.2 10.0 77 89-166 108-184 (624)
392 KOG0709 CREB/ATF family transc 63.8 9.4 0.0002 38.1 4.2 47 120-173 272-318 (472)
393 TIGR00293 prefoldin, archaeal 63.7 23 0.0005 28.0 5.8 35 123-157 2-36 (126)
394 PF08286 Spc24: Spc24 subunit 63.6 2.5 5.4E-05 33.8 0.2 43 131-173 3-45 (118)
395 PRK11546 zraP zinc resistance 63.1 95 0.0021 26.4 9.7 59 116-177 57-122 (143)
396 KOG4643 Uncharacterized coiled 63.1 45 0.00097 36.6 9.2 60 114-173 395-454 (1195)
397 PF03954 Lectin_N: Hepatic lec 63.0 20 0.00043 30.4 5.4 51 123-173 58-112 (138)
398 PF12711 Kinesin-relat_1: Kine 62.9 24 0.00051 27.6 5.5 9 93-101 4-12 (86)
399 PLN02320 seryl-tRNA synthetase 62.9 44 0.00096 33.6 8.7 35 138-172 134-168 (502)
400 TIGR02977 phageshock_pspA phag 62.9 70 0.0015 28.1 9.2 57 117-173 89-145 (219)
401 TIGR02338 gimC_beta prefoldin, 62.8 33 0.00073 26.9 6.5 64 93-156 39-103 (110)
402 PF09766 FimP: Fms-interacting 62.7 35 0.00076 32.4 7.7 39 136-174 103-141 (355)
403 PRK11415 hypothetical protein; 62.6 45 0.00097 24.9 6.8 20 120-139 17-36 (74)
404 PF13600 DUF4140: N-terminal d 62.5 15 0.00032 28.2 4.3 16 124-139 74-89 (104)
405 PRK01156 chromosome segregatio 62.4 50 0.0011 34.4 9.4 29 143-171 213-241 (895)
406 PF11418 Scaffolding_pro: Phi2 62.4 74 0.0016 25.3 8.1 67 87-164 4-70 (97)
407 KOG1937 Uncharacterized conser 62.3 88 0.0019 31.6 10.5 59 115-173 288-356 (521)
408 PF06320 GCN5L1: GCN5-like pro 62.2 85 0.0019 25.6 9.6 48 126-173 39-86 (121)
409 PF10482 CtIP_N: Tumour-suppre 62.1 26 0.00056 29.0 5.8 37 128-164 83-119 (120)
410 KOG3584 cAMP response element 61.9 9.1 0.0002 36.4 3.5 29 119-147 311-339 (348)
411 PF14257 DUF4349: Domain of un 61.9 51 0.0011 29.3 8.3 86 88-173 105-194 (262)
412 KOG2685 Cystoskeletal protein 61.8 73 0.0016 31.5 9.8 65 114-178 49-121 (421)
413 PRK10947 global DNA-binding tr 61.8 60 0.0013 27.2 8.1 60 117-178 6-72 (135)
414 PF04859 DUF641: Plant protein 61.7 33 0.00071 28.7 6.5 16 81-96 51-66 (131)
415 PRK01156 chromosome segregatio 61.7 91 0.002 32.6 11.1 34 116-149 677-710 (895)
416 PF08912 Rho_Binding: Rho Bind 61.5 43 0.00092 25.3 6.4 32 126-157 2-33 (69)
417 PF11365 DUF3166: Protein of u 61.5 35 0.00076 27.2 6.3 42 124-172 5-46 (96)
418 cd07627 BAR_Vps5p The Bin/Amph 61.4 46 0.001 29.0 7.7 54 114-167 116-169 (216)
419 PF04871 Uso1_p115_C: Uso1 / p 61.3 94 0.002 25.7 9.2 18 159-176 95-112 (136)
420 cd07596 BAR_SNX The Bin/Amphip 61.3 55 0.0012 27.2 7.9 9 146-154 150-158 (218)
421 PF15254 CCDC14: Coiled-coil d 61.3 1.4E+02 0.0029 32.1 12.1 15 84-98 400-414 (861)
422 PF13118 DUF3972: Protein of u 61.1 89 0.0019 26.1 8.9 62 113-174 63-125 (126)
423 KOG0018 Structural maintenance 61.1 48 0.001 36.4 9.0 93 79-173 653-750 (1141)
424 KOG0971 Microtubule-associated 61.1 33 0.00072 37.3 7.7 39 134-172 403-441 (1243)
425 KOG0243 Kinesin-like protein [ 61.1 24 0.00053 38.4 6.9 25 107-131 398-422 (1041)
426 COG1196 Smc Chromosome segrega 61.1 54 0.0012 35.7 9.6 6 177-182 514-519 (1163)
427 PF05929 Phage_GPO: Phage caps 61.1 1.1E+02 0.0024 28.6 10.5 91 83-176 165-256 (276)
428 PRK08871 flgK flagellar hook-a 61.0 61 0.0013 33.3 9.5 76 89-165 111-186 (626)
429 PF05103 DivIVA: DivIVA protei 61.0 5.3 0.00011 31.5 1.6 41 131-171 29-69 (131)
430 COG1196 Smc Chromosome segrega 61.0 33 0.00072 37.3 8.1 25 144-168 463-487 (1163)
431 PF10481 CENP-F_N: Cenp-F N-te 60.8 44 0.00094 31.6 7.7 25 113-137 11-35 (307)
432 PF09730 BicD: Microtubule-ass 60.6 58 0.0013 34.3 9.4 52 121-172 35-86 (717)
433 PF00261 Tropomyosin: Tropomyo 60.4 96 0.0021 27.5 9.7 14 159-172 173-186 (237)
434 PF15290 Syntaphilin: Golgi-lo 60.3 74 0.0016 30.2 9.1 14 161-174 155-168 (305)
435 PF09755 DUF2046: Uncharacteri 60.1 1.1E+02 0.0024 29.2 10.3 15 159-173 189-203 (310)
436 TIGR02231 conserved hypothetic 60.0 62 0.0013 31.8 9.1 48 115-162 126-173 (525)
437 COG5570 Uncharacterized small 59.9 22 0.00048 25.7 4.4 43 121-163 6-55 (57)
438 KOG4403 Cell surface glycoprot 59.8 51 0.0011 33.2 8.4 18 156-173 303-320 (575)
439 PF10498 IFT57: Intra-flagella 59.4 80 0.0017 30.4 9.5 25 151-175 297-321 (359)
440 PF08700 Vps51: Vps51/Vps67; 59.4 67 0.0015 23.5 8.4 23 115-137 21-43 (87)
441 KOG2077 JNK/SAPK-associated pr 59.2 22 0.00048 36.8 6.0 48 127-174 301-362 (832)
442 PF01486 K-box: K-box region; 59.1 40 0.00087 25.9 6.2 28 137-164 71-98 (100)
443 PF07047 OPA3: Optic atrophy 3 59.0 73 0.0016 26.2 8.1 15 76-90 40-54 (134)
444 TIGR00414 serS seryl-tRNA synt 59.0 57 0.0012 31.6 8.6 55 120-174 44-102 (418)
445 PF12252 SidE: Dot/Icm substra 58.8 19 0.00041 39.6 5.6 14 161-174 1159-1172(1439)
446 KOG0979 Structural maintenance 58.8 48 0.001 36.2 8.5 86 87-172 133-226 (1072)
447 PF08961 DUF1875: Domain of un 58.7 3.2 6.9E-05 37.9 0.0 42 107-149 117-158 (243)
448 cd07666 BAR_SNX7 The Bin/Amphi 58.6 73 0.0016 29.1 8.7 22 152-173 174-195 (243)
449 PF05557 MAD: Mitotic checkpoi 58.3 56 0.0012 33.6 8.8 56 119-174 502-585 (722)
450 PF04420 CHD5: CHD5-like prote 58.2 37 0.0008 28.7 6.4 7 210-216 151-157 (161)
451 PF13514 AAA_27: AAA domain 58.2 65 0.0014 34.9 9.6 66 108-173 145-213 (1111)
452 PF10779 XhlA: Haemolysin XhlA 58.2 59 0.0013 23.8 6.7 43 132-174 4-46 (71)
453 PF10018 Med4: Vitamin-D-recep 58.2 1.1E+02 0.0024 26.3 9.4 35 139-173 27-61 (188)
454 PF10267 Tmemb_cc2: Predicted 58.1 51 0.0011 32.3 8.0 82 80-169 204-290 (395)
455 PF13747 DUF4164: Domain of un 58.1 85 0.0018 24.3 8.1 31 123-153 35-65 (89)
456 PF01166 TSC22: TSC-22/dip/bun 57.9 14 0.0003 27.2 3.2 30 140-169 13-42 (59)
457 PF05701 WEMBL: Weak chloropla 57.9 65 0.0014 32.1 9.0 46 128-173 289-334 (522)
458 COG1842 PspA Phage shock prote 57.8 90 0.002 28.1 9.1 55 112-166 84-138 (225)
459 TIGR01843 type_I_hlyD type I s 57.8 57 0.0012 30.0 8.1 12 89-100 92-103 (423)
460 PRK04863 mukB cell division pr 57.7 60 0.0013 36.8 9.4 9 89-97 311-319 (1486)
461 PF06705 SF-assemblin: SF-asse 57.7 97 0.0021 27.5 9.3 12 81-92 51-62 (247)
462 PRK12715 flgK flagellar hook-a 57.7 74 0.0016 32.9 9.5 75 89-164 108-182 (649)
463 PF07352 Phage_Mu_Gam: Bacteri 57.6 84 0.0018 25.9 8.3 53 115-173 5-57 (149)
464 COG4238 Murein lipoprotein [Ce 57.5 75 0.0016 24.5 7.2 44 123-166 28-71 (78)
465 PF07334 IFP_35_N: Interferon- 57.3 22 0.00047 27.3 4.3 15 132-146 5-19 (76)
466 PRK14160 heat shock protein Gr 57.2 67 0.0015 28.8 8.1 30 123-152 64-93 (211)
467 PF07558 Shugoshin_N: Shugoshi 57.2 11 0.00024 25.9 2.5 37 128-164 8-44 (46)
468 PF11180 DUF2968: Protein of u 57.1 1.2E+02 0.0026 27.0 9.5 32 144-175 150-181 (192)
469 PHA02557 22 prohead core prote 57.1 1.2E+02 0.0026 28.5 9.8 95 82-176 108-204 (271)
470 TIGR02680 conserved hypothetic 57.0 58 0.0013 36.3 9.1 19 84-102 236-254 (1353)
471 PF03980 Nnf1: Nnf1 ; InterPr 56.9 27 0.0006 27.2 5.0 13 90-102 32-44 (109)
472 COG5185 HEC1 Protein involved 56.8 49 0.0011 33.6 7.8 63 110-175 480-546 (622)
473 cd00890 Prefoldin Prefoldin is 56.7 48 0.001 25.8 6.4 33 124-156 91-123 (129)
474 PHA00489 scaffolding protein 56.7 52 0.0011 26.3 6.5 46 117-162 24-69 (101)
475 KOG4001 Axonemal dynein light 56.6 89 0.0019 28.6 8.7 22 153-174 233-254 (259)
476 PTZ00009 heat shock 70 kDa pro 56.5 1E+02 0.0023 31.4 10.3 17 114-130 540-556 (653)
477 PF10226 DUF2216: Uncharacteri 56.5 48 0.001 29.6 6.9 9 81-89 21-29 (195)
478 PF04065 Not3: Not1 N-terminal 56.3 49 0.0011 30.1 7.2 56 121-176 130-191 (233)
479 PF08657 DASH_Spc34: DASH comp 56.2 85 0.0018 28.9 8.8 60 115-174 175-258 (259)
480 PF04859 DUF641: Plant protein 56.2 47 0.001 27.8 6.5 20 152-171 98-117 (131)
481 PHA01750 hypothetical protein 56.1 88 0.0019 23.8 9.0 60 113-174 9-68 (75)
482 PF06160 EzrA: Septation ring 56.1 68 0.0015 32.2 8.8 83 88-177 354-436 (560)
483 PHA03011 hypothetical protein; 56.0 60 0.0013 26.5 6.9 54 119-172 38-95 (120)
484 PF04899 MbeD_MobD: MbeD/MobD 55.9 85 0.0018 23.6 8.6 39 138-176 25-63 (70)
485 PF15188 CCDC-167: Coiled-coil 55.9 61 0.0013 25.3 6.7 24 151-174 39-62 (85)
486 KOG3433 Protein involved in me 55.8 70 0.0015 28.7 7.8 21 145-165 120-140 (203)
487 PF08286 Spc24: Spc24 subunit 55.8 3.8 8.3E-05 32.8 0.0 40 124-163 3-42 (118)
488 PF02050 FliJ: Flagellar FliJ 55.7 81 0.0018 23.3 8.3 60 115-174 7-71 (123)
489 PF08702 Fib_alpha: Fibrinogen 55.7 93 0.002 26.1 8.3 50 120-169 82-132 (146)
490 PF03233 Cauli_AT: Aphid trans 55.6 1E+02 0.0022 26.9 8.6 74 90-167 85-161 (163)
491 PF09486 HrpB7: Bacterial type 55.4 87 0.0019 26.9 8.2 55 120-174 79-133 (158)
492 PF14584 DUF4446: Protein of u 55.3 66 0.0014 27.3 7.4 68 114-181 17-86 (151)
493 PF07407 Seadorna_VP6: Seadorn 55.3 55 0.0012 31.9 7.6 57 118-174 30-88 (420)
494 PF15369 KIAA1328: Uncharacter 55.3 79 0.0017 30.4 8.6 56 117-172 9-64 (328)
495 KOG4370 Ral-GTPase effector RL 55.3 40 0.00087 33.7 6.8 47 124-170 410-456 (514)
496 PF04871 Uso1_p115_C: Uso1 / p 55.2 91 0.002 25.8 8.1 51 120-170 27-77 (136)
497 COG1729 Uncharacterized protei 55.2 28 0.0006 32.3 5.5 89 114-205 50-138 (262)
498 PHA01750 hypothetical protein 55.0 92 0.002 23.7 7.2 55 113-167 20-75 (75)
499 KOG4673 Transcription factor T 54.9 61 0.0013 34.4 8.3 83 87-173 445-534 (961)
500 PF15397 DUF4618: Domain of un 54.8 56 0.0012 30.3 7.4 52 120-171 179-230 (258)
No 1
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.47 E-value=1.1e-13 Score=131.92 Aligned_cols=84 Identities=26% Similarity=0.427 Sum_probs=66.8
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCchhhHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGRP--PKTDKATILSDAVQMMEQLRTEAQK---LKQSNENLQEKIKELKAE 149 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~~--~K~dKasIL~dAIeYIk~Lq~qv~~---L~~e~~~L~~ei~eLk~E 149 (235)
++.+|+++|||||++||++|.+|+.|||.+.. .|.+|.+||..+++||+.||+..++ ++.....|+..+++|...
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~r 312 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALR 312 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHH
Confidence 56799999999999999999999999998743 5788999999999999999987663 333445566666666666
Q ss_pred HHHHHHHHH
Q 026646 150 KNELRDEKQ 158 (235)
Q Consensus 150 knELr~E~~ 158 (235)
+.||..+..
T Consensus 313 ieeLk~~~~ 321 (411)
T KOG1318|consen 313 IEELKSEAG 321 (411)
T ss_pred HHHHHHHHH
Confidence 666665443
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.47 E-value=6.3e-14 Score=97.68 Aligned_cols=51 Identities=37% Similarity=0.530 Sum_probs=47.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCchhhHHHHHHHHHHHHH
Q 026646 76 SGSKACREKLRRDRLNERFLELGSMLEPG---RPPKTDKATILSDAVQMMEQLR 126 (235)
Q Consensus 76 ~~sH~~~ERrRRekINd~F~eLrslLP~~---~~~K~dKasIL~dAIeYIk~Lq 126 (235)
+.+|+.+||+||++||+.|.+|+.+||.+ ...|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999986 4589999999999999999997
No 3
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.45 E-value=1.2e-13 Score=96.39 Aligned_cols=55 Identities=35% Similarity=0.437 Sum_probs=50.5
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGR-PPKTDKATILSDAVQMMEQLRTEA 129 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~-~~K~dKasIL~dAIeYIk~Lq~qv 129 (235)
.+.+|+.+||+||++||+.|.+|+++||... ..|++|++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567999999999999999999999999873 479999999999999999999875
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.43 E-value=3.7e-13 Score=92.38 Aligned_cols=51 Identities=39% Similarity=0.490 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHHH
Q 026646 80 ACREKLRRDRLNERFLELGSMLEPGR-PPKTDKATILSDAVQMMEQLRTEAQ 130 (235)
Q Consensus 80 ~~~ERrRRekINd~F~eLrslLP~~~-~~K~dKasIL~dAIeYIk~Lq~qv~ 130 (235)
+..||+||++||+.|..|+++||.+. ..|.+|++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999753 4899999999999999999998875
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.16 E-value=6.4e-11 Score=103.49 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=70.0
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGRP-----PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~~-----~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
++..|...||+||+.||.++..|..|||.+.+ .|+.||.||.++|+||.+|+.+..+-+++...|+.++..|+.=
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iI 141 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKII 141 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999997643 3999999999999999999999999999999988888777766
Q ss_pred HHHHH
Q 026646 150 KNELR 154 (235)
Q Consensus 150 knELr 154 (235)
+++..
T Consensus 142 k~~YE 146 (229)
T KOG1319|consen 142 KVNYE 146 (229)
T ss_pred HHHHH
Confidence 65544
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.93 E-value=7.2e-09 Score=92.83 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=68.0
Q ss_pred ccCcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026646 73 CCVSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTD-KATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKN 151 (235)
Q Consensus 73 ~~~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~d-KasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ekn 151 (235)
.+.+..|+.-||+||++|.+.|..|+.+||.+...+.. .++||.+|++||+.|+..........+.|..+-..|+.+.+
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ 136 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLE 136 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999998765555 69999999999999999888877777776666666665555
Q ss_pred HHH
Q 026646 152 ELR 154 (235)
Q Consensus 152 ELr 154 (235)
+|.
T Consensus 137 ql~ 139 (232)
T KOG2483|consen 137 QLS 139 (232)
T ss_pred Hhc
Confidence 544
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.66 E-value=1.5e-08 Score=91.60 Aligned_cols=58 Identities=33% Similarity=0.350 Sum_probs=50.9
Q ss_pred ccCcCcchHHHHHHHHHHHHHHHHHHhcCCCC------CCCCCchhhHHHHHHHHHHHHHHHHH
Q 026646 73 CCVSGSKACREKLRRDRLNERFLELGSMLEPG------RPPKTDKATILSDAVQMMEQLRTEAQ 130 (235)
Q Consensus 73 ~~~~~sH~~~ERrRRekINd~F~eLrslLP~~------~~~K~dKasIL~dAIeYIk~Lq~qv~ 130 (235)
+.++..|-..|||||++||..+.+|+.||+.. ...|++||.||+.|++|+++|+....
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 35677889999999999999999999999953 23799999999999999999998644
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.55 E-value=6.1e-08 Score=100.04 Aligned_cols=78 Identities=28% Similarity=0.364 Sum_probs=70.6
Q ss_pred ccCCcCCCCCccccCcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 026646 61 EAGSRKRLRSESCCVSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQ 140 (235)
Q Consensus 61 E~~~~KR~R~es~~~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~ 140 (235)
|+.+.||-+++ ..++.+||..|||-|..|||++.+|+.+||... .|..|.++|..||+||++|+...+.++.++..++
T Consensus 263 ek~Pi~rl~~G-~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~-aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 263 EKKPIKRLLPG-GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTE-AKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred ccCchhhcCCC-CcccchhhHHHHHhhcchhHHHHHHHHhcCccH-hhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 35677777775 468999999999999999999999999999764 8999999999999999999999999999998887
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.43 E-value=2.6e-07 Score=94.72 Aligned_cols=53 Identities=30% Similarity=0.419 Sum_probs=48.3
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCchhhHHHHHHHHHHHHHHH
Q 026646 76 SGSKACREKLRRDRLNERFLELGSMLEPGR--PPKTDKATILSDAVQMMEQLRTE 128 (235)
Q Consensus 76 ~~sH~~~ERrRRekINd~F~eLrslLP~~~--~~K~dKasIL~dAIeYIk~Lq~q 128 (235)
+.+|+..||||||++|-.|.||+++||.+. ..|+||.+||.+||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 567999999999999999999999999763 26999999999999999998875
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.31 E-value=5.8e-07 Score=83.64 Aligned_cols=69 Identities=25% Similarity=0.287 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 78 SKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 78 sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
--++.||||=.-||-+|..|++|||--...|.+||+||+.+.+||.+|.++--+|-..|.+|+..+.++
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~~E~ 131 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKRLKLEE 131 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHhhh
Confidence 356899999999999999999999976568999999999999999999998888877777766554443
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.79 E-value=6e-05 Score=68.83 Aligned_cols=61 Identities=25% Similarity=0.297 Sum_probs=49.0
Q ss_pred cCcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 026646 74 CVSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQ 134 (235)
Q Consensus 74 ~~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~ 134 (235)
.++..-..+||||=.|+|+.|..|+.---+.-+...-|+.||..||+||..||.-++++.+
T Consensus 117 DRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 117 DRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666899999999999999998754333237899999999999999999876665443
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.61 E-value=0.00015 Score=56.56 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCCCCC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026646 87 RDRLNERFLELGSMLEPGRP----PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEK 142 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~----~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~e 142 (235)
-|.||+.+..|+.+||..+. .|..-+-+|++|+.||+.|+.+|..|.+.+.+|...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999998543 466667799999999999999999999998888654
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.53 E-value=0.0001 Score=64.98 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=52.0
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGR--PPKTDKATILSDAVQMMEQLRTEAQKLKQ 134 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~--~~K~dKasIL~dAIeYIk~Lq~qv~~L~~ 134 (235)
.+..++.+||.|=..+|..|.+||.+||... ..|.+|+.+|.-||.||+.|+.-++.-+.
T Consensus 109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 109 QRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 4567778899999999999999999999764 47999999999999999999987665443
No 14
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=97.38 E-value=0.0017 Score=49.85 Aligned_cols=60 Identities=22% Similarity=0.488 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+..||+-|.=||-++++|+..|..|.+++..++....+|+.|+..||.|-...+.-|.++
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999998888877763
No 15
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.0033 Score=47.69 Aligned_cols=60 Identities=20% Similarity=0.495 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+..||+-|.=||-++++|++.|.+|.++..++......|+.|+..||.|-...+.-|+++
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999998888888764
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=97.21 E-value=0.0037 Score=47.00 Aligned_cols=53 Identities=34% Similarity=0.520 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
++.+.+|..+++.+-..+..|+.++.+|+.+.+.|.+++..|+.+.++|+++-
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555544443
No 17
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=97.09 E-value=0.00059 Score=67.43 Aligned_cols=68 Identities=32% Similarity=0.415 Sum_probs=49.8
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCC-C-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPG-R-PPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~-~-~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
++..++.|||.|=..||+.|.||..+.-.- + .....|..||..||..|-.|++||.+ ..|.-+...||
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE-----RNLNPKaaclk 595 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE-----RNLNPKAACLK 595 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH-----ccCChhhhhhh
Confidence 456677777777788999999999876421 0 13467899999999999999999865 23444455554
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.84 E-value=0.017 Score=43.40 Aligned_cols=57 Identities=28% Similarity=0.471 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+..||+-|.-|+.++++|+.+|..|.++...|+.+.+.|++|.......+..|=..|
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999887777777777777766665555554443333
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.62 E-value=0.014 Score=50.17 Aligned_cols=60 Identities=25% Similarity=0.503 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 115 LSDAVQMMEQLRTE---AQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 115 L~dAIeYIk~Lq~q---v~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|.+.|.|+..|+.. .+.+..+++.|+.++.+|+.+...|..|+..|+.++..++...++|
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999874 6777888888888888888888888888888888887777776663
No 20
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=96.43 E-value=0.021 Score=57.90 Aligned_cols=95 Identities=26% Similarity=0.396 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCCCCC---CCCC
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM---SAPSGFLPH---PSSM 187 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~---~~~p~~~p~---~~~~ 187 (235)
|+...-.-+.+|+.+.++|..+.+++..+|++||+++..-+.|..+||.+||.-|.+++.+ +.|--|+|- |..+
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~ 166 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQI 166 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccC
Confidence 4555556688899999999999999999999999999999999999999999999999885 334445554 3344
Q ss_pred chhhhhhhhhcCCccccccCC
Q 026646 188 SAAFAAQSQVAGNKLVPFIGY 208 (235)
Q Consensus 188 p~~~~~~~qa~~~k~~p~~~~ 208 (235)
|+.--++.|+.+..|--...|
T Consensus 167 pr~l~pp~~~~~c~lhncfdy 187 (907)
T KOG2264|consen 167 PRELEPPSQISPCQLHNCFDY 187 (907)
T ss_pred cccCCCccccCcccchhcccc
Confidence 544445556666655433344
No 21
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.95 E-value=0.12 Score=47.52 Aligned_cols=85 Identities=24% Similarity=0.340 Sum_probs=63.1
Q ss_pred ch-HHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 79 KA-CREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 79 H~-~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
|. .-||.-|.||++|..+=- ....|-+-..+-=..|++|..+.+.|..+|+.|+...+.|-.+.+||+.+.
T Consensus 63 HLS~EEK~~RrKLKNRVAAQt--------aRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~l 134 (292)
T KOG4005|consen 63 HLSWEEKVQRRKLKNRVAAQT--------ARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSEL 134 (292)
T ss_pred ccCHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44 578888889998876532 223344444444556888999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 026646 158 QRLKADKEKLEQQV 171 (235)
Q Consensus 158 ~~Lk~e~e~le~ql 171 (235)
..|+.++-.+.+|-
T Consensus 135 e~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 135 ELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHhhHHHH
Confidence 88888877776653
No 22
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.75 E-value=0.092 Score=40.45 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQR-------LKADKEKLEQQVKAM 174 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~-------Lk~e~e~le~qlk~~ 174 (235)
.+.+.+|...|+..-.++.-|+.+|++||.+.+.|.+|... |..+.+.|+++-.++
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999888888888766 555666666555543
No 23
>smart00338 BRLZ basic region leucin zipper.
Probab=95.62 E-value=0.044 Score=39.36 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
--.||..|+.+++.|+.+|..|..++..|..+...|++++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458888888888888888888877777777666666543
No 24
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=95.51 E-value=0.057 Score=38.72 Aligned_cols=35 Identities=31% Similarity=0.593 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
.||.+|+.++..|+.+|..|..++..|+.+...|.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544444444433333
No 25
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.37 E-value=0.11 Score=41.85 Aligned_cols=51 Identities=29% Similarity=0.481 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
|=.++..|++....|..++.+||....+|-+||+.|+-|.+.|...|....
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566666666666666666666777777777777766666543
No 26
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.21 E-value=0.27 Score=48.75 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
-+.+-|....+|+++++.|+.+.+.+.+...++......|++|+..|+.|++++..
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34445556677777777777777777777777777778888888888888887544
No 27
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.97 E-value=0.016 Score=49.86 Aligned_cols=53 Identities=25% Similarity=0.250 Sum_probs=46.6
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRT 127 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~ 127 (235)
.+.-|+++||+|=-.||+.|..|+.++|..-..|.+|.--|.-|.+||-.|-+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 34579999999999999999999999996544799999999999999998764
No 28
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.77 E-value=0.24 Score=40.56 Aligned_cols=50 Identities=36% Similarity=0.625 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
.+..|.+|+.++..++.++..|+.++..|..+++++++|..+|-.+.+.+
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777766655555544
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.72 E-value=0.2 Score=40.55 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|=.++..|++....+..++.+||....+|-+||+.|+.|.+.|...|..+
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666666677777777777777776666654
No 30
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=94.69 E-value=0.22 Score=41.89 Aligned_cols=66 Identities=24% Similarity=0.457 Sum_probs=52.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEK--NELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ek--nELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
++..+-.-..+ |.+|+.++..|+.++..|+.++..|.... .+|+.+...|+.+++.++..|..+..
T Consensus 70 s~eel~~ld~e-i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAE-IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33343333444 88899999999999999998888888876 58899999999999999999998755
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.61 E-value=0.23 Score=44.02 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 84 KLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKAD 163 (235)
Q Consensus 84 RrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e 163 (235)
|.|=.++...+.+|++-+-.. -...-+...+|++.++..++...+|+++.+.|+.+..+++.|+..|+++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~----------~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNI----------DNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467778888888666432 1222244444444444444444444444444444444444444444455
Q ss_pred HHHHHHHH
Q 026646 164 KEKLEQQV 171 (235)
Q Consensus 164 ~e~le~ql 171 (235)
++.++..+
T Consensus 162 ~~~~~~~~ 169 (206)
T PRK10884 162 LDDKQRTI 169 (206)
T ss_pred HHHHHHHH
Confidence 44444443
No 32
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.13 E-value=0.83 Score=42.47 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhc
Q 026646 87 RDRLNERFLELGSM 100 (235)
Q Consensus 87 RekINd~F~eLrsl 100 (235)
...|...+..|+++
T Consensus 186 ~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 186 KAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444443
No 33
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=94.09 E-value=0.037 Score=56.98 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=66.6
Q ss_pred cCcCcchHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026646 74 CVSGSKACREKLRRDRLNERFLELGSMLEPGR---PPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEK 150 (235)
Q Consensus 74 ~~~~sH~~~ERrRRekINd~F~eLrslLP~~~---~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ek 150 (235)
.+..+|...|.+||+.|.-.|..|.+++-..- ..|+.+..-+..+++||..++.+...+.+|-..|+.++.+|++-+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~~ 729 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAVI 729 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHHH
Confidence 57889999999999999999999998885321 258888888999999999999988888888888887777776665
Q ss_pred HHHH
Q 026646 151 NELR 154 (235)
Q Consensus 151 nELr 154 (235)
+-++
T Consensus 730 ~~~~ 733 (856)
T KOG3582|consen 730 SACQ 733 (856)
T ss_pred HHhh
Confidence 5444
No 34
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=94.03 E-value=0.51 Score=35.42 Aligned_cols=60 Identities=30% Similarity=0.484 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|..-=+-|.+|+.+-+.|....-.+.+.|+.|+....++..+...|+..++.++.++..+
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446788999999999988888888899998888888888888888888888877664
No 35
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.01 E-value=0.27 Score=45.45 Aligned_cols=59 Identities=24% Similarity=0.415 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+.|..+-.-.+.++.+++.|....+.++.++.+++.+.+++..|...|+.+|+.++..|
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555544444444444444433
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.95 E-value=0.77 Score=43.03 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhcC
Q 026646 87 RDRLNERFLELGSML 101 (235)
Q Consensus 87 RekINd~F~eLrslL 101 (235)
.+.|+..+..|+.+.
T Consensus 181 ~~~L~~e~~~L~~~~ 195 (312)
T smart00787 181 KDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHhH
Confidence 334444444444433
No 37
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.77 E-value=0.5 Score=43.29 Aligned_cols=52 Identities=29% Similarity=0.585 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.+++...+++.++++.|..+..+|..+.++++++..+|..|+.+|+..++.+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556667777888888888888888888888888888888888777764
No 38
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.67 E-value=0.49 Score=46.87 Aligned_cols=60 Identities=27% Similarity=0.431 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKA----------------------EKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~----------------------EknELr~E~~~Lk~e~e~le~qlk 172 (235)
|..-|--+++|+.+++.|..+|+.|+.+.+.|++ +...|.+|.+.|...+..|+.||+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555666777766666666666655555544 444455555555555666666665
Q ss_pred hc
Q 026646 173 AM 174 (235)
Q Consensus 173 ~~ 174 (235)
.+
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
Confidence 43
No 39
>PRK11637 AmiB activator; Provisional
Probab=93.62 E-value=0.89 Score=43.49 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-+.++...|..|..++..+..+...++.+|..+..+..+++.+...++.+++..+.+|+.
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566666666666666666666666666666666666666655555
No 40
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=93.59 E-value=0.58 Score=37.95 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
.+-|.+|.+++..|-.+...|+..+.+|-.|...|+-||..|+..+..+++
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345777888899999999999999999988888999999999988888744
No 41
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.56 E-value=0.56 Score=37.68 Aligned_cols=51 Identities=31% Similarity=0.470 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
.+-|.+|.+++..|-.+...|+..+.+|-.|..+|+-||..|+..+..+++
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778889999999999999999999999999999999999998888877
No 42
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.50 E-value=0.63 Score=39.37 Aligned_cols=72 Identities=26% Similarity=0.481 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSGFLPHPSS 186 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~~~p~~~~ 186 (235)
.+.++.-+..++.....+..++..+..++.........+|++...++.+.+++..+...+...-|.+..|..
T Consensus 72 ~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~l 143 (177)
T PF13870_consen 72 IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Confidence 455677777777788888888888999999999999999999999999999999999998777776666543
No 43
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.47 E-value=0.75 Score=34.19 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
|.+|-...++|+.+|..|.++...+..|...|.+.+..-++.+|.+=..|++|-
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 344445555666666666666666666666666666666666666666666553
No 44
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.40 E-value=0.66 Score=35.35 Aligned_cols=51 Identities=31% Similarity=0.448 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
.+.+.+|...++.--....-|+.+|++||.++|.|..|.+.+....+.|+.
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 456777888888777777778888888877777777776655554444443
No 45
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.39 E-value=0.078 Score=53.50 Aligned_cols=61 Identities=33% Similarity=0.327 Sum_probs=44.3
Q ss_pred CCcCCCCCccccCc----CcchHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCchhhHHHHHHHHHH
Q 026646 63 GSRKRLRSESCCVS----GSKACREKLRRDRLNERFLELGSMLEPGRP--PKTDKATILSDAVQMME 123 (235)
Q Consensus 63 ~~~KR~R~es~~~~----~sH~~~ERrRRekINd~F~eLrslLP~~~~--~K~dKasIL~dAIeYIk 123 (235)
.+|||.|+...-+. .++.-=-||-||+||--+.-|.+|||--.. .|.||.|||.=+|.|++
T Consensus 9 AsrkRrrp~qk~rpp~~a~tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 9 ASRKRRRPLQKQRPPPKALTKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhhhccCCccccCCCccccccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 45666665432111 233334578899999999999999993211 79999999999999986
No 46
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=0.68 Score=42.82 Aligned_cols=61 Identities=21% Similarity=0.454 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
+...=.-|..|+.+.+.++.+++.|..+|.++..+.++++.++..+++++++++.+|+.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667888888888999999999999999989999999999999999999999988864
No 47
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=93.12 E-value=0.39 Score=43.68 Aligned_cols=52 Identities=23% Similarity=0.484 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
+..|.++++..|.+|++++..+..++..|+.|...|+++..+|-.+++=+.+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5568888888888888888888889999999999999999999999998754
No 48
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=92.80 E-value=1 Score=32.14 Aligned_cols=36 Identities=36% Similarity=0.587 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 136 NENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 136 ~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
.+.|+.++..|..+...|+.++..|+.++..|..++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444455555555555555555555555555443
No 49
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.74 E-value=0.75 Score=39.74 Aligned_cols=57 Identities=26% Similarity=0.376 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
....-...|+.+.+.|+.++.+|+++++.|..|..+|..+...++.+-+-|-..|..
T Consensus 94 ~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 94 TTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456678888888888888888888888888888888888887777777666553
No 50
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.72 E-value=0.5 Score=32.52 Aligned_cols=40 Identities=28% Similarity=0.555 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
|+...+.|...-..|+.+..-|..|+..|++++..|...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444445555555555555554433
No 51
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=92.60 E-value=0.54 Score=38.11 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
+|-.||-+|+..++.|.+.+..+|.|.-.||.||+.|-+=|+.|
T Consensus 60 RlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 60 RLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 34446666777777777777777777778888888887766654
No 52
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=92.60 E-value=0.94 Score=36.34 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
-+++=+|+|+-..|+ .|...+..|+++++.+..+..+|+.+...++.++..+..++
T Consensus 62 rLaQl~ieYLl~~q~---~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 62 RLAQLSIEYLLHCQE---YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346668888876665 34444555566666666666666666666666666665554
No 53
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.56 E-value=1.1 Score=38.72 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 85 LRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 85 rRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
+.|..+..++..+..-+-.. -..+..--.-|..|+.++..|+.++..|..++++...-...|+||...|..+.
T Consensus 88 r~~~el~~~L~~~~~~l~~l-------~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 88 RSKGELAQQLVELNDELQEL-------EKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544211 12233334456667777777777777777777777777777777777777777
Q ss_pred HHHHHHHHh
Q 026646 165 EKLEQQVKA 173 (235)
Q Consensus 165 e~le~qlk~ 173 (235)
.-++.++..
T Consensus 161 ~~~e~k~~~ 169 (194)
T PF08614_consen 161 NMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666654
No 54
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.39 E-value=0.79 Score=45.50 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
|...=.-..+|+++++.|+.+.+.+..+.+++..++++|.+|+..|+.+++.+-.++..
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~ 129 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVT 129 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 44555566778888888888887777777788888889999999999998766666443
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.36 E-value=1.2 Score=39.43 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=10.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRL 160 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~L 160 (235)
|+++|++|++++..++.+...|+.++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 56
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.26 E-value=1.3 Score=33.04 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEK-------NELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~Ek-------nELr~E~~~Lk~e~e~le~qlk~ 173 (235)
|..||.....+...++..+..++.|..|. .....++..|+.|++.|..+|+.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444443 34455677777777777777664
No 57
>PRK02119 hypothetical protein; Provisional
Probab=92.10 E-value=2.3 Score=31.87 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
+..+..++..|+....-+...|.+|....-+-+.+...|+.++..|.++|+.+.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667777777777777777777777777777777888888888888888765
No 58
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=91.95 E-value=2.1 Score=36.04 Aligned_cols=53 Identities=23% Similarity=0.418 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..+|.++++ .+|+.++..|.++++.|+.|...++-|...++...++|..-.-+
T Consensus 68 CR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~~ 120 (135)
T KOG4196|consen 68 CRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAVS 120 (135)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345666643 56888888888888888888888888888888887777766543
No 59
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.94 E-value=0.74 Score=42.97 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026646 155 DEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 155 ~E~~~Lk~e~e~le~qlk~ 173 (235)
+|...|+++++....+|..
T Consensus 113 ~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666555
No 60
>PRK04406 hypothetical protein; Provisional
Probab=91.84 E-value=2.6 Score=31.84 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
.|..++..|+....-+...|++|....-+...+...|+.++..|..+|+.+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667777777777777777777777777777777888888888888888765
No 61
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=91.84 E-value=3 Score=30.99 Aligned_cols=53 Identities=26% Similarity=0.435 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
++.|..++..|-...++|+.+...|+.+...++.|...|....+--.+.|++|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888888888888776
No 62
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.51 E-value=1.7 Score=32.37 Aligned_cols=54 Identities=17% Similarity=0.358 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
..+.+-+...+.....|..++......+...-.+.++|++|+..|+.|++.+..
T Consensus 15 d~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 15 DSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555556666666777766667777777888888888888888776543
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.47 E-value=1.1 Score=41.64 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=2.6
Q ss_pred HHHhcCC
Q 026646 96 ELGSMLE 102 (235)
Q Consensus 96 eLrslLP 102 (235)
.|..++|
T Consensus 174 ~l~~~~~ 180 (325)
T PF08317_consen 174 QLDELLP 180 (325)
T ss_pred HHHHHHH
Confidence 3333333
No 64
>PRK11637 AmiB activator; Provisional
Probab=91.46 E-value=1.4 Score=42.13 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 142 KIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 142 ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+|..+..+++++..+...+..++..++.+|.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444
No 65
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.43 E-value=2.2 Score=46.61 Aligned_cols=85 Identities=24% Similarity=0.404 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKA-TILSDAVQMMEQLRTEAQKLKQS----------NENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKa-sIL~dAIeYIk~Lq~qv~~L~~e----------~~~L~~ei~eLk~EknELr~E~ 157 (235)
.+++++.+|+..+|.... ...|. +=+...+.-|..|..++.+++.. ...+++.|.+++.|.+++.++.
T Consensus 803 ~~ee~~~~lr~~~~~l~~-~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~ 881 (1293)
T KOG0996|consen 803 ELEERVRKLRERIPELEN-RLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKA 881 (1293)
T ss_pred HHHHHHHHHHHhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366777778877775421 11221 11344555666666666666643 2345566888888888887554
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 026646 158 QRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 158 ~~Lk~e~e~le~qlk~~~ 175 (235)
.. |++++.|+.++..++
T Consensus 882 ~K-k~~i~~lq~~i~~i~ 898 (1293)
T KOG0996|consen 882 AK-KARIKELQNKIDEIG 898 (1293)
T ss_pred hH-HHHHHHHHHHHHHhh
Confidence 45 788888877776653
No 66
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.38 E-value=0.88 Score=41.76 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
+.+++.+...|.++++.|+.+.+++..+...|+-|+++|.....+|.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 33444444445555555544444444444444444444444433333
No 67
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=91.16 E-value=0.37 Score=41.70 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026646 151 NELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~le~q 170 (235)
..|+.++++||-|+-.|.++
T Consensus 27 E~L~~~~QRLkDE~RDLKqE 46 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQE 46 (166)
T ss_dssp HHHHHCH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 68
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.03 E-value=2 Score=37.69 Aligned_cols=60 Identities=20% Similarity=0.417 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.|..+=++.|+.|+.++..++..-......+.++..|...|.+-...+..+++.|+.+|+
T Consensus 20 dIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 20 DITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 466677788888888887777554444444444444444444444444444444444443
No 69
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.92 E-value=2.5 Score=36.02 Aligned_cols=17 Identities=41% Similarity=0.688 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026646 154 RDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 154 r~E~~~Lk~e~e~le~q 170 (235)
+.+...|+.|+++|+++
T Consensus 79 r~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 79 RSENEKLQREIEKLRQE 95 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 70
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.75 E-value=1.4 Score=39.24 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026646 152 ELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+......++.+++.|++++..
T Consensus 74 ~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 74 QLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.62 E-value=2.5 Score=40.99 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 86 RRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 86 RRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
++..+..++.+|+..+-.. -+-|...++-+..|+.++++|+.....+..+++.|..+.+++..++..+..++.
T Consensus 331 ~~~~~~~~i~el~~~i~~~-------~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 331 EFNEQSKKLLELKNKISTN-------KQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677776666422 122677888888899999999888888888888888888888888877777766
Q ss_pred HHHH
Q 026646 166 KLEQ 169 (235)
Q Consensus 166 ~le~ 169 (235)
..+.
T Consensus 404 ~~~~ 407 (562)
T PHA02562 404 HRGI 407 (562)
T ss_pred HHHH
Confidence 6533
No 72
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.54 E-value=3.8 Score=31.57 Aligned_cols=43 Identities=26% Similarity=0.447 Sum_probs=22.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 131 KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+|..+...||..+..|.....+.++|+..|++|.+-|+.=|..
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555555
No 73
>PRK00846 hypothetical protein; Provisional
Probab=90.46 E-value=3.7 Score=31.41 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
.|..++..|+....-....|++|....-+...+...|+.++..|..+|+.+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666677666666666777777777777777788888888888888864
No 74
>smart00338 BRLZ basic region leucin zipper.
Probab=90.37 E-value=2.9 Score=29.81 Aligned_cols=35 Identities=37% Similarity=0.673 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
..|+.++..|..+..+|+.+...|..++..|.+++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444445544444443
No 75
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=90.34 E-value=5.1 Score=36.69 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
.+++.++..|+.+|+.|+.++.+|++|...|+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554444444
No 76
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=90.30 E-value=0.8 Score=31.90 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
.+.+.+|..+..+|..++..|..++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555555555544
No 77
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.27 E-value=1.1 Score=30.88 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 141 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 141 ~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..-..|+...+.|+.++.+|+.|+++|..++..
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555444444443
No 78
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=90.24 E-value=2.6 Score=31.17 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.+.+...+..+...++.+++.++.+.++|+.|...|.. .++++..-+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar 68 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 44556666666777777777777777777777776644 566665544
No 79
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.17 E-value=1.8 Score=35.46 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+-.++..|++....|..++..||+...+|-+||..|+-|.++|..-|..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34456777788778888888888888889999999999999998887764
No 80
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.12 E-value=4.3 Score=38.51 Aligned_cols=64 Identities=25% Similarity=0.396 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhc--------CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026646 86 RRDRLNERFLELGSM--------LEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEK 150 (235)
Q Consensus 86 RRekINd~F~eLrsl--------LP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ek 150 (235)
|...++....+|--. +++.. .+.+=+.+|.++-+-.+.|+.++..|++....++-+++.|+...
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~-~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~l 109 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEK-ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKL 109 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 456666666666521 11121 33445677899999999999988888877666665555555533
No 81
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.10 E-value=2 Score=39.19 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=52.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
.+-.+||.-.+.-=-+.++++.+|++++.++.+++..|+.|.+.|+.+|..|-..+--|+.
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788877777778899999999999999999999999999999999999777766654
No 82
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=90.10 E-value=1 Score=32.13 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
|..|+.-+.+|+.+.+.-..+......++.+|+.||..|++++++++
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666677776655444556677888889999999999888765
No 83
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=90.03 E-value=1.6 Score=37.88 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026646 156 EKQRLKADKEKLEQQVK 172 (235)
Q Consensus 156 E~~~Lk~e~e~le~qlk 172 (235)
|...||.+...|.++|+
T Consensus 171 ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 171 EIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444555555555544
No 84
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.02 E-value=1.6 Score=41.94 Aligned_cols=29 Identities=48% Similarity=0.538 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 145 ELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 145 eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.|+.-.+||+.-++.|+.++++||+|+..
T Consensus 236 slkRt~EeL~~G~~kL~~~~etLEqq~~~ 264 (365)
T KOG2391|consen 236 SLKRTEEELNIGKQKLVAMKETLEQQLQS 264 (365)
T ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444333
No 85
>PRK04325 hypothetical protein; Provisional
Probab=89.96 E-value=4.5 Score=30.37 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
..+..++.+|+....-++..|++|....-+-..+...|+.++..|..+|+.+.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666666666666666666677777777777777777765
No 86
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.89 E-value=0.27 Score=48.41 Aligned_cols=46 Identities=26% Similarity=0.435 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC--CCCchhhHHHHHHHHHHHHHH
Q 026646 81 CREKLRRDRLNERFLELGSMLEPGRP--PKTDKATILSDAVQMMEQLRT 127 (235)
Q Consensus 81 ~~ERrRRekINd~F~eLrslLP~~~~--~K~dKasIL~dAIeYIk~Lq~ 127 (235)
-.-|.||++-|--|.+|..+||-.+. ...||++|+.=|..||| |+.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlK-mr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLK-MRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHH-HHH
Confidence 35689999999999999999996432 56999999999999998 443
No 87
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.82 E-value=2.8 Score=37.84 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L 139 (235)
.+|.+++.+.+.|..|...+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h 51 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAH 51 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 88
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.80 E-value=2.2 Score=31.34 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
|..++.+|+....-+...|++|....-+...+...|+.++..|..+|+.+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666666666666677777777777777777765
No 89
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=89.71 E-value=1.4 Score=40.74 Aligned_cols=58 Identities=14% Similarity=0.372 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCC
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS-APSGFLP 182 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~-~~p~~~p 182 (235)
|+..++.+..+.++++..+..|..+...|.....+-++|+||.+..|+++. +.|.||.
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmd 225 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMD 225 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 444455555566666666666666767777777777888888888888874 4676664
No 90
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=89.62 E-value=2.4 Score=41.61 Aligned_cols=84 Identities=19% Similarity=0.268 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHH---------------HHHHHHHhHHHHHHHHHHHHHHHH
Q 026646 88 DRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTE---------------AQKLKQSNENLQEKIKELKAEKNE 152 (235)
Q Consensus 88 ekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~q---------------v~~L~~e~~~L~~ei~eLk~EknE 152 (235)
..|.+.+.+|..-+-.. .++...+...+.+|..+... +.++.+-...+.+++.++..+..+
T Consensus 74 ~~l~~~l~~l~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 74 AELRKQIRELEAELRDL----EDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544322 34566666666666666531 233444444445555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 026646 153 LRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
|..+...|+.++.+|+.+|..++
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666666666666666666543
No 91
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.60 E-value=1.2 Score=37.39 Aligned_cols=53 Identities=26% Similarity=0.528 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK--QRLKADKEKLEQQVKAM 174 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~--~~Lk~e~e~le~qlk~~ 174 (235)
+..|..++..|+.++..|..+++.|+.|...|..+. ..|..+++.|+.+++.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEEL 128 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555554433 35555566666655554
No 92
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=89.55 E-value=1.8 Score=36.58 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNE 137 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~ 137 (235)
....-.++|+.|+.+|++|..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELN 57 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 344445556666666665554
No 93
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.30 E-value=0.3 Score=50.42 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CCCCCchhhHHHHHHHHHHHHHH
Q 026646 81 CREKLRRDRLNERFLELGSMLEPG--RPPKTDKATILSDAVQMMEQLRT 127 (235)
Q Consensus 81 ~~ERrRRekINd~F~eLrslLP~~--~~~K~dKasIL~dAIeYIk~Lq~ 127 (235)
-+-|-||.|=|+-|.+|..+||-- -....|||+|+.=||.|++ |+.
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR-lrk 99 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR-LRK 99 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH-HHH
Confidence 466889999999999999999931 1268999999999999998 554
No 94
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=89.25 E-value=1.8 Score=31.15 Aligned_cols=43 Identities=40% Similarity=0.600 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 130 QKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
..++.+...|+.+++.++.+..+|+.+...|+.+.+.++..-+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3344444444444444555555555555555445555555544
No 95
>PRK00295 hypothetical protein; Provisional
Probab=89.24 E-value=5 Score=29.63 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
+..++.+|+....-+...|++|....-+...+...|+.++..|..+|+.+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555556655555666666666777777777777764
No 96
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=89.19 E-value=5 Score=36.21 Aligned_cols=93 Identities=28% Similarity=0.294 Sum_probs=62.1
Q ss_pred CcchHHHHHHHHHHHH----HHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026646 77 GSKACREKLRRDRLNE----RFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNE 152 (235)
Q Consensus 77 ~sH~~~ERrRRekINd----~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknE 152 (235)
.-|...++..+.+=|+ .-..|+..+... .| ..+=..+..+=+..|+.+.++.+.+.+.++.+...|++...+
T Consensus 115 R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~--~~--~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 115 RLHTLLRELATLRANEKAMKENEALKKQLENS--SK--LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcc--cc--hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544322 222444444321 12 344445566667778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026646 153 LRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk~ 173 (235)
+.+|-.+|..|-.+|+.|+..
T Consensus 191 ~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 191 LQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred cccHHHHHHHHHHHHHHHHhc
Confidence 888888888888888888864
No 97
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.17 E-value=1.6 Score=42.05 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 141 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 141 ~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
.+++.|+.+..++.++...++.++++++.+|+.+.++|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPL 67 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 334444444444555555556666777777777777664
No 98
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=89.09 E-value=3.2 Score=32.18 Aligned_cols=51 Identities=31% Similarity=0.546 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKA---EKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~---EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+.|+.+++.|..+...+..+|..++. +..+|..+...++.++..++.+++.
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666566666655554 2345555666666666666655554
No 99
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=88.99 E-value=0.27 Score=44.77 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=45.0
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCchhhHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPG-RPPKTDKATILSDAVQMMEQLRT 127 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~-~~~K~dKasIL~dAIeYIk~Lq~ 127 (235)
++.+=|.+||.|=-.||+.|..||.+||.. ...|..|.-.|.-|-.||..|.+
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 456667899999999999999999999953 34899999999888888887764
No 100
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.95 E-value=5.3 Score=32.77 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
.-++++..=-.-|+++..++..|+.++..|..+-+.+..|+-.|..++
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666665555555444444444444433
No 101
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.90 E-value=4.4 Score=29.41 Aligned_cols=40 Identities=23% Similarity=0.469 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
|.+|-.+|+.|.....+|.+++..|+.+.....+|-.+-.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN 44 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544444444433
No 102
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=88.81 E-value=2 Score=39.33 Aligned_cols=55 Identities=20% Similarity=0.400 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+|....++.+..++.+..+-+....++...+.+|..||..|+.+++.|++++..+
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4655555555556655555555555566666666666666666666666666553
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.80 E-value=4.3 Score=34.21 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
++..|.+++..++.+.+.|+.|...++.+++.|.++++.
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555554443
No 104
>PRK02793 phi X174 lysis protein; Provisional
Probab=88.75 E-value=6.5 Score=29.33 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
+..++.+|+....-+...|.+|....-+.+.+...|..++..|..+|+.+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556666666666666666666766666667777777777888888887764
No 105
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.72 E-value=2.1 Score=33.92 Aligned_cols=52 Identities=25% Similarity=0.396 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 122 MEQLRTEAQKLKQSNENL--QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L--~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..+..+++.++.+.+.| ..++..|+.+..+++-+...+..+++.+.+++.-
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666 6667777777777777777777777777666553
No 106
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=88.62 E-value=0.77 Score=42.54 Aligned_cols=52 Identities=25% Similarity=0.226 Sum_probs=44.1
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCchhhHHHHHHHHHHHHHH
Q 026646 76 SGSKACREKLRRDRLNERFLELGSMLEPGRP-PKTDKATILSDAVQMMEQLRT 127 (235)
Q Consensus 76 ~~sH~~~ERrRRekINd~F~eLrslLP~~~~-~K~dKasIL~dAIeYIk~Lq~ 127 (235)
+..-+.+||+|=..||..|..|+.+||.+.. .|.+|-..|..|-.||--|-.
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~ 227 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGC 227 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHH
Confidence 4455689999999999999999999997543 688999999999999986653
No 107
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.54 E-value=3.9 Score=32.46 Aligned_cols=54 Identities=19% Similarity=0.387 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKEL--KAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eL--k~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
+..|++++...+.....++++++.| +.+.+.|+-+...++-++..++.+|+.++
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445555555566666666666666 66666677777777777777777776553
No 108
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=88.51 E-value=2.9 Score=38.45 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 130 QKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+|++||++|++++.+|+.+.+.+ .+.|+.|.++|+..|..
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~---~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEIL---TQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC
Confidence 345566666666655553333322 22255666666665554
No 109
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=88.47 E-value=3.7 Score=31.01 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
+++...++.+|+.+|=.|.-+|..|..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee 28 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEE 28 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345556666666666555555544443
No 110
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.41 E-value=3.3 Score=31.92 Aligned_cols=49 Identities=29% Similarity=0.394 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
=.+|.+++..|+..+..|-..|..++.|-..|+.||..|..=|..|=..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888999999999999999999999999999999999888887444
No 111
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.33 E-value=4.2 Score=35.39 Aligned_cols=62 Identities=23% Similarity=0.414 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..=|..++..+.+=+++...|.+-|.-|+++.+..+.....|.+++.+|..+-+++..+|..
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888889999999999998888888888898888888888887777654
No 112
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=88.27 E-value=3.5 Score=35.23 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
.++++.|+.|..+...|...||.+.+.++
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 113
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=88.23 E-value=2.6 Score=37.83 Aligned_cols=39 Identities=28% Similarity=0.549 Sum_probs=19.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 131 KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+|.++|++|++++.+|+.+..+++ .|+.|.++|...|..
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~----~l~~en~~L~~lL~~ 111 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELE----QLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 444444444444444444443321 455666666666654
No 114
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.20 E-value=3.4 Score=36.67 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=29.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 130 QKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
..|...+..+..+...|..+...|.+||..|..+.+.++.+.+.++.
T Consensus 84 ~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 84 RSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 33334444445555666667777777777777777777777666543
No 115
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.12 E-value=2.7 Score=30.22 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
+.+++++++.|+.++++++.+++.|+.++..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666666666666666
No 116
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.96 E-value=2.3 Score=40.92 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCCCCCC
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA--PSGFLPHPSSM 187 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~--~p~~~p~~~~~ 187 (235)
+|+.++=..+.+|..-+..++++|..|+.++++++.|.+|-.+|.+.|..|....-.-...++. +..|.+.+..+
T Consensus 120 ~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml 196 (401)
T PF06785_consen 120 EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSML 196 (401)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhh
Confidence 4566666677788888889999999999999999999999999999887776553333333332 34566665544
No 117
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=87.94 E-value=4.2 Score=38.78 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDE 156 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E 156 (235)
+|.-+++-+..|+.++..|..+++.|++++..+..+..++-.+
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~ 173 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNA 173 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777666666666655555555444433
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.87 E-value=5 Score=39.45 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 156 EKQRLKADKEKLEQQ 170 (235)
Q Consensus 156 E~~~Lk~e~e~le~q 170 (235)
.+..+...++.|+.|
T Consensus 95 ~I~~~~~~l~~l~~q 109 (420)
T COG4942 95 QIADLNARLNALEVQ 109 (420)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333333333444333
No 119
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.82 E-value=4.3 Score=41.37 Aligned_cols=60 Identities=28% Similarity=0.436 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
....-.-+.+|+.+++.|..+.+.+..+++.++.+..++.+|....+.+.++++.+++..
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888999999999999999999999999999999999999999999999998864
No 120
>PRK09039 hypothetical protein; Validated
Probab=87.78 E-value=3.9 Score=38.60 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
++..++-.-|..|++|++.|+.++..|+..|..++.+..+.+.....|+.+++..
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777788888887777777777666666555555555554444443
No 121
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.53 E-value=4.7 Score=37.68 Aligned_cols=6 Identities=50% Similarity=0.291 Sum_probs=2.4
Q ss_pred hhhhhh
Q 026646 192 AAQSQV 197 (235)
Q Consensus 192 ~~~~qa 197 (235)
||-||+
T Consensus 173 AA~Gq~ 178 (314)
T PF04111_consen 173 AAWGQT 178 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 122
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.51 E-value=10 Score=31.14 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 026646 89 RLNERFLELG 98 (235)
Q Consensus 89 kINd~F~eLr 98 (235)
-||..+..++
T Consensus 6 yiN~~L~s~G 15 (151)
T PF11559_consen 6 YINQQLLSRG 15 (151)
T ss_pred HHHHHHHHCC
Confidence 3555555433
No 123
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.20 E-value=4.6 Score=35.58 Aligned_cols=12 Identities=17% Similarity=0.280 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 026646 162 ADKEKLEQQVKA 173 (235)
Q Consensus 162 ~e~e~le~qlk~ 173 (235)
.++...+.++..
T Consensus 126 ~~~~~~~~~l~~ 137 (302)
T PF10186_consen 126 NELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 124
>PRK00736 hypothetical protein; Provisional
Probab=87.07 E-value=8.6 Score=28.37 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
.++..|+....-+...|++|....-+-..+...|..++..|..+|+.+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444455544444555555666666666666666653
No 125
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=86.91 E-value=6.2 Score=33.23 Aligned_cols=30 Identities=33% Similarity=0.621 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 144 KELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 144 ~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+|..++.+|..|...|+.|+.++..++.+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444
No 126
>PHA03011 hypothetical protein; Provisional
Probab=86.90 E-value=7.2 Score=31.80 Aligned_cols=60 Identities=18% Similarity=0.385 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
...-++-+.+|..+-..|-++..-+..+++.+..=..+-.+|.-.|++|++||..++-.+
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 344567777888888888888888888888888888888888889999999998887543
No 127
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.88 E-value=4 Score=39.09 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 026646 84 KLRRDRLNERFLELGSMLEPG 104 (235)
Q Consensus 84 RrRRekINd~F~eLrslLP~~ 104 (235)
|.+=+.++..-..+.+.+|..
T Consensus 219 R~hleqm~~~~~~I~~~~~~~ 239 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPET 239 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHH
Confidence 444444444555555555543
No 128
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.48 E-value=5.8 Score=34.78 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
.++.+.|..++.+-+.++.++.++|.+|+...-+|++
T Consensus 109 ~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 109 LEERKKLEKKIEEKEAELKELESEIKELEMKILELQR 145 (190)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333444444444444444433
No 129
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.48 E-value=8.1 Score=31.43 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKE 145 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~e 145 (235)
.+|.-|..|+.+...++.+...|+.+...
T Consensus 56 ~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 56 EDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655555433
No 130
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.47 E-value=11 Score=27.67 Aligned_cols=54 Identities=28% Similarity=0.463 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
|..=|+-=..|+.++.+.+..|..+..++++-.....+|..+...|+.+++.++
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555667777777777777777777776666677777777766666554
No 131
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.45 E-value=2.8 Score=42.98 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
-..-|+.|...+++|+.+|..|+.++.+|+.++.+|+++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777777777766666666666665543
No 132
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.44 E-value=6.7 Score=32.72 Aligned_cols=45 Identities=27% Similarity=0.474 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
|++-+..|..++..|+.++..+..+|..|......|..+...+..
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555554444444443333333
No 133
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=86.21 E-value=6.2 Score=28.62 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=39.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..+.+|......|..++..|..+.+-||.+....|.|-.|-.+-|..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999999888888877766654
No 134
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.15 E-value=2.9 Score=33.24 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+|+++++.+++++++| +.+...|+.|...|+...+-++.+.+.
T Consensus 31 ~l~~q~~~~~~e~~~l-------~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 31 RVNDQVAAQQQTNAKL-------KARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 3444444444444444 444445555555555555666666655
No 135
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.11 E-value=2.7 Score=33.38 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
.++++++.+++.+..+|+.++..|+.|+++|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344555555555666666666666666665544
No 136
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.08 E-value=4.1 Score=43.18 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
|..+=-+.|++|..+.+.|++.+..|+.++++|..+..++-.+.+.|+.+.+.|+.||+-.+.
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~ 720 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISS 720 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344444555566666666666667777777777777777777888889999999999985433
No 137
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.05 E-value=4.8 Score=40.81 Aligned_cols=7 Identities=29% Similarity=0.857 Sum_probs=4.6
Q ss_pred CCcCCCC
Q 026646 26 NFDWPSQ 32 (235)
Q Consensus 26 ~~~~~~~ 32 (235)
+|.|...
T Consensus 55 Tf~Wa~~ 61 (546)
T PF07888_consen 55 TFVWAPV 61 (546)
T ss_pred eEEeecc
Confidence 5788653
No 138
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=85.95 E-value=5.9 Score=35.55 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKAD 163 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e 163 (235)
=.-+.+..+.+|+++.++|++++.+|+.++.++ +++++|+.+|+..
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~l 108 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQEL----EQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 334445556667777777777777776665444 4555666666543
No 139
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.82 E-value=9.9 Score=31.20 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 026646 81 CREKLRRDRLNERFLELGSML 101 (235)
Q Consensus 81 ~~ERrRRekINd~F~eLrslL 101 (235)
.++...|+.+++.+..|.+-+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~ 68 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDI 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 466778888888887777654
No 140
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.74 E-value=7 Score=32.93 Aligned_cols=57 Identities=21% Similarity=0.456 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..-+-+..+....+.+.++...++.++.+++.+..+++.+...+..+...+++++..
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444344444455555555555555555555555543
No 141
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=85.73 E-value=9.6 Score=35.90 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-|++|=++=+.+-+.|..+ ++.|..+..+|++....|..||..|.+-|..
T Consensus 238 AAtRYRqKkRae~E~l~ge-------~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGE-------LEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778866555554444444 4444455555555555666666666655543
No 142
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=85.65 E-value=3.2 Score=38.21 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
+-+..+.+|++|.++|++++.+|+.+.. ....+|+.||.+|+..++-
T Consensus 63 ~~~~~~~~l~~EN~~Lr~e~~~l~~~~~---~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 63 ENLKDVNNLEYENYKLRQELLKKNQQLE---ILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 3344445577899999999888754433 3345578888888765443
No 143
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=85.45 E-value=4.3 Score=37.58 Aligned_cols=90 Identities=29% Similarity=0.326 Sum_probs=64.1
Q ss_pred CCcCCCCCcccc------C-cCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 63 GSRKRLRSESCC------V-SGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQS 135 (235)
Q Consensus 63 ~~~KR~R~es~~------~-~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e 135 (235)
..+||.|-..-+ + +.++.+.-.--||+=+.|+.++-..| .|-++--..|+.+.+.|...
T Consensus 54 ~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i--------------~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 54 PKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEI--------------KDLTEENEILQNENDSLRAI 119 (292)
T ss_pred hHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 356776654321 2 23333455556777777777776544 34455566789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 136 NENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 136 ~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
|+.|..+.++|..+..++|+|...||.+..-
T Consensus 120 n~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 120 NESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999988876543
No 144
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.41 E-value=5.1 Score=37.60 Aligned_cols=6 Identities=0% Similarity=0.235 Sum_probs=2.9
Q ss_pred ccccCC
Q 026646 17 IVDDIP 22 (235)
Q Consensus 17 ~~~~~~ 22 (235)
|+||+.
T Consensus 23 Fmdd~t 28 (312)
T smart00787 23 FMELLT 28 (312)
T ss_pred eecccc
Confidence 455443
No 145
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=85.33 E-value=8.2 Score=39.02 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 85 LRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 85 rRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
-=+..||+-|..|..+.-.-. .-.-|.+||++|-.....+...-..|+........+|...-.+.|.|=++...|..+|
T Consensus 108 sl~~~L~~ff~s~q~la~~P~-~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI 186 (552)
T COG1256 108 SLSTLLNDFFNSLQELASNPS-DTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQI 186 (552)
T ss_pred cHHHHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887764221 3477888999998888888888777777766666676666666666665555555444
Q ss_pred HH
Q 026646 165 EK 166 (235)
Q Consensus 165 e~ 166 (235)
-+
T Consensus 187 ~~ 188 (552)
T COG1256 187 RK 188 (552)
T ss_pred HH
Confidence 43
No 146
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.16 E-value=5.5 Score=33.05 Aligned_cols=50 Identities=20% Similarity=0.386 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+|.++++.|....++..+-++..+.+..+++++....+.+++.+++-+..
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45566777776666666666667777777777777777777666655543
No 147
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.10 E-value=1.6 Score=31.98 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
+.+.|+++|.+|....++|..||..||+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555543
No 148
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=85.00 E-value=8.7 Score=31.38 Aligned_cols=61 Identities=28% Similarity=0.418 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
......+..|..++..|-+.|-.++.++..++.+..++.++...|+.+-..+++++..+..
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445556666666666666667777888888888888888888888888888887743
No 149
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=84.98 E-value=3.2 Score=34.13 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
+..|.+.+|.=- .=...+|.+-|+++|++|....+.|+.||..||.-.
T Consensus 50 IeQAMDLVKtHL--mfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 50 IEQAMDLVKTHL--MFAVREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445666655311 112345666778888888877888888888887654
No 150
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.91 E-value=7 Score=34.28 Aligned_cols=46 Identities=28% Similarity=0.428 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.++.+|+....+|+.+...++.++.....|..+|+++.+.+++++.
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333333444444444444444443
No 151
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.90 E-value=5.4 Score=34.35 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
++|..+++.+...++.|+.++..|..+.|-+.+....|+.|...|-
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556666666666666666666666666665553
No 152
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=84.81 E-value=2.9 Score=40.19 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
+.+.--.+.|.....+|+.++..|+.++++++.+.+.++.|...++.+++++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 11 SSTTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444556666677777777888888888888888888888888888888754
No 153
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=84.58 E-value=12 Score=33.98 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 026646 78 SKACREKLRRDRLNERFLE 96 (235)
Q Consensus 78 sH~~~ERrRRekINd~F~e 96 (235)
......++||..|-+.+..
T Consensus 142 a~~~~~~~rR~~i~e~I~~ 160 (254)
T PF15458_consen 142 AEREQKRRRREEIEEAIND 160 (254)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445677788888888877
No 154
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.58 E-value=8.3 Score=34.31 Aligned_cols=61 Identities=30% Similarity=0.399 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
++..|++.=+-|..+++.|+.....|+++.+.|-++-..+..|++.|-++++.|+.+-..+
T Consensus 54 s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 54 SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456666666666666666666666666666666666666666666666666666665543
No 155
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.57 E-value=10 Score=31.95 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhcCC
Q 026646 88 DRLNERFLELGSMLE 102 (235)
Q Consensus 88 ekINd~F~eLrslLP 102 (235)
+.|.+++..|-.=|.
T Consensus 20 dsle~~v~~LEreLe 34 (140)
T PF10473_consen 20 DSLEDHVESLERELE 34 (140)
T ss_pred hhHHHHHHHHHHHHH
Confidence 445555555555443
No 156
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.48 E-value=9 Score=32.28 Aligned_cols=88 Identities=19% Similarity=0.359 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 80 ACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAV----QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 80 ~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAI----eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
....+.+-..+.+.+.++...+-.. .....-+.+.. +..+..+.+++.++.....+.+++.++..+..+.++
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 158 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQEL----ESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSRE 158 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666655555311 11222222222 222244444444555555555555555544444445
Q ss_pred HHHHHHHHHHHHHHHH
Q 026646 156 EKQRLKADKEKLEQQV 171 (235)
Q Consensus 156 E~~~Lk~e~e~le~ql 171 (235)
+...++.+..++++..
T Consensus 159 ~~~~~~~~~~~~~~~~ 174 (191)
T PF04156_consen 159 EVQELRSQLERLQENL 174 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554443
No 157
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=84.26 E-value=3.9 Score=29.57 Aligned_cols=34 Identities=15% Similarity=0.392 Sum_probs=13.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 131 KLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
+|+.+...+...+.-++.|.++++++...++..+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333443334444444444444444443333
No 158
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.98 E-value=6.7 Score=35.44 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEK 142 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~e 142 (235)
+..+-+=++.++.+++.|..+...|+.+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~ 238 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAK 238 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccc
Confidence 3333344444444444444433333333
No 159
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=83.86 E-value=0.62 Score=36.84 Aligned_cols=49 Identities=31% Similarity=0.568 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
.+.=+||..|..++..|..++..|+.++..|..+..+++.....|+..+
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 3455788888888888888888877777777666666665555554443
No 160
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=83.77 E-value=3.8 Score=38.90 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 178 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p 178 (235)
.|...+.+++.++++|+.++++| ..+...++.++++++.+++.+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDL-------EAENEKLERELERLKSELEKLKSPP 52 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34444445544555554444444 4444455566666666666665554
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.75 E-value=4.5 Score=41.54 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
+.+--+-++.|+.+++.|+.++++++.+|..|+.+..+++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666666666666666666666655554443
No 162
>PRK09039 hypothetical protein; Validated
Probab=83.73 E-value=7.5 Score=36.71 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+.+|..|..+.+.|+.++..|..++..+..+....+.+++.|++.|..
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555566665555544
No 163
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=83.72 E-value=8.5 Score=36.75 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
-+.+|+.+.++|+.+..++..+++++..+|.++..+.-
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~ 182 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLY 182 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888999888898888888888888877653
No 164
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=83.60 E-value=5.9 Score=28.91 Aligned_cols=58 Identities=10% Similarity=0.332 Sum_probs=36.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.+|-..|.++-.+|.+...-+.+|+-|...+.. .+++.+.......++++.+|+.+|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577777777777777777777777766655532 3344455555555566666666554
No 165
>PF14282 FlxA: FlxA-like protein
Probab=83.57 E-value=6.9 Score=31.02 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEK----IKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~e----i~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-..|+.|+.+++.|.+++..|... .+.-......|..+...|.++|-.++.+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777766552 1222333334555555555555555555433
No 166
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=83.42 E-value=9.4 Score=39.86 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=4.4
Q ss_pred cccccCCC
Q 026646 44 SVTIDCSF 51 (235)
Q Consensus 44 ~~~~~~~~ 51 (235)
.|..||..
T Consensus 641 ~vTldG~~ 648 (1164)
T TIGR02169 641 MVTLEGEL 648 (1164)
T ss_pred EEEeCcee
Confidence 45666554
No 167
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.40 E-value=9.4 Score=31.05 Aligned_cols=40 Identities=33% Similarity=0.421 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
|+..++.|..++..+...+.+|.+++++++.....-|..+
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666667777777777665444333333
No 168
>PRK14127 cell division protein GpsB; Provisional
Probab=83.36 E-value=7.6 Score=31.48 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 146 LKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
|..|..+|++++..|+.++..++.++..
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444555555555555555554
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.25 E-value=6.6 Score=35.67 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+-+|+++++.|+.++.+|+=+|+++.-+.+++.+.-..+..+++++-.++
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566666666666666666666666666666665556666666654433
No 170
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.99 E-value=9.3 Score=31.08 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
+.+.|+..+..|+.+-..+...+++|+.+...+...++
T Consensus 38 qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 38 QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555545555555555555444444443
No 171
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=82.98 E-value=9 Score=31.21 Aligned_cols=58 Identities=22% Similarity=0.391 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSN-ENLQEKIKELKAEK--------NELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~-~~L~~ei~eLk~Ek--------nELr~E~~~Lk~e~e~le~qlk 172 (235)
...|-+|+.+|-++.+.-+.+. ++++.+|+.+.... .+|+.+...|+.++-.|+.+++
T Consensus 41 ~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 41 AEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678889998888877544433 23455555554444 3566666666666666666654
No 172
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=82.89 E-value=8.4 Score=29.57 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
++..+|+..+...+++|..|+.=...||.....+..-..+|+.+
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~ 48 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQ 48 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333344433
No 173
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=82.71 E-value=11 Score=33.44 Aligned_cols=46 Identities=26% Similarity=0.468 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
|-.-...+..+|..|+.++.+|..+...|+..+..|..++..|.++
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666555555555655555555555555444
No 174
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.42 E-value=8.3 Score=33.56 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026646 156 EKQRLKADKEKLEQQVK 172 (235)
Q Consensus 156 E~~~Lk~e~e~le~qlk 172 (235)
++..|+.++..|+.+|.
T Consensus 111 ~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 111 ELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 175
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=82.40 E-value=5 Score=28.99 Aligned_cols=37 Identities=22% Similarity=0.505 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..|+.++..+....+-+|.|++.++.+++++++-++-
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777777777777777776665
No 176
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.37 E-value=32 Score=31.08 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHhH
Q 026646 122 MEQLRTEAQKLKQSNE 137 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~ 137 (235)
|.+|+.++..+..++.
T Consensus 56 l~~lr~~id~~~~eka 71 (312)
T PF00038_consen 56 LRELRRQIDDLSKEKA 71 (312)
T ss_dssp HHCHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHhh
Confidence 3444444444433333
No 177
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=82.36 E-value=7.6 Score=28.50 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
+.|.+|+.++.-++...++|...+-....++..|+.+...|...+..++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666666666666665555666666666666655555554
No 178
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.33 E-value=4.8 Score=37.89 Aligned_cols=59 Identities=14% Similarity=0.322 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCC
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA-PSGFLPH 183 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~-~p~~~p~ 183 (235)
|+..++....+.+++..+++-++.+.++|.....+-|.|.|++++-|.++.+ .|+||..
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdE 169 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDE 169 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4444555555555666666666667777777777888888888888888754 6766654
No 179
>PRK02119 hypothetical protein; Provisional
Probab=82.18 E-value=14 Score=27.64 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
...-+.|.+|+.++.-++...+.|...+-....++..|+.+...|...+..++
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445677788888777777777777777777777777777777766555544
No 180
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.17 E-value=6.8 Score=36.18 Aligned_cols=83 Identities=27% Similarity=0.329 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 88 DRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQ-LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 88 ekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~-Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
+.+++.+...+.-+... -...|-.||+.++.-+.. .+..+-..-..|..++.++..-+.++++|.++...|+++++.
T Consensus 141 del~e~~~~el~~l~~~--~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 141 DELNEMRQMELASLSRK--IQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444444444322 345667788876655444 444444445566667777766677777777777777777777
Q ss_pred HHHHHH
Q 026646 167 LEQQVK 172 (235)
Q Consensus 167 le~qlk 172 (235)
|..+..
T Consensus 219 L~~~~~ 224 (258)
T PF15397_consen 219 LQAQAQ 224 (258)
T ss_pred HHHhhc
Confidence 777765
No 181
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.15 E-value=7.5 Score=39.81 Aligned_cols=55 Identities=25% Similarity=0.483 Sum_probs=36.6
Q ss_pred HHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 120 QMMEQLRTE----AQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 120 eYIk~Lq~q----v~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+.|++|+.+ ++.|+.+...|++++..|..+.+.|+.|+......+..|+.+|..+
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566554 4456666677777777777777777777776666677777666654
No 182
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.01 E-value=6.7 Score=39.10 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 142 KIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 142 ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
+.+.|+.+...++.....|..+.
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554433
No 183
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=82.00 E-value=12 Score=30.02 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026646 81 CREKLRRDRLNERFLELGSMLEPGRPPKTDKATI-LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDE 156 (235)
Q Consensus 81 ~~ERrRRekINd~F~eLrslLP~~~~~K~dKasI-L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E 156 (235)
...++||..|......+...+- ..++ +...+.-+..|+.+++.++++++.|..+...|+.+.+.|+++
T Consensus 18 ~~~~~~~~~l~~~l~~~l~~f~--------~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 18 ERRVRRRRILTLVLLALLALFQ--------YLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455566566555555544441 1111 222333334456666666666666666666666666666665
No 184
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.75 E-value=7.2 Score=39.95 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
.|...|+.+...+++.+.++.+++..|+.|+.........|...+.+|+.|+....
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 49999999999999999999999999999999999999999999999998887543
No 185
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=81.70 E-value=18 Score=30.05 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+...-.+.+++..+.|.+++......+..|+++++........-......|+..+..++.+++.
T Consensus 17 ~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 17 EDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567778888888887776666666666666555444443333444444444444444444
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.68 E-value=7.8 Score=35.20 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
-+|+.+|+.|+.|+.+||-.+..+.-+++.+++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555443
No 187
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=81.63 E-value=15 Score=25.44 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
.|+..|+.++..|+.+|..|..+|..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555555555555543
No 188
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=81.59 E-value=17 Score=33.60 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 88 DRLNERFLELGSMLE-PGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 88 ekINd~F~eLrslLP-~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
..||+-|..|.++-- |. ....+.++|..|-.....++.--..|+........+|+..-.+.|.|-++...|..+|..
T Consensus 107 ~~l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 107 TYLNNFFNALQELAKNPD--SEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666542 12 456688888888888888887777777766667777777777777777666666666654
Q ss_pred H
Q 026646 167 L 167 (235)
Q Consensus 167 l 167 (235)
.
T Consensus 185 ~ 185 (322)
T TIGR02492 185 V 185 (322)
T ss_pred H
Confidence 3
No 189
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.49 E-value=5.7 Score=37.70 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
..++++|+.+++.|+..+..|..+++.++.+..++++++..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45666788899999999999999988888888888777765543
No 190
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.49 E-value=12 Score=40.99 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 84 KLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKAD 163 (235)
Q Consensus 84 RrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e 163 (235)
+..++++++.+..|.+-+... +..|.. |..++.-..+|+.++.+|..++..+..++++++.+...|..+...+..+
T Consensus 849 ~~e~e~~~~eI~~Lq~ki~el---~~~klk-l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKSKTNEL---KSEKLQ-IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 556666777777776666432 223333 3337777778888888888888888887777777777776666666666
Q ss_pred HHHHHHHH
Q 026646 164 KEKLEQQV 171 (235)
Q Consensus 164 ~e~le~ql 171 (235)
.+++..+.
T Consensus 925 ~~~~~~~~ 932 (1311)
T TIGR00606 925 KEELISSK 932 (1311)
T ss_pred HHHHHHHH
Confidence 65544443
No 191
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.47 E-value=9.4 Score=39.94 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHh
Q 026646 159 RLKADKEKLEQQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~le~qlk~ 173 (235)
..+.+.+.+-.+++.
T Consensus 576 ~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 576 ALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444444444554
No 192
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=81.38 E-value=9 Score=31.29 Aligned_cols=53 Identities=30% Similarity=0.429 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-++.++..++.+..+|..|-+..-.+..+..++|++...+..+...|+.++..
T Consensus 28 ~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 28 QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555543
No 193
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=81.28 E-value=16 Score=29.30 Aligned_cols=93 Identities=16% Similarity=0.260 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCchhhHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 79 KACREKLRRDRLNERFLELGSMLEP---GRPPKTDKATILS-DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 79 H~~~ERrRRekINd~F~eLrslLP~---~~~~K~dKasIL~-dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
-.-.+|..|+. =|..|...|.. ++-...+..-+.. ..+.+++=+|-.++-|-...+.|...+..|+.+...+.
T Consensus 17 ~iDvd~i~~~~---Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~ 93 (118)
T PF13815_consen 17 AIDVDRIVREL---DIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQ 93 (118)
T ss_pred ccCHHHHHhcc---CHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467777752 24445555543 2111222222222 24577788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 026646 155 DEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 155 ~E~~~Lk~e~e~le~qlk~~ 174 (235)
.+...|+....+...+++.+
T Consensus 94 ~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 94 QEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865
No 194
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=81.15 E-value=16 Score=28.68 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 139 LQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 139 L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
++.++++|..+++.|.+|+..|+.+++
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 195
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.14 E-value=8.9 Score=34.18 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=39.8
Q ss_pred HHHhcCCCCCCCCCchhhHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHH
Q 026646 96 ELGSMLEPGRPPKTDKATIL-----------SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKN-------ELRDEK 157 (235)
Q Consensus 96 eLrslLP~~~~~K~dKasIL-----------~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ekn-------ELr~E~ 157 (235)
.|.+||..+- -..+|..+- .+---|...|+.+.+.+.+....|.+.+...++-.. +|..+.
T Consensus 47 vLQsLvDD~l-V~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kkl 125 (203)
T KOG3433|consen 47 VLQSLVDDGL-VIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKL 125 (203)
T ss_pred HHHHHhccch-HHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5666676542 234444443 233346667777777777766666666555444332 333344
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 158 QRLKADKEKLEQQVK 172 (235)
Q Consensus 158 ~~Lk~e~e~le~qlk 172 (235)
..|+.+++.+..+|.
T Consensus 126 nslkk~~e~lr~el~ 140 (203)
T KOG3433|consen 126 NSLKKILESLRWELA 140 (203)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 196
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=81.06 E-value=8.9 Score=32.44 Aligned_cols=8 Identities=50% Similarity=0.621 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 026646 146 LKAEKNEL 153 (235)
Q Consensus 146 Lk~EknEL 153 (235)
|+.++.+|
T Consensus 56 Lk~~i~~l 63 (155)
T PF06810_consen 56 LKKQIEEL 63 (155)
T ss_pred HHHHHHHH
Confidence 33333333
No 197
>PRK04325 hypothetical protein; Provisional
Probab=81.02 E-value=8.6 Score=28.82 Aligned_cols=49 Identities=8% Similarity=0.094 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
+.|.+|+.++.-++...+.|...+-.-..++..|+.+...|...+..++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888888877777777777777777777765555443
No 198
>COG5570 Uncharacterized small protein [Function unknown]
Probab=81.01 E-value=5.5 Score=28.84 Aligned_cols=21 Identities=48% Similarity=0.591 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026646 150 KNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 150 knELr~E~~~Lk~e~e~le~q 170 (235)
+-+|...|-+||.+||+|..|
T Consensus 35 i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 35 IRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 345556667777777777655
No 199
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.58 E-value=11 Score=32.84 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 026646 85 LRRDRLNERFLELGSMLE 102 (235)
Q Consensus 85 rRRekINd~F~eLrslLP 102 (235)
.|++=.|..|.+|---|-
T Consensus 59 vr~~ly~~~F~ELIRQVT 76 (189)
T PF10211_consen 59 VREELYSQCFDELIRQVT 76 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666667777665553
No 200
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=80.53 E-value=11 Score=36.16 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 92 ERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKE---LKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 92 d~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~e---Lk~EknELr~E~~~Lk~e~e~le 168 (235)
+-|..|-...+.. .+.==|.| +--+|++.|++++++|+.+.++|.+++++ .+..+.++.++..++..+++.++
T Consensus 218 ~Yf~~l~~~f~d~--a~~~~A~l--~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 218 EYFENLYDAFGDK--AKFFLAEL--NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHCCCC--EEEEEEEE--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC--eEEEEEEE--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777432 11111111 12367777777777777777777665443 33445567777778888888887
Q ss_pred HHHHh
Q 026646 169 QQVKA 173 (235)
Q Consensus 169 ~qlk~ 173 (235)
..+..
T Consensus 294 ~~~~~ 298 (406)
T PF02388_consen 294 ELIAE 298 (406)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77665
No 201
>PRK04654 sec-independent translocase; Provisional
Probab=80.47 E-value=15 Score=33.25 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
..-++|+++|+.....+++..+ +.++++|+.+.++++.+...++.++..
T Consensus 31 tlGk~irk~R~~~~~vk~El~~-El~~~ELrk~l~~~~~~i~~~~~~lk~ 79 (214)
T PRK04654 31 FAGLWVRRARMQWDSVKQELER-ELEAEELKRSLQDVQASLREAEDQLRN 79 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666665555554322 112334444444433333333333333
No 202
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=80.45 E-value=22 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
+++|++.++++.+....+++++..+..|.+++
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~l 52 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDL 52 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 203
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.41 E-value=17 Score=32.89 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026646 152 ELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~q 170 (235)
.+.+|...||.+++++..+
T Consensus 85 r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 85 RLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 204
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=80.32 E-value=2.2 Score=43.27 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
..|+..+++|.+|...||.||..||.+++-+..+=+.+-+
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 3455555666666556666666666666655554443333
No 205
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.22 E-value=22 Score=26.56 Aligned_cols=54 Identities=31% Similarity=0.479 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.+--..|..+...+...+.+|+.++.++..+..+|......+..+++.|+..++
T Consensus 18 ~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 18 MEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445555555566666666666666666666666666666666666666654
No 206
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.14 E-value=20 Score=36.50 Aligned_cols=85 Identities=24% Similarity=0.421 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCchhhH-HHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 84 KLRRDRLNERFLELGSMLEPGRPPKTDKATI-LSDAVQMMEQLRTEAQKLKQ---SNENLQEKIKELKAEKNELRDEKQR 159 (235)
Q Consensus 84 RrRRekINd~F~eLrslLP~~~~~K~dKasI-L~dAIeYIk~Lq~qv~~L~~---e~~~L~~ei~eLk~EknELr~E~~~ 159 (235)
=.|=+++.+|+..|+.+- .|-.. +.+.++|..+++.+.+.|.. ..++|+.+++.++.+..+.-...+.
T Consensus 296 p~~L~~ve~Rl~~L~~l~--------RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~ 367 (557)
T COG0497 296 PNRLEEVEERLFALKSLA--------RKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSA 367 (557)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888875 34444 88999999999999998886 3567777888888777776666654
Q ss_pred HHHHH-----HHHHHHHHhccC
Q 026646 160 LKADK-----EKLEQQVKAMSA 176 (235)
Q Consensus 160 Lk~e~-----e~le~qlk~~~~ 176 (235)
.+... ..+.++|+.++.
T Consensus 368 ~R~~~A~~L~~~v~~eL~~L~M 389 (557)
T COG0497 368 IRKKAAKELEKEVTAELKALAM 389 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 44332 345666777655
No 207
>PRK04406 hypothetical protein; Provisional
Probab=80.12 E-value=12 Score=28.28 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
-+.|.+|+.++.-++...+.|...+-....++..|+.+...|...+..+
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3477788888888888888887777777777777777777775555443
No 208
>PRK15396 murein lipoprotein; Provisional
Probab=79.99 E-value=12 Score=28.63 Aligned_cols=41 Identities=17% Similarity=0.438 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
=|.+|..+|+.|..+..++...++.++.....-.+|-.+-.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN 66 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARAN 66 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777766666666666665555554444443
No 209
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.69 E-value=12 Score=31.27 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 026646 164 KEKLEQQV 171 (235)
Q Consensus 164 ~e~le~ql 171 (235)
|.-|+.+|
T Consensus 82 iq~LEeel 89 (143)
T PF12718_consen 82 IQLLEEEL 89 (143)
T ss_pred HHHHHHHH
Confidence 33333333
No 210
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=79.60 E-value=14 Score=28.55 Aligned_cols=57 Identities=32% Similarity=0.504 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQE---KIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~---ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.+.-+..|+.+...+.++..++.. +..+|+.+..++.++...+..+...++.++..+
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554433 355666666666666666667777777666653
No 211
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.58 E-value=25 Score=30.44 Aligned_cols=51 Identities=29% Similarity=0.474 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..|+.++..+.....+|...+..|+..+.+++.+...|++....-+.+.+.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~ 151 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKV 151 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555556666666666666666666666666655555543
No 212
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.55 E-value=9.2 Score=40.01 Aligned_cols=14 Identities=7% Similarity=0.382 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 026646 159 RLKADKEKLEQQVK 172 (235)
Q Consensus 159 ~Lk~e~e~le~qlk 172 (235)
..+.+.+.+-.+|+
T Consensus 581 ~a~~~~~~~i~~lk 594 (782)
T PRK00409 581 EAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 213
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=79.49 E-value=14 Score=37.30 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 026646 84 KLRRDRLNERFLELGSMLEP 103 (235)
Q Consensus 84 RrRRekINd~F~eLrslLP~ 103 (235)
.++.+++++.+..|++..+.
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~ 68 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPK 68 (646)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 45677788888888887764
No 214
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=79.17 E-value=15 Score=29.52 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=22.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 130 QKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
...-.....++.++..++++...|..++..|++++++|+..
T Consensus 46 ~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 46 KNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33334444455555555555566666666666666666555
No 215
>PF14282 FlxA: FlxA-like protein
Probab=79.14 E-value=8.8 Score=30.41 Aligned_cols=60 Identities=23% Similarity=0.363 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQ----SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~----e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
.+.+..--.-|+.|+.++..|.. ..+.-+.+++.|..++..|......|..++-.-..+-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555556667777777777776 2245566667777777777777776666665544443
No 216
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=79.06 E-value=6.5 Score=39.74 Aligned_cols=31 Identities=39% Similarity=0.637 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
.++.+++.++..++++|++|...|+.+++.|
T Consensus 96 ~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 96 EKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444433
No 217
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.02 E-value=14 Score=37.59 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 146 LKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
|+.|++.|..++..+...|..|+..++
T Consensus 204 l~~E~~~L~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 204 LKEERESLKEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443
No 218
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=78.77 E-value=21 Score=25.69 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 026646 154 RDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 154 r~E~~~Lk~e~e~le~qlk~~ 174 (235)
+.....+..++++|+..|..|
T Consensus 45 r~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 45 REKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444567777788888777654
No 219
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=78.68 E-value=26 Score=33.09 Aligned_cols=73 Identities=25% Similarity=0.483 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 86 RRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 86 RRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
+|+.|+....++++--. +...-+++|..+++.|..+...+.+++.+|+.+.+++....+.|..+..
T Consensus 28 kR~El~~~~~~~~ekRd--------------eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 28 KRDELRKEASELAEKRD--------------ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666555332 2233455666666666666666666666666666666665555555555
Q ss_pred HHHHHHH
Q 026646 166 KLEQQVK 172 (235)
Q Consensus 166 ~le~qlk 172 (235)
.+-....
T Consensus 94 ~l~e~~~ 100 (294)
T COG1340 94 ELKEKRN 100 (294)
T ss_pred HHHHHhh
Confidence 5544444
No 220
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=78.60 E-value=8.3 Score=26.40 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026646 152 ELRDEKQRLKADKEKLE 168 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le 168 (235)
.|+.++..||-+|.++.
T Consensus 31 ~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 31 RLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 221
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.58 E-value=9.3 Score=38.97 Aligned_cols=25 Identities=24% Similarity=0.536 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 148 AEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 148 ~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.|.++|..+...+..++++|.+.+.
T Consensus 339 ~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 339 LERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554443
No 222
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.57 E-value=19 Score=30.39 Aligned_cols=69 Identities=25% Similarity=0.434 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 178 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p 178 (235)
..+-+|...=+=++.+..+...++.++......+..+..+...+..+...++.++.+|..+...+..|.
T Consensus 74 ~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ 142 (177)
T PF13870_consen 74 KTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPA 142 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 455667777777777777777777777777777777777777777777777777777777766665543
No 223
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=78.49 E-value=21 Score=35.27 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
.|++-|..|..+--.- .....+..+|..|-.....++.-...|+.....+..+|+..-.+.|.|-++...|..+|.+
T Consensus 120 ~l~~ff~a~~~la~~P-~~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 196 (507)
T PRK07739 120 VLDQFWNSLQELSKNP-ENLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAK 196 (507)
T ss_pred HHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666554311 1456788889998888888888777777777777777777777777777777777666654
No 224
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=78.47 E-value=9 Score=35.88 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
|++++..=.+.++++... ..+.+.+ .+.-+-+++|+.+.++++.+.+.+..+++++..
T Consensus 5 ~~~~~~~~~~~r~l~~~~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 5 KEQREEIVAEIRSLLDKA-EKLEKEL---TAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHHHHhhh-hhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777410 0112221 222222445555555555555555555544443
No 225
>PRK02224 chromosome segregation protein; Provisional
Probab=78.45 E-value=17 Score=37.60 Aligned_cols=41 Identities=32% Similarity=0.474 Sum_probs=17.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 133 KQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 133 ~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+.....++.++..+..++.++.++...++..+..++.+++.
T Consensus 257 ~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~ 297 (880)
T PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDD 297 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444443333
No 226
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.43 E-value=9.7 Score=38.65 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+.++..++..+..|.+|+..||.|+.+|..+|..+
T Consensus 154 eAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 154 EAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34456666666777778888888888888877764
No 227
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.37 E-value=13 Score=37.76 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=28.4
Q ss_pred chhhHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 110 DKATIL----SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 110 dKasIL----~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
+++.++ ..-+.-+.+++.+..+|..++..++.+++++..|++|+..-.
T Consensus 212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455555 333334444555666666666677777777777777665533
No 228
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.27 E-value=13 Score=33.96 Aligned_cols=10 Identities=40% Similarity=0.673 Sum_probs=6.5
Q ss_pred CCccccccCC
Q 026646 199 GNKLVPFIGY 208 (235)
Q Consensus 199 ~~k~~p~~~~ 208 (235)
|..+||+-|-
T Consensus 189 g~gvvpl~g~ 198 (239)
T COG1579 189 GVGVVPLEGR 198 (239)
T ss_pred CceEEeecCC
Confidence 5566777764
No 229
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.26 E-value=17 Score=34.05 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
..+-..+...+.++.+++.....|+.+.+....++.+|..+..
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~ 273 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIE 273 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444334444433333
No 230
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.25 E-value=8.1 Score=37.27 Aligned_cols=9 Identities=67% Similarity=0.774 Sum_probs=4.0
Q ss_pred cchHHHHHH
Q 026646 78 SKACREKLR 86 (235)
Q Consensus 78 sH~~~ERrR 86 (235)
.|+.+|+.|
T Consensus 212 isa~~eklR 220 (365)
T KOG2391|consen 212 ISAVREKLR 220 (365)
T ss_pred HHHHHHHHH
Confidence 344444443
No 231
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.24 E-value=13 Score=34.77 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+...+.+.+..+.+...++.++..|+.+.++...|+..|..+++.++..|..
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344444455555556666666666666666666777777777776666665
No 232
>PRK02793 phi X174 lysis protein; Provisional
Probab=78.22 E-value=17 Score=27.05 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
-+.|.+|+.++.-++...+.|.+.+-....++..|+.+...|...+..++
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35777888888888888888888777777777788877777766665554
No 233
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.98 E-value=12 Score=37.46 Aligned_cols=62 Identities=15% Similarity=0.348 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
.+...+-+.+|..++..++.+...+.+.+..|+.+..+.++....++..+..+...|+..+.
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66677777778888888888888888888888888888888888888877777777776554
No 234
>PF15294 Leu_zip: Leucine zipper
Probab=77.74 E-value=8.4 Score=35.99 Aligned_cols=58 Identities=31% Similarity=0.471 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 111 KATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 111 KasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
|..-|.+. .-+.-|..++.+|+.+|++|++.+..+...-...-+|+..|+.++..++.
T Consensus 117 KL~pl~e~-g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 117 KLEPLNES-GGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred cccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443 22344677888888888888888888877777777788888777777776
No 235
>PRK03918 chromosome segregation protein; Provisional
Probab=77.72 E-value=19 Score=37.13 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=4.9
Q ss_pred HHHHHHHHHhcC
Q 026646 90 LNERFLELGSML 101 (235)
Q Consensus 90 INd~F~eLrslL 101 (235)
+...+..|...+
T Consensus 174 ~~~~~~~l~~~l 185 (880)
T PRK03918 174 IKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 236
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=77.52 E-value=21 Score=28.26 Aligned_cols=52 Identities=25% Similarity=0.468 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-|..++.+.-.++..|.+|-.++.+|+.+...-+. ...++.++++++..++.
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555444433322 34566777777777765
No 237
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.30 E-value=13 Score=33.04 Aligned_cols=53 Identities=26% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEK--NELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~Ek--nELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
..|+.+++.|+++......+|++|..-. .|++++.+.|+.+.-..+..|+.+-
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554432 3566677777777777666666543
No 238
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.28 E-value=10 Score=39.90 Aligned_cols=41 Identities=22% Similarity=0.546 Sum_probs=29.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 134 QSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 134 ~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+..+.|.++.+.+++...+++.++.+|..++|+|.++++.+
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34456677777777777777777777777777777777664
No 239
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=77.26 E-value=9.2 Score=37.00 Aligned_cols=51 Identities=25% Similarity=0.434 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAE----KNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~E----knELr~E~~~Lk~e~e~le~qlk~ 173 (235)
++|+.+++.|+.+...+..+|..++.. ..+|.++...|+.++..++.+++.
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 94 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKA 94 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555444444444332211 223344444444444444444433
No 240
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=77.18 E-value=25 Score=30.41 Aligned_cols=64 Identities=23% Similarity=0.419 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 111 KATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 111 KasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.-.+-..|+.-+..++.++..|+.....+...+..|+..+.+|+.....++.+.+-|..+.++.
T Consensus 82 ~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 82 REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777788888888888888888888888888888888888888888877777776654
No 241
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.16 E-value=16 Score=31.84 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhHHH
Q 026646 125 LRTEAQKLKQSNENL 139 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L 139 (235)
|+.+++.++.+...|
T Consensus 74 l~~~~~~~~~~i~~l 88 (188)
T PF03962_consen 74 LQKEIEELEKKIEEL 88 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 242
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=77.10 E-value=18 Score=32.84 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=27.0
Q ss_pred HhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 135 SNENLQEKIKE-LKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 135 e~~~L~~ei~e-Lk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
...+++.++.. .+.|-..||.|+..|++|+|++.++|..
T Consensus 102 ~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 102 DFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444332 2345556899999999999999998876
No 243
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.84 E-value=11 Score=35.71 Aligned_cols=46 Identities=26% Similarity=0.465 Sum_probs=36.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 129 AQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 129 v~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.+++...+++|+.+++.+.-|+.|+..|-...+...+||.++|..+
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777778888888888888888888888888888888888763
No 244
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=76.80 E-value=2.8 Score=36.29 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEA 129 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv 129 (235)
|..||+.---|+.++
T Consensus 9 lN~AIERnalLE~EL 23 (166)
T PF04880_consen 9 LNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH
Confidence 455666666666655
No 245
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.62 E-value=16 Score=33.37 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEK 150 (235)
Q Consensus 138 ~L~~ei~eLk~Ek 150 (235)
.++.+.+.|+.++
T Consensus 49 ~~~~e~e~le~qv 61 (239)
T COG1579 49 ALEIELEDLENQV 61 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 246
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=76.61 E-value=46 Score=28.59 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRL 160 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~L 160 (235)
.+++.+++.|+.+...|.++|+.+-.+..+++.+...+
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777666666666665443
No 247
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=76.58 E-value=21 Score=34.60 Aligned_cols=51 Identities=31% Similarity=0.521 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKE----------LKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~e----------Lk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
++|+.+++.|+.+...+..+|.. |+.+..+|+++...|+.++..++.++..
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444443 4444444555555555555555555555
No 248
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=76.54 E-value=27 Score=26.87 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 149 EKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
...+|=.|.+.|..|+-+||++|-.+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777776654
No 249
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=76.43 E-value=16 Score=28.58 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
++++++++++|.++|++|..++...
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~ 49 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVA 49 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 250
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.36 E-value=10 Score=34.18 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
..|+++++....+.+.+..++..|+.+.+.++.+
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 3333344444333344444444444444444433
No 251
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=76.26 E-value=26 Score=29.78 Aligned_cols=8 Identities=38% Similarity=0.252 Sum_probs=3.2
Q ss_pred HHHHHHhc
Q 026646 93 RFLELGSM 100 (235)
Q Consensus 93 ~F~eLrsl 100 (235)
.|.+|++=
T Consensus 59 ~~~eLr~e 66 (177)
T PF07798_consen 59 AIAELRSE 66 (177)
T ss_pred HHHHHHHH
Confidence 34444433
No 252
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=76.20 E-value=28 Score=30.51 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=31.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
||. .|..+-.-++.++.++..|+-+++.|.+....|..|.++|.+
T Consensus 84 dK~-~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 84 DKQ-SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 455566666677777777777777777777777777777664
No 253
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=76.20 E-value=20 Score=33.30 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=32.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+|-.||. .-++.|+.++..+..+...++.. ..++....|+..+...|+.+.+.|+++++.
T Consensus 167 d~rnq~l~---~~i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~l~~el~~ 227 (264)
T PF07246_consen 167 DRRNQILS---HEISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKWLEHELSD 227 (264)
T ss_pred hhHHHHHH---HHHHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 45556654 44666777776666654344322 333444444544444455555555555553
No 254
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.19 E-value=29 Score=37.97 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------
Q 026646 85 LRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ------ 158 (235)
Q Consensus 85 rRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~------ 158 (235)
.+.+.++..+..+..-.- .+=.+=+...-+=+++|+.+|++|+..+.+|.+++++++.+..+-++|+.
T Consensus 372 ~~~d~l~k~I~~~~~~~~------~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i 445 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTN------NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEI 445 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555555554441 11122344555566677777777777777777776666655544444444
Q ss_pred -HHHHHHHHHHHHHHhc
Q 026646 159 -RLKADKEKLEQQVKAM 174 (235)
Q Consensus 159 -~Lk~e~e~le~qlk~~ 174 (235)
.|+..|+....+|+.+
T Consensus 446 ~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 446 LQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4455555555555553
No 255
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=76.09 E-value=24 Score=34.39 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
.||+-|..|.++--.- .....+..+|..|-.....++.-...|.+....+..+|+..-.+.|.|-++...|..+|-+
T Consensus 108 ~l~~ff~a~~~la~~P-~~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 184 (456)
T PRK07191 108 GLNNFFSALSAATQLP-DSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILK 184 (456)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666554311 1456788889998888888887777777766666667766667777777666666666644
No 256
>PRK00295 hypothetical protein; Provisional
Probab=76.03 E-value=14 Score=27.18 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
-|.+|+.++.-++...+.|...+-....++..|+.+...|...+..++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478888888888888888888888888888888888888877666665
No 257
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=75.95 E-value=13 Score=29.28 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=29.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRL 160 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~L 160 (235)
--|++.|.+. |=..-+.++.+|+.++..|..++..|+.+.+--|.|+..|
T Consensus 33 E~KV~~LKks--Ye~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 33 ETKVKALKKS--YEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666543 3344555666666666666666666666666555555544
No 258
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.88 E-value=14 Score=40.01 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 026646 122 MEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L 139 (235)
+++|.++..+|++.+-+|
T Consensus 370 fkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777777555444
No 259
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=75.72 E-value=26 Score=34.38 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCC-CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLE-PGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 89 kINd~F~eLrslLP-~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
.|++-|..|.++-- |. ...-+..+|+.|-.....++.-...|+.....+.++|+..-.+.|.|-++...|..+|-+
T Consensus 103 ~l~~ff~a~~~la~~P~--~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 179 (483)
T PRK07521 103 RLSDFQAALQTAASSPD--NTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVS 179 (483)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555532 11 455688899999888888888777777776667777777767777777666666666644
No 260
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=75.69 E-value=17 Score=35.31 Aligned_cols=29 Identities=41% Similarity=0.536 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 139 LQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 139 L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
|.+++++|+.++.+|.++...++.++..+
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 261
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=75.67 E-value=48 Score=27.97 Aligned_cols=81 Identities=23% Similarity=0.459 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMME-QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk-~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
.|++.|..|..++..+ . .....+.++++-|. ++...+...-.-...++..++.++.|...|++-+..+++.+++|
T Consensus 5 el~~~~~~l~~~~e~~--~--~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~L 80 (162)
T PF05565_consen 5 ELTDEYLELLELLEEG--D--LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRL 80 (162)
T ss_pred HHHHHHHHHHHHHhcC--C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999888754 2 33345556655532 23334444444455666666777777777777666666666666
Q ss_pred HHHHHh
Q 026646 168 EQQVKA 173 (235)
Q Consensus 168 e~qlk~ 173 (235)
.+-|..
T Consensus 81 k~yL~~ 86 (162)
T PF05565_consen 81 KEYLLD 86 (162)
T ss_pred HHHHHH
Confidence 655444
No 262
>PRK14011 prefoldin subunit alpha; Provisional
Probab=75.52 E-value=20 Score=30.24 Aligned_cols=52 Identities=23% Similarity=0.415 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+.+|++|+ +++++.|++...+|...++++..+.++++.+. ......++++.+
T Consensus 86 ~~eA~~~~---~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L---~~k~~~~~~~~~ 137 (144)
T PRK14011 86 VSEVIEDF---KKSVEELDKTKKEGNKKIEELNKEITKLRKEL---EKRAQAIEQRQA 137 (144)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 67777775 46888888888888888988888888888653 333444444433
No 263
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.52 E-value=14 Score=33.40 Aligned_cols=56 Identities=25% Similarity=0.456 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
|-.-+..|+.+......+...|..++.++..++..|.++......+.++|+.+|..
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555556666777777777777777777777666666666666554
No 264
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.39 E-value=17 Score=38.06 Aligned_cols=10 Identities=20% Similarity=0.591 Sum_probs=4.7
Q ss_pred hHHHHHHHHH
Q 026646 113 TILSDAVQMM 122 (235)
Q Consensus 113 sIL~dAIeYI 122 (235)
.|+..|-+++
T Consensus 502 ~ii~~A~~~~ 511 (782)
T PRK00409 502 NIIEEAKKLI 511 (782)
T ss_pred HHHHHHHHHH
Confidence 3455555444
No 265
>PRK02224 chromosome segregation protein; Provisional
Probab=75.35 E-value=29 Score=35.90 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSN 136 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~ 136 (235)
|.++.+-+..|+.++..|+...
T Consensus 532 le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 532 IEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444433
No 266
>PRK00846 hypothetical protein; Provisional
Probab=75.33 E-value=22 Score=27.22 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
-..|.+|+.++.-.+...+.|...+-.....+..|+.....|...+..++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777777777777777777776676777777766666665555544
No 267
>PRK00736 hypothetical protein; Provisional
Probab=75.29 E-value=28 Score=25.67 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
+.|.+|+.++.-++...+.|...+-.-..++..|+.+...|...+...+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788888888888888888888777777778888777777666655543
No 268
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.05 E-value=14 Score=41.51 Aligned_cols=95 Identities=16% Similarity=0.313 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 84 KLRRDRLNERFLELGSMLEPGRP-PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 84 RrRRekINd~F~eLrslLP~~~~-~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
+.++..++.+...|..++---.. .=.|-+.+|.+.-+...+|+.++++++++..++.++.++.+.+.+++..+...++.
T Consensus 948 ~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slks 1027 (1486)
T PRK04863 948 QQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKS 1027 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999998853100 23566778888888999999999999888888888888888777777666555555
Q ss_pred HHH-------HHHHHHHhccCCC
Q 026646 163 DKE-------KLEQQVKAMSAPS 178 (235)
Q Consensus 163 e~e-------~le~qlk~~~~~p 178 (235)
.+. .+++.|..++++.
T Consensus 1028 slq~~~e~L~E~eqe~~~~g~~~ 1050 (1486)
T PRK04863 1028 SYDAKRQMLQELKQELQDLGVPA 1050 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 544 4445555565543
No 269
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=74.97 E-value=27 Score=35.65 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCC-CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 90 LNERFLELGSMLE-PGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 90 INd~F~eLrslLP-~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
|++-|..|..+-- |. .-.-+..+|..|-....+++.-...|+.....+..+|+..-.+.|.|-++...|..+|-+
T Consensus 121 l~~ff~al~~ls~~P~--~~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 121 LDDFWDSWQDLSNYPE--GLAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554431 12 456688899998888888887777777766666666666666777776666666666644
No 270
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.93 E-value=18 Score=36.21 Aligned_cols=21 Identities=10% Similarity=0.174 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026646 153 LRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk~ 173 (235)
+.+.+..+..+|..|+.||+-
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344445666777788888876
No 271
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=74.91 E-value=29 Score=36.04 Aligned_cols=49 Identities=24% Similarity=0.378 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
-..+..++.++..++.++..++.++..|..+...++.+...++..++.+
T Consensus 439 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l 487 (1179)
T TIGR02168 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554444455555555555555555544444444333
No 272
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=74.89 E-value=18 Score=27.47 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRL 160 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~L 160 (235)
+..+...+..++.+++.+...|..|...|+-|.+.|
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555
No 273
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=74.70 E-value=24 Score=36.55 Aligned_cols=77 Identities=14% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
.|++-|..|.++--.- ..-..+..+|..|-..+.+++.-...|.+....+..+|+..-.+.|.|-++...|..+|.+
T Consensus 108 ~L~~Ff~alq~la~~P-~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~ 184 (676)
T PRK05683 108 ALQRFFTALQTAAANP-TDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQ 184 (676)
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443211 1456688889999888888888877887777777777777777777777777777766654
No 274
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=74.67 E-value=12 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026646 156 EKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 156 E~~~Lk~e~e~le~qlk~ 173 (235)
|+..|+.+++--+.|++.
T Consensus 247 el~Sle~q~~~s~~qldk 264 (447)
T KOG2751|consen 247 ELDSLEAQIEYSQAQLDK 264 (447)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444566666666666665
No 275
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=74.62 E-value=20 Score=33.77 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKL 132 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L 132 (235)
|++|=..|-+-.++|
T Consensus 50 A~~fA~~ld~~~~kl 64 (301)
T PF06120_consen 50 AIEFADSLDELKEKL 64 (301)
T ss_pred HHHHHHhhHHHHHHH
Confidence 444444443333333
No 276
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=74.62 E-value=39 Score=26.45 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
++.-.+-++-.+.=++.++++++++|+.+++.|+.|+.--.
T Consensus 10 ~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~ 50 (87)
T PF10883_consen 10 VGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAE 50 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777888999998888888888877775443
No 277
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.57 E-value=17 Score=36.18 Aligned_cols=37 Identities=38% Similarity=0.470 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+++.++..++.|..|..+||...+.||+.+++|....
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4566777788888888889998888888888876554
No 278
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=74.56 E-value=37 Score=30.29 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNEL----RDEKQRLKADK 164 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL----r~E~~~Lk~e~ 164 (235)
.+-.+|..++.+|.. -|.+--+.-..+-+|+..|+.+.++.+.-...-.+++.....++.++ ..|...|++.+
T Consensus 94 dl~~ryek~K~vi~~---~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~l 170 (207)
T PF05010_consen 94 DLHKRYEKQKEVIEG---YKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASL 170 (207)
T ss_pred HHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344456666666642 35565555566668888888877776655544445554444444444 44666777777
Q ss_pred HHHHHHHHhc
Q 026646 165 EKLEQQVKAM 174 (235)
Q Consensus 165 e~le~qlk~~ 174 (235)
.+.+-++.++
T Consensus 171 kk~e~~~~SL 180 (207)
T PF05010_consen 171 KKEEMKVQSL 180 (207)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 279
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.38 E-value=16 Score=33.00 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
|..+...+..+|..|..++..-..|...|+.+...
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443333444444433333
No 280
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=74.16 E-value=31 Score=25.07 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLK-QSNENLQEKIKELKAEK 150 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~-~e~~~L~~ei~eLk~Ek 150 (235)
|.+|-+.|+++.-++..+- .....+..+++..+.+.
T Consensus 34 l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l 70 (79)
T PF05008_consen 34 LDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSEL 70 (79)
T ss_dssp HHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544443 23334444444443333
No 281
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.08 E-value=31 Score=35.33 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=5.8
Q ss_pred eeccccccCC
Q 026646 13 IDYSIVDDIP 22 (235)
Q Consensus 13 ~d~~~~~~~~ 22 (235)
+-|||.+.|.
T Consensus 137 L~YPf~~siS 146 (581)
T KOG0995|consen 137 LKYPFLLSIS 146 (581)
T ss_pred CCCCcccchh
Confidence 4577766543
No 282
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=74.08 E-value=25 Score=25.76 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
+.+++.+++.++.+.++++.+..+|+.|.+.|.+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555566666666666666666666655544
No 283
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.35 E-value=41 Score=27.16 Aligned_cols=32 Identities=16% Similarity=0.420 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
|...+..+..|+++++.+......|..+++++
T Consensus 9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665555555444443
No 284
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=73.24 E-value=20 Score=27.74 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 026646 124 QLRTEAQKLK 133 (235)
Q Consensus 124 ~Lq~qv~~L~ 133 (235)
+|...+..|+
T Consensus 12 rL~~aid~LE 21 (89)
T PF13747_consen 12 RLEAAIDRLE 21 (89)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 285
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.09 E-value=43 Score=26.29 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
+...+..+.+|+++++.+......|..++++.+.
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~ 38 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEK 38 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777766666666655555444433
No 286
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=72.99 E-value=17 Score=30.82 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
..+||+| |+.++++|++..+++++.+.+|......++.+.+.+-.
T Consensus 92 ~~eAie~---l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 92 ADEAIEF---LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666 45788999999999999999999888888877776643
No 287
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=72.92 E-value=23 Score=33.79 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 111 KATILSDAVQMMEQLRTEAQKLKQSN-EN----LQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 111 KasIL~dAIeYIk~Lq~qv~~L~~e~-~~----L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
-+.|.++.|+-.-+|+.+.+++-+.. .. -+.++.++-..+.|||.|..+|+.++..|+.+
T Consensus 254 fak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 254 NAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34566666776677776666554432 22 26778888888888888888888887776643
No 288
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=72.79 E-value=35 Score=29.95 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..+..|+.++..++....+|...+..|+.++.+++.....|.+.....+.+.+.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~ 152 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDV 152 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555566666666666666665555555555555554443
No 289
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.74 E-value=18 Score=40.16 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=16.6
Q ss_pred HHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 026646 96 ELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLK 133 (235)
Q Consensus 96 eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~ 133 (235)
-|++-||+. . ..-..-|.++++-+.+++..++.|+
T Consensus 209 ~l~~~l~~l--~-~~~i~~l~e~~~~~~~~~~~le~l~ 243 (1353)
T TIGR02680 209 ALTEALPPL--D-DDELTDVADALEQLDEYRDELERLE 243 (1353)
T ss_pred HHHHhCCCC--C-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445543 1 2235555555555555555544444
No 290
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=72.72 E-value=12 Score=38.18 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 111 KATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 111 KasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
+-+|.+.=-+||+++-.+++.|+.+|+.+..++++++.+...++.
T Consensus 361 ~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 361 SNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777788877777777777776655544443
No 291
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=72.69 E-value=34 Score=25.02 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRT 127 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~ 127 (235)
-+.||+++.++++-.|. ...+++.|| -|+.+..++..
T Consensus 27 a~~i~~~i~~~~~~~~~---~~~~~~~vl-aaLnla~e~~~ 63 (89)
T PF05164_consen 27 AELINEKINEIKKKYPK---LSPERLAVL-AALNLADELLK 63 (89)
T ss_dssp HHHHHHHHHHHCTTCCT---SSHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---CCHHHHHHH-HHHHHHHHHHH
Confidence 46899999999998763 346666666 45555554443
No 292
>PF14645 Chibby: Chibby family
Probab=72.69 E-value=14 Score=29.96 Aligned_cols=44 Identities=30% Similarity=0.376 Sum_probs=24.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
..++|++++.+|++|.+.|+-+..-|-|=.+...+|..-++.+|
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555556666666666665555555555555555555554
No 293
>PRK10869 recombination and repair protein; Provisional
Probab=72.57 E-value=40 Score=33.81 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 85 LRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQ---SNENLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 85 rRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~---e~~~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
.|=+.|++|+..|..|-= |-. .=+.+.+.|..+++++.+.|+. ..+.|+.++..++.+..++..+.+..+
T Consensus 296 ~~l~~ie~Rl~~l~~L~r-----Kyg--~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R 368 (553)
T PRK10869 296 NRLAELEQRLSKQISLAR-----KHH--VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSR 368 (553)
T ss_pred HHHHHHHHHHHHHHHHHH-----HhC--CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788888777652 222 2478899999999999888775 567788888888888777777666444
Q ss_pred HH-----HHHHHHHHHhccCC
Q 026646 162 AD-----KEKLEQQVKAMSAP 177 (235)
Q Consensus 162 ~e-----~e~le~qlk~~~~~ 177 (235)
.+ .+.+..+|+.++.+
T Consensus 369 ~~aA~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 369 QRYAKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 43 23455666666654
No 294
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=72.51 E-value=35 Score=33.90 Aligned_cols=77 Identities=13% Similarity=0.272 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
.|++-|..|..+.-.- .....+..+|..|-..+..++.-...|......+.++|+..-.+.|.|-++...|..+|-+
T Consensus 109 ~l~~ff~a~~~ls~~P-~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 109 TMQDFFTSLQTLVSNA-EDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555553211 1456688899999888888888777777777777777777777777777777766666644
No 295
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=72.51 E-value=28 Score=25.45 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
++++++.+++.....+.+.+..|+.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~ 27 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444444433
No 296
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=72.41 E-value=34 Score=31.77 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLK-------ADKEKLEQQVKA 173 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk-------~e~e~le~qlk~ 173 (235)
+..-|.++++++..+..+...|..+|+.-+.|..-.+.....|+ .|-|+||.+|+.
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555544444444333 355566666554
No 297
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=72.25 E-value=20 Score=33.78 Aligned_cols=61 Identities=16% Similarity=0.399 Sum_probs=29.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIK-------ELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~-------eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+|.+.+-. |.-|+..+..|++.+..++.+++ .+|.....|+.|...|+.++......|+.
T Consensus 105 Nek~~l~yq----vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 105 NEKSALMYQ----VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554432 33344455555555444444433 33333344555555555555555555554
No 298
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=72.10 E-value=27 Score=33.78 Aligned_cols=33 Identities=30% Similarity=0.579 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 142 KIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 142 ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
..+.++..+.+|.++...|+.++..|+.+|...
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555666666666667777777777654
No 299
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=72.09 E-value=10 Score=35.32 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026646 146 LKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 178 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p 178 (235)
|+.++.+++.|...++.++++++.+|+.+..+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (364)
T TIGR01242 11 LEDEKRSLEKEKIRLERELERLRSEIERLRSPP 43 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333333334444445566666666666665554
No 300
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=72.08 E-value=23 Score=31.62 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 124 QLRTEAQKLKQSNENLQEKIKEL--KAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eL--k~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+++.+++.|+.+.++|++-++.- ..+.-+++.|....+.|||.++.|++.
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444322111 112224444555555555555555555
No 301
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=71.92 E-value=11 Score=28.49 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCCCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRP--PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~--~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
.+.....+|..+=+. +. ...+++=|+.+.-+++..|..+.+.++.+...|..+++++..+.++++.
T Consensus 30 ~~~~~~~eL~~l~~~-~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 30 ELELTLEELEKLDDD-RKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHTSSTT--EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc-chhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788875443 11 2345555666666666667777777777666666666666555555443
No 302
>PLN02678 seryl-tRNA synthetase
Probab=71.90 E-value=23 Score=34.97 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 145 ELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 145 eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+|..+..+|.+|...|..+...++.+|..
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555
No 303
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=71.85 E-value=21 Score=33.07 Aligned_cols=31 Identities=23% Similarity=0.054 Sum_probs=14.5
Q ss_pred CCCCCCCCCch---hhhhhhhhc-CCccccccCCC
Q 026646 179 GFLPHPSSMSA---AFAAQSQVA-GNKLVPFIGYP 209 (235)
Q Consensus 179 ~~~p~~~~~p~---~~~~~~qa~-~~k~~p~~~~p 209 (235)
.|+|+.|+.|+ |++|+.|-. |+.-||-++=|
T Consensus 190 t~~PP~Ps~~~~aaaaaAa~ql~~~~~a~~~p~~~ 224 (286)
T KOG4451|consen 190 TTDPPTPSVPRVAAAAAAALQLLLNNAAMQQPSGS 224 (286)
T ss_pred cCCCCCCCccchhhhHHHHHHHhccccccCCCCCC
Confidence 46777555543 333333433 44445544433
No 304
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.47 E-value=21 Score=36.19 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
..-.+.+.+++.++.+++.+...++++++.++.+..+++
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555444444444444444444333
No 305
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=71.27 E-value=19 Score=27.96 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
+.+|++|++ .+++.|++..+.++.++++++.+.+.++...+
T Consensus 75 ~~eA~~~l~---~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 75 LEEAIEFLK---KRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888765 56666666666666666666666655554433
No 306
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=71.23 E-value=41 Score=25.21 Aligned_cols=52 Identities=13% Similarity=0.288 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
|.+.-+-++++.+.++.++++...+..++..+-.+-|++-++........+.
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344455666666666666666666666666666666665544443333333
No 307
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=71.20 E-value=37 Score=34.65 Aligned_cols=76 Identities=13% Similarity=0.271 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCC-CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLE-PGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 89 kINd~F~eLrslLP-~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
.|++-|..|.++-- |. ...-+..+|..|-.....++.-...|+.....+..+|+..-.+.|.|-++...|..+|.+
T Consensus 113 ~l~~ff~al~~ls~~P~--~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~ 189 (613)
T PRK08471 113 DLQDYFNAWNDFASNPK--DSAQKQALAQKTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKE 189 (613)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34544555554432 11 345678888888877777777777777666666666666666666666666666655543
No 308
>PLN02678 seryl-tRNA synthetase
Probab=71.15 E-value=34 Score=33.84 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026646 153 LRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk~ 173 (235)
|..+...|+.++..++.+++.
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~ 96 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQE 96 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 309
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=71.15 E-value=26 Score=31.01 Aligned_cols=51 Identities=25% Similarity=0.398 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
..+|-+.+..+...|..++..|-.+...|...+..|.+.+..|+.+..-++
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e 204 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLE 204 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888999999999999999999999999999999999999887765
No 310
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=71.05 E-value=26 Score=33.90 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026646 152 ELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.++.....|..++..|+.+++.
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~ 400 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKE 400 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 311
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=70.81 E-value=41 Score=26.38 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
......++..|..+...|++++.+++..|..
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777765
No 312
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=70.80 E-value=17 Score=29.68 Aligned_cols=44 Identities=18% Similarity=0.434 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
.|..+|+.+..+.+++..++.+|..+++.| .++..+++|++.|+
T Consensus 39 ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l-------------------~veRkmr~Les~p~ 82 (109)
T PF11690_consen 39 EAYDFIDKVVDQHQRYCDERRKLRKKIQDL-------------------RVERKMRALESHPF 82 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhccCChH
Confidence 466777777777777777766666555444 23666777777663
No 313
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=70.65 E-value=37 Score=28.05 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 121 MMEQLRTEAQKLKQSNENL-------QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L-------~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.|+.||.+=.+++.+...+ +.+|..|.-|..-++.=+..|...|.-||..|+.
T Consensus 5 Vl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 5 VLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788777777655444 4445555555444444455777777777777766
No 314
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.57 E-value=25 Score=25.71 Aligned_cols=40 Identities=10% Similarity=0.263 Sum_probs=21.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 134 QSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 134 ~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.++.+.+.....+.....+-...+..|..++++|+.+++.
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444445555566666666666666643
No 315
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.55 E-value=20 Score=33.04 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
.|+.++..+++...+|+.+++.+....+..+.+-..-.+.+|+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 5566666666666666666666666666665333333333333
No 316
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=70.54 E-value=6.7 Score=30.09 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026646 152 ELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+|++|+.+||.++.+|+.+|..
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 317
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=70.41 E-value=20 Score=28.97 Aligned_cols=36 Identities=39% Similarity=0.521 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
.++.+|+.+.+.|+.+.+.|...+..|.....+++.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777766666666666666655555543
No 318
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=70.36 E-value=24 Score=29.89 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=38.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+++++|+.++..+++.|+.-+....||......+++=+.|-++--..
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~ 47 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLEQS 47 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36788888888889999888888889988888888888877666555
No 319
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=70.31 E-value=54 Score=32.39 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 149 EKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~le~qlk 172 (235)
||.-||.|+..|..|.|..+.++.
T Consensus 350 EKaaLrkerd~L~keLeekkrele 373 (442)
T PF06637_consen 350 EKAALRKERDSLAKELEEKKRELE 373 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555555555444443
No 320
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=70.30 E-value=53 Score=31.87 Aligned_cols=91 Identities=25% Similarity=0.369 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HH-HHHHHHHHHHH
Q 026646 88 DRLNERFLELGSMLEPGRP-PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKA----EK-NELRDEKQRLK 161 (235)
Q Consensus 88 ekINd~F~eLrslLP~~~~-~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~----Ek-nELr~E~~~Lk 161 (235)
+.|-++|.+|..+|-.... .-.++..-|.+-..+|..+-....++++-.+.|..--.-|.. |. ....+|...++
T Consensus 10 ~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~ 89 (363)
T COG0216 10 ESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELE 89 (363)
T ss_pred HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4567789999988853210 233455555555555555544444444433333221111211 22 23567889999
Q ss_pred HHHHHHHHHHHhccCCC
Q 026646 162 ADKEKLEQQVKAMSAPS 178 (235)
Q Consensus 162 ~e~e~le~qlk~~~~~p 178 (235)
.+++.|+.+|+.+=.|+
T Consensus 90 ~~~~~le~~L~~lLlPk 106 (363)
T COG0216 90 AKIEELEEELKILLLPK 106 (363)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999875543
No 321
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=70.24 E-value=72 Score=27.63 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 026646 88 DRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKN-ELRDEKQRLKADKEK 166 (235)
Q Consensus 88 ekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ekn-ELr~E~~~Lk~e~e~ 166 (235)
+.|++++.....-++.-...=-.-.-+++++-+-|.+|...++.|....+.+.+++.-++.+.. +++-+...|..++++
T Consensus 47 d~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~e 126 (157)
T COG3352 47 DAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNE 126 (157)
T ss_pred HHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHH
Confidence 3456666666665552110001112256777777778888888887777776666555544433 344456666666666
Q ss_pred HHHHHHh
Q 026646 167 LEQQVKA 173 (235)
Q Consensus 167 le~qlk~ 173 (235)
+...+..
T Consensus 127 l~~i~em 133 (157)
T COG3352 127 LKMIVEM 133 (157)
T ss_pred HHHHHHH
Confidence 6665554
No 322
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.19 E-value=23 Score=37.16 Aligned_cols=82 Identities=28% Similarity=0.363 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHH
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKA-------EKNELRDEKQR 159 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~-------EknELr~E~~~ 159 (235)
-..++.++.+|..=+-..+..-...-+=...-...+.+|+...+.++.+...|+.+|+++|. ++.||.+||-.
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis 108 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS 108 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34455555555554422211001111222333344555666667777777777777777664 55677777777
Q ss_pred HHHHHHHHH
Q 026646 160 LKADKEKLE 168 (235)
Q Consensus 160 Lk~e~e~le 168 (235)
|..++--|.
T Consensus 109 lQKqvs~Lk 117 (717)
T PF09730_consen 109 LQKQVSVLK 117 (717)
T ss_pred HHHHHHHHH
Confidence 776666653
No 323
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.03 E-value=23 Score=35.29 Aligned_cols=52 Identities=31% Similarity=0.373 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..|+-+++.|+.++..|+..+..|+.-..+|..|.+++-.++|-+..||..
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~ 350 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 4446667788888999999999888888888888888777777766655544
No 324
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.01 E-value=42 Score=28.39 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 026646 152 ELRDEKQRLKADKE 165 (235)
Q Consensus 152 ELr~E~~~Lk~e~e 165 (235)
+|+.+...|+++.+
T Consensus 55 eLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 55 ELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 325
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.00 E-value=62 Score=32.83 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
++.+...++.+.+.+..++..++.
T Consensus 440 ~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 440 SEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333
No 326
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.77 E-value=26 Score=32.95 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
|.-+|.-|+..++.+++.+.+|..+..+...+..++|..+..|+.++
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~ 156 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREEL 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666666666666666665544444444444444444333
No 327
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.58 E-value=68 Score=35.39 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.--..+.+++.+...++.+...+..+++.|..+.+++..+...|.++++..+.++..
T Consensus 309 ~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~ 365 (1311)
T TIGR00606 309 NHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRA 365 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446666777777777777777777788877777777777777777766666555
No 328
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.54 E-value=68 Score=32.22 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~ 157 (235)
+++.+++.+..|++++++++
T Consensus 386 q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 386 QLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 329
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.32 E-value=13 Score=30.31 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCC
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM-SAPSGFL 181 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~-~~~p~~~ 181 (235)
|++.-.+.+++..+|-.+.-+|+..+..|.+...-..+|+..|++|..-|-|-|+.+ ++..-|.
T Consensus 47 a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQ 111 (120)
T KOG3650|consen 47 AVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQ 111 (120)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhh
Confidence 445555666777888888888999999999999999999999999999888888874 3333343
No 330
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.30 E-value=66 Score=34.65 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 026646 119 VQMMEQLRTEAQKLKQSNE 137 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~ 137 (235)
|--|.+|+++++++++.+.
T Consensus 485 isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345556665555554443
No 331
>PRK10698 phage shock protein PspA; Provisional
Probab=69.30 E-value=46 Score=29.62 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..-+..|+.+.+..+....+|+..+..|+..+.+++..+..|.+....-+.+.+.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666777777777777777776666666665555555444
No 332
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=69.24 E-value=18 Score=33.46 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
+.+.+...++|..+.+.|+.++.++.+ +..+.+.|++||.+|+...
T Consensus 61 ~~~~~~~~~~~~~en~~Lk~~l~~~~~----~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 61 VLEFLKSLKDLALENEELKKELAELEQ----LLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
No 333
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.17 E-value=35 Score=36.56 Aligned_cols=72 Identities=31% Similarity=0.364 Sum_probs=44.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 108 KTDKATILSDAVQMMEQLRTEAQKLKQSN-------ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 108 K~dKasIL~dAIeYIk~Lq~qv~~L~~e~-------~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
+++--.+=.-|-.|+.+|...+++++... +.+++..++|+.|..+|.++.+....++-.|..|+.-+-..=|
T Consensus 638 ~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 638 KTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445556677777777766666544 4555555666666666666666666666667777666655545
No 334
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=69.15 E-value=23 Score=35.45 Aligned_cols=44 Identities=32% Similarity=0.513 Sum_probs=23.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 130 QKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.++......+.+++.++..+..+++.....|.++...|+.++++
T Consensus 449 ~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 449 EKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555566666654
No 335
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=69.08 E-value=31 Score=27.01 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKAD 163 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e 163 (235)
=|.+|..+|+.|+....++.++++.++.....-.+|=.+-...
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~R 67 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTR 67 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777766666655544444444333
No 336
>PRK15396 murein lipoprotein; Provisional
Probab=69.03 E-value=30 Score=26.53 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=35.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.++++|..+...|..++..+..+.+.+|...+.-+.|-+|-.+-|..
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888888888888777777777766665543
No 337
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=68.97 E-value=11 Score=35.06 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
++++|+++++++..|.++++.|...++.+++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444555555555555555555443
No 338
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=68.94 E-value=31 Score=34.38 Aligned_cols=43 Identities=28% Similarity=0.432 Sum_probs=20.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc
Q 026646 132 LKQSNENLQEKIKELKAEKNELRD-------EKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~-------E~~~Lk~e~e~le~qlk~~ 174 (235)
|....+.|+.++...+.+.+.|++ ....|..++.++..+|.+.
T Consensus 307 L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 333333444444444444444433 3445666666666666553
No 339
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=68.79 E-value=13 Score=35.98 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.|.-.|++||.+|+.|+.+|+.|...| |...|++.+..-.+-+.+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~s~V~E~vet~dv 76 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERL--ENEMLRSHVCEDVETNDV 76 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhhhhhhhHHHHHHH
No 340
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.72 E-value=14 Score=37.06 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
.+|+.++..|.+.|++|.+.++ ..+.++++|..||..++.||.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~--------------~~~~~~~~~~~~~~~~~~p~~ 46 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLK--------------AARDKLSKLKSQLEQLAQPPS 46 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhcCCCc
Confidence 3455666666666655544433 334667777788888888874
No 341
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=68.68 E-value=61 Score=26.17 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=27.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 129 AQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 129 v~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
...|+..+..-...++.+..|..-|.=.|..|-..++.|+.+|...
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455555555555556677777777777777743
No 342
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.59 E-value=11 Score=40.25 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=32.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 134 QSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 134 ~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
...+....+|.+|++++.|+.+-+..|--|+..|++|||.+.+
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 3334444567778888888888888888888888999888654
No 343
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=68.52 E-value=52 Score=25.31 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
+.|+--++|+..+...++|+++|..-+..|+.+.-.+-+-+..|..+...++.
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888888888888888888887777777777777776666665
No 344
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=68.19 E-value=35 Score=28.01 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=32.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
+||-.|... |-.|.+++-.|-.+...|++.+.+|-.|..-||=||..|+..+-.
T Consensus 1 mdKkeiFd~----v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 1 MDKKEIFDQ----VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred CCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 456666543 344566666666666666666666666666666666666654444
No 345
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.10 E-value=38 Score=28.89 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 144 KELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 144 ~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+.++.|..+|++|....+.+++.|..|.+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555556666666554
No 346
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.10 E-value=41 Score=31.77 Aligned_cols=36 Identities=31% Similarity=0.649 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
..+.+++++|+.+.+++-++...||.+.+.+...+.
T Consensus 51 rE~~e~~~elr~~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 51 RELREKAQELREERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555554444433
No 347
>PLN02320 seryl-tRNA synthetase
Probab=68.08 E-value=41 Score=33.83 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 123 EQLRTEAQKLKQSNENLQEKI---------KELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei---------~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
++|+.+++.|+.+...+..+| ++|+.+..+|+++...|+.+...++.+|..
T Consensus 103 r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666665554444433 344455556666666666666666666665
No 348
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.02 E-value=52 Score=25.10 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
..|.+++.+|+....-....|.+|....-|.+-...++......|-..|+.+.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677777777777666666777777777777677777777777777777653
No 349
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=67.88 E-value=33 Score=32.27 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHH
Q 026646 85 LRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKE----LKAEKNELRDEKQRL 160 (235)
Q Consensus 85 rRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~e----Lk~EknELr~E~~~L 160 (235)
.-|+.+|+ |.+-+.-|... =-+-|..+-...++|+.++++|..+.+.+.++.+. --+....|+++++.+
T Consensus 31 ~~reEl~E-FQegSrE~Eae------lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt 103 (333)
T KOG1853|consen 31 QMREELNE-FQEGSREIEAE------LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQT 103 (333)
T ss_pred HHHHHHHH-HhhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665 54444333211 11335555566666777777776666555544322 122345577777777
Q ss_pred HHHHHHHHHHHHh
Q 026646 161 KADKEKLEQQVKA 173 (235)
Q Consensus 161 k~e~e~le~qlk~ 173 (235)
++.++.|..-|+.
T Consensus 104 ~aikeql~kyiRe 116 (333)
T KOG1853|consen 104 HAIKEQLRKYIRE 116 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 7666665554443
No 350
>PRK14127 cell division protein GpsB; Provisional
Probab=67.59 E-value=13 Score=30.14 Aligned_cols=36 Identities=28% Similarity=0.499 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEK 150 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ek 150 (235)
|...++-+..|..++..|+.++..|+.++.+++...
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444444444444444444433
No 351
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=67.50 E-value=40 Score=33.79 Aligned_cols=55 Identities=20% Similarity=0.409 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+|+.+|-..+++.....+++...+..|.....+++++...+.-.++.|-++-+.+
T Consensus 432 rYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~L 486 (507)
T PF05600_consen 432 RYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTREL 486 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444444444444444555566666666666677777777776666666655543
No 352
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=67.40 E-value=29 Score=32.95 Aligned_cols=17 Identities=35% Similarity=0.304 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026646 82 REKLRRDRLNERFLELG 98 (235)
Q Consensus 82 ~ERrRRekINd~F~eLr 98 (235)
.||.|=..|.+-+..|+
T Consensus 45 ~ek~~~~~L~~e~~~lr 61 (310)
T PF09755_consen 45 TEKARCKHLQEENRALR 61 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555444444444444
No 353
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.36 E-value=54 Score=25.43 Aligned_cols=46 Identities=11% Similarity=0.248 Sum_probs=21.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
...+-|..+.-+.+..|..+.+.++.+...+..+++++..+.++++
T Consensus 52 VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 52 VGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred hhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555554444444444444443
No 354
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.30 E-value=12 Score=38.78 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 026646 125 LRTEAQKLK 133 (235)
Q Consensus 125 Lq~qv~~L~ 133 (235)
|..++++|+
T Consensus 423 LE~dvkkLr 431 (697)
T PF09726_consen 423 LEADVKKLR 431 (697)
T ss_pred HHHHHHHHH
Confidence 333333333
No 355
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=67.22 E-value=60 Score=27.88 Aligned_cols=57 Identities=16% Similarity=0.391 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.|+.++|+-|..=+.++=..-+ .-+.+...|+.|..+++.+....-.+.++|+..-+
T Consensus 2 ~Ii~~ti~~ie~sK~qIf~I~E---~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er 58 (159)
T PF05384_consen 2 KIIKKTIDTIESSKEQIFEIAE---QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRER 58 (159)
T ss_pred hHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888877644332 11233334444444444444444455555554433
No 356
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.09 E-value=29 Score=26.95 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
.+=+-.....-...|+...+.+..+++.+..++..+..+...++.++..++
T Consensus 54 ~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 54 NVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred hHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444455566666666666666666666666666666666665543
No 357
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=67.04 E-value=19 Score=34.01 Aligned_cols=69 Identities=25% Similarity=0.264 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 78 SKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 78 sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
.+...++.||.+++....+.|= | ..|-.=-+.+..-++.|..+.++|+.+...|..||++||+-+-|.+
T Consensus 221 ~~~~~~~~~rkr~qnk~AAtRY-----R---qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 221 YKTPEKKLRRKRQQNKAAATRY-----R---QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred CCCchHHHHHHHHHhHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667788888877744442 2 2333334555666777777777777777777777777766554443
No 358
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.91 E-value=40 Score=35.22 Aligned_cols=56 Identities=27% Similarity=0.449 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHH-----HHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 110 DKATILSDAVQMM-----EQLR-------TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 110 dKasIL~dAIeYI-----k~Lq-------~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
+-..+|.+|++.+ .++. .++..|+.+.++...++.+++.+++.|++.-..|...++
T Consensus 536 E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 536 ECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777776543 3322 233445555555555666666666666554444433333
No 359
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.89 E-value=32 Score=32.61 Aligned_cols=52 Identities=27% Similarity=0.422 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
|..|..++.+-.+++...+++|-.|..+.-+|......+-.|.|.|.+.|.+
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333444444344444555555555555555555555555555555555544
No 360
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=66.87 E-value=23 Score=38.11 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=19.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 129 AQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 129 v~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
..+|+.++..|+..|..+...+.|-.-|...+.++.+++++.|-
T Consensus 115 c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 115 CLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 33334444444444444444333333344444444455555443
No 361
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.84 E-value=29 Score=34.42 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=22.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNE 137 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~ 137 (235)
.-|+.||++.|..+..++.++..+..-..
T Consensus 268 ~~K~~iL~ekv~~~qti~~e~~~~lk~i~ 296 (446)
T KOG4438|consen 268 QEKAKILEEKVTNLQTIEKELKALLKKIS 296 (446)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 46889999999998888888766554333
No 362
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.67 E-value=20 Score=34.00 Aligned_cols=40 Identities=28% Similarity=0.523 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRL 160 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~L 160 (235)
.+..||++++.|+.+|..|+.+...|+.+...+.++-+.|
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL 200 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL 200 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH
Confidence 3567888888899999888888888776655554433333
No 363
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=66.65 E-value=28 Score=26.98 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 149 EKNELRDEKQRLKAD 163 (235)
Q Consensus 149 EknELr~E~~~Lk~e 163 (235)
.+..|..|+-.|+..
T Consensus 53 ~~d~l~~e~k~L~~~ 67 (96)
T PF08647_consen 53 SKDALDNEMKKLNTQ 67 (96)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333333333333333
No 364
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=66.57 E-value=63 Score=28.54 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..|..+-.++-..+..+...+..|+++++.
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~ 207 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQ 207 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555544
No 365
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=66.47 E-value=65 Score=31.32 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCC-CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 90 LNERFLELGSMLE-PGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 90 INd~F~eLrslLP-~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
|++-|..|.++-- |. ....+..+|..|-.....++.-...|.........+|+..-.+.|.+-++...|..+|.
T Consensus 114 l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~ 188 (431)
T PRK06799 114 MDGFFNAFREVAKNPE--QANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIG 188 (431)
T ss_pred HHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554432 11 35567888888877777777777777766666666666666667777666666666554
No 366
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=66.34 E-value=30 Score=40.06 Aligned_cols=58 Identities=33% Similarity=0.511 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..+++.+.+|+.+...|..+...|...+.++...+.||...+-.|..+++.|+.+|..
T Consensus 1480 ee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeE 1537 (1930)
T KOG0161|consen 1480 EELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEE 1537 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555444455445555555555666666666665554
No 367
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.21 E-value=65 Score=26.00 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
|+.++..-+..+.++++++..|.=....|-.....|..|++..
T Consensus 31 L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 31 LKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444433
No 368
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=66.14 E-value=46 Score=34.29 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 90 LNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 90 INd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
|++-|..|..+.-.- ..-..+..+|..|-..+.+++.--.+|.........+|+..-.+.|.|-++...|..+|.+.
T Consensus 110 L~~Ff~alq~la~~P-~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~~ 186 (651)
T PRK06945 110 ITSFFTGLQNVANNP-SDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKA 186 (651)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566666554211 13556788888888888888877777777777777777777777777777777776666543
No 369
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=65.73 E-value=56 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 145 ELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 145 eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.|...+..|......|..-++.++.-|+
T Consensus 76 ~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 76 VLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 370
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=65.69 E-value=19 Score=36.62 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
++.|..++..|+.+|..|..++..+++
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344555566666666666666655554
No 371
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=65.51 E-value=18 Score=32.42 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=24.4
Q ss_pred HHHHHHHHHHH-HHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQ-KLK---QSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 120 eYIk~Lq~qv~-~L~---~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
.|=+.|=.+.+ .|. ++|++|..+|..+..|++.|++|+..|+.-.+
T Consensus 107 ~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 107 NYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665543322 122 35566666666666666666666655544433
No 372
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=65.50 E-value=7.6 Score=33.73 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHH
Q 026646 82 REKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLR 126 (235)
Q Consensus 82 ~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq 126 (235)
.|+.|-.++|+.|.-|++++|..-..++.+---|.-+..|+..|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 588889999999999999999653333333333555555655443
No 373
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.38 E-value=46 Score=36.44 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
..-|.++.+-+.+|..++.+|+.....|.++-+.++.+..+.-.++..|+-++..|++|+.
T Consensus 257 ~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 257 IDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQIT 317 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Confidence 3446677777777777777777777777766666666666666666666666666666654
No 374
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=65.14 E-value=80 Score=26.25 Aligned_cols=66 Identities=24% Similarity=0.369 Sum_probs=40.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIK-----ELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~-----eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
..|..++..--.-+.+|..+.+.|+.+..++..+++ .+..=...+..|++.+...+..+..|++.+
T Consensus 16 ~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 16 KWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666665555544442 232233455667777777777888777764
No 375
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=65.14 E-value=11 Score=37.75 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 142 KIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 142 ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
+|++|++|..+|+++...|+..+++.|.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 4444444444444444444444444444
No 376
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.11 E-value=44 Score=27.11 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLK 133 (235)
Q Consensus 122 Ik~Lq~qv~~L~ 133 (235)
+..++.++..|+
T Consensus 68 ~~~~~~~~~~l~ 79 (132)
T PF07926_consen 68 LQELQQEINELK 79 (132)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 377
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=65.10 E-value=46 Score=32.36 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKI--------------KELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei--------------~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
-|..-.+-|.+=|.+.++|+..+++|.+++ +.|..-...+++||+.|+.+.+.+.++.+
T Consensus 86 glr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 86 GLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 344444555555555555555555554442 22333334455666666666666655553
No 378
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=65.03 E-value=68 Score=27.13 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
.+-|..|++||+.-++..+++..-+.-...|..|.+.|..|+.
T Consensus 9 E~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~Ekv 51 (134)
T PF15233_consen 9 EDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKV 51 (134)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4455556666654444444433333333344444444443333
No 379
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.01 E-value=22 Score=35.43 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L 139 (235)
....||..... +..|+.+.+.+..+...+
T Consensus 145 ~~~~lLD~~~~-~~~~~~~~~~~~~~~~~~ 173 (563)
T TIGR00634 145 EQRQLLDTFAG-ANEKVKAYRELYQAWLKA 173 (563)
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHHHHH
Confidence 34444444433 333444443333333333
No 380
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=64.79 E-value=72 Score=28.29 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 026646 160 LKADKEKLEQQ 170 (235)
Q Consensus 160 Lk~e~e~le~q 170 (235)
|..++++|+..
T Consensus 202 Le~~id~le~e 212 (237)
T PF00261_consen 202 LEKEIDRLEDE 212 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 381
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=64.75 E-value=65 Score=30.45 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=36.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+.++--|.--.+||--+..+.+..+.+-++|.+++..|+....++|......+.-+|-|..-||
T Consensus 53 tervrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~k 116 (389)
T PF06216_consen 53 TERVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVK 116 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3333333333456666666666666666666666666666666666555555555555544444
No 382
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=64.61 E-value=15 Score=28.10 Aligned_cols=11 Identities=55% Similarity=0.676 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 026646 153 LRDEKQRLKAD 163 (235)
Q Consensus 153 Lr~E~~~Lk~e 163 (235)
++++...++++
T Consensus 89 ~~~~~~~~~~~ 99 (104)
T PF13600_consen 89 LQDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 383
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=64.49 E-value=23 Score=35.16 Aligned_cols=47 Identities=28% Similarity=0.472 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+.++|+.+.++|.+++++|.++-.+|..+...+..+++++.++-..
T Consensus 183 ~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~ 229 (447)
T KOG2751|consen 183 KELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQ 229 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666777777777777777777777777777777666444
No 384
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=64.47 E-value=86 Score=31.99 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=37.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 026646 77 GSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLK 133 (235)
Q Consensus 77 ~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~ 133 (235)
..+...|-++|.+|+.-+.+-..+=-.++.+|.+|.++.+.=-..|+.|.+++...+
T Consensus 253 kAkmrleekhr~rmd~VmkEW~~ae~qaKnPKAekqalnqhFQ~~v~sLEee~a~er 309 (615)
T KOG3540|consen 253 KAKMRLEEKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKTVSSLEEEAARER 309 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888999999988887776545555777776665554444555554444433
No 385
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=64.35 E-value=28 Score=26.93 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
+.+.++-++.....|+..++.+..+..+++++...+...++++.+
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555566655655655555555555555555555443
No 386
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=64.22 E-value=67 Score=32.02 Aligned_cols=86 Identities=20% Similarity=0.354 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 85 LRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQ---SNENLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 85 rRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~---e~~~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
.|-+.|++++..+..+.- |-. .-+.+-++|+.+++.+.+.++. ..+.|+.++..++.+..++-.+....+
T Consensus 301 ~~L~ele~RL~~l~~Lkr-----Kyg--~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKR-----KYG--ASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHHH-----HhC--CCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777776552 111 2366777888888888777664 456666677777666666655555442
Q ss_pred H-----HHHHHHHHHHhccCC
Q 026646 162 A-----DKEKLEQQVKAMSAP 177 (235)
Q Consensus 162 ~-----e~e~le~qlk~~~~~ 177 (235)
. -.+.+...|+.++.+
T Consensus 374 ~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 374 RKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 2 234455566665543
No 387
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=64.18 E-value=33 Score=27.70 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
+.+|+++++ .+++.|......|...+..++.+.+++++....+..
T Consensus 92 ~~eA~~~l~---~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILD---KRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777655 456666666666666666666666666655554443
No 388
>PRK11020 hypothetical protein; Provisional
Probab=64.08 E-value=40 Score=27.87 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 026646 121 MMEQLRTEAQKLKQSN 136 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~ 136 (235)
.|.++..+++.|..++
T Consensus 32 ~i~qf~~E~~~l~k~I 47 (118)
T PRK11020 32 KYAQFEKEKATLEAEI 47 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 389
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=63.91 E-value=24 Score=26.85 Aligned_cols=31 Identities=35% Similarity=0.393 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
.+..++++++++..+|+++.+.|+.|...|.
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555555554443
No 390
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.84 E-value=55 Score=32.01 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=32.5
Q ss_pred chhhHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 026646 110 DKATILSDAVQMMEQLRT-EAQKLKQSNENLQEKIKELKAEKN-ELRDEKQRLKADKEKLE 168 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~-qv~~L~~e~~~L~~ei~eLk~Ekn-ELr~E~~~Lk~e~e~le 168 (235)
.|..-|++-+.=+.+|++ ++..|++++...++++.|.--|.. ++.+=....++.+.+||
T Consensus 258 ~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 258 YRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444433 445555555555555555554443 44545567888888888
No 391
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=63.84 E-value=60 Score=33.20 Aligned_cols=77 Identities=6% Similarity=0.168 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
.|++-|..|..+--.- ..-..+..+|..|-....+++.--..|.+....+..+|...-.+.|.|-++...|..+|..
T Consensus 108 ~l~~ff~alq~la~~P-~~~~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~ 184 (624)
T PRK12714 108 LWSNFFDSTSALSSNA-SSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGS 184 (624)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555554311 1455688888888888887777777777766666667766667777777666666666643
No 392
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=63.77 E-value=9.4 Score=38.07 Aligned_cols=47 Identities=26% Similarity=0.354 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+||..|..++..-..+|.+|+.+ ..+|..+|..|.+++.+||.++..
T Consensus 272 eYid~LE~rv~~~taeNqeL~kk-------V~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 272 EYIDGLESRVSAFTAENQELQKK-------VEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred hHHHHHhhhhhhcccCcHHHHHH-------HHHHhhccHHHHHHHHHHHHHHhh
Confidence 45555555555555555554444 455566677777888888877765
No 393
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=63.68 E-value=23 Score=28.01 Aligned_cols=35 Identities=40% Similarity=0.417 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
.+|..+.+.|+++.+.|+..+..|....++++.-+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~ 36 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAI 36 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666665555433
No 394
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=63.59 E-value=2.5 Score=33.85 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=1.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 131 KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+|+.++-.+..++..|..+.+.|+.|...|+.+.+.|+.+...
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ----------------------------------------HT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444455555555555555555666666666665554
No 395
>PRK11546 zraP zinc resistance protein; Provisional
Probab=63.11 E-value=95 Score=26.39 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENL-------QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAP 177 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L-------~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~ 177 (235)
.+-..=...||+++..-+.|+..| .++|+.|..|+..||.+... +-.++..++..-.++
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e---~r~~~~~~~~k~Gv~ 122 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDE---LRVKRDIAMAEAGIP 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCC
Confidence 333333444555444444444333 23466666666666653332 223444455443433
No 396
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=63.09 E-value=45 Score=36.59 Aligned_cols=60 Identities=25% Similarity=0.376 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
=+..-|.-+-.|..+.+.|..+.+.|+++|.++...+.+|++.--.|..|.++|+...+.
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666677777777777778777777777777777777777777777664
No 397
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=63.01 E-value=20 Score=30.40 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 123 EQLRTEAQKLKQSNE----NLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~----~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+||.+...|++... .-..+++.|...-..+.+-...|+++.|+-+++|++
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkA 112 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKA 112 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhh
Confidence 456777777776544 445567777777777777778888888888888886
No 398
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=62.94 E-value=24 Score=27.63 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=4.1
Q ss_pred HHHHHHhcC
Q 026646 93 RFLELGSML 101 (235)
Q Consensus 93 ~F~eLrslL 101 (235)
.+..|-+++
T Consensus 4 kI~rLE~~~ 12 (86)
T PF12711_consen 4 KIKRLEKLL 12 (86)
T ss_pred HHHHHHHHh
Confidence 344444444
No 399
>PLN02320 seryl-tRNA synthetase
Probab=62.88 E-value=44 Score=33.64 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.|.++.+.|+.++.+|..+...+..++..+-..|.
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iP 168 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIP 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44455555555555555555555444444444433
No 400
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.87 E-value=70 Score=28.08 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.|+.-....+.++..|+.+...+...+..|+....+|+.....+++...-|-...+.
T Consensus 89 ~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 89 AALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666666666666666665555555555555444443
No 401
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.84 E-value=33 Score=26.93 Aligned_cols=64 Identities=16% Similarity=0.279 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026646 93 RFLELGSMLEPGRP-PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDE 156 (235)
Q Consensus 93 ~F~eLrslLP~~~~-~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E 156 (235)
-+.+|..+=|...- .-...+-|..+.-+.+..|..+++.++.....|..++.+|..+..+++.+
T Consensus 39 v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 39 ALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566664432210 11334445555555556666666666666666666665555555444433
No 402
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=62.67 E-value=35 Score=32.41 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 136 NENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 136 ~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
...|.++.++|+.++..|..++...+..+..|..+|+.+
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345666777788888888888887778888877777774
No 403
>PRK11415 hypothetical protein; Provisional
Probab=62.62 E-value=45 Score=24.90 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L 139 (235)
..+..|..+-..|..+...+
T Consensus 17 ~~F~~L~~~h~~Ld~~I~~l 36 (74)
T PRK11415 17 PRFMSLFDKHNKLDHEIARK 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 404
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=62.53 E-value=15 Score=28.25 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhHHH
Q 026646 124 QLRTEAQKLKQSNENL 139 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L 139 (235)
+|+++++.|+.+...+
T Consensus 74 ~l~~~l~~l~~~~~~~ 89 (104)
T PF13600_consen 74 ELEEELEALEDELAAL 89 (104)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 405
>PRK01156 chromosome segregation protein; Provisional
Probab=62.41 E-value=50 Score=34.42 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+..+..++.+++.+...++.+++.++.++
T Consensus 213 ~~~l~~~i~~~~~el~~~~~~l~~l~~~l 241 (895)
T PRK01156 213 HSITLKEIERLSIEYNNAMDDYNNLKSAL 241 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444333
No 406
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=62.40 E-value=74 Score=25.28 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
|+.-|+.+..|...= . --++-.+.+.+||..+-....+...|-+..+.|.+++..|...|+.|..++
T Consensus 4 ~ee~ed~LnkL~npE--l---------~~sErTeaLqqlr~~~~sf~sEy~dlT~~~eKl~aek~DL~vsNskLFrQ~ 70 (97)
T PF11418_consen 4 LEEHEDILNKLGNPE--L---------TESERTEALQQLRESYTSFHSEYEDLTEALEKLTAEKEDLIVSNSKLFRQH 70 (97)
T ss_dssp HHHHHHHHHHHH-TT--S----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcc--c---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 556667666665421 1 123456677788888888888888888888888888888888888887654
No 407
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.28 E-value=88 Score=31.56 Aligned_cols=59 Identities=27% Similarity=0.396 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKE----LKAEKNELRDEKQRL------KADKEKLEQQVKA 173 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~e----Lk~EknELr~E~~~L------k~e~e~le~qlk~ 173 (235)
|.+--.|+.+|+..+..+......|..+.+. |..++-.||+++..+ -..|..+++.|.+
T Consensus 288 l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a 356 (521)
T KOG1937|consen 288 LDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEA 356 (521)
T ss_pred cCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 3444567777777777666655555444332 333444444433211 2445555555554
No 408
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=62.17 E-value=85 Score=25.56 Aligned_cols=48 Identities=8% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 126 RTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 126 q~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
...+..+-.--..|..+.+.|......|+.++..+....+++..-||.
T Consensus 39 n~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKE 86 (121)
T PF06320_consen 39 NSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKE 86 (121)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333344444444444444444444444444444443
No 409
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=62.12 E-value=26 Score=29.02 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
.-++++....+-.+-|-.|..|+|-|.+||..|+.|+
T Consensus 83 ~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 83 KQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3345555544445568888899999998888888764
No 410
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=61.86 E-value=9.1 Score=36.36 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
-+|||=|+.+|.-|+..|..|-+|++.||
T Consensus 311 KEYVKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred hHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 48999999999999999999977776664
No 411
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=61.86 E-value=51 Score=29.35 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCC--CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 88 DRLNERFLELGSMLE--PGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNEN--LQEKIKELKAEKNELRDEKQRLKAD 163 (235)
Q Consensus 88 ekINd~F~eLrslLP--~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~--L~~ei~eLk~EknELr~E~~~Lk~e 163 (235)
+++.+-+..|.++=- .-+..-.|...=..|.-..|+.|+.+.++|.+-.++ --+++-++..+.++.+.|...++.+
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554321 111134566666667777888888888888774432 2345667888999999999999999
Q ss_pred HHHHHHHHHh
Q 026646 164 KEKLEQQVKA 173 (235)
Q Consensus 164 ~e~le~qlk~ 173 (235)
+..|+.++.-
T Consensus 185 ~~~l~~~v~~ 194 (262)
T PF14257_consen 185 LKYLDDRVDY 194 (262)
T ss_pred HHHHHHhhce
Confidence 9999999987
No 412
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=61.82 E-value=73 Score=31.54 Aligned_cols=65 Identities=20% Similarity=0.413 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQ-SNENLQEKIKELK-------AEKNELRDEKQRLKADKEKLEQQVKAMSAPS 178 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~-e~~~L~~ei~eLk-------~EknELr~E~~~Lk~e~e~le~qlk~~~~~p 178 (235)
|-.++-..++++..++.+.+. .+++|.+.++++. .+...|..|...|..++.+||.-|.+++.|-
T Consensus 49 ir~~sr~l~~e~~~~t~~~q~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~ 121 (421)
T KOG2685|consen 49 IRRESRLLVNETNALTDKMQRDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPL 121 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 555566666666666655544 4566666655444 3444555566666677777777777776653
No 413
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=61.79 E-value=60 Score=27.17 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhccCCC
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD-------EKQRLKADKEKLEQQVKAMSAPS 178 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~-------E~~~Lk~e~e~le~qlk~~~~~p 178 (235)
+++.-|+.|+..+.+|. .++|++-++.|..-++|-++ +...-...++.+.++|...+..+
T Consensus 6 k~l~niR~lra~~re~~--~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis~ 72 (135)
T PRK10947 6 KILNNIRTLRAQARECT--LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDP 72 (135)
T ss_pred HHHHhHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 66777888888776553 23333333333333333333 33333333444445555544433
No 414
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=61.69 E-value=33 Score=28.68 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 026646 81 CREKLRRDRLNERFLE 96 (235)
Q Consensus 81 ~~ERrRRekINd~F~e 96 (235)
+.|=+|=..|+.+|..
T Consensus 51 VsEL~~Ls~LK~~y~~ 66 (131)
T PF04859_consen 51 VSELRRLSELKRRYRK 66 (131)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3444555555555544
No 415
>PRK01156 chromosome segregation protein; Provisional
Probab=61.66 E-value=91 Score=32.57 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
...-..+..|+.+...|......|..+++++..+
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~ 710 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTR 710 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444444444444444433
No 416
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=61.48 E-value=43 Score=25.31 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 126 RTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 126 q~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
...+..|..+++.|..+++....+...++++.
T Consensus 2 ~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 2 TKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444444433
No 417
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=61.46 E-value=35 Score=27.20 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+|+.+.+-.+++-+-|+. ...++.++|..|..|+.+..-...
T Consensus 5 eLR~qLqFvEEEa~LlRR-------kl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRR-------KLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555555555544444 444555555555555555544443
No 418
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=61.42 E-value=46 Score=29.05 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
-+..+..++..++.+..+|.........++..++.++.++.......+.+-+.+
T Consensus 116 ~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~i 169 (216)
T cd07627 116 YWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEV 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444432111112344445455544444444444433333
No 419
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=61.30 E-value=94 Score=25.75 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhccC
Q 026646 159 RLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 159 ~Lk~e~e~le~qlk~~~~ 176 (235)
.+...+.+....|+.++.
T Consensus 95 Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 95 DLEEKRKKYKERLKELGE 112 (136)
T ss_pred hHHHHHHHHHHHHHHcCC
Confidence 344444555555665554
No 420
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.28 E-value=55 Score=27.16 Aligned_cols=9 Identities=33% Similarity=0.387 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 026646 146 LKAEKNELR 154 (235)
Q Consensus 146 Lk~EknELr 154 (235)
|+.++.++.
T Consensus 150 l~~~i~~~e 158 (218)
T cd07596 150 LEEELEEAE 158 (218)
T ss_pred HHHHHHHHH
Confidence 333333333
No 421
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=61.26 E-value=1.4e+02 Score=32.14 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 84 KLRRDRLNERFLELG 98 (235)
Q Consensus 84 RrRRekINd~F~eLr 98 (235)
|||=.-||.+|.+=.
T Consensus 400 rRrLrilnqqlreqe 414 (861)
T PF15254_consen 400 RRRLRILNQQLREQE 414 (861)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445677777633
No 422
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=61.14 E-value=89 Score=26.12 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 113 TILSDAVQMMEQLRTEAQ-KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~-~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
....++|.-|-.|+..|= ...+....|+++.+.||.-.--+++--..=+..|+.|+.||+.+
T Consensus 63 ~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 63 MFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred chhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 367778888887877653 23334555555555554444333333334467788888888754
No 423
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.09 E-value=48 Score=36.43 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCchhhHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 79 KACREKLRRDRLNERFLELGSMLEPGR-PPKTDKATILSDAVQMME----QLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 79 H~~~ERrRRekINd~F~eLrslLP~~~-~~K~dKasIL~dAIeYIk----~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
+...=+.+|+++++.+.+|.. -... ..-..|..-|..-+.|.+ .++..+..++.+......++.+...+..++
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~--~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i 730 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK--RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEI 730 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 334446799999998888877 1110 022355556666666643 233333344444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026646 154 RDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 154 r~E~~~Lk~e~e~le~qlk~ 173 (235)
..+......++..|+.++..
T Consensus 731 ~r~l~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 731 KRKLQNREGEMKELEERMNK 750 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566655554
No 424
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.08 E-value=33 Score=37.33 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=14.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 134 QSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 134 ~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
++.+.+..++.+|+..+..|..+...+...|..|+.|+.
T Consensus 403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333444443
No 425
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.07 E-value=24 Score=38.40 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHH
Q 026646 107 PKTDKATILSDAVQMMEQLRTEAQK 131 (235)
Q Consensus 107 ~K~dKasIL~dAIeYIk~Lq~qv~~ 131 (235)
.|+.|.++|.|=+.-|..|++.+..
T Consensus 398 Qkl~K~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 398 QKLMKKTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999888887643
No 426
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=61.07 E-value=54 Score=35.73 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.6
Q ss_pred CCCCCC
Q 026646 177 PSGFLP 182 (235)
Q Consensus 177 ~p~~~p 182 (235)
-+|+..
T Consensus 514 ~~Gv~G 519 (1163)
T COG1196 514 LPGVYG 519 (1163)
T ss_pred CCCccc
Confidence 344443
No 427
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=61.06 E-value=1.1e+02 Score=28.57 Aligned_cols=91 Identities=19% Similarity=0.341 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 83 EKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQS-NENLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 83 ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e-~~~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
|-.+.+.....|..+.+++-..........+-|..||+-|.+-+.+ +... .++|.+....+.....++...+..|.
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ave~ia~~~~~---~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~ 241 (276)
T PF05929_consen 165 EEEQEEEGKSLFSKVKALFKKKEASDDEQFADLQQAVEAIAEQQQE---LEEAFEEQLSEQETQVAELKQELKEQHEALT 241 (276)
T ss_pred hhhcccchhhhhHHhhhhhcCCcCcchhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4444455677788888888654323333445677777766554442 2221 22343334444445556666677777
Q ss_pred HHHHHHHHHHHhccC
Q 026646 162 ADKEKLEQQVKAMSA 176 (235)
Q Consensus 162 ~e~e~le~qlk~~~~ 176 (235)
.+...|..+|...-.
T Consensus 242 ~~f~~L~~~L~~~~~ 256 (276)
T PF05929_consen 242 EDFAALKEKLSSTDA 256 (276)
T ss_pred HHHHHHHHHhhCCCC
Confidence 888888888875443
No 428
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=61.05 E-value=61 Score=33.33 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
.|++-|..|..+--.- .....+.++|..|-....+++.--+.|......+..+|+..-.+.|.|-++...|..+|.
T Consensus 111 ~L~~Ff~alq~la~~P-~~~aaRq~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~ 186 (626)
T PRK08871 111 NLNEWFDAVKTLADSP-NDLGARKVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMM 186 (626)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555554211 145668888998888887777777777766666666666666667777766666666663
No 429
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=61.04 E-value=5.3 Score=31.49 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=11.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 131 KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
.|..++..|..++..|+.+.++|..+...++.....|+..|
T Consensus 29 ~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 29 ELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 33344444444444444444444444444444444444443
No 430
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=60.98 E-value=33 Score=37.28 Aligned_cols=25 Identities=48% Similarity=0.622 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 144 KELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 144 ~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
.++..+...++++...++.++..++
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~ 487 (1163)
T COG1196 463 KELERELAELQEELQRLEKELSSLE 487 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 431
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.82 E-value=44 Score=31.63 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhH
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNE 137 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~ 137 (235)
++=.+|..-|.+|..++++|++++.
T Consensus 11 GL~~~aLqKIqelE~QldkLkKE~q 35 (307)
T PF10481_consen 11 GLPTRALQKIQELEQQLDKLKKERQ 35 (307)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677778888888888876654
No 432
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=60.59 E-value=58 Score=34.29 Aligned_cols=52 Identities=27% Similarity=0.450 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
-|.+|+.++..++.++...+.++..|....++|+.++..+..++.+|..+||
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~k 86 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIK 86 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444444555555555555555555555444444444
No 433
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.36 E-value=96 Score=27.49 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 026646 159 RLKADKEKLEQQVK 172 (235)
Q Consensus 159 ~Lk~e~e~le~qlk 172 (235)
.+...|..|..+|+
T Consensus 173 ~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 173 EYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 434
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.25 E-value=74 Score=30.18 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhc
Q 026646 161 KADKEKLEQQVKAM 174 (235)
Q Consensus 161 k~e~e~le~qlk~~ 174 (235)
..+..|||..|.+|
T Consensus 155 NiQN~KLEsLLqsM 168 (305)
T PF15290_consen 155 NIQNKKLESLLQSM 168 (305)
T ss_pred hhhHhHHHHHHHHH
Confidence 34455677778775
No 435
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=60.06 E-value=1.1e+02 Score=29.21 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHh
Q 026646 159 RLKADKEKLEQQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~le~qlk~ 173 (235)
.|.+++..|+.+|..
T Consensus 189 ~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 189 KLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHcc
Confidence 344444444444443
No 436
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.99 E-value=62 Score=31.84 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
+.+-.+++..+.++..++..+...+..++++++.++.+|+.+...|..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445556666666677777777667777777777777666666655543
No 437
>COG5570 Uncharacterized small protein [Function unknown]
Probab=59.93 E-value=22 Score=25.75 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQ-------EKIKELKAEKNELRDEKQRLKAD 163 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~-------~ei~eLk~EknELr~E~~~Lk~e 163 (235)
.|.+|+.....|+.+...-. ..|.+||..|--|.+|...||++
T Consensus 6 hl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 6 HLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45556665555555543221 23666666666667776666654
No 438
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=59.80 E-value=51 Score=33.15 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026646 156 EKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 156 E~~~Lk~e~e~le~qlk~ 173 (235)
|+..++.|+|.+..+|+.
T Consensus 303 e~e~~rkelE~lR~~L~k 320 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEK 320 (575)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445555566666666654
No 439
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.44 E-value=80 Score=30.35 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 151 NELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
+++..+.+.+..++++..+++...+
T Consensus 297 ~~~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 297 SERTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455566667777777776643
No 440
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=59.43 E-value=67 Score=23.46 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNE 137 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~ 137 (235)
+.+...+.++|+.++.....+..
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr 43 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELR 43 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544443
No 441
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=59.23 E-value=22 Score=36.82 Aligned_cols=48 Identities=35% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 127 TEAQKLKQSNENLQEK--------------IKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~e--------------i~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
++|+.|-.+|.+|.+. +.+|.-|+.-||.|+...|.-+.+||.+++.+
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~el 362 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIREL 362 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHH
No 442
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.07 E-value=40 Score=25.93 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
+.+.++|..|+....+|.+++..|+.++
T Consensus 71 ~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 71 QLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677778777777887777777665
No 443
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=58.98 E-value=73 Score=26.15 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=7.7
Q ss_pred cCcchHHHHHHHHHH
Q 026646 76 SGSKACREKLRRDRL 90 (235)
Q Consensus 76 ~~sH~~~ERrRRekI 90 (235)
...|.+.=|.|+.-+
T Consensus 40 q~~h~~e~~l~~~~~ 54 (134)
T PF07047_consen 40 QSYHRFEVRLKMRIL 54 (134)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345555555555333
No 444
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.97 E-value=57 Score=31.61 Aligned_cols=55 Identities=25% Similarity=0.406 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 120 QMMEQLRTEAQKLKQSNENLQ---EK-IKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~---~e-i~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.-+..|+.+...+.++..++. ++ .++|+.+..+|+++...|+.+...++.++..+
T Consensus 44 ~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 44 SEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554443321 12 45666677777777777777777777777763
No 445
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=58.84 E-value=19 Score=39.61 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhc
Q 026646 161 KADKEKLEQQVKAM 174 (235)
Q Consensus 161 k~e~e~le~qlk~~ 174 (235)
.++||+||+||+.+
T Consensus 1159 FSDIEkLE~qLq~~ 1172 (1439)
T PF12252_consen 1159 FSDIEKLEKQLQVI 1172 (1439)
T ss_pred HHHHHHHHHHHHHh
Confidence 36777788887764
No 446
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=58.81 E-value=48 Score=36.20 Aligned_cols=86 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CCCchhhHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 87 RDRLNERFLELGSMLEPGRP---PKTDKATILSDAVQM-----MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~---~K~dKasIL~dAIeY-----Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
+.++|-.+.-|...||..+. ++.+....|..+..- +.+-+.+..+|+....+|+.....-+..++.|+++..
T Consensus 133 v~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~ 212 (1072)
T KOG0979|consen 133 VAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEID 212 (1072)
T ss_pred HHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 026646 159 RLKADKEKLEQQVK 172 (235)
Q Consensus 159 ~Lk~e~e~le~qlk 172 (235)
.|..+.|+..+..+
T Consensus 213 ~l~kdVE~~rer~~ 226 (1072)
T KOG0979|consen 213 KLEKDVERVRERER 226 (1072)
T ss_pred HHHHHHHHHHHHHH
No 447
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=58.72 E-value=3.2 Score=37.85 Aligned_cols=42 Identities=38% Similarity=0.498 Sum_probs=0.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 107 PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 107 ~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
+|.|| +||.+=.--|.+|++-|+-|-.+|+.|+.+.+.|+.|
T Consensus 117 pKDdK-T~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae 158 (243)
T PF08961_consen 117 PKDDK-TRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAE 158 (243)
T ss_dssp -------------------------------------------
T ss_pred CCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 3444444456666666666666666655544444333
No 448
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.57 E-value=73 Score=29.09 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026646 152 ELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..+.++..+++|++.++.++..
T Consensus 174 k~~~dr~~~~~ev~~~e~kve~ 195 (243)
T cd07666 174 NKKADRDLLKEEIEKLEDKVEC 195 (243)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555443
No 449
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=58.26 E-value=56 Score=33.62 Aligned_cols=56 Identities=23% Similarity=0.491 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNE----------------------------LRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknE----------------------------Lr~E~~~Lk~e~e~le~q 170 (235)
-+.+..|+.++..|+.++..|++++..|..++.. -+.+...|++|+++|..+
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777655433 123556888888888888
Q ss_pred HHhc
Q 026646 171 VKAM 174 (235)
Q Consensus 171 lk~~ 174 (235)
|+.+
T Consensus 582 l~~l 585 (722)
T PF05557_consen 582 LRSL 585 (722)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 450
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=58.23 E-value=37 Score=28.69 Aligned_cols=7 Identities=29% Similarity=1.203 Sum_probs=0.0
Q ss_pred CCccccc
Q 026646 210 GVAMWQF 216 (235)
Q Consensus 210 g~~mwq~ 216 (235)
|.+.|.|
T Consensus 151 si~~W~~ 157 (161)
T PF04420_consen 151 SITVWLF 157 (161)
T ss_dssp -------
T ss_pred ehHHHHH
Confidence 4478876
No 451
>PF13514 AAA_27: AAA domain
Probab=58.21 E-value=65 Score=34.86 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=47.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 108 KTDKATILSDAVQMMEQLRTEAQKLKQ---SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 108 K~dKasIL~dAIeYIk~Lq~qv~~L~~---e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..+...|..++.-+++|+.+++.... ....+..++..+..+..+|+.+...++.+..+++.....
T Consensus 145 prg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~ 213 (1111)
T PF13514_consen 145 PRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRA 213 (1111)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677899999999999999887775 445556666777777777777777777777666665444
No 452
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.20 E-value=59 Score=23.77 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=21.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+++...++..+++.+....+.|..-.+.+..++..+..+|+.+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444455555555555555543
No 453
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=58.19 E-value=1.1e+02 Score=26.27 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 139 LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 139 L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..+|..|+.+..+|......+-.++..++..|..
T Consensus 27 ~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~ 61 (188)
T PF10018_consen 27 NQARIQQLRAEIEELDEQIRDILKQLKEARKELRT 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444444444554444
No 454
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.15 E-value=51 Score=32.27 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----
Q 026646 80 ACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQ-LRTEAQKLKQSNENLQEKIKELKAEKNELR---- 154 (235)
Q Consensus 80 ~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~-Lq~qv~~L~~e~~~L~~ei~eLk~EknELr---- 154 (235)
.......+..+...+.+|+++- ...+.|...++-++. ++.+++-+.+.+++-+-..+.|....|++.
T Consensus 204 ~~~~~~~~~~l~~~~~el~eik--------~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq 275 (395)
T PF10267_consen 204 SSVSSQQNLGLQKILEELREIK--------ESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQ 275 (395)
T ss_pred ccccccccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777666776643 344667777777764 555555554444444444555666666553
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 155 DEKQRLKADKEKLEQ 169 (235)
Q Consensus 155 ~E~~~Lk~e~e~le~ 169 (235)
+|...||+++..+|.
T Consensus 276 ~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 276 NEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHhHHH
Confidence 477888888755444
No 455
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=58.14 E-value=85 Score=24.26 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
.+|..+++.|......|-+++......-+.|
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 3344444444444444444444443333333
No 456
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=57.87 E-value=14 Score=27.18 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
+++++.||..+.+|.+.+..|+.|...|.+
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777766666554
No 457
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=57.85 E-value=65 Score=32.12 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+++..+..+.....++..|+....-|+.|....|.++.++.+....
T Consensus 289 ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 289 ELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444555555555555555554443
No 458
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=57.82 E-value=90 Score=28.11 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
-..-..++.-+..|+..+..++.++..+.+.+..|+.....|......+++.++-
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777776666666555555544444444444444444444333
No 459
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=57.81 E-value=57 Score=30.02 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhc
Q 026646 89 RLNERFLELGSM 100 (235)
Q Consensus 89 kINd~F~eLrsl 100 (235)
++......|.+.
T Consensus 92 ~l~a~~~~l~~~ 103 (423)
T TIGR01843 92 RLEAEVARLRAE 103 (423)
T ss_pred HHHHHHHHHHHH
Confidence 333333344333
No 460
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.73 E-value=60 Score=36.82 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 026646 89 RLNERFLEL 97 (235)
Q Consensus 89 kINd~F~eL 97 (235)
+|++.+.+|
T Consensus 311 rI~diL~EL 319 (1486)
T PRK04863 311 EMARELAEL 319 (1486)
T ss_pred HHHHHHHHH
Confidence 333333333
No 461
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=57.68 E-value=97 Score=27.55 Aligned_cols=12 Identities=33% Similarity=0.169 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 026646 81 CREKLRRDRLNE 92 (235)
Q Consensus 81 ~~ERrRRekINd 92 (235)
..|-+||...+.
T Consensus 51 ~~E~k~R~E~~~ 62 (247)
T PF06705_consen 51 EAEVKRRVESNK 62 (247)
T ss_pred HHHHHHHHHHHH
Confidence 456666654444
No 462
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=57.68 E-value=74 Score=32.87 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
.|++-|..|.++--.- ..-..+..+|..|-..+.+++.--..|......+..+|+..-.+.|.|-++...|..+|
T Consensus 108 ~l~~ff~a~q~la~~P-~~~~~Rq~vl~~A~~L~~~fn~~~~~L~~~~~~~n~~I~~~V~~iN~l~~qIA~LN~qI 182 (649)
T PRK12715 108 PLQTFFDSIGQLNSTP-DNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVNGKL 182 (649)
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443210 14556788888888888777777777776666666666666666666666655555554
No 463
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=57.58 E-value=84 Score=25.93 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..|++-|..|+.++.+++... ..+|..++ ..+..+...|+.+++.|+..|+.
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~---~~~I~~i~---~~~~~~~~~l~~~i~~l~~~l~~ 57 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEA---NDEIARIK---EWYEAEIAPLQNRIEYLEGLLQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777887777776644 44555443 33555667778888888888876
No 464
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=57.46 E-value=75 Score=24.55 Aligned_cols=44 Identities=18% Similarity=0.425 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
.+|-..++.|.....+|.+..+.+..++.--.+|..+-++++++
T Consensus 28 dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 28 DQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 33444455555555555555444444444444555555444443
No 465
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=57.31 E-value=22 Score=27.33 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=6.0
Q ss_pred HHHHhHHHHHHHHHH
Q 026646 132 LKQSNENLQEKIKEL 146 (235)
Q Consensus 132 L~~e~~~L~~ei~eL 146 (235)
|.++|.+|.++|+.|
T Consensus 5 i~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 5 IQEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 466
>PRK14160 heat shock protein GrpE; Provisional
Probab=57.24 E-value=67 Score=28.83 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNE 152 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknE 152 (235)
..|+.++..|+.+...|..+...+.++...
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN 93 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDN 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 467
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=57.21 E-value=11 Score=25.91 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=10.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
+..+|-+.|..+..++.+|..+..+|..|+..|+.+.
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4445556666777777777777777777777776553
No 468
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=57.11 E-value=1.2e+02 Score=27.04 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 144 KELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 144 ~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
+....|...|+.|+.....++..|+.||..+.
T Consensus 150 ~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 150 QQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666653
No 469
>PHA02557 22 prohead core protein; Provisional
Probab=57.06 E-value=1.2e+02 Score=28.47 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHH-HHHHhcCCC-CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 82 REKLRRDRLNERF-LELGSMLEP-GRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQR 159 (235)
Q Consensus 82 ~ERrRRekINd~F-~eLrslLP~-~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~ 159 (235)
.++-=+..|-+.| ..|+.++-- +-....+|+.++..-.+-|.+.++++..|..+|.+|++.|.+++.+.--.+--+-.
T Consensus 108 v~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gL 187 (271)
T PHA02557 108 VDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDL 187 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4444444444444 445544321 11123345555555555555555555555555555555555554433211222224
Q ss_pred HHHHHHHHHHHHHhccC
Q 026646 160 LKADKEKLEQQVKAMSA 176 (235)
Q Consensus 160 Lk~e~e~le~qlk~~~~ 176 (235)
-.++++++...+..+..
T Consensus 188 tdsQkeKv~~L~Egvef 204 (271)
T PHA02557 188 TESQKEKVASLAEGLEF 204 (271)
T ss_pred hHHHHHHHHHHHhccch
Confidence 45667777766665543
No 470
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=56.98 E-value=58 Score=36.31 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 026646 84 KLRRDRLNERFLELGSMLE 102 (235)
Q Consensus 84 RrRRekINd~F~eLrslLP 102 (235)
+..-+.+......|..++-
T Consensus 236 ~~~le~l~~~~~~l~~i~~ 254 (1353)
T TIGR02680 236 RDELERLEALERALRNFLQ 254 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344566666666766664
No 471
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=56.86 E-value=27 Score=27.16 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=6.6
Q ss_pred HHHHHHHHHhcCC
Q 026646 90 LNERFLELGSMLE 102 (235)
Q Consensus 90 INd~F~eLrslLP 102 (235)
|..+|.+|-.||.
T Consensus 32 v~~kLneLd~Li~ 44 (109)
T PF03980_consen 32 VVEKLNELDKLIE 44 (109)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555553
No 472
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=56.80 E-value=49 Score=33.63 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=38.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcc
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD----EKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~----E~~~Lk~e~e~le~qlk~~~ 175 (235)
+|.--|+++|.-++.+ +.+|.++++.+..++-+.-.+.+++++ |+..-++|+|+||.+|..++
T Consensus 480 nksi~Lee~i~~~~~~---i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 480 NKSITLEEDIKNLKHD---INELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred ccceeHHHHhhhHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4433388877655544 444555555555554444444444444 45577889999999988764
No 473
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.74 E-value=48 Score=25.77 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDE 156 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E 156 (235)
.|..+++.|+.+...|..++..+..+.++++..
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666656665555555555555443
No 474
>PHA00489 scaffolding protein
Probab=56.70 E-value=52 Score=26.30 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
+-.+.+.+||..+-....+.+.|.+..+.|++++..|...|+.|..
T Consensus 24 ErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLFr 69 (101)
T PHA00489 24 ERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLFR 69 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 4456777888888888888888888888888888888877777753
No 475
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=56.62 E-value=89 Score=28.61 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 026646 153 LRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk~~ 174 (235)
..+|++.||.-.-.|..||..+
T Consensus 233 ~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 233 MKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3446666666666666666643
No 476
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=56.53 E-value=1e+02 Score=31.39 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQ 130 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~ 130 (235)
.....=.||-+++..++
T Consensus 540 akN~lEs~Iy~~r~~L~ 556 (653)
T PTZ00009 540 AKNGLENYCYSMKNTLQ 556 (653)
T ss_pred HHhhhHHHHHHHHHHHh
Confidence 33444455555555443
No 477
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=56.48 E-value=48 Score=29.61 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 026646 81 CREKLRRDR 89 (235)
Q Consensus 81 ~~ERrRRek 89 (235)
...|.||..
T Consensus 21 l~~rLR~~E 29 (195)
T PF10226_consen 21 LVRRLRRAE 29 (195)
T ss_pred HHHHHHHHH
Confidence 445555543
No 478
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.27 E-value=49 Score=30.07 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIK------ELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~------eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
+|.+|+.|++.++.+.+.|....+ .-...+.+|+.-..+.+-=+.+|+.-|+.+..
T Consensus 130 ~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N 191 (233)
T PF04065_consen 130 SIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDN 191 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344566666666666666654321 12234457777778888889999999998744
No 479
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=56.21 E-value=85 Score=28.91 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNEL------------------------RDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL------------------------r~E~~~Lk~e~e~le~q 170 (235)
+..|.+.|..|+++-+.|..+.+.|+.+|.+-+.+.+.+ .+...+=..||..||.+
T Consensus 175 ~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k 254 (259)
T PF08657_consen 175 LPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERK 254 (259)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHhc
Q 026646 171 VKAM 174 (235)
Q Consensus 171 lk~~ 174 (235)
++.+
T Consensus 255 ~~~L 258 (259)
T PF08657_consen 255 KREL 258 (259)
T ss_pred HHhc
No 480
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.19 E-value=47 Score=27.78 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026646 152 ELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~ql 171 (235)
+|+.|...-.+||..|..+|
T Consensus 98 kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 98 KLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 481
>PHA01750 hypothetical protein
Probab=56.10 E-value=88 Score=23.77 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+|++.+.--|=..-+---+.++....--++| ++.|...|+-|.+.++...+.+++|++.+
T Consensus 9 tlmSTtaTtlFaIiqlYlKIKq~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 9 TLMSTTATTLFAIIQLYLKIKQALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
No 482
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=56.06 E-value=68 Score=32.24 Aligned_cols=83 Identities=18% Similarity=0.458 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 88 DRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 88 ekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
+.|..+|..+...+- ++...-+...+-++++..++..++++...+.+.+..|..+-.+.|+....++.++..+
T Consensus 354 ~~l~~~~~~~~~~i~-------~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 354 KELEKRYEDLEERIE-------EQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHH-------cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444442 3344455566667777788888888888888888888888888888888888888888
Q ss_pred HHHHHhccCC
Q 026646 168 EQQVKAMSAP 177 (235)
Q Consensus 168 e~qlk~~~~~ 177 (235)
...|+..+-|
T Consensus 427 kR~lek~nLP 436 (560)
T PF06160_consen 427 KRRLEKSNLP 436 (560)
T ss_pred HHHHHHcCCC
Confidence 8888876653
No 483
>PHA03011 hypothetical protein; Provisional
Probab=56.02 E-value=60 Score=26.55 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQ----SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~----e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
=+|+..|.-+-..+-. ....+.+.+++|....|+|-+|-+.+..++..+++-++
T Consensus 38 dEYLanL~f~P~qi~dfk~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQ 95 (120)
T PHA03011 38 DEYLANLIFEPEQIFDFKEGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQ 95 (120)
T ss_pred HHHHHhhhcCHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777655444433 33456677788888888888888888888887777654
No 484
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=55.94 E-value=85 Score=23.55 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
.++.....|...-..-..++..|+..+..|..|+..++.
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566677777777777777776654
No 485
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=55.90 E-value=61 Score=25.30 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 151 NELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
..|.+|+..|+...++.|.||+.+
T Consensus 39 ~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 39 RSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHH
Confidence 456778888888888888888875
No 486
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=55.84 E-value=70 Score=28.65 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026646 145 ELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 145 eLk~EknELr~E~~~Lk~e~e 165 (235)
+|+.+.|-|+++...|+.+..
T Consensus 120 el~kklnslkk~~e~lr~el~ 140 (203)
T KOG3433|consen 120 ELTKKLNSLKKILESLRWELA 140 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 487
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=55.76 E-value=3.8 Score=32.77 Aligned_cols=40 Identities=25% Similarity=0.475 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKAD 163 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e 163 (235)
+|.++..++-++...|+.++..|+.+..+|+++...|..+
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~ 42 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQ 42 (118)
T ss_dssp ----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444545555555555444444333
No 488
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=55.74 E-value=81 Score=23.28 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELK-----AEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk-----~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|..+..-+...+.++..|......+...+.... .....++.-...|...|..++.++..+
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 71 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERL 71 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=55.68 E-value=93 Score=26.11 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEA-QKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 120 eYIk~Lq~qv-~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
+|-+.|+... -.++...-...+.|+.|+.-....+.+.++|+..+..++.
T Consensus 82 ~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 82 QYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=55.60 E-value=1e+02 Score=26.91 Aligned_cols=74 Identities=18% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 90 LNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKI---KELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 90 INd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei---~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
+|..|..+..++-.+ -.|+-.++. .+.-+.++++++.+|+.++..|...| .+++..+.++.++...++..+.+
T Consensus 85 f~~~~k~~~~ifkeg---g~d~~k~~~-~l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 85 FESFFKDLSKIFKEG---GGDKQKQLK-LLPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHhc---CCchhhHHH-HHHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 026646 167 L 167 (235)
Q Consensus 167 l 167 (235)
+
T Consensus 161 I 161 (163)
T PF03233_consen 161 I 161 (163)
T ss_pred h
No 491
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=55.45 E-value=87 Score=26.94 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.|...|..++..++.++..|...+.....++...+.....+...|+.+...+..+
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l 133 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRL 133 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
No 492
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=55.33 E-value=66 Score=27.29 Aligned_cols=68 Identities=21% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQ--SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSGFL 181 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~--e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~~~ 181 (235)
++--...-+++|+++-..+-. ....|++-+..+..+.++++++...++.+++.++..++..-.-.|++
T Consensus 17 ~~~~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvv 86 (151)
T PF14584_consen 17 LIIILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVV 86 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEE
No 493
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=55.30 E-value=55 Score=31.86 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNE--LRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknE--Lr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.|+-.-.||++..+|++||+.|..+++.|+.+.-. +-+..+....+.+++-.-+..+
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
No 494
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=55.29 E-value=79 Score=30.37 Aligned_cols=56 Identities=14% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.....|++|-.--++-+...+.|..+-..+...++.|+++|..+-.|.+.|++|.+
T Consensus 9 ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyr 64 (328)
T PF15369_consen 9 RIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYR 64 (328)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 495
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=55.28 E-value=40 Score=33.73 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
.|+...+.|+.+++.|++...+|++.+.|+|.+.-.||...+-++.+
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e 456 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEE 456 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 496
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=55.21 E-value=91 Score=25.82 Aligned_cols=51 Identities=33% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
.+...|.+....++.+...|.............+......|++.++++..+
T Consensus 27 ~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E 77 (136)
T PF04871_consen 27 QAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEE 77 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.19 E-value=28 Score=32.26 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhhhh
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSGFLPHPSSMSAAFAA 193 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~~~p~~~~~p~~~~~ 193 (235)
+....+.-|.+|++|+..|..+.++|+- +.+|....|..+.+......+++.++....+...+-+-+.. +.|.++..
T Consensus 50 ~~~~~~~~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~~a~~~~~~~~~~--a~~~~~~~ 126 (262)
T COG1729 50 VQNAHSYRLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGRQALAQGIGDQSG--AAPDATTP 126 (262)
T ss_pred ccchhhhccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc--ccccccCC
Q ss_pred hhhhcCCccccc
Q 026646 194 QSQVAGNKLVPF 205 (235)
Q Consensus 194 ~~qa~~~k~~p~ 205 (235)
+.....+.-.|.
T Consensus 127 ~~~~~~~~~~p~ 138 (262)
T COG1729 127 GSASVDGDGAPV 138 (262)
T ss_pred CCCCCCCCCCCC
No 498
>PHA01750 hypothetical protein
Probab=54.95 E-value=92 Score=23.66 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQ-SNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~-e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
+|++==...=..|+..+++.-+ |...|..++++++....+|.+....+|...+++
T Consensus 20 aIiqlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk~ 75 (75)
T PHA01750 20 AIIQLYLKIKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDKK 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC
No 499
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=54.90 E-value=61 Score=34.43 Aligned_cols=83 Identities=23% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------H
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ-------R 159 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~-------~ 159 (235)
||.|.+.=...+.|..-| .|.+|--.-..+| ||+|+.+.+.-+.-.+++.+.|..|..|.|.|..-+. .
T Consensus 445 ~DeLaEkdE~I~~lm~EG--EkLSK~ql~qs~i--IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~ 520 (961)
T KOG4673|consen 445 KDELAEKDEIINQLMAEG--EKLSKKQLAQSAI--IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKL 520 (961)
T ss_pred hHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHH--HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q 026646 160 LKADKEKLEQQVKA 173 (235)
Q Consensus 160 Lk~e~e~le~qlk~ 173 (235)
+...|++++.+++.
T Consensus 521 ~~E~I~k~~ae~~r 534 (961)
T KOG4673|consen 521 LQETIEKHQAELTR 534 (961)
T ss_pred HHHHHHHHHHHHHH
No 500
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=54.83 E-value=56 Score=30.29 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
.++.+.-.+.+.+.++....++.|++|+.++..|+.|...|..+.......+
T Consensus 179 ~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 179 PALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
Done!