Query 026646
Match_columns 235
No_of_seqs 199 out of 853
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 18:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.8 1.3E-18 4.5E-23 131.0 8.3 72 75-147 6-77 (82)
2 1nkp_B MAX protein, MYC proto- 99.8 1.7E-18 5.8E-23 129.8 8.5 75 76-150 3-77 (83)
3 1nkp_A C-MYC, MYC proto-oncoge 99.7 4.7E-18 1.6E-22 129.8 7.8 80 75-154 6-86 (88)
4 1nlw_A MAD protein, MAX dimeri 99.7 3.1E-17 1.1E-21 123.4 9.7 76 76-151 2-78 (80)
5 4ati_A MITF, microphthalmia-as 99.7 3.1E-17 1.1E-21 131.3 7.5 87 75-172 27-115 (118)
6 1hlo_A Protein (transcription 99.7 6.1E-17 2.1E-21 120.9 7.2 68 75-142 12-79 (80)
7 4h10_B Circadian locomoter out 99.6 1.2E-15 4E-20 113.0 5.8 58 75-133 8-65 (71)
8 1an4_A Protein (upstream stimu 99.6 4.4E-16 1.5E-20 111.8 3.0 56 75-130 5-64 (65)
9 1a0a_A BHLH, protein (phosphat 99.5 1.5E-15 5.2E-20 109.5 1.5 55 75-129 2-61 (63)
10 3u5v_A Protein MAX, transcript 99.5 1.4E-14 4.6E-19 108.3 3.6 60 74-133 4-65 (76)
11 4h10_A ARYL hydrocarbon recept 99.5 9.3E-15 3.2E-19 108.5 1.9 53 75-127 9-63 (73)
12 1mdy_A Protein (MYOD BHLH doma 99.3 1E-12 3.5E-17 96.2 3.7 56 74-129 11-66 (68)
13 4ath_A MITF, microphthalmia-as 99.2 1.1E-10 3.7E-15 88.8 11.1 52 87-138 4-57 (83)
14 2ql2_B Neurod1, neurogenic dif 99.2 1.7E-11 6E-16 87.6 5.4 55 75-129 2-57 (60)
15 4f3l_A Mclock, circadian locom 99.1 1.2E-10 4E-15 105.5 6.1 53 75-128 12-64 (361)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 6.1E-10 2.1E-14 102.1 4.5 54 75-128 13-68 (387)
17 2lfh_A DNA-binding protein inh 98.7 3E-09 1E-13 78.2 1.9 49 79-127 18-67 (68)
18 4aya_A DNA-binding protein inh 98.0 1.6E-05 5.5E-10 61.9 6.9 52 81-132 31-83 (97)
19 2jee_A YIIU; FTSZ, septum, coi 97.5 0.00069 2.4E-08 51.2 9.7 59 115-173 15-73 (81)
20 2jee_A YIIU; FTSZ, septum, coi 96.6 0.014 4.9E-07 43.9 8.8 56 119-174 5-67 (81)
21 2wt7_A Proto-oncogene protein 96.5 0.022 7.6E-07 40.3 8.8 57 83-154 1-57 (63)
22 3hnw_A Uncharacterized protein 96.1 0.057 2E-06 43.8 10.5 81 88-172 35-134 (138)
23 1gd2_E Transcription factor PA 96.0 0.0091 3.1E-07 43.7 4.9 42 118-159 27-68 (70)
24 3s9g_A Protein hexim1; cyclin 95.4 0.055 1.9E-06 42.3 7.5 57 108-168 29-92 (104)
25 2yy0_A C-MYC-binding protein; 95.4 0.023 8E-07 39.4 4.9 38 117-154 2-46 (53)
26 3a7p_A Autophagy protein 16; c 95.1 0.16 5.5E-06 42.2 10.0 87 86-174 36-122 (152)
27 1t2k_D Cyclic-AMP-dependent tr 95.0 0.054 1.9E-06 37.8 5.9 35 119-153 21-55 (61)
28 1go4_E MAD1 (mitotic arrest de 95.0 0.11 3.8E-06 40.4 8.2 56 120-175 12-95 (100)
29 3hnw_A Uncharacterized protein 95.0 0.18 6.3E-06 40.8 9.7 48 119-166 88-135 (138)
30 3nmd_A CGMP dependent protein 94.7 0.1 3.4E-06 38.5 6.8 47 122-168 21-67 (72)
31 2oqq_A Transcription factor HY 94.5 0.1 3.6E-06 34.7 5.8 35 120-154 3-37 (42)
32 3s4r_A Vimentin; alpha-helix, 94.5 0.27 9.2E-06 37.3 9.0 54 119-172 22-87 (93)
33 1jnm_A Proto-oncogene C-JUN; B 94.3 0.061 2.1E-06 37.7 4.7 35 119-153 21-55 (62)
34 1ci6_A Transcription factor AT 93.6 0.17 5.7E-06 35.8 5.9 18 124-141 27-44 (63)
35 1gu4_A CAAT/enhancer binding p 93.6 0.58 2E-05 34.7 9.0 55 120-174 15-69 (78)
36 3qh9_A Liprin-beta-2; coiled-c 93.2 0.64 2.2E-05 34.9 8.8 57 117-173 23-79 (81)
37 2v4h_A NF-kappa-B essential mo 93.1 1.1 3.8E-05 35.4 10.4 74 98-173 12-101 (110)
38 1deb_A APC protein, adenomatou 93.1 0.33 1.1E-05 33.7 6.4 46 123-168 6-51 (54)
39 3cve_A Homer protein homolog 1 93.0 0.42 1.4E-05 35.1 7.4 50 123-172 3-52 (72)
40 2v66_B Nuclear distribution pr 92.7 0.62 2.1E-05 36.8 8.5 51 122-172 5-59 (111)
41 1t2k_D Cyclic-AMP-dependent tr 92.5 0.48 1.6E-05 32.9 6.9 37 135-171 23-59 (61)
42 1dh3_A Transcription factor CR 92.5 0.11 3.7E-06 36.0 3.5 29 120-148 22-50 (55)
43 1hjb_A Ccaat/enhancer binding 92.3 0.95 3.3E-05 34.2 8.8 28 145-172 40-67 (87)
44 2wt7_B Transcription factor MA 92.2 1.1 3.8E-05 34.1 9.1 40 135-174 49-88 (90)
45 1ci6_A Transcription factor AT 92.2 0.94 3.2E-05 31.9 8.1 45 118-162 14-58 (63)
46 3oja_B Anopheles plasmodium-re 92.1 0.5 1.7E-05 44.3 8.6 12 113-124 505-516 (597)
47 3he5_B Synzip2; heterodimeric 92.0 0.5 1.7E-05 32.0 6.2 42 124-165 7-48 (52)
48 3q8t_A Beclin-1; autophagy, AT 91.7 0.88 3E-05 34.6 8.1 47 123-169 7-53 (96)
49 3htk_A Structural maintenance 91.7 1.8 6.3E-05 29.4 9.0 52 122-173 7-58 (60)
50 2dgc_A Protein (GCN4); basic d 91.5 0.25 8.4E-06 35.1 4.5 31 141-171 30-60 (63)
51 2v71_A Nuclear distribution pr 91.4 1.3 4.5E-05 37.8 9.7 55 118-172 54-112 (189)
52 2wt7_A Proto-oncogene protein 91.0 0.99 3.4E-05 31.6 7.2 37 136-172 25-61 (63)
53 3cvf_A Homer-3, homer protein 90.5 0.84 2.9E-05 34.0 6.8 48 125-172 11-58 (79)
54 3m9b_A Proteasome-associated A 90.4 0.29 9.9E-06 43.6 4.8 25 155-179 75-99 (251)
55 3o0z_A RHO-associated protein 90.2 2 6.7E-05 36.2 9.5 52 117-168 87-138 (168)
56 3swf_A CGMP-gated cation chann 90.2 1 3.5E-05 33.3 6.8 49 123-174 3-51 (74)
57 1hjb_A Ccaat/enhancer binding 90.0 0.54 1.8E-05 35.6 5.4 26 124-149 40-65 (87)
58 3ghg_A Fibrinogen alpha chain; 90.0 1.5 5.1E-05 42.9 9.8 52 114-165 103-155 (562)
59 3m91_A Proteasome-associated A 89.9 1.4 4.7E-05 30.3 6.9 40 121-167 10-49 (51)
60 3m9b_A Proteasome-associated A 89.9 0.41 1.4E-05 42.7 5.3 38 131-168 58-95 (251)
61 3swy_A Cyclic nucleotide-gated 89.8 1.4 4.7E-05 29.8 6.7 45 124-171 2-46 (46)
62 1jnm_A Proto-oncogene C-JUN; B 89.7 0.64 2.2E-05 32.4 5.3 30 143-172 24-53 (62)
63 3m91_A Proteasome-associated A 89.6 1.2 4E-05 30.6 6.4 39 137-175 12-50 (51)
64 3i00_A HIP-I, huntingtin-inter 89.5 1.6 5.4E-05 34.7 8.0 67 108-174 10-80 (120)
65 4b4t_K 26S protease regulatory 89.0 0.46 1.6E-05 44.6 5.3 45 135-179 50-94 (428)
66 3i00_A HIP-I, huntingtin-inter 88.8 4.8 0.00017 31.9 10.4 50 111-167 31-80 (120)
67 1gd2_E Transcription factor PA 88.8 1.1 3.9E-05 32.5 6.2 39 135-173 30-68 (70)
68 3s4r_A Vimentin; alpha-helix, 88.8 2.5 8.4E-05 31.9 8.3 33 136-168 58-90 (93)
69 1ik9_A DNA repair protein XRCC 88.7 2.5 8.5E-05 36.4 9.3 41 115-155 127-167 (213)
70 3he5_A Synzip1; heterodimeric 88.6 2.1 7.3E-05 28.6 6.8 23 120-142 3-25 (49)
71 4etp_A Kinesin-like protein KA 88.3 1.2 4.2E-05 41.4 7.7 53 122-174 5-57 (403)
72 3oja_B Anopheles plasmodium-re 88.2 3.6 0.00012 38.5 10.9 15 159-173 562-576 (597)
73 1go4_E MAD1 (mitotic arrest de 87.8 1.5 5.2E-05 34.0 6.7 43 141-183 12-54 (100)
74 1gu4_A CAAT/enhancer binding p 87.8 1.5 5.3E-05 32.4 6.4 33 122-154 38-70 (78)
75 3htk_A Structural maintenance 87.8 3.3 0.00011 28.1 7.8 50 117-166 9-58 (60)
76 1nkp_B MAX protein, MYC proto- 87.6 1 3.6E-05 32.7 5.5 33 143-175 49-81 (83)
77 3a7p_A Autophagy protein 16; c 87.6 3.6 0.00012 34.1 9.2 79 89-169 43-131 (152)
78 2fxo_A Myosin heavy chain, car 87.6 5.2 0.00018 31.4 9.9 60 113-172 62-121 (129)
79 2eqb_B RAB guanine nucleotide 87.0 5.9 0.0002 30.5 9.5 21 120-140 12-32 (97)
80 3m48_A General control protein 86.9 0.96 3.3E-05 28.6 4.1 22 139-160 5-26 (33)
81 1ic2_A Tropomyosin alpha chain 86.7 7.3 0.00025 28.2 9.7 58 116-173 16-73 (81)
82 3u59_A Tropomyosin beta chain; 86.6 6.2 0.00021 29.7 9.5 54 116-169 19-72 (101)
83 2dgc_A Protein (GCN4); basic d 86.6 3.1 0.0001 29.3 7.2 32 118-149 28-59 (63)
84 2xdj_A Uncharacterized protein 86.5 3.7 0.00013 30.6 8.0 31 139-169 25-55 (83)
85 3efg_A Protein SLYX homolog; x 86.3 2.3 7.9E-05 31.2 6.7 50 125-174 12-61 (78)
86 2oxj_A Hybrid alpha/beta pepti 86.2 1.1 3.7E-05 28.5 4.1 24 138-161 5-28 (34)
87 2dfs_A Myosin-5A; myosin-V, in 86.2 2.5 8.7E-05 44.0 9.3 16 153-168 1028-1043(1080)
88 3u1c_A Tropomyosin alpha-1 cha 86.1 7.2 0.00025 29.6 9.7 46 116-161 19-64 (101)
89 2w6a_A ARF GTPase-activating p 86.1 2.7 9.2E-05 30.0 6.6 36 126-161 26-61 (63)
90 2dfs_A Myosin-5A; myosin-V, in 86.0 2.9 0.0001 43.6 9.7 22 153-174 1021-1042(1080)
91 1kd8_A GABH AIV, GCN4 acid bas 85.9 1.9 6.5E-05 27.8 5.2 26 138-163 5-30 (36)
92 3oja_A Leucine-rich immune mol 85.8 15 0.00051 33.6 13.5 33 141-173 435-467 (487)
93 2xdj_A Uncharacterized protein 85.7 5.3 0.00018 29.7 8.5 39 135-173 28-66 (83)
94 1gk6_A Vimentin; intermediate 85.7 3.3 0.00011 28.7 6.9 51 122-172 2-52 (59)
95 2fxo_A Myosin heavy chain, car 85.7 6.9 0.00024 30.7 9.7 47 126-172 68-114 (129)
96 1ik9_A DNA repair protein XRCC 85.7 5.2 0.00018 34.4 9.6 38 120-157 139-176 (213)
97 3ol1_A Vimentin; structural ge 85.5 5.3 0.00018 31.2 8.8 23 121-143 21-43 (119)
98 3c3g_A Alpha/beta peptide with 85.3 1.3 4.5E-05 28.0 4.1 24 138-161 4-27 (33)
99 4h22_A Leucine-rich repeat fli 85.2 5.2 0.00018 31.2 8.5 51 123-173 33-83 (103)
100 2yy0_A C-MYC-binding protein; 85.2 1.6 5.6E-05 29.9 5.0 25 146-170 24-48 (53)
101 3na7_A HP0958; flagellar bioge 85.0 4.3 0.00015 35.0 8.9 30 142-171 54-83 (256)
102 3vmx_A Voltage-gated hydrogen 85.0 2.9 9.9E-05 28.5 6.1 42 126-174 3-44 (48)
103 2eqb_B RAB guanine nucleotide 84.8 4 0.00014 31.5 7.6 49 125-173 10-58 (97)
104 2wq1_A General control protein 84.4 1.5 5.2E-05 27.7 4.1 24 138-161 4-27 (33)
105 2wt7_B Transcription factor MA 84.4 2 7E-05 32.6 5.7 37 130-166 51-87 (90)
106 1m1j_C Fibrinogen gamma chain; 84.2 7.8 0.00027 36.4 10.9 60 110-169 74-133 (409)
107 1kd8_B GABH BLL, GCN4 acid bas 84.1 1.5 5.3E-05 28.2 4.1 23 139-161 6-28 (36)
108 3u06_A Protein claret segregat 84.0 3.6 0.00012 38.4 8.5 52 123-174 6-57 (412)
109 3c3f_A Alpha/beta peptide with 84.0 1.6 5.5E-05 27.7 4.1 24 138-161 5-28 (34)
110 1jcd_A Major outer membrane li 84.0 6 0.00021 27.2 7.4 43 129-171 6-48 (52)
111 3v86_A De novo design helix; c 83.9 0.99 3.4E-05 26.9 2.9 26 121-146 1-26 (27)
112 1c1g_A Tropomyosin; contractIl 83.9 8.8 0.0003 30.6 9.8 23 146-168 249-271 (284)
113 1dh3_A Transcription factor CR 83.6 4.2 0.00014 27.9 6.6 32 140-171 21-52 (55)
114 3iv1_A Tumor susceptibility ge 83.6 10 0.00036 28.1 9.2 46 123-168 28-73 (78)
115 3efg_A Protein SLYX homolog; x 83.1 3.8 0.00013 30.1 6.6 44 131-174 11-54 (78)
116 2zvf_A Alanyl-tRNA synthetase; 83.1 3 0.0001 33.3 6.6 48 118-165 5-56 (171)
117 3ghg_A Fibrinogen alpha chain; 82.8 1 3.5E-05 44.0 4.3 80 90-171 62-154 (562)
118 3nmd_A CGMP dependent protein 82.8 3.5 0.00012 30.2 6.2 24 148-171 40-63 (72)
119 1jcd_A Major outer membrane li 82.6 5.6 0.00019 27.3 6.8 44 122-165 6-49 (52)
120 1gmj_A ATPase inhibitor; coile 82.6 7.1 0.00024 29.4 8.0 31 138-168 48-78 (84)
121 1wt6_A Myotonin-protein kinase 82.6 12 0.00042 27.9 9.2 40 127-173 31-70 (81)
122 3swk_A Vimentin; cytoskeleton, 82.5 6.3 0.00021 29.2 7.7 31 143-173 51-81 (86)
123 3a7o_A Autophagy protein 16; c 82.4 8.1 0.00028 28.4 7.9 54 121-174 19-72 (75)
124 1uix_A RHO-associated kinase; 82.2 8.1 0.00028 28.2 7.9 48 125-172 2-49 (71)
125 1deq_A Fibrinogen (alpha chain 82.1 3.7 0.00013 38.6 7.6 14 89-102 64-77 (390)
126 3na7_A HP0958; flagellar bioge 82.1 7.3 0.00025 33.5 9.2 53 121-173 54-115 (256)
127 1x8y_A Lamin A/C; structural p 82.0 9.3 0.00032 28.2 8.5 50 122-171 30-79 (86)
128 1kd8_B GABH BLL, GCN4 acid bas 81.6 4.2 0.00014 26.2 5.4 27 122-148 3-29 (36)
129 1uo4_A General control protein 81.6 2.3 7.7E-05 27.1 4.1 23 139-161 6-28 (34)
130 2bni_A General control protein 81.3 2.3 8E-05 27.0 4.1 24 138-161 5-28 (34)
131 4h22_A Leucine-rich repeat fli 81.0 9 0.00031 29.8 8.3 52 124-175 27-78 (103)
132 3m48_A General control protein 80.6 1.9 6.6E-05 27.3 3.5 24 146-169 5-28 (33)
133 3vmx_A Voltage-gated hydrogen 80.5 6.9 0.00024 26.6 6.6 17 123-139 7-23 (48)
134 2v66_B Nuclear distribution pr 80.5 15 0.00052 28.8 9.6 39 116-154 31-69 (111)
135 3mq7_A Bone marrow stromal ant 80.2 16 0.00056 29.1 9.7 30 143-172 73-102 (121)
136 1lwu_C Fibrinogen gamma chain; 80.2 4.2 0.00014 37.2 7.2 52 121-172 6-57 (323)
137 1kd8_A GABH AIV, GCN4 acid bas 80.2 3.4 0.00012 26.6 4.6 29 122-150 3-31 (36)
138 4dzn_A Coiled-coil peptide CC- 80.1 3.8 0.00013 25.4 4.7 25 144-168 5-29 (33)
139 2w83_C C-JUN-amino-terminal ki 80.0 13 0.00045 27.5 8.5 32 142-173 38-69 (77)
140 2w83_C C-JUN-amino-terminal ki 80.0 11 0.00036 28.1 8.0 43 127-169 9-58 (77)
141 3oja_A Leucine-rich immune mol 79.9 9.9 0.00034 34.9 9.7 53 121-173 422-474 (487)
142 1gk4_A Vimentin; intermediate 79.8 11 0.00037 27.6 8.1 50 122-171 28-77 (84)
143 3vkg_A Dynein heavy chain, cyt 79.8 6.1 0.00021 45.9 9.8 38 135-172 2036-2073(3245)
144 2j5u_A MREC protein; bacterial 79.7 0.71 2.4E-05 40.4 1.9 38 132-173 24-61 (255)
145 2hy6_A General control protein 79.7 2.9 9.8E-05 26.6 4.1 24 138-161 5-28 (34)
146 2d4y_A HAP1, flagellar HOOK-as 79.2 9.8 0.00033 35.4 9.6 77 88-166 44-121 (463)
147 2ocy_A RAB guanine nucleotide 79.1 9.9 0.00034 31.4 8.5 23 115-137 8-30 (154)
148 2v71_A Nuclear distribution pr 79.0 13 0.00043 31.7 9.3 36 118-153 86-121 (189)
149 3trt_A Vimentin; cytoskeleton, 78.6 8.7 0.0003 27.2 7.1 20 154-173 55-74 (77)
150 2xv5_A Lamin-A/C; structural p 78.2 11 0.00038 27.4 7.6 51 122-172 7-57 (74)
151 1wle_A Seryl-tRNA synthetase; 78.1 9.1 0.00031 36.7 9.2 52 122-173 79-148 (501)
152 3lay_A Zinc resistance-associa 78.1 18 0.0006 30.2 9.9 35 141-178 113-147 (175)
153 1dip_A Delta-sleep-inducing pe 78.1 2.2 7.4E-05 31.7 3.7 28 135-162 16-43 (78)
154 3a2a_A Voltage-gated hydrogen 77.4 4.8 0.00016 28.3 5.1 44 125-175 9-52 (58)
155 3tnu_B Keratin, type II cytosk 77.1 13 0.00045 29.0 8.4 26 120-145 43-68 (129)
156 2j5u_A MREC protein; bacterial 77.1 1.7 5.8E-05 38.0 3.5 45 117-165 16-60 (255)
157 1deb_A APC protein, adenomatou 77.1 6.9 0.00024 27.1 5.8 36 135-170 4-39 (54)
158 3o0z_A RHO-associated protein 77.0 32 0.0011 28.8 12.7 88 87-174 64-159 (168)
159 3ibp_A Chromosome partition pr 76.9 15 0.00051 33.5 9.7 76 82-169 21-104 (302)
160 2oxj_A Hybrid alpha/beta pepti 76.9 3.5 0.00012 26.2 3.9 25 122-146 3-27 (34)
161 3vp9_A General transcriptional 76.8 4.1 0.00014 31.2 5.1 49 119-170 39-90 (92)
162 3qne_A Seryl-tRNA synthetase, 76.6 17 0.0006 34.8 10.6 52 122-173 42-103 (485)
163 2dq0_A Seryl-tRNA synthetase; 76.3 19 0.00063 34.0 10.6 53 122-174 40-102 (455)
164 2oto_A M protein; helical coil 76.2 12 0.00041 30.0 8.1 26 125-150 55-80 (155)
165 1ic2_A Tropomyosin alpha chain 76.1 19 0.00065 26.0 8.5 6 138-143 24-29 (81)
166 1wlq_A Geminin; coiled-coil; 2 76.0 11 0.00037 28.3 7.1 26 135-160 39-64 (83)
167 3c3g_A Alpha/beta peptide with 75.8 5.3 0.00018 25.2 4.5 26 122-147 2-27 (33)
168 3he4_B Synzip5; heterodimeric 75.3 11 0.00039 24.7 6.2 33 122-154 5-37 (46)
169 2ocy_A RAB guanine nucleotide 75.2 11 0.00037 31.2 7.6 12 110-121 13-24 (154)
170 1lwu_C Fibrinogen gamma chain; 75.2 6.3 0.00022 36.0 6.8 48 127-174 5-52 (323)
171 3u1c_A Tropomyosin alpha-1 cha 75.1 18 0.00063 27.3 8.5 20 129-148 39-58 (101)
172 2v4h_A NF-kappa-B essential mo 74.9 19 0.00064 28.4 8.6 60 115-174 40-109 (110)
173 1wle_A Seryl-tRNA synthetase; 74.9 18 0.00062 34.6 10.3 27 124-150 74-100 (501)
174 2wq1_A General control protein 74.8 5.8 0.0002 25.0 4.5 26 122-147 2-27 (33)
175 3mq9_A Bone marrow stromal ant 74.6 14 0.00049 33.6 9.2 22 151-172 446-467 (471)
176 2zqm_A Prefoldin beta subunit 74.4 24 0.00082 26.2 9.2 37 138-174 74-110 (117)
177 3u59_A Tropomyosin beta chain; 74.4 20 0.00068 26.9 8.5 17 131-147 41-57 (101)
178 4emc_A Monopolin complex subun 74.3 13 0.00043 31.9 8.0 40 118-157 18-57 (190)
179 3k29_A Putative uncharacterize 74.3 27 0.00093 29.3 9.9 45 90-139 53-97 (169)
180 3tnu_A Keratin, type I cytoske 74.3 12 0.00042 29.3 7.5 24 121-144 46-69 (131)
181 3iv1_A Tumor susceptibility ge 74.2 24 0.00082 26.1 8.8 26 148-173 46-71 (78)
182 3c3f_A Alpha/beta peptide with 73.9 4.6 0.00016 25.6 3.9 26 122-147 3-28 (34)
183 1uii_A Geminin; human, DNA rep 73.6 14 0.00049 27.7 7.3 44 119-162 27-74 (83)
184 2zxx_A Geminin; coiled-coil, c 73.5 12 0.00041 27.8 6.8 29 135-163 35-63 (79)
185 2lw1_A ABC transporter ATP-bin 73.3 14 0.00047 27.1 7.1 49 124-172 19-73 (89)
186 1uo4_A General control protein 73.0 4.6 0.00016 25.7 3.7 26 122-147 3-28 (34)
187 1a93_B MAX protein, coiled coi 72.9 5.4 0.00019 25.4 4.1 12 149-160 15-26 (34)
188 2r2v_A GCN4 leucine zipper; co 72.9 5.6 0.00019 25.3 4.1 24 138-161 5-28 (34)
189 3w03_C DNA repair protein XRCC 72.7 6.7 0.00023 33.3 6.0 29 114-142 146-174 (184)
190 1deq_A Fibrinogen (alpha chain 72.5 10 0.00035 35.7 7.6 44 121-164 114-157 (390)
191 3tnu_B Keratin, type II cytosk 72.3 12 0.00042 29.1 7.1 44 123-166 78-121 (129)
192 3jsv_C NF-kappa-B essential mo 71.7 21 0.00072 27.3 8.0 59 115-173 11-79 (94)
193 3tnu_A Keratin, type I cytoske 71.5 13 0.00045 29.1 7.1 44 123-166 80-123 (131)
194 1uii_A Geminin; human, DNA rep 71.3 14 0.00049 27.7 6.8 32 115-146 41-72 (83)
195 1s1c_X RHO-associated, coiled- 71.1 19 0.00065 26.2 7.3 32 124-155 3-34 (71)
196 3gpv_A Transcriptional regulat 71.1 8.7 0.0003 30.5 6.0 36 138-173 99-134 (148)
197 2dq0_A Seryl-tRNA synthetase; 71.0 19 0.00066 33.8 9.3 27 138-164 73-99 (455)
198 2oqq_A Transcription factor HY 71.0 16 0.00053 24.3 6.1 32 130-161 6-37 (42)
199 2ve7_C Kinetochore protein NUF 70.9 4.8 0.00016 35.2 4.8 59 111-173 122-180 (250)
200 3gp4_A Transcriptional regulat 70.6 19 0.00064 28.4 7.9 42 132-173 86-127 (142)
201 2wvr_A Geminin; DNA replicatio 70.6 16 0.00054 31.7 7.8 53 120-172 97-153 (209)
202 1fxk_A Prefoldin; archaeal pro 70.5 29 0.00098 25.4 9.7 12 125-136 13-24 (107)
203 1m1j_B Fibrinogen beta chain; 70.4 60 0.002 31.0 12.6 21 153-173 173-193 (464)
204 4etp_A Kinesin-like protein KA 70.4 13 0.00043 34.5 7.8 54 120-173 10-63 (403)
205 3a2a_A Voltage-gated hydrogen 70.3 13 0.00043 26.1 5.9 27 116-142 7-33 (58)
206 1ses_A Seryl-tRNA synthetase; 70.1 21 0.00071 33.2 9.3 53 122-174 37-97 (421)
207 3q0x_A Centriole protein; cent 70.1 23 0.00077 30.9 8.9 63 108-170 159-221 (228)
208 3bas_A Myosin heavy chain, str 70.0 30 0.001 25.5 9.4 22 153-174 61-82 (89)
209 2zqm_A Prefoldin beta subunit 69.9 14 0.00049 27.4 6.8 67 90-157 39-107 (117)
210 2bni_A General control protein 69.8 5.9 0.0002 25.2 3.7 26 122-147 3-28 (34)
211 1s94_A S-syntaxin; three helix 69.8 18 0.0006 29.3 7.7 12 89-100 6-17 (180)
212 2wvr_A Geminin; DNA replicatio 69.7 19 0.00066 31.1 8.2 32 115-146 110-141 (209)
213 3s9g_A Protein hexim1; cyclin 69.5 21 0.00073 27.7 7.6 45 130-174 40-91 (104)
214 4emc_A Monopolin complex subun 69.5 8.5 0.00029 32.9 5.9 41 118-158 25-65 (190)
215 4b4t_K 26S protease regulatory 69.4 6.8 0.00023 36.7 5.8 45 125-169 47-91 (428)
216 3qne_A Seryl-tRNA synthetase, 69.4 22 0.00074 34.1 9.3 30 138-167 75-104 (485)
217 3qh9_A Liprin-beta-2; coiled-c 69.3 30 0.001 25.8 8.1 47 127-173 19-65 (81)
218 1m1j_A Fibrinogen alpha subuni 69.1 18 0.00061 34.9 8.6 62 90-151 63-128 (491)
219 1wt6_A Myotonin-protein kinase 68.9 29 0.00099 25.9 8.0 34 122-155 40-73 (81)
220 2hy6_A General control protein 68.6 6.5 0.00022 25.0 3.7 26 122-147 3-28 (34)
221 1t6f_A Geminin; coiled-coil, c 68.4 13 0.00043 24.0 5.1 27 128-154 8-34 (37)
222 3vkg_A Dynein heavy chain, cyt 68.1 16 0.00056 42.5 9.4 43 116-158 2024-2066(3245)
223 3q8t_A Beclin-1; autophagy, AT 68.1 36 0.0012 25.6 9.5 16 156-171 75-90 (96)
224 3w03_C DNA repair protein XRCC 68.1 16 0.00054 31.0 7.3 31 121-151 146-176 (184)
225 3a5t_A Transcription factor MA 67.9 0.22 7.4E-06 39.2 -4.0 34 140-173 57-90 (107)
226 4dzn_A Coiled-coil peptide CC- 67.7 11 0.00038 23.3 4.5 21 125-145 7-27 (33)
227 3mov_A Lamin-B1; LMNB1, B-type 67.5 33 0.0011 25.8 8.3 46 124-169 41-86 (95)
228 1wlq_A Geminin; coiled-coil; 2 67.1 20 0.00067 26.9 6.8 30 115-144 33-62 (83)
229 3l4q_C Phosphatidylinositol 3- 66.9 39 0.0013 28.3 9.3 68 110-177 90-160 (170)
230 3jsv_C NF-kappa-B essential mo 66.6 40 0.0014 25.8 8.6 26 150-175 63-88 (94)
231 1zme_C Proline utilization tra 66.3 3.7 0.00013 27.9 2.5 24 120-143 44-67 (70)
232 2wuj_A Septum site-determining 66.1 5.2 0.00018 27.5 3.2 19 121-139 28-46 (57)
233 1nlw_A MAD protein, MAX dimeri 65.8 16 0.00053 26.7 6.0 30 143-172 49-78 (80)
234 3ghg_C Fibrinogen gamma chain; 65.8 57 0.0019 30.8 11.2 50 115-164 79-128 (411)
235 2zxx_A Geminin; coiled-coil, c 65.6 24 0.00081 26.2 6.9 32 115-146 29-60 (79)
236 4b4t_M 26S protease regulatory 65.5 6.3 0.00021 37.0 4.7 44 136-179 34-77 (434)
237 3u06_A Protein claret segregat 65.4 17 0.00058 33.9 7.6 52 122-173 12-63 (412)
238 4e61_A Protein BIM1; EB1-like 65.2 40 0.0014 26.3 8.5 35 124-158 8-42 (106)
239 2xzr_A Immunoglobulin-binding 65.0 42 0.0015 26.1 8.5 63 110-172 39-107 (114)
240 1hs7_A Syntaxin VAM3; UP-and-D 64.9 12 0.0004 28.7 5.3 60 114-173 11-75 (97)
241 2xv5_A Lamin-A/C; structural p 64.0 38 0.0013 24.5 8.0 49 125-173 3-51 (74)
242 4dyl_A Tyrosine-protein kinase 63.9 62 0.0021 29.4 11.0 34 143-176 361-394 (406)
243 1ses_A Seryl-tRNA synthetase; 63.8 22 0.00076 33.0 8.1 55 120-174 28-90 (421)
244 1fmh_A General control protein 63.4 16 0.00054 22.6 4.6 25 123-147 4-28 (33)
245 1gk4_A Vimentin; intermediate 63.4 40 0.0014 24.5 8.5 19 148-166 33-51 (84)
246 1l8d_A DNA double-strand break 63.3 43 0.0015 24.8 9.7 35 138-172 68-102 (112)
247 3cve_A Homer protein homolog 1 63.1 41 0.0014 24.5 8.1 43 117-159 4-46 (72)
248 3he5_A Synzip1; heterodimeric 62.4 31 0.0011 22.9 6.7 18 130-147 6-23 (49)
249 4fla_A Regulation of nuclear P 62.4 47 0.0016 27.0 8.8 55 120-174 86-147 (152)
250 1l8d_A DNA double-strand break 61.8 17 0.00059 27.0 5.8 39 139-177 8-46 (112)
251 3trt_A Vimentin; cytoskeleton, 61.8 28 0.00095 24.5 6.6 37 132-168 40-76 (77)
252 3onj_A T-snare VTI1; helix, HA 61.6 35 0.0012 25.4 7.4 15 118-132 46-60 (97)
253 2wuj_A Septum site-determining 61.4 8.3 0.00028 26.4 3.5 23 148-170 34-56 (57)
254 1joc_A EEA1, early endosomal a 60.9 53 0.0018 25.5 8.7 51 108-162 3-53 (125)
255 1fxk_C Protein (prefoldin); ar 60.6 26 0.00089 26.9 6.8 33 122-154 3-35 (133)
256 2ve7_C Kinetochore protein NUF 60.2 4.3 0.00015 35.5 2.4 66 108-173 136-201 (250)
257 1nkp_A C-MYC, MYC proto-oncoge 59.9 26 0.00089 25.8 6.3 31 144-174 55-85 (88)
258 2ve7_A Kinetochore protein HEC 59.7 12 0.0004 33.6 5.2 28 128-155 186-213 (315)
259 1a93_B MAX protein, coiled coi 59.6 13 0.00045 23.6 3.9 15 140-154 13-27 (34)
260 1lrz_A FEMA, factor essential 59.2 31 0.0011 31.4 8.0 24 120-143 247-270 (426)
261 3viq_B Mating-type switching p 59.0 38 0.0013 25.4 7.1 25 124-148 5-29 (85)
262 2aze_A Transcription factor DP 58.9 30 0.001 28.6 7.1 45 127-171 5-49 (155)
263 2p22_A Suppressor protein STP2 58.8 23 0.00078 29.7 6.5 46 126-171 48-93 (174)
264 1zbt_A RF-1, peptide chain rel 58.8 37 0.0013 31.7 8.5 91 86-179 18-118 (371)
265 2w6a_A ARF GTPase-activating p 58.7 46 0.0016 23.6 7.3 35 136-170 22-56 (63)
266 2zvf_A Alanyl-tRNA synthetase; 58.4 7.2 0.00025 31.0 3.3 25 119-143 31-55 (171)
267 3rrk_A V-type ATPase 116 kDa s 58.3 60 0.002 28.5 9.6 11 90-100 72-82 (357)
268 1m1j_C Fibrinogen gamma chain; 58.2 40 0.0014 31.6 8.7 44 131-174 88-131 (409)
269 2dq3_A Seryl-tRNA synthetase; 58.0 24 0.00082 32.8 7.2 51 123-173 40-100 (425)
270 3cvf_A Homer-3, homer protein 57.7 31 0.0011 25.5 6.3 41 118-158 11-51 (79)
271 3a7o_A Autophagy protein 16; c 57.7 40 0.0014 24.7 6.7 41 122-162 34-74 (75)
272 3d5a_X RF1, peptide chain rele 57.6 77 0.0026 29.3 10.4 94 86-179 4-100 (354)
273 3ni0_A Bone marrow stromal ant 57.4 64 0.0022 24.9 9.7 15 158-172 70-84 (99)
274 3oa7_A Head morphogenesis prot 57.4 28 0.00097 30.0 6.9 34 135-168 38-71 (206)
275 1t3u_A Conserved hypothetical 57.3 56 0.0019 24.1 8.7 59 87-149 32-90 (104)
276 1zhc_A Hypothetical protein HP 57.0 20 0.00067 25.9 5.1 21 142-162 45-65 (76)
277 3ra3_B P2F; coiled coil domain 56.8 9 0.00031 22.9 2.6 14 132-145 5-18 (28)
278 2dq3_A Seryl-tRNA synthetase; 56.7 21 0.00073 33.1 6.6 56 119-174 29-94 (425)
279 3oa7_A Head morphogenesis prot 56.7 38 0.0013 29.2 7.6 45 117-161 27-71 (206)
280 4e61_A Protein BIM1; EB1-like 56.7 25 0.00085 27.4 5.9 30 122-151 13-42 (106)
281 3lss_A Seryl-tRNA synthetase; 56.6 45 0.0015 31.9 8.9 28 147-174 109-137 (484)
282 3rrk_A V-type ATPase 116 kDa s 56.6 51 0.0017 29.0 8.8 54 119-172 225-279 (357)
283 3mq9_A Bone marrow stromal ant 56.6 29 0.00098 31.6 7.4 27 141-167 443-469 (471)
284 3bbp_D GRIP and coiled-coil do 56.5 16 0.00054 26.7 4.4 17 152-168 47-63 (71)
285 3he4_A Synzip6; heterodimeric 56.2 6.3 0.00021 27.0 2.1 34 136-169 19-52 (56)
286 2r2v_A GCN4 leucine zipper; co 55.7 23 0.00078 22.5 4.5 24 123-146 4-27 (34)
287 2aze_B Transcription factor E2 55.0 29 0.00099 26.6 6.1 34 122-155 8-41 (106)
288 2ke4_A CDC42-interacting prote 54.4 68 0.0023 24.3 8.3 24 77-101 8-31 (98)
289 2e7s_A RAB guanine nucleotide 53.9 43 0.0015 27.1 7.1 8 165-172 70-77 (135)
290 2w6b_A RHO guanine nucleotide 53.9 43 0.0015 23.3 6.1 25 119-143 9-33 (56)
291 1lq7_A Alpha3W; three helix bu 53.9 54 0.0019 23.0 7.0 37 137-173 28-66 (67)
292 1fxk_C Protein (prefoldin); ar 53.6 60 0.002 24.8 7.8 38 115-155 86-123 (133)
293 2lf0_A Uncharacterized protein 53.3 26 0.0009 28.0 5.6 46 125-170 8-58 (123)
294 1vcs_A Vesicle transport throu 53.1 16 0.00054 27.6 4.2 28 109-136 34-61 (102)
295 3lss_A Seryl-tRNA synthetase; 52.8 67 0.0023 30.7 9.4 17 157-173 113-129 (484)
296 2wg5_A General control protein 52.6 12 0.00042 28.6 3.5 25 155-179 14-38 (109)
297 3muj_A Transcription factor CO 52.4 21 0.0007 29.1 5.0 37 89-125 95-133 (138)
298 2l5g_B Putative uncharacterize 52.2 39 0.0013 22.3 5.4 30 125-154 7-36 (42)
299 1zxa_A CGMP-dependent protein 52.1 20 0.00068 25.8 4.3 33 140-172 24-56 (67)
300 2wg5_A General control protein 52.1 14 0.00047 28.3 3.8 26 144-169 10-35 (109)
301 3onj_A T-snare VTI1; helix, HA 52.0 70 0.0024 23.7 8.3 31 109-139 30-60 (97)
302 2js5_A Uncharacterized protein 51.6 67 0.0023 23.3 8.3 53 122-174 5-64 (71)
303 1fxk_A Prefoldin; archaeal pro 51.1 68 0.0023 23.3 9.7 42 112-153 57-98 (107)
304 3q4f_C DNA repair protein XRCC 51.0 20 0.00067 30.6 4.8 27 115-141 156-182 (186)
305 2pnv_A Small conductance calci 50.8 35 0.0012 22.5 5.1 32 118-149 7-38 (43)
306 3mud_A DNA repair protein XRCC 50.4 54 0.0018 27.6 7.4 25 115-139 130-154 (175)
307 2aze_B Transcription factor E2 50.2 21 0.00073 27.4 4.6 32 143-174 8-39 (106)
308 3a5t_A Transcription factor MA 50.0 0.25 8.7E-06 38.8 -6.5 40 135-174 59-98 (107)
309 2zdi_C Prefoldin subunit alpha 49.4 55 0.0019 25.8 7.1 37 115-154 96-132 (151)
310 4b4t_J 26S protease regulatory 49.1 18 0.00062 33.7 4.8 45 128-179 26-70 (405)
311 1p9i_A Cortexillin I/GCN4 hybr 48.4 19 0.00065 21.9 3.2 23 125-147 4-26 (31)
312 3l4q_C Phosphatidylinositol 3- 47.9 76 0.0026 26.4 8.0 15 87-101 33-47 (170)
313 1m1j_A Fibrinogen alpha subuni 47.9 50 0.0017 31.8 7.6 47 119-165 110-156 (491)
314 3csx_A Putative uncharacterize 47.7 63 0.0022 24.0 6.6 54 121-174 16-76 (81)
315 1fzc_C Fibrin; blood coagulati 47.3 15 0.0005 33.5 3.8 45 128-172 5-49 (319)
316 1x79_B RAB GTPase binding effe 47.2 1E+02 0.0034 24.1 8.6 10 124-133 10-19 (112)
317 3plt_A Sphingolipid long chain 47.2 1.1E+02 0.0037 26.8 9.2 53 82-149 108-160 (234)
318 4gkw_A Spindle assembly abnorm 47.1 1.1E+02 0.0037 25.1 8.5 51 122-172 13-77 (167)
319 3ra3_A P1C; coiled coil domain 46.8 12 0.00041 22.4 2.1 20 131-150 4-23 (28)
320 4dci_A Uncharacterized protein 46.1 1.2E+02 0.0041 24.7 10.1 67 108-174 24-103 (150)
321 2qyw_A Vesicle transport throu 45.8 35 0.0012 25.7 5.1 43 115-157 58-101 (102)
322 1lwu_B Fibrinogen beta chain; 45.5 37 0.0013 30.8 6.1 24 142-165 29-52 (323)
323 3hhm_B NISH2 P85alpha; PI3KCA, 45.4 67 0.0023 29.5 8.0 40 125-164 210-256 (373)
324 3he5_B Synzip2; heterodimeric 44.9 68 0.0023 21.5 7.3 14 158-171 34-47 (52)
325 3ol1_A Vimentin; structural ge 44.6 1.1E+02 0.0036 23.6 9.7 18 94-114 22-39 (119)
326 2no2_A HIP-I, huntingtin-inter 44.6 1E+02 0.0035 23.5 8.8 18 116-133 25-42 (107)
327 1dip_A Delta-sleep-inducing pe 44.5 18 0.0006 26.8 3.1 29 140-168 14-42 (78)
328 1use_A VAsp, vasodilator-stimu 44.5 60 0.0021 21.7 5.5 24 151-174 18-42 (45)
329 3lay_A Zinc resistance-associa 44.5 1.1E+02 0.0037 25.4 8.4 15 159-173 117-131 (175)
330 1grj_A GREA protein; transcrip 43.8 1.2E+02 0.004 24.3 8.3 57 120-176 9-74 (158)
331 3mud_A DNA repair protein XRCC 43.6 85 0.0029 26.4 7.6 34 125-158 133-166 (175)
332 2ve7_A Kinetochore protein HEC 43.5 26 0.00088 31.4 4.7 23 135-157 186-208 (315)
333 2p22_A Suppressor protein STP2 43.2 36 0.0012 28.5 5.3 43 132-174 47-92 (174)
334 1gqe_A Release factor 2, RF2; 42.0 91 0.0031 28.9 8.2 19 152-170 98-116 (365)
335 1j1d_B Troponin T, TNT; THIN f 42.0 1E+02 0.0034 23.8 7.3 26 149-174 64-89 (106)
336 1g1e_B SIN3A; four-helix bundl 42.0 57 0.0019 24.1 5.7 18 114-131 9-26 (89)
337 2efr_A General control protein 41.8 1.4E+02 0.0049 24.3 9.7 54 120-173 56-116 (155)
338 2xu6_A MDV1 coiled coil; prote 41.7 89 0.0031 22.7 6.5 50 118-167 19-68 (72)
339 4ani_A Protein GRPE; chaperone 41.2 55 0.0019 28.1 6.2 34 122-155 61-94 (213)
340 2zdi_C Prefoldin subunit alpha 40.7 61 0.0021 25.5 6.1 47 125-171 96-142 (151)
341 2p4v_A Transcription elongatio 40.0 1.3E+02 0.0046 24.0 8.1 57 120-176 9-74 (158)
342 3hhm_B NISH2 P85alpha; PI3KCA, 39.6 57 0.0019 30.0 6.5 14 88-101 143-156 (373)
343 1a93_A Coiled coil, LZ, MYC pr 39.6 52 0.0018 20.7 4.3 25 125-149 5-29 (34)
344 4b4t_J 26S protease regulatory 39.3 40 0.0014 31.4 5.5 39 122-160 27-65 (405)
345 3azd_A Short alpha-tropomyosin 39.2 12 0.00041 23.8 1.3 27 120-146 4-30 (37)
346 1m1j_B Fibrinogen beta chain; 38.9 1.6E+02 0.0056 28.0 9.7 22 144-165 171-192 (464)
347 1x79_B RAB GTPase binding effe 38.7 1.2E+02 0.0041 23.7 7.3 15 123-137 16-30 (112)
348 2e50_A Protein SET; histone ch 38.6 1.1E+02 0.0039 26.0 7.8 40 114-156 27-66 (225)
349 4b4t_M 26S protease regulatory 38.5 24 0.00083 33.0 3.9 29 132-160 37-65 (434)
350 1am9_A Srebp-1A, protein (ster 38.3 44 0.0015 24.1 4.5 21 152-172 54-74 (82)
351 1zhc_A Hypothetical protein HP 38.3 1.1E+02 0.0037 21.9 7.3 24 149-172 45-68 (76)
352 1g6u_A Domain swapped dimer; d 38.3 85 0.0029 20.7 5.8 11 124-134 4-14 (48)
353 1ytz_T Troponin T; muscle, THI 38.2 82 0.0028 24.3 6.2 24 151-174 66-89 (107)
354 3plt_A Sphingolipid long chain 38.2 1.1E+02 0.0038 26.7 7.8 43 129-171 106-154 (234)
355 3kin_B Kinesin heavy chain; mo 38.2 46 0.0016 25.7 4.9 23 129-151 91-113 (117)
356 3ni0_A Bone marrow stromal ant 37.8 1.4E+02 0.0047 23.0 7.3 21 150-170 69-89 (99)
357 3uux_B Mitochondrial division 37.5 1.4E+02 0.0048 26.3 8.3 43 122-164 179-221 (242)
358 2q6q_A Spindle POLE BODY compo 37.5 1.2E+02 0.004 22.1 6.7 47 125-171 1-47 (74)
359 1e91_A Paired amphipathic heli 37.4 24 0.00082 25.9 2.9 36 113-148 5-40 (85)
360 2er8_A Regulatory protein Leu3 37.4 18 0.0006 24.7 2.1 21 120-140 49-69 (72)
361 2no2_A HIP-I, huntingtin-inter 37.3 1.4E+02 0.0047 22.8 12.0 27 146-172 73-99 (107)
362 2c5k_T Syntaxin TLG1, T-snare 37.1 61 0.0021 24.2 5.3 53 120-172 36-92 (95)
363 1pd7_B MAD1; PAH2, SIN3, eukar 36.6 39 0.0013 20.2 3.2 21 108-128 1-21 (26)
364 1ytz_T Troponin T; muscle, THI 35.2 1.3E+02 0.0046 23.1 7.0 36 120-155 49-84 (107)
365 1t3j_A Mitofusin 1; coiled coi 35.0 57 0.0019 24.9 4.8 9 158-166 81-89 (96)
366 2xnx_M M protein, M1-BC1; cell 34.9 19 0.00064 29.6 2.2 41 132-172 85-125 (146)
367 3he4_A Synzip6; heterodimeric 34.9 89 0.003 21.2 5.2 30 125-154 22-51 (56)
368 2c5k_T Syntaxin TLG1, T-snare 34.9 1.4E+02 0.0048 22.2 7.2 15 121-135 44-58 (95)
369 3ghg_C Fibrinogen gamma chain; 34.2 1.7E+02 0.0058 27.5 8.9 43 132-174 89-131 (411)
370 2p2u_A HOST-nuclease inhibitor 34.2 1.9E+02 0.0064 23.5 9.2 53 115-173 18-70 (171)
371 1t3j_A Mitofusin 1; coiled coi 34.1 1.5E+02 0.0053 22.5 8.0 13 160-172 76-88 (96)
372 3gpv_A Transcriptional regulat 33.5 1.7E+02 0.0058 22.8 8.0 36 140-175 94-129 (148)
373 4ani_A Protein GRPE; chaperone 33.3 1.3E+02 0.0046 25.7 7.4 7 226-232 200-206 (213)
374 3sjb_C Golgi to ER traffic pro 33.2 1.4E+02 0.0047 22.7 6.6 19 118-136 21-39 (93)
375 1fmh_A General control protein 32.8 74 0.0025 19.6 4.1 15 155-169 15-29 (33)
376 3nr7_A DNA-binding protein H-N 32.1 1.5E+02 0.0052 21.8 8.3 62 116-177 8-74 (86)
377 2q12_A DIP13 alpha, DCC-intera 31.9 2.2E+02 0.0077 23.7 9.6 44 138-182 221-264 (265)
378 1nfn_A Apolipoprotein E3; lipi 31.8 2.2E+02 0.0074 23.5 11.3 83 89-173 70-161 (191)
379 1j1d_B Troponin T, TNT; THIN f 31.8 88 0.003 24.1 5.5 37 119-155 48-84 (106)
380 4ad8_A DNA repair protein RECN 31.3 2E+02 0.0067 26.6 8.8 13 156-168 228-240 (517)
381 3swk_A Vimentin; cytoskeleton, 31.3 1E+02 0.0035 22.5 5.6 32 122-153 2-33 (86)
382 2j69_A Bacterial dynamin-like 31.2 94 0.0032 30.4 6.9 39 130-168 355-393 (695)
383 4ath_A MITF, microphthalmia-as 30.8 97 0.0033 23.0 5.3 14 130-143 59-72 (83)
384 1gmj_A ATPase inhibitor; coile 30.6 1.7E+02 0.0057 21.9 6.6 8 160-167 63-70 (84)
385 4b4t_L 26S protease subunit RP 30.6 33 0.0011 32.1 3.4 27 152-178 76-102 (437)
386 3viq_B Mating-type switching p 30.2 52 0.0018 24.6 3.8 41 121-162 9-62 (85)
387 3ibp_A Chromosome partition pr 30.2 3.1E+02 0.011 24.8 9.8 28 152-179 80-107 (302)
388 1gax_A Valrs, valyl-tRNA synth 29.8 1.1E+02 0.0039 30.9 7.4 19 156-174 843-861 (862)
389 2xzr_A Immunoglobulin-binding 29.6 2E+02 0.0067 22.3 9.5 50 115-164 57-106 (114)
390 3fs3_A Nucleosome assembly pro 29.5 1.7E+02 0.0057 27.1 7.8 38 115-155 51-88 (359)
391 1zxa_A CGMP-dependent protein 29.5 84 0.0029 22.5 4.6 26 129-154 27-52 (67)
392 3sjb_C Golgi to ER traffic pro 29.1 1.5E+02 0.0051 22.5 6.2 16 135-150 24-39 (93)
393 2pms_C Pneumococcal surface pr 29.0 1.1E+02 0.0037 24.4 5.7 16 158-173 106-121 (125)
394 3f6n_A Virion-associated prote 28.7 1.6E+02 0.0056 23.5 6.6 25 123-147 5-29 (129)
395 3sja_C Golgi to ER traffic pro 28.6 1.6E+02 0.0054 20.9 7.0 52 120-173 6-57 (65)
396 2yko_A LINE-1 ORF1P; RNA-bindi 28.5 1.2E+02 0.004 26.6 6.3 39 116-154 9-47 (233)
397 4i0x_B ESAT-6-like protein MAB 28.4 1.7E+02 0.0057 21.1 7.9 15 159-173 71-85 (103)
398 3p01_A Two-component response 28.3 48 0.0016 25.2 3.5 61 112-173 2-62 (184)
399 2aze_A Transcription factor DP 28.3 95 0.0032 25.6 5.4 32 142-173 6-37 (155)
400 2de0_X Alpha-(1,6)-fucosyltran 28.1 1.7E+02 0.0059 27.9 8.0 57 81-139 49-108 (526)
401 1gs9_A Apolipoprotein E, APOE4 27.6 2.4E+02 0.0083 22.8 11.9 83 88-172 69-160 (165)
402 2i1j_A Moesin; FERM, coiled-co 27.2 15 0.00052 35.5 0.4 10 163-172 406-415 (575)
403 1x4t_A Hypothetical protein LO 27.1 2.1E+02 0.007 21.7 8.2 24 154-177 58-81 (92)
404 1j1e_C Troponin I, TNI; THIN f 27.0 2.8E+02 0.0096 23.3 9.8 49 82-136 33-81 (180)
405 3q0x_A Centriole protein; cent 26.8 2.9E+02 0.0099 23.9 8.5 31 126-156 184-214 (228)
406 2f23_A Anti-cleavage anti-GREA 26.6 2.4E+02 0.0081 22.3 7.8 57 120-176 10-74 (156)
407 3gwk_C SAG1039, putative uncha 26.5 1.7E+02 0.0057 20.4 7.9 21 152-172 59-79 (98)
408 3tul_A Cell invasion protein S 26.4 2.7E+02 0.0093 22.9 8.0 30 114-143 63-92 (158)
409 3okq_A BUD site selection prot 26.3 2.6E+02 0.0089 22.7 8.3 12 140-151 60-71 (141)
410 1t6f_A Geminin; coiled-coil, c 26.3 1.3E+02 0.0045 19.2 5.5 13 155-167 21-33 (37)
411 1a93_A Coiled coil, LZ, MYC pr 26.3 93 0.0032 19.6 3.8 28 139-166 5-32 (34)
412 2gd5_A Charged multivesicular 26.0 1.6E+02 0.0055 23.7 6.5 22 125-146 26-47 (179)
413 2gkw_A TNF receptor-associated 25.7 1.1E+02 0.0038 24.7 5.4 31 123-153 3-33 (192)
414 2lw1_A ABC transporter ATP-bin 25.6 1.9E+02 0.0065 20.8 8.1 11 127-137 29-39 (89)
415 2yo3_A General control protein 25.5 94 0.0032 27.8 5.2 43 123-172 219-261 (268)
416 3caz_A BAR protein; thermo-aci 25.2 1.3E+02 0.0045 26.2 5.9 62 87-152 52-123 (294)
417 1d7m_A Cortexillin I; coiled-c 24.7 2.3E+02 0.008 21.6 8.0 50 125-174 2-51 (101)
418 3ghg_B Fibrinogen beta chain; 24.4 1.5E+02 0.005 28.4 6.6 22 152-173 167-188 (461)
419 3kqg_A Langerin, C-type lectin 24.2 90 0.0031 24.1 4.5 6 177-182 50-55 (182)
420 2nrj_A HBL B protein; enteroto 24.1 1.8E+02 0.0061 26.2 6.9 14 159-172 180-193 (346)
421 1j1d_C Troponin I, TNI; THIN f 24.0 2.8E+02 0.0094 22.1 9.9 61 111-171 20-102 (133)
422 2ke4_A CDC42-interacting prote 23.8 2.3E+02 0.008 21.2 6.5 25 149-173 63-87 (98)
423 2oa5_A Hypothetical protein BQ 23.4 44 0.0015 26.3 2.3 21 123-143 11-31 (110)
424 1r8e_A Multidrug-efflux transp 23.4 2.5E+02 0.0087 23.1 7.4 9 160-168 105-113 (278)
425 1hs7_A Syntaxin VAM3; UP-and-D 23.4 1.9E+02 0.0064 21.9 5.9 9 93-101 21-29 (97)
426 2f05_A Paired amphipathic heli 23.2 1.3E+02 0.0046 22.8 5.1 59 114-172 6-77 (105)
427 4dyl_A Tyrosine-protein kinase 23.2 2.1E+02 0.0073 25.8 7.3 40 112-152 352-391 (406)
428 1joc_A EEA1, early endosomal a 23.2 2.6E+02 0.0087 21.5 8.3 28 125-152 9-36 (125)
429 1x8y_A Lamin A/C; structural p 22.9 2.2E+02 0.0075 20.6 9.8 44 129-172 30-73 (86)
430 3e98_A GAF domain of unknown f 22.9 2.3E+02 0.0078 24.3 7.1 25 112-139 67-91 (252)
431 1x4t_A Hypothetical protein LO 22.8 2.5E+02 0.0085 21.2 8.2 61 74-146 18-78 (92)
432 3q4f_C DNA repair protein XRCC 22.8 1.1E+02 0.0039 25.9 4.9 30 120-149 154-183 (186)
433 3m0d_C TNF receptor-associated 22.8 1.9E+02 0.0065 19.9 8.7 27 122-148 8-34 (65)
434 3fx0_A NF-kappa-B essential mo 22.7 49 0.0017 25.4 2.4 9 94-102 19-27 (96)
435 3s84_A Apolipoprotein A-IV; fo 22.4 3.7E+02 0.013 23.3 8.5 79 87-171 17-97 (273)
436 1hwt_C Protein (heme activator 22.4 44 0.0015 23.0 2.0 22 119-140 57-78 (81)
437 1lrz_A FEMA, factor essential 22.3 1.3E+02 0.0045 27.1 5.7 11 117-127 220-230 (426)
438 2j69_A Bacterial dynamin-like 22.1 1.7E+02 0.0057 28.6 6.8 33 141-173 359-391 (695)
439 2czy_A Paired amphipathic heli 22.1 1.4E+02 0.0047 21.2 4.7 33 115-147 4-36 (77)
440 4b4t_L 26S protease subunit RP 22.1 74 0.0025 29.7 4.1 19 150-168 81-99 (437)
441 1j1e_C Troponin I, TNI; THIN f 21.8 3.6E+02 0.012 22.6 9.9 36 140-175 71-106 (180)
442 1s94_A S-syntaxin; three helix 21.8 2.7E+02 0.0094 22.0 7.0 9 163-171 100-108 (180)
443 3fx0_A NF-kappa-B essential mo 21.6 1E+02 0.0034 23.6 4.0 13 89-101 18-30 (96)
444 3vbb_A Seryl-tRNA synthetase, 21.5 84 0.0029 30.4 4.4 27 122-148 43-69 (522)
445 1tu3_F RAB GTPase binding effe 21.5 1.5E+02 0.0053 21.8 4.8 11 158-168 43-53 (79)
446 2l5g_B Putative uncharacterize 21.5 1.8E+02 0.0062 19.1 4.7 11 140-150 8-18 (42)
447 1cii_A Colicin IA; bacteriocin 21.5 3.6E+02 0.012 26.3 8.7 34 110-143 374-407 (602)
448 4aj5_K Spindle and kinetochore 21.4 3.1E+02 0.011 21.8 8.8 45 128-172 51-95 (123)
449 4afl_A P29ING4, inhibitor of g 21.3 1.6E+02 0.0054 21.6 5.1 35 112-146 3-37 (104)
450 1g73_A SMAC/diablo, second mit 21.3 3.5E+02 0.012 22.4 7.9 60 112-171 39-102 (162)
451 1quu_A Human skeletal muscle a 21.2 3.4E+02 0.012 22.1 10.3 31 85-122 94-124 (250)
452 3thf_A Protein shroom; coiled- 21.1 3.8E+02 0.013 22.7 7.9 36 110-145 9-44 (190)
453 3fav_B ESAT-6, 6 kDa early sec 21.1 2.1E+02 0.0072 19.7 6.9 21 153-173 57-77 (94)
454 4i1l_A Scurfin, forkhead box p 20.9 2.8E+02 0.0095 21.0 7.3 59 114-179 23-81 (93)
455 3viq_A SWI5-dependent recombin 20.8 2.3E+02 0.0079 22.1 6.1 25 125-149 5-29 (122)
456 2l7b_A Apolipoprotein E, APO-E 20.6 4.5E+02 0.015 23.3 12.5 85 87-173 76-169 (307)
457 3vlc_E Golgi to ER traffic pro 20.6 49 0.0017 25.3 2.0 18 119-136 29-46 (94)
458 1ykh_B RNA polymerase II holoe 20.5 2.1E+02 0.0072 22.4 5.9 42 123-164 88-129 (132)
459 1xkm_B Distinctin chain B; por 20.4 1.2E+02 0.0041 17.7 3.2 19 112-130 3-21 (26)
460 3sja_C Golgi to ER traffic pro 20.4 2.4E+02 0.0081 20.0 7.1 39 137-175 9-52 (65)
461 1f5n_A Interferon-induced guan 20.3 5.5E+02 0.019 24.8 9.9 9 160-168 572-580 (592)
462 1fmh_B General control protein 20.3 1.6E+02 0.0055 18.0 4.6 25 122-146 3-27 (33)
463 1cxz_B Protein (PKN); protein- 20.3 2.7E+02 0.0093 20.7 7.3 27 150-176 58-84 (86)
464 1no4_A Late, head morphogenesi 20.2 2.8E+02 0.0095 20.8 9.2 48 118-165 24-71 (97)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.76 E-value=1.3e-18 Score=130.97 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=66.1
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
++.+|+.+||+||++||++|.+|+++||.+ ..|+||++||.+||+||++|+.+++.|+.+++.|+..+++.+
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467899999999999999999999999975 379999999999999999999999999999999988876653
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.76 E-value=1.7e-18 Score=129.84 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=64.1
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026646 76 SGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEK 150 (235)
Q Consensus 76 ~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ek 150 (235)
+.+|+.+||+||++||+.|.+|+++||.....|++|++||.+||+||+.|+.+++.|+.+.+.|..++..|+.+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999865589999999999999999999999998777666655555554443
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.73 E-value=4.7e-18 Score=129.82 Aligned_cols=80 Identities=24% Similarity=0.337 Sum_probs=69.3
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGR-PPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~-~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
.+.+|+.+||+||++||++|..|+++||... ..|.+|++||.+||+||++|+.+.+.|..+.+.|+.+...|+.+..+|
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999752 369999999999999999999999999888887777777776666555
Q ss_pred H
Q 026646 154 R 154 (235)
Q Consensus 154 r 154 (235)
+
T Consensus 86 ~ 86 (88)
T 1nkp_A 86 G 86 (88)
T ss_dssp C
T ss_pred h
Confidence 3
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.71 E-value=3.1e-17 Score=123.40 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=67.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026646 76 SGSKACREKLRRDRLNERFLELGSMLEPG-RPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKN 151 (235)
Q Consensus 76 ~~sH~~~ERrRRekINd~F~eLrslLP~~-~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ekn 151 (235)
+.+|+..||+||++||++|..|+++||.. ...|.+|++||.+|++||++|+.+.++|..+++.|+.++.+|+.+.+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999965 33799999999999999999999999999998888888777766554
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.69 E-value=3.1e-17 Score=131.30 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=53.5
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGRP--PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNE 152 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~~--~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknE 152 (235)
.+.+|+..||+||++||++|.+|+++||.+.. .|++|++||.+||+||++|+++++.|+++...+. .
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~-----------~ 95 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQK-----------K 95 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 46789999999999999999999999998742 5899999999999999999999999987643321 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026646 153 LRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk 172 (235)
|+.++..|...+..||.|..
T Consensus 96 l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 96 LEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555443
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.68 E-value=6.1e-17 Score=120.88 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=62.7
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEK 142 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~e 142 (235)
.+.+|+.+||+||++||+.|.+|+++||.....|++|++||..||+||+.|+++++.|+.+++.|+.+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999999999998755799999999999999999999999999998888653
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=113.02 Aligned_cols=58 Identities=33% Similarity=0.421 Sum_probs=52.1
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLK 133 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~ 133 (235)
.+.+|+..||+||++||++|.+|+++||.+ ..|+||++||.+||+||++|+.++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467899999999999999999999999964 3799999999999999999999876543
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=4.4e-16 Score=111.81 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=50.6
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCchhhHHHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGRP----PKTDKATILSDAVQMMEQLRTEAQ 130 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~~----~K~dKasIL~dAIeYIk~Lq~qv~ 130 (235)
.+.+|+..||+||++||+.|.+|+++||.+.. .|++|++||.+||+||++|+++++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999998754 389999999999999999998653
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.52 E-value=1.5e-15 Score=109.52 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=49.1
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCchhhHHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGR-----PPKTDKATILSDAVQMMEQLRTEA 129 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~-----~~K~dKasIL~dAIeYIk~Lq~qv 129 (235)
.+.+|+.+||+||++||++|.+|++|||.+. ..|.+||+||+.||+||++|++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999641 268889999999999999999765
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.48 E-value=1.4e-14 Score=108.27 Aligned_cols=60 Identities=30% Similarity=0.364 Sum_probs=49.6
Q ss_pred cCcCcchHHHHHHHHHHHHHHHHHHhcCCC-CCCCCC-chhhHHHHHHHHHHHHHHHHHHHH
Q 026646 74 CVSGSKACREKLRRDRLNERFLELGSMLEP-GRPPKT-DKATILSDAVQMMEQLRTEAQKLK 133 (235)
Q Consensus 74 ~~~~sH~~~ERrRRekINd~F~eLrslLP~-~~~~K~-dKasIL~dAIeYIk~Lq~qv~~L~ 133 (235)
.++.+|+.+||+||++||++|.+|+.+||. ....|. +|++||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467789999999999999999999999994 333566 799999999999999999998765
No 11
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=9.3e-15 Score=108.46 Aligned_cols=53 Identities=38% Similarity=0.421 Sum_probs=47.9
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCchhhHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGR--PPKTDKATILSDAVQMMEQLRT 127 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~--~~K~dKasIL~dAIeYIk~Lq~ 127 (235)
++.+|+..||+||++||+.|.+|++|||.+. ..|+||++||..||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4667999999999999999999999999652 2699999999999999999974
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.30 E-value=1e-12 Score=96.25 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=50.8
Q ss_pred cCcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 026646 74 CVSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEA 129 (235)
Q Consensus 74 ~~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv 129 (235)
..+..|+.+||+|+..||+.|..|+++||.....|.+|+.||..||+||..|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999654479999999999999999999754
No 13
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.22 E-value=1.1e-10 Score=88.77 Aligned_cols=52 Identities=29% Similarity=0.470 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCCCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 026646 87 RDRLNERFLELGSMLEPGR--PPKTDKATILSDAVQMMEQLRTEAQKLKQSNEN 138 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~--~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~ 138 (235)
|..||++|.+|+.+||++. ..|.+|++||..||+||+.||++++++.++...
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999753 379999999999999999999998888776543
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.19 E-value=1.7e-11 Score=87.58 Aligned_cols=55 Identities=20% Similarity=0.076 Sum_probs=49.0
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGR-PPKTDKATILSDAVQMMEQLRTEA 129 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~-~~K~dKasIL~dAIeYIk~Lq~qv 129 (235)
++..|+.+||+|+..||+.|..|+.+||... ..|.+|+.||..||+||..|++.+
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3556899999999999999999999999642 379999999999999999999765
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.07 E-value=1.2e-10 Score=105.45 Aligned_cols=53 Identities=34% Similarity=0.463 Sum_probs=42.4
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTE 128 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~q 128 (235)
.+.+|+..||+||++||..|.+|++|||. ...|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPG-NARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCS-SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCC-CCCCcCHHHHHHHHHHHHHHHHhh
Confidence 35569999999999999999999999993 347999999999999999998764
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.91 E-value=6.1e-10 Score=102.09 Aligned_cols=54 Identities=37% Similarity=0.401 Sum_probs=47.7
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCchhhHHHHHHHHHHHHHHH
Q 026646 75 VSGSKACREKLRRDRLNERFLELGSMLEPG--RPPKTDKATILSDAVQMMEQLRTE 128 (235)
Q Consensus 75 ~~~sH~~~ERrRRekINd~F~eLrslLP~~--~~~K~dKasIL~dAIeYIk~Lq~q 128 (235)
.+.+|+..||+||++||+.|.+|+++||.+ ...|+||++||..||+||+.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 366799999999999999999999999942 127999999999999999999854
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.72 E-value=3e-09 Score=78.17 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCchhhHHHHHHHHHHHHHH
Q 026646 79 KACREKLRRDRLNERFLELGSMLEPGR-PPKTDKATILSDAVQMMEQLRT 127 (235)
Q Consensus 79 H~~~ERrRRekINd~F~eLrslLP~~~-~~K~dKasIL~dAIeYIk~Lq~ 127 (235)
-+.+||+|+..||+.|..|+.+||... ..|.+|+.||..||+||..||.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 347999999999999999999999642 2699999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.97 E-value=1.6e-05 Score=61.87 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHH
Q 026646 81 CREKLRRDRLNERFLELGSMLEPGR-PPKTDKATILSDAVQMMEQLRTEAQKL 132 (235)
Q Consensus 81 ~~ERrRRekINd~F~eLrslLP~~~-~~K~dKasIL~dAIeYIk~Lq~qv~~L 132 (235)
..||.|=..||+.|..|+.+||... ..|.+|..||.-||+||..|+..++.-
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457788899999999999999642 279999999999999999999877653
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.54 E-value=0.00069 Score=51.16 Aligned_cols=59 Identities=22% Similarity=0.480 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..||+-|.-||-++++|+.+|..|.++.++++.....|+.|+..|+.|....+..|.+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999998888888888999898888877777665
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.58 E-value=0.014 Score=43.94 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQR-------LKADKEKLEQQVKAM 174 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~-------Lk~e~e~le~qlk~~ 174 (235)
.+.+.+|..+|+.+-..+.-|+.+|++||.+.+.|.+++.. |..++++|+++..++
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46788899999988888888888888888877777777776 666777777776654
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=96.45 E-value=0.022 Score=40.25 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 83 EKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 83 ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
||++|-+..++..+.++ + ..-.+|+..|+.++..|+.+|..|..+|..|+.++..|+
T Consensus 1 Ekr~rrrerNR~AA~rc-----R----------~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----R----------NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554 1 344578888888888888888888877766666555554
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.08 E-value=0.057 Score=43.84 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhc--CCCCCCCCCchhhHHHH---HHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHH
Q 026646 88 DRLNERFLELGSM--LEPGRPPKTDKATILSD---AVQMMEQLRTEAQKLKQSNENL--------------QEKIKELKA 148 (235)
Q Consensus 88 ekINd~F~eLrsl--LP~~~~~K~dKasIL~d---AIeYIk~Lq~qv~~L~~e~~~L--------------~~ei~eLk~ 148 (235)
..+|+++.++++. -|.. -.++++||.- |=+|++ ++.+.+.|+.+.+.+ +.+++.++.
T Consensus 35 ~~vd~km~ei~~~~~~~~l---~~~r~aVLaALNiadEl~k-~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 35 SYINNKITEFNKEESYRRM---SAELRTDMMYLNIADDYFK-AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHTTCHHHHTS---CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999976 5533 4688888653 333333 344444444433333 333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 149 EKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~le~qlk 172 (235)
++.+|++++..|..++-+||..++
T Consensus 111 e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 23
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=96.02 E-value=0.0091 Score=43.70 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQR 159 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~ 159 (235)
--.||++|..++..|+..+..|..++..|+.++..|+.|+..
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888877776665555555555555544443
No 24
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=95.44 E-value=0.055 Score=42.28 Aligned_cols=57 Identities=23% Similarity=0.439 Sum_probs=35.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 108 KTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEK-------IKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 108 K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~e-------i~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
.++|..++.+ ||. |...+..|++++..|+.. |.+|..|...|+.||+.|+.|.+-..
T Consensus 29 ~mSKqELIqE---Yl~-LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 29 NMSKQELIKE---YLE-LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp TSCHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3688888775 444 777777787777777764 45555555555555555555544433
No 25
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=95.42 E-value=0.023 Score=39.35 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=15.1
Q ss_pred HHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRT-------EAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 117 dAIeYIk~Lq~-------qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
+|++||++--. .++.|+.+++.|+.++..|+.+..||+
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899987533 455666666666555555555554444
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.16 Score=42.22 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 86 RRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 86 RRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
=|+.|-.+|.+|-.-+-.+. + ..=+|=+.+-..-|..|+.+...|+.++..|.+++++-......|+||...|..+..
T Consensus 36 ~Rd~~E~~~~~l~~e~~~~~-~-~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 36 DRNDKEAHLNELFQDNSGAI-G-GNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHhhccCC-C-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666665542221 1 112233344455666666666666666666666666665666678888888888887
Q ss_pred HHHHHHHhc
Q 026646 166 KLEQQVKAM 174 (235)
Q Consensus 166 ~le~qlk~~ 174 (235)
-++..++.+
T Consensus 114 ~lE~kl~kL 122 (152)
T 3a7p_A 114 VLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777653
No 27
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=95.04 E-value=0.054 Score=37.83 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
-.|+.+|+.++..|+.+|..|..+|..|+.|...|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666555555444443333
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.02 E-value=0.11 Score=40.43 Aligned_cols=56 Identities=27% Similarity=0.475 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEK----------------------------NELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ek----------------------------nELr~E~~~Lk~e~e~le~ql 171 (235)
+-+..|+.+++.|+.++..|.++++.|..++ ...+.+...|.+|+++|...|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777766666544 234456667777777777777
Q ss_pred Hhcc
Q 026646 172 KAMS 175 (235)
Q Consensus 172 k~~~ 175 (235)
+.|.
T Consensus 92 ~~lE 95 (100)
T 1go4_E 92 RAME 95 (100)
T ss_dssp TTCC
T ss_pred HHHh
Confidence 7664
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.95 E-value=0.18 Score=40.84 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
-.-|..|+.++..++..++.+..++.+|+.++++|+.++..|.++.+.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666777777778888888888888888888888776653
No 30
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.69 E-value=0.1 Score=38.52 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
|.+||..+++..+++....+.|++|..+..+..++...|+.++++++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899988888888888888899999999999999999999888874
No 31
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.47 E-value=0.1 Score=34.75 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
.|+.+|..++..|+..+.+|.+++.-|..|..-||
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 49999999999999999999998888877766666
No 32
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.47 E-value=0.27 Score=37.31 Aligned_cols=54 Identities=20% Similarity=0.471 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQ------------EKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~------------~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
|+-|+.|.++...|+.+...++ .+|.+|+..+..+..|+.+|..+++.|+..+.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776655443 33556666666666666666666666666554
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=94.30 E-value=0.061 Score=37.75 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
.+|+.+|+.++..|+.+|..|..++..|..|...|
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665555554444433
No 34
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=93.63 E-value=0.17 Score=35.84 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQE 141 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ 141 (235)
.|+.+++.|+.+|..|..
T Consensus 27 ~le~~~~~L~~~N~~L~~ 44 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKE 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 35
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.56 E-value=0.58 Score=34.65 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+|...-+.-...-+.+.+.-.....++.....+|..||..|+.+++.|+.++..+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333334444444444555555566666666666666666666666554
No 36
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=93.25 E-value=0.64 Score=34.92 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+=|.-|++|+-+|.+|+.+.-+-.-+++.-+.|...|+.....-.+++++|+.+|-+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 567778999999999999988888888888888888998888888999999998864
No 37
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=93.07 E-value=1.1 Score=35.38 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=40.3
Q ss_pred HhcCCCCCCCCCchhhH------HHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHH-------HHHHHH
Q 026646 98 GSMLEPGRPPKTDKATI------LSDAVQMMEQLRTEAQKLKQSNENLQE---KIKELKAEKNELRD-------EKQRLK 161 (235)
Q Consensus 98 rslLP~~~~~K~dKasI------L~dAIeYIk~Lq~qv~~L~~e~~~L~~---ei~eLk~EknELr~-------E~~~Lk 161 (235)
+.+||-+ .++++.-| |..|=+-+..-+.++.+|+.+..++.. .|.-|++...-.++ .-.++.
T Consensus 12 ~~~~~~~--~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~ 89 (110)
T 2v4h_A 12 SGLVPRG--SHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLV 89 (110)
T ss_dssp -CCCCTT--CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcch--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH
Confidence 4567755 67777755 455555566666666666666655554 45555554433222 222455
Q ss_pred HHHHHHHHHHHh
Q 026646 162 ADKEKLEQQVKA 173 (235)
Q Consensus 162 ~e~e~le~qlk~ 173 (235)
.+|+.|+.||..
T Consensus 90 ~eKe~L~~ql~~ 101 (110)
T 2v4h_A 90 EKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 555555555544
No 38
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=93.06 E-value=0.33 Score=33.70 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
.+|-+||+.|+.||..|+.+++.=....+.|..|...+|.=...|+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 4678899999999999998888877778888888777766555554
No 39
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=92.98 E-value=0.42 Score=35.14 Aligned_cols=50 Identities=12% Similarity=0.294 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+.+.++.+.++.+|..|+.++..|+...++-+.+-..++.|+.++-++|.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888888888888888888888777777777777766654
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.66 E-value=0.62 Score=36.78 Aligned_cols=51 Identities=31% Similarity=0.421 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAE----KNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~E----knELr~E~~~Lk~e~e~le~qlk 172 (235)
++.|+..+.+|..+++.++.+.+..+.+ .+.|++|...|+...+.+...|.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665554444332 33444444444444444444433
No 41
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.54 E-value=0.48 Score=32.91 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
....|+.++..|+.+..+|+.+...|+.|+..|.++|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666666666655
No 42
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=92.52 E-value=0.11 Score=35.99 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
.||.+|..+|..|+.+|..|..++..|+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665555543
No 43
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=92.33 E-value=0.95 Score=34.17 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 145 ELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 145 eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
++..+..+|..||..|+.+++.|+.++.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 44
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=92.21 E-value=1.1 Score=34.11 Aligned_cols=40 Identities=15% Similarity=0.362 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+...|+.+...|..++..|+.|+..+..|++.+.+.+.++
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666677777777777777777777777777665
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.17 E-value=0.94 Score=31.89 Aligned_cols=45 Identities=29% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
|.+|=..=+.+.+.|+.+.+.|..+..+|+.+.+.|+.|+..|+.
T Consensus 14 A~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 14 ATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555544443
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.09 E-value=0.5 Score=44.34 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHH
Q 026646 113 TILSDAVQMMEQ 124 (235)
Q Consensus 113 sIL~dAIeYIk~ 124 (235)
..|.+.+..+++
T Consensus 505 ~~l~~~~~~~~~ 516 (597)
T 3oja_B 505 DNLNKVFTHLKE 516 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 445555544443
No 47
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=92.00 E-value=0.5 Score=31.98 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
.|+..+.+|++.|-+|+..-+.|..-+..||+|..+|..|.-
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888776666677667778877777766653
No 48
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.75 E-value=0.88 Score=34.64 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
..|+.+++.|+.+-..|..++..|..+...+..+...+..+.++|.+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555555555555555555555555555544
No 49
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=91.68 E-value=1.8 Score=29.37 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..|+..+..++.....+..++..++...+.+..+......+|.+++.|++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666655555566666666666666666666666777777666654
No 50
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.50 E-value=0.25 Score=35.07 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 141 EKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 141 ~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
..+.+|..+..+|..+|..|+++++.|.++|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555544
No 51
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.36 E-value=1.3 Score=37.79 Aligned_cols=55 Identities=33% Similarity=0.399 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAE----KNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E----knELr~E~~~Lk~e~e~le~qlk 172 (235)
+=.-++.|+.++..|..+++.++.+.+....+ .+.|++|.+.|+..++.+...|.
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666555555444444 55555566666555555555544
No 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=90.97 E-value=0.99 Score=31.63 Aligned_cols=37 Identities=35% Similarity=0.466 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 136 NENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 136 ~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
...|+.++..|+.+..+|+.+...|..++..|...|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666665554
No 53
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=90.53 E-value=0.84 Score=34.04 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+.++++.++.+|..|+.+++.|+...++-+.+-..++.|+.++-++|.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777777777777777777777777777666654
No 54
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.40 E-value=0.29 Score=43.63 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 155 DEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 155 ~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
++...++.|+++|+.||+.+.+||.
T Consensus 75 ~~Lk~ar~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 75 ETLKEARQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3334445566666666666677774
No 55
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.21 E-value=2 Score=36.20 Aligned_cols=52 Identities=19% Similarity=0.407 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
.+-+.|.+|+.++..|..+++.+......+..++..|.+....|..++..++
T Consensus 87 q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666666666666666666666666666666666666666655555555
No 56
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=90.21 E-value=1 Score=33.32 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+.|...|.+|+...+.|+.+...|-+|.. .-..+||..+.+||.+++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc
Confidence 35778888899988889888888866554 44478999999999999973
No 57
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.03 E-value=0.54 Score=35.55 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
+++.++..|+.+|..|+.+|..|+.|
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444333
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.01 E-value=1.5 Score=42.89 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMME-QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 114 IL~dAIeYIk-~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
=+..++.-|. +|+++++.|+.++......|+.|+.-+.+++.+.++|..+|.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 888888888887766567788888888888888888877764
No 59
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=89.94 E-value=1.4 Score=30.31 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
-+.+|+.++..|...|++|.+.. .+.|++...|+.++++|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L-------~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETL-------KEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 34456666666666666655444 44555556666666655
No 60
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=89.87 E-value=0.41 Score=42.68 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 131 KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
+|+.++..|..+.++|+.+.+++++|...||.|+++|.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444555566666777777777777764
No 61
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=89.80 E-value=1.4 Score=29.80 Aligned_cols=45 Identities=31% Similarity=0.414 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+|...|++|+...+.|+.+...|-+|.. .--.+||..+.+||.++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC
Confidence 4677888888888888888877765544 44478999999998764
No 62
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=89.72 E-value=0.64 Score=32.39 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+.+|..+..+|..+|..|+.++..|+.++.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 63
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=89.64 E-value=1.2 Score=30.64 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 137 ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
..|+.++..|......|-+-....+.+|.+|..+|..++
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555655555677777777777777777777654
No 64
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.45 E-value=1.6 Score=34.69 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=32.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 108 KTDKATILSDAVQMMEQLRTEAQKLKQSN----ENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 108 K~dKasIL~dAIeYIk~Lq~qv~~L~~e~----~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+.+|-.++..=-.-|..|+.+++.++.+. .+|+..|..|..+..+-+.+++....|.+.|..++..+
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333333333333444444433322 24444455555555555555555566666666666654
No 65
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.95 E-value=0.46 Score=44.63 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=31.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
...+|+.+++.|..+.+.+++|...++.+..+++.+++.+..+|.
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~ 94 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPL 94 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 334455555566666667777777888888888888888877664
No 66
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=88.82 E-value=4.8 Score=31.87 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 111 KATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 111 KasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
--.|..++=.||.+|+.++..|+.+++.-+.. +.+...|+..|+.+++.+
T Consensus 31 le~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 31 LENMKTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999888765544 344445555555555544
No 67
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.80 E-value=1.1 Score=32.48 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
....|+.++.+|..+...|..|+..|+.+++.|..+++.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666677777777777777777654
No 68
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.75 E-value=2.5 Score=31.94 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 136 NENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 136 ~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
...|+.+|..+..++..|.-|...|..+++++.
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 69
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=88.69 E-value=2.5 Score=36.40 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
+.=+++-+..|++++..|..+++.|+.+++.|..+..++-.
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666555555554444433
No 70
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.59 E-value=2.1 Score=28.58 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEK 142 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~e 142 (235)
..+.+|..++..|+.+|+.|..+
T Consensus 3 nlvaqlenevaslenenetlkkk 25 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHh
Confidence 35678888899998888887654
No 71
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=88.33 E-value=1.2 Score=41.36 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|..|+.+++.|+++..+|+++|+.++.+..++.+..........+|..+|..+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677777777777777777777777777777766665555556666666554
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.25 E-value=3.6 Score=38.45 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q 026646 159 RLKADKEKLEQQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~le~qlk~ 173 (235)
.++.|...+.++++.
T Consensus 562 ~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 562 ELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333433
No 73
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=87.79 E-value=1.5 Score=33.97 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 026646 141 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSGFLPH 183 (235)
Q Consensus 141 ~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~~~p~ 183 (235)
+++..|+.++.+|+.|+.+|+.+|+.|+-+|......-.|-|.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~ 54 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQS 54 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 4667788888888888888889999999999887665556553
No 74
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=87.79 E-value=1.5 Score=32.35 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
..+++.++..|+.+|..|+.+|..|+.|...|+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777766665555444
No 75
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=87.76 E-value=3.3 Score=28.05 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
..-+++..+..++..++.+...+...+..+..+.+..+++...++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777888888888888888899999999999999999888865
No 76
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=87.64 E-value=1 Score=32.71 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
|+.|..+..+|..|+..|+.+++.|+++|.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777777888888888888888888764
No 77
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.57 E-value=3.6 Score=34.13 Aligned_cols=79 Identities=20% Similarity=0.242 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLEP---GRPPKTDKATILSDAVQMMEQLRTEAQKLK-------QSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 89 kINd~F~eLrslLP~---~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~-------~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
+++..|.++..+.++ +. .++... .|..--.-+..|+.++..|+ +.++.|+.++..|..+.|.+.+...
T Consensus 43 ~~~~l~~e~~~~~~~~~vs~-~~~~~~-~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 43 HLNELFQDNSGAIGGNIVSH-DDALLN-TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLS 120 (152)
T ss_dssp --------------CHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCcccccc-hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666654 00 112222 33333344455555555555 4456777777778888888887777
Q ss_pred HHHHHHHHHHH
Q 026646 159 RLKADKEKLEQ 169 (235)
Q Consensus 159 ~Lk~e~e~le~ 169 (235)
.|+.|...|-+
T Consensus 121 kLq~EN~~LV~ 131 (152)
T 3a7p_A 121 DLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777655433
No 78
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.56 E-value=5.2 Score=31.45 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
..+.+|-+....|..+-..|+.....+.+.+.+.....++|..++-.|..++..|+.+|.
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555555555555555544444444444444445455555544444
No 79
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.96 E-value=5.9 Score=30.54 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQ 140 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~ 140 (235)
+-|.+|+.++...+.+...|+
T Consensus 12 e~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 333444444433333333333
No 80
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.91 E-value=0.96 Score=28.64 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026646 139 LQEKIKELKAEKNELRDEKQRL 160 (235)
Q Consensus 139 L~~ei~eLk~EknELr~E~~~L 160 (235)
|++++++|-.++.+|++|..+|
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444433333333333333
No 81
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.68 E-value=7.3 Score=28.23 Aligned_cols=58 Identities=12% Similarity=0.280 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..|.+-+.+++.++...+....++.+++..|+..+..|.++...+.......+..|..
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666777777777777777777777666666665555555543
No 82
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.61 E-value=6.2 Score=29.74 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
..|++-..+++.++..++..+.++.+++..|+..+..|.++...+.........
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777766666666655544444443333
No 83
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.57 E-value=3.1 Score=29.32 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
-.+|+.+|+.++..|+.+|..|..++..|+.+
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888877777777776666544
No 84
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=86.49 E-value=3.7 Score=30.58 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 139 LQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 139 L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
|+.+|..|+.|+.+||-.+..+.-+++.+.+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 85
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.28 E-value=2.3 Score=31.25 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|..++.+|+....-+...|++|....-+-..+...|..++..|..+|+.+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444454444443
No 86
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=86.22 E-value=1.1 Score=28.53 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
+|..++++|-.++.+|++|..+|+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444555555555555555555444
No 87
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.19 E-value=2.5 Score=44.05 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 026646 153 LRDEKQRLKADKEKLE 168 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le 168 (235)
|++|++.|+++++.|+
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 88
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.15 E-value=7.2 Score=29.57 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
..|++-..+++.++..++..+.++.++|..|...+..|.++...+.
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666666666655555555444333
No 89
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=86.09 E-value=2.7 Score=30.00 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 126 RTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 126 q~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
..++++|-+-|..|.++++-|..+.+.|+.|+..|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 446777777888888888888888888888888775
No 90
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.04 E-value=2.9 Score=43.58 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 026646 153 LRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|++....|+.++.+|++|+..+
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446666666677766554
No 91
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=85.90 E-value=1.9 Score=27.76 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKAD 163 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e 163 (235)
+|..++++|-.++.+|.+|..+|+..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444545555555555544443
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.76 E-value=15 Score=33.64 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 141 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 141 ~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
...+....+.+.|++|+++++.+++.+..++..
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 334444555556666666666666666665554
No 93
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=85.70 E-value=5.3 Score=29.71 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.++.|+.+|..|+-...++.-+...++..-..+.+.|..
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443
No 94
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=85.70 E-value=3.3 Score=28.68 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+++++..+..|+.+..+++.++.....|+.+|-+=|..|..||.--..-|.
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 356788888888888889888888888999999999999988877665554
No 95
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.70 E-value=6.9 Score=30.70 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 126 RTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 126 q~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
......|......|..+++++.....+..+.+..|.+++.++++++.
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~ 114 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECS 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555555555555555555555544
No 96
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=85.67 E-value=5.2 Score=34.37 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
+-+..|+.++++|+.+..+|..+++++..+|+++..+.
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666677766667667666666666665543
No 97
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.49 E-value=5.3 Score=31.16 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKI 143 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei 143 (235)
||..||.++..+..++..|.-++
T Consensus 21 ~I~~LR~qid~~~~e~a~l~lel 43 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVER 43 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444444333
No 98
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.30 E-value=1.3 Score=28.00 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
+|+.++++|-.++.+|++|..+||
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555555555555555555554
No 99
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=85.24 E-value=5.2 Score=31.21 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.-|+...+.+++...+++.+.++...+.+.++-....|+.++..++.+|+.
T Consensus 33 dlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 33 DTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555666666666666665
No 100
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=85.19 E-value=1.6 Score=29.93 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 146 LKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~le~q 170 (235)
|+.|..+|+.+...|+.+++.+..+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 101
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.01 E-value=4.3 Score=35.04 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 142 KIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 142 ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
++.+++.++..+..+...++..+++.+.++
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 102
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=84.95 E-value=2.9 Score=28.51 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 126 RTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 126 q~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
++++.+|++.|.+|-++|.+| ......+..||+||..-|+.-
T Consensus 3 eq~l~kLKe~n~~L~~kv~~L-------e~~c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHL-------EFSCSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHccHHHHHHHHHHHHHHHc
Confidence 456778888888876666555 444555668888888887753
No 103
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.81 E-value=4 Score=31.47 Aligned_cols=49 Identities=16% Similarity=0.390 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
|+.++.+|+.++.....++..|..+..+-+.-......++.+++++|..
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433333333223333334444444443
No 104
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=84.38 E-value=1.5 Score=27.70 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
+|+.++++|..++.+|.+|..+|+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555555555555555554443
No 105
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=84.35 E-value=2 Score=32.65 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 130 QKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
..|+.++..|+.+++.|+.|..++..|...+|...+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555544443
No 106
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=84.18 E-value=7.8 Score=36.44 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=41.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
.+......++++++++..++.+|+.......++|+.|+...+.++...+.|+..+..|+.
T Consensus 74 ~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 74 TLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344445666999999999999998877777777877777766665555555555544433
No 107
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=84.10 E-value=1.5 Score=28.17 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 139 LQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 139 L~~ei~eLk~EknELr~E~~~Lk 161 (235)
|..++++|..++.+|.+|..+|+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444444444443
No 108
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=83.99 E-value=3.6 Score=38.43 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
..|+.++.+|++++++|+++++.++.+..++.++......+..+|..+|..+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888888888888888777766666667777777765
No 109
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=83.98 E-value=1.6 Score=27.74 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
+|..++++|-.++.+|++|..+||
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344455555555555555555554
No 110
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=83.96 E-value=6 Score=27.18 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=21.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 129 AQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 129 v~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+++|......|..++..|+.+.+.|+.+...-|.|-.|-.+-|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444455555555555555555555555554444
No 111
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=83.93 E-value=0.99 Score=26.90 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
|+-+|+.++-+|+-+...|..++++|
T Consensus 1 yvyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHHhcc
Confidence 34555555555555555554444443
No 112
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=83.87 E-value=8.8 Score=30.57 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 146 LKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~le 168 (235)
+..+...++.+...+..++.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~ 271 (284)
T 1c1g_A 249 LEKSIDDLEDELYAQKLKYKAIS 271 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 113
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=83.59 E-value=4.2 Score=27.87 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+.-+.+|..+...|..||..|+.++..|++++
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777888888888888888887654
No 114
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=83.58 E-value=10 Score=28.06 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
..|++.-++|..-..+|..-|..|..|.++|......|+...+.|+
T Consensus 28 ~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 28 NALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666666666666666666666655555443
No 115
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.10 E-value=3.8 Score=30.09 Aligned_cols=44 Identities=9% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 131 KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.|+.....|+.++.....-+.+|.+.......+|++|+.+|+.+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555554
No 116
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=83.06 E-value=3 Score=33.31 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSN----ENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~----~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
|++|+++.+..+.++...+ ..+.+.++.|..+..+|+.|...|+.++-
T Consensus 5 A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 5 AIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp GTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444322 34445555555555555555554444433
No 117
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.85 E-value=1 Score=44.00 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCchh--hHHHHHHHHHHHHHHHHHHHHH---Hh-HHHHHHHHHHHHHHHH-------HHHH
Q 026646 90 LNERFLELGSMLEPGRPPKTDKA--TILSDAVQMMEQLRTEAQKLKQ---SN-ENLQEKIKELKAEKNE-------LRDE 156 (235)
Q Consensus 90 INd~F~eLrslLP~~~~~K~dKa--sIL~dAIeYIk~Lq~qv~~L~~---e~-~~L~~ei~eLk~EknE-------Lr~E 156 (235)
+..++.+|+..|... .|..|- +......+||++=+.+...++. ++ +.|+..|.+|+.+++. ||.-
T Consensus 62 ltkrINELKnqLEdl--sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 62 FTNRINKLKNSLFEY--QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677666543 222221 1233344444332333322222 22 2555666666665553 3333
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 157 KQRLKADKEKLEQQV 171 (235)
Q Consensus 157 ~~~Lk~e~e~le~ql 171 (235)
+..+..+|.|||..|
T Consensus 140 Ledq~~kIQRLEvDI 154 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444554443
No 118
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=82.82 E-value=3.5 Score=30.22 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 148 AEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 148 ~EknELr~E~~~Lk~e~e~le~ql 171 (235)
..+.+|..+......+|..|+.+|
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444
No 119
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=82.63 E-value=5.6 Score=27.35 Aligned_cols=44 Identities=11% Similarity=0.272 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
|.+|-.+|+.|.....+|..++..|+.+...-.+|-.+-...++
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56788888888888888888888888887777777666655544
No 120
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=82.60 E-value=7.1 Score=29.41 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
.|.++|..-+.++.+|.++..+.+..|..|.
T Consensus 48 kl~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 48 HKENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444444443
No 121
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=82.58 E-value=12 Score=27.94 Aligned_cols=40 Identities=20% Similarity=0.463 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.++.+.+..|..++.++++... .|..|..++++++.+++.
T Consensus 31 EELs~vr~~ni~~eskL~eae~-------rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEA-------RNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433 444555555555555554
No 122
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.55 E-value=6.3 Score=29.25 Aligned_cols=31 Identities=10% Similarity=0.272 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..|+....++-=-+..|.++++.|..+|.-
T Consensus 51 ~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 51 LQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433445566666666666543
No 123
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=82.36 E-value=8.1 Score=28.42 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.|+.||.+...-+.+...|++.++--.+....|-||.-.|.-|..-|++.|..+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 566777777777777778777766555566678888888888888888877544
No 124
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=82.21 E-value=8.1 Score=28.22 Aligned_cols=48 Identities=27% Similarity=0.399 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
|+..+..|..+++.|..+++.+..+...+++|-....+.+.+++.+|+
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~ 49 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLL 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655555555555544444344444444443
No 125
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.14 E-value=3.7 Score=38.62 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhcCC
Q 026646 89 RLNERFLELGSMLE 102 (235)
Q Consensus 89 kINd~F~eLrslLP 102 (235)
.+..+|.+|+..|-
T Consensus 64 ~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 64 DFTSRINKLRDSLF 77 (390)
T ss_pred hHHHHHHHHHHHHH
Confidence 34455555665554
No 126
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.08 E-value=7.3 Score=33.54 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKA---------EKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~---------EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-+..++.++.+++.+...++..++..+. |++.|..|...++.++..++.++..
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433 2334445556666666666666555
No 127
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=82.03 E-value=9.3 Score=28.18 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+.+++..+..|+.+..+++.++.....|+.+|-+=|..|..||.--..-|
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44556667777777777777777777788888888888888776554444
No 128
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=81.57 E-value=4.2 Score=26.16 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
+++|...|++|..++..|+.++..|+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666666666666666666655543
No 129
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=81.56 E-value=2.3 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 139 LQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 139 L~~ei~eLk~EknELr~E~~~Lk 161 (235)
|+.++++|-.++.+|.+|..+||
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444444444444554444443
No 130
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=81.33 E-value=2.3 Score=27.03 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
+|..++++|-.++.+|.+|..+||
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHH
Confidence 445555555555555555555554
No 131
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=81.03 E-value=9 Score=29.84 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
.|.-+|+-|+...+.+.+...+++.+..|...+...+|..+..|+.++..+.
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555888888888888888899999988888889999999999999987753
No 132
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=80.64 E-value=1.9 Score=27.27 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 146 LKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~le~ 169 (235)
|.....+|..+|+.|.+|++||..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444444444444443
No 133
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=80.50 E-value=6.9 Score=26.63 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhHHH
Q 026646 123 EQLRTEAQKLKQSNENL 139 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L 139 (235)
.+|++-...|-.....|
T Consensus 7 ~kLKe~n~~L~~kv~~L 23 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHL 23 (48)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 134
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.47 E-value=15 Score=28.75 Aligned_cols=39 Identities=15% Similarity=0.375 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
.++..-+..||.++..|...++.|+..|++|.+...+|.
T Consensus 31 ~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 31 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 344455666666666666666666666666666655553
No 135
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.23 E-value=16 Score=29.10 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+++|+-|+..|..+.....+++|+|..+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 444444444444444444444444444433
No 136
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=80.23 E-value=4.2 Score=37.18 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
=++.|+.++.+|+.......++|+.|+.....++...+.|+.++..|+..+.
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666665555666666666666666555666555555555443
No 137
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=80.21 E-value=3.4 Score=26.58 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEK 150 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~Ek 150 (235)
+++|..+|++|..++..|+.++..|+...
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45666667766666666666666655433
No 138
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=80.07 E-value=3.8 Score=25.39 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 144 KELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 144 ~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
..|++|+.-|..|...||-||--|.
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 139
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=80.00 E-value=13 Score=27.54 Aligned_cols=32 Identities=38% Similarity=0.519 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 142 KIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 142 ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
++.+|+.|+.-|+.|...+..-+.+++..++.
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555443
No 140
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=79.98 E-value=11 Score=28.05 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=21.4
Q ss_pred HHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 127 TEAQKLKQSNENLQEK-------IKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~e-------i~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
.+++.|-.+|.+|.+. -++|.+...||-.|+..|+.|++.+++
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444444333 344445555555555555555555544
No 141
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.88 E-value=9.9 Score=34.87 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
..++++.+..++++..+..+++++.|+.|++.++.+...+..+++...+.++.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 34444444555556666777788888888888888888888888887777765
No 142
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=79.83 E-value=11 Score=27.58 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+++++..+..|+.+..+++.++.....|+.+|-+=|..|..||.--..-|
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555566666666666666666666677777777777777765544433
No 143
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.82 E-value=6.1 Score=45.87 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
++..++++++.|+.+.+++..|++.|+.+.+.++..|.
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555554444
No 144
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=79.73 E-value=0.71 Score=40.40 Aligned_cols=38 Identities=24% Similarity=0.449 Sum_probs=18.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
|.++|++|++++.+|+.+..++ ..|+.|.++|+..|..
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~----~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEV----ADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 4445555555555554433322 3455666666666654
No 145
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=79.65 E-value=2.9 Score=26.60 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
+|..++++|-.++.+|.+|..+|+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444445455555554444443
No 146
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=79.21 E-value=9.8 Score=35.36 Aligned_cols=77 Identities=16% Similarity=0.274 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 88 DRLNERFLELGSMLE-PGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 88 ekINd~F~eLrslLP-~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
..|++-|..|.++-- |. .-.-+..+|+.|-....+++.--..|+.....+..+|+..-.+.|.|-++...|..+|.+
T Consensus 44 ~~l~~ff~alq~la~~P~--~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~ 121 (463)
T 2d4y_A 44 GSLQSFFTSLQTLVSNAE--DPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISR 121 (463)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888887763 22 456788899999888888887777777766666666666666666666666666655544
No 147
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.06 E-value=9.9 Score=31.42 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNE 137 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~ 137 (235)
|-.||++...|......+..+++
T Consensus 8 LI~Ain~qs~LeD~L~~~R~el~ 30 (154)
T 2ocy_A 8 LIESVDKQSHLEEQLNKSLKTIA 30 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 44556666665555555544444
No 148
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.03 E-value=13 Score=31.72 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
+..-|..|+.++..|...+..|...|.+|......|
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333445555555555555555555555554444444
No 149
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=78.57 E-value=8.7 Score=27.20 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026646 154 RDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 154 r~E~~~Lk~e~e~le~qlk~ 173 (235)
+.|...|+..+..|+.+|.+
T Consensus 55 k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555443
No 150
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=78.20 E-value=11 Score=27.37 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
...++..+..|+.+..+++.++.....|+.+|-+=|..|..||.--...|.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777788888888888877778888888888888888877666655
No 151
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.14 E-value=9.1 Score=36.73 Aligned_cols=52 Identities=27% Similarity=0.427 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELK------------------AEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk------------------~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-++|+.+++.|+.+...+..+|..++ .+..+|+++...|+.+...++.+|..
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665555555555443 33344444444455555555555554
No 152
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=78.12 E-value=18 Score=30.22 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026646 141 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 178 (235)
Q Consensus 141 ~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p 178 (235)
.+|+.|..|+.+||.+.. .+..+.+.++..-++|+
T Consensus 113 akI~aL~~Ei~~Lr~qL~---~~R~k~~~em~KeGip~ 147 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLD---EQRVKRDVAMAQAGIPR 147 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCC
Confidence 457777777777775443 33444566664445554
No 153
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.11 E-value=2.2 Score=31.72 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
+.+.|+++|.+|....++|..||..||.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666554
No 154
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=77.42 E-value=4.8 Score=28.30 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
-.+++.+|++.|.+|-.++++| ...++....||+||...|+..+
T Consensus 9 se~q~~kLKq~n~~L~~kv~~L-------e~~c~e~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHL-------EFSCSEKEQEIERLNKLLRQHG 52 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 3456778888888877766555 4455666788888888888654
No 155
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.13 E-value=13 Score=28.96 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKE 145 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~e 145 (235)
+-|..|+.+++.|+..+..|+..+.+
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444555555555555555444433
No 156
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=77.13 E-value=1.7 Score=37.96 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
+.+..+..|+++.++|++++.+|+.+.. +..+|+.||.+|+..++
T Consensus 16 ~~~~~~~~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 16 DGVVDLKNTYTENQHLKERLEELAQLES----EVADLKKENKDLKESLD 60 (255)
T ss_dssp ----------CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 4455556677888889998888876553 44677777777766544
No 157
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=77.08 E-value=6.9 Score=27.06 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
.+++|-.+++.|+.|...||.|...--..+.+||.+
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 356777778888888888888777666666666654
No 158
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=76.96 E-value=32 Score=28.81 Aligned_cols=88 Identities=20% Similarity=0.399 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHH-HH
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQK-------LKQSNENLQEKIKELKAEKNELRDE-KQ 158 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~-------L~~e~~~L~~ei~eLk~EknELr~E-~~ 158 (235)
|+.|-.-+..|.+.|...+....--..++.+.-..|..|+.++++ +..++.+|++++..|..+++.+.=+ +-
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~ 143 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNY 143 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444455555555432111111122233333344455555444 4455666666666666666655522 23
Q ss_pred HHHHHHHHHHHHHHhc
Q 026646 159 RLKADKEKLEQQVKAM 174 (235)
Q Consensus 159 ~Lk~e~e~le~qlk~~ 174 (235)
.||+--.++++++++.
T Consensus 144 eLKalQ~~~eqE~~~H 159 (168)
T 3o0z_A 144 KLKSLQQRLEQEVNEH 159 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666677788887764
No 159
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=76.93 E-value=15 Score=33.46 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHH-------HHHHHHh-HHHHHHHHHHHHHHHHH
Q 026646 82 REKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEA-------QKLKQSN-ENLQEKIKELKAEKNEL 153 (235)
Q Consensus 82 ~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv-------~~L~~e~-~~L~~ei~eLk~EknEL 153 (235)
.-|++++.|+..+..|.+..| +-..|-.-+.+|+.+. +.+...- ..|..+ ++++.++.++
T Consensus 21 ~lr~~~eql~~~i~~L~~~ap-----------~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~ 88 (302)
T 3ibp_A 21 ALRQEQEQLQSRIQSLMQRAP-----------VWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEV 88 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCh-----------HHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 445677888888888877655 3445555666666653 2332222 333333 6677777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 026646 154 RDEKQRLKADKEKLEQ 169 (235)
Q Consensus 154 r~E~~~Lk~e~e~le~ 169 (235)
-..+..|..+|++|-+
T Consensus 89 a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 89 GARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcC
Confidence 7667777777777554
No 160
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=76.85 E-value=3.5 Score=26.22 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
+.+|...|++|-.+|..|+.++..|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455555555555555555555444
No 161
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=76.84 E-value=4.1 Score=31.15 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNE---NLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~---~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
-+|=.++.++++++..-.. .|...-..+ |....+|..+||.|++....|
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~km---Kq~YEeEI~rLr~eLe~r~~q 90 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKM---KDAYEEEIKHLKLGLEQRDHQ 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTC----
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCC
Confidence 3677777777777665332 222222222 333455666666666554443
No 162
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=76.58 E-value=17 Score=34.78 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKE----------LKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~e----------Lk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-++|+.+++.|+.+...+..+|.. |+.+..+|+++...|+.+...++.+|..
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555555543 4455556666666666666666666655
No 163
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=76.27 E-value=19 Score=33.97 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIK----------ELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~----------eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
-++|+.+++.|+.+...+..+|. +|+.+..+|+++...|+.+...++.+|..+
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655555554 344555555666666666666666666653
No 164
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=76.23 E-value=12 Score=30.01 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEK 150 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~Ek 150 (235)
|+.+++.|+..+..|+.+++++..+.
T Consensus 55 L~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 55 LEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333
No 165
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.14 E-value=19 Score=25.98 Aligned_cols=6 Identities=0% Similarity=-0.020 Sum_probs=2.1
Q ss_pred HHHHHH
Q 026646 138 NLQEKI 143 (235)
Q Consensus 138 ~L~~ei 143 (235)
.++.++
T Consensus 24 ~~e~~l 29 (81)
T 1ic2_A 24 QAEADK 29 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 166
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=75.95 E-value=11 Score=28.34 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRL 160 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~L 160 (235)
+|++|...|..+..|++.|+.|+..|
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 167
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=75.77 E-value=5.3 Score=25.23 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
+++|...|++|-.++..|+.++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35566666666666666665555543
No 168
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=75.28 E-value=11 Score=24.74 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
+++|+.-+++|++.|..|..--+.|+-.+.||.
T Consensus 5 vkelknyiqeleernaelknlkehlkfakaele 37 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence 455555666666655555443334444444443
No 169
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.20 E-value=11 Score=31.21 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=7.7
Q ss_pred chhhHHHHHHHH
Q 026646 110 DKATILSDAVQM 121 (235)
Q Consensus 110 dKasIL~dAIeY 121 (235)
+|.+.|.|....
T Consensus 13 n~qs~LeD~L~~ 24 (154)
T 2ocy_A 13 DKQSHLEEQLNK 24 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhhccHHHHHHH
Confidence 566777776554
No 170
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=75.17 E-value=6.3 Score=35.97 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=29.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+.+++|.+++.+|+..|.....++..|+.....+++.|.+|+++|..+
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666655543
No 171
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.12 E-value=18 Score=27.27 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=7.8
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 026646 129 AQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 129 v~~L~~e~~~L~~ei~eLk~ 148 (235)
..+++.++..|+.++..|..
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 33333344444444433333
No 172
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.94 E-value=19 Score=28.36 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 115 LSDAVQMMEQLRTEAQKLKQ---SNENLQEKIK-------ELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~---e~~~L~~ei~-------eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|..-..-|.+|++++.+++. +..-|+.++. .=+.....+..||..|..++..|+.|+..+
T Consensus 40 L~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 40 LVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 33344445555555555554 3334444432 223334567888888888888888887543
No 173
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=74.86 E-value=18 Score=34.64 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEK 150 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~Ek 150 (235)
.|-++..++..+.+.|+.+.+.+.+++
T Consensus 74 ~ld~~~r~~~~~~~~l~~~rn~~sk~i 100 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEKEAVTEAV 100 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333333
No 174
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=74.78 E-value=5.8 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
+++|...|++|-.++..|+.++..|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555566665555555555554443
No 175
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=74.57 E-value=14 Score=33.62 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026646 151 NELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~le~qlk 172 (235)
.||..|...|..+++.++.|++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 176
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=74.41 E-value=24 Score=26.17 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
.|...++.+..++..|......+..+.+.++.+|..+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555556666666666666654
No 177
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=74.37 E-value=20 Score=26.89 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=6.5
Q ss_pred HHHHHhHHHHHHHHHHH
Q 026646 131 KLKQSNENLQEKIKELK 147 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk 147 (235)
+++.+...|+.++..|.
T Consensus 41 ~~E~ei~sL~kKiq~lE 57 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 33333333433333333
No 178
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.33 E-value=13 Score=31.87 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
|=..|..|+.++..|.++++...++|+.|+.+...|+...
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334666777666666666666666666665555554433
No 179
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=74.32 E-value=27 Score=29.33 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 026646 90 LNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 90 INd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L 139 (235)
-.+.+..|+..+..| +-.||.-+. -.||+=|+.+...++......
T Consensus 53 ~~~k~~qlre~~d~g--tt~~~i~~m---~~yI~llrErea~lEqkVaeq 97 (169)
T 3k29_A 53 YMQKIRQLREQLDDG--TTSDAILKM---KAYIKVVAIQLSEEEEKVNKQ 97 (169)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345588899999877 566665544 457777777777666654433
No 180
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.29 E-value=12 Score=29.27 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIK 144 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~ 144 (235)
-|..|+.+++.++..+..|+..+.
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444444444444444444433
No 181
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=74.16 E-value=24 Score=26.09 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 148 AEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 148 ~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.=.++|..|...|...++.|....+.
T Consensus 46 ~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 46 EMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666555444
No 182
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=73.90 E-value=4.6 Score=25.63 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
+.+|...|++|-.++..|+.++..|+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45566666666666666665555543
No 183
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=73.61 E-value=14 Score=27.67 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHH-HHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQ-KLK---QSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 119 IeYIk~Lq~qv~-~L~---~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
..|=+.|=.+.+ .|. ++|+.|...|..|..|+..|+.++..|+.
T Consensus 27 e~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356665544322 222 35555555555555454444444444443
No 184
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=73.50 E-value=12 Score=27.84 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKAD 163 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e 163 (235)
+|++|..+|..+..+++.|++||..|+.-
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544433
No 185
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=73.26 E-value=14 Score=27.14 Aligned_cols=49 Identities=27% Similarity=0.463 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNE--L----RDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknE--L----r~E~~~Lk~e~e~le~qlk 172 (235)
.+|.+.+.|...++.|..+|..|..+.+. + -+..+.|..++..++.+|.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555542 1 1233444555555555544
No 186
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=73.00 E-value=4.6 Score=25.69 Aligned_cols=26 Identities=12% Similarity=0.359 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
+++|...|++|-.+|..|+.++..|+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777777777777777666654
No 187
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=72.92 E-value=5.4 Score=25.35 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 026646 149 EKNELRDEKQRL 160 (235)
Q Consensus 149 EknELr~E~~~L 160 (235)
++++|+.+|..|
T Consensus 15 DIddlkrQN~~L 26 (34)
T 1a93_B 15 DIDDLKRQNALL 26 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 188
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=72.90 E-value=5.6 Score=25.26 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
+|..++++|-.++.+|.+|..+|+
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444555555555555555555443
No 189
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=72.66 E-value=6.7 Score=33.29 Aligned_cols=29 Identities=14% Similarity=0.349 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEK 142 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~e 142 (235)
||.-+++-+..|+.++++|+++|+.|+.+
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554433
No 190
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.49 E-value=10 Score=35.69 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
|..+|++++.-|+......-..|+.|+..+.+++.+.++|...|
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554332222245555555555555555554444
No 191
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.29 E-value=12 Score=29.11 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
+.++..+..|+.++.+++.++.....|+.+|-+=|..|..||.-
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIat 121 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIAT 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666665543
No 192
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=71.71 E-value=21 Score=27.33 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQ---EKIKELKAEKNELRD-------EKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~---~ei~eLk~EknELr~-------E~~~Lk~e~e~le~qlk~ 173 (235)
|..|-+.+..-+..+.+|+++..+++ +.|.-|++...-.++ .-.++..+|+.|+.+|..
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQ 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444555555555544443 344444444332222 222444445555555444
No 193
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.55 E-value=13 Score=29.10 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
+.++..+..|+.++.+++.++.....|+.+|-+=|..|..||..
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIat 123 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666666666644
No 194
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=71.33 E-value=14 Score=27.69 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
|.+|++--++|+.++..|+.++..|+++..+|
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444443
No 195
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=71.07 E-value=19 Score=26.22 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
.|+..+..|..+++.|..+++.+..+...+++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~e 34 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555555544443
No 196
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=71.06 E-value=8.7 Score=30.49 Aligned_cols=36 Identities=6% Similarity=0.179 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-|.+++++|..++.+|+.-...|...++.++..++.
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444445555555554455555555555554444
No 197
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=71.04 E-value=19 Score=33.83 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
.|.++.++|+.++.+|..+...+..++
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444444333
No 198
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=71.02 E-value=16 Score=24.25 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=15.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 130 QKLKQSNENLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
.+|+.....|+....+|....+-|..||+.|+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444444444444444444444444444443
No 199
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=70.87 E-value=4.8 Score=35.23 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 111 KATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 111 KasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
-.-||+--|.|++.=+++.... +++.++.++++.+.+.|..|+..+++++++|+.+++.
T Consensus 122 t~~iLSalINF~~FRE~~~~~~----~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 122 TSRFLSGIINFIHFREACRETY----MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457888888888655544332 2233334444444455555555555555555555554
No 200
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=70.64 E-value=19 Score=28.42 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=18.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
|+...+.|.++|++|+.-...|.......+..+...+.++..
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~ 127 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKD 127 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444444444444444444444444444444444444
No 201
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=70.56 E-value=16 Score=31.70 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQ----KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 120 eYIk~Lq~qv~----~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.|=+.|=.+.+ .--.+|+.|..+|..|..|++.|+.|+..|+.-.+..+....
T Consensus 97 ~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~ 153 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAE 153 (209)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543322 222467777777777777777777777777766666555433
No 202
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=70.45 E-value=29 Score=25.37 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 026646 125 LRTEAQKLKQSN 136 (235)
Q Consensus 125 Lq~qv~~L~~e~ 136 (235)
|+++.+.+....
T Consensus 13 lq~~~~~l~~q~ 24 (107)
T 1fxk_A 13 LQQQAQAISVQK 24 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 203
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=70.45 E-value=60 Score=31.02 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026646 153 LRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk~ 173 (235)
|+.....|+..|.+|+..+..
T Consensus 173 L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 173 LRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555543
No 204
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.38 E-value=13 Score=34.52 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+-|+.|+++..+|++++++++.++++|+.+..+...+.-.|.+++..|...|+.
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 456778889999999999999999998877666666666777777777766666
No 205
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=70.34 E-value=13 Score=26.13 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEK 142 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~e 142 (235)
..+=+-+.+|++....|-.....|+..
T Consensus 7 tRse~q~~kLKq~n~~L~~kv~~Le~~ 33 (58)
T 3a2a_A 7 TRSERQLLRLKQMNVQLAAKIQHLEFS 33 (58)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444444433
No 206
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=70.12 E-value=21 Score=33.19 Aligned_cols=53 Identities=19% Similarity=0.368 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 122 MEQLRTEAQKLKQSNENLQE--------KIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~--------ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
-++|+.+++.|+.+...+.. +..+|+.+..+|+++...|+.+...++.+|..+
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444433 345667777777777777777777777777764
No 207
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=70.11 E-value=23 Score=30.94 Aligned_cols=63 Identities=8% Similarity=0.132 Sum_probs=50.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 108 KTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 108 K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
..+...|..-....++.++.+...|.+..++.+++++.+.+...+.|...+.++..-+++--+
T Consensus 159 ~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 159 PGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 356777777778888888888888898888888888888888888888888888777665433
No 208
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=69.97 E-value=30 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 026646 153 LRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk~~ 174 (235)
..+....|.+.+..|+.+|+-+
T Consensus 61 aEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 61 LEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666654
No 209
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.95 E-value=14 Score=27.44 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCCCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026646 90 LNERFLELGSMLEPGRP--PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 90 INd~F~eLrslLP~~~~--~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~ 157 (235)
+..-..+|..+= .... .....+-|..+--+.+..|..+.+.++.+...|..++.++..+.++++...
T Consensus 39 ~~~~~~eL~~l~-~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 39 AKKALDEIESLP-DDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHTSC-TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666543 3321 234445555555556666677777777777777777666666666666443
No 210
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=69.82 E-value=5.9 Score=25.16 Aligned_cols=26 Identities=12% Similarity=0.368 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
+++|...|++|-.++..|+.++..|+
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 45666666666666666666665554
No 211
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=69.76 E-value=18 Score=29.28 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc
Q 026646 89 RLNERFLELGSM 100 (235)
Q Consensus 89 kINd~F~eLrsl 100 (235)
+++||+.+|+..
T Consensus 6 ~mkDRl~eL~~~ 17 (180)
T 1s94_A 6 RTKDRLAALKAA 17 (180)
T ss_dssp ------------
T ss_pred chhHHHHHHhcc
Confidence 356677777763
No 212
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=69.68 E-value=19 Score=31.13 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
|.+|++--++|+.++..|+.++..|++++.+|
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776666666666555544
No 213
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.53 E-value=21 Score=27.69 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 130 QKLKQSNENLQEKIKELKA-------EKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk~-------EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
-.|+...+.++++...|+. ...+|..|..+|+.|..+|-++=+.+
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555544444 33455555556666666555555544
No 214
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.52 E-value=8.5 Score=32.94 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
-+.-+..|.++++....+++.|++++..|+.....+.++++
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 33345566666666666666666666666665554444443
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.43 E-value=6.8 Score=36.66 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
|+.++++|+.+++.|+.+.++++.+.+.++.|...++.|+++++.
T Consensus 47 l~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 47 IYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333344444444444444444555555555555555566665543
No 216
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.37 E-value=22 Score=34.14 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
.|.++.++|+.++.+|.++...+..++..+
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666665555555554443
No 217
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=69.27 E-value=30 Score=25.83 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
...+.|-++...|+-++.+|..|+.......-.-|.|+-.|++||..
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34445555555555556666555555544444555666666666653
No 218
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=69.13 E-value=18 Score=34.90 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHH
Q 026646 90 LNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQS----NENLQEKIKELKAEKN 151 (235)
Q Consensus 90 INd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e----~~~L~~ei~eLk~Ekn 151 (235)
++.++.+|+..|-.....-.+--.......+++++-+.+++..+.. .+.|+.+|.+|+..++
T Consensus 63 v~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd 128 (491)
T 1m1j_A 63 YSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVA 128 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555554321112333445566667777666666554432 2345555566655544
No 219
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=68.88 E-value=29 Score=25.91 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
...++.+++..+..|..|..+++.|+.+..+|+.
T Consensus 40 ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 40 NQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344445555566666666666666666655553
No 220
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=68.63 E-value=6.5 Score=24.95 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
+++|...|++|-.++..|+.++..|+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555666666666655555555543
No 221
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=68.39 E-value=13 Score=23.99 Aligned_cols=27 Identities=37% Similarity=0.494 Sum_probs=15.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
+.++|..+.+.-.++|..|+.|..+|.
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 555666666666666666655554443
No 222
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=68.13 E-value=16 Score=42.50 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
..|-+-++++++++++++++.+.|+++.+++..|+..|++|..
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777777776666666666655443
No 223
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.13 E-value=36 Score=25.57 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 026646 156 EKQRLKADKEKLEQQV 171 (235)
Q Consensus 156 E~~~Lk~e~e~le~ql 171 (235)
|..+|+++....+.||
T Consensus 75 E~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 75 ELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 224
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=68.09 E-value=16 Score=31.00 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAEKN 151 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ekn 151 (235)
+|..|-..+..|+.+|.+|+.+.+.|+.|-|
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888887777777665555544443
No 225
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=67.86 E-value=0.22 Score=39.18 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+++.+|..++..|..++..|+.|...+..++..
T Consensus 57 ~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~ 90 (107)
T 3a5t_A 57 VTQKEELEKQKAELQQEVEKLASENASMKLELDA 90 (107)
T ss_dssp HHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444444444443
No 226
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=67.68 E-value=11 Score=23.29 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKE 145 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~e 145 (235)
|++++..|+++...|.=+|..
T Consensus 7 lkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333
No 227
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=67.52 E-value=33 Score=25.81 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
.++..+..|+.+..+++.++.....|+.+|-+=|..|..||..-..
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666555556666666666666666654443
No 228
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=67.08 E-value=20 Score=26.94 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIK 144 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~ 144 (235)
|.+|.+--++|+.++..++.++..|+++..
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555554444444444443
No 229
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=66.90 E-value=39 Score=28.26 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=46.2
Q ss_pred chhhHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 026646 110 DKATILSD---AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAP 177 (235)
Q Consensus 110 dKasIL~d---AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~ 177 (235)
.+.+|+.. -...|..|+..-++|............+|..+.|.|+-|...|...+++.-.-|+..++.
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~ 160 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGAR 160 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44445443 233445555566666666666666677888888888888888888888877777776654
No 230
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=66.63 E-value=40 Score=25.77 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 150 KNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 150 knELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
...+..|+..|..++..|+.++..++
T Consensus 63 REkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 63 REKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655443
No 231
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=66.25 E-value=3.7 Score=27.95 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKI 143 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei 143 (235)
.||..|+.++..|+..+..|+..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888877776544
No 232
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=66.13 E-value=5.2 Score=27.49 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 026646 121 MMEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L 139 (235)
||.++-...+.|..+|..|
T Consensus 28 FLd~v~~~~~~l~~e~~~L 46 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTEL 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 233
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=65.81 E-value=16 Score=26.65 Aligned_cols=30 Identities=20% Similarity=0.415 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
|..|+.+..+|..|+..|+.+++.|.++|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555655554
No 234
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=65.80 E-value=57 Score=30.75 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
...+++|-+.+..++.+++..+......|++|+...+-.+.....|+..+
T Consensus 79 ~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v 128 (411)
T 3ghg_C 79 IDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKV 128 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788877778888877777777777777666544444444444333
No 235
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=65.60 E-value=24 Score=26.20 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
|.+|.+--++|+.++..++.++..|+++++.|
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666666665555555555444
No 236
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.52 E-value=6.3 Score=37.03 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 136 NENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 136 ~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
...|+.+++.|+.|...+..|+..++.++..++.+++.+..+|.
T Consensus 34 ~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~ 77 (434)
T 4b4t_M 34 AKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPY 77 (434)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 33344455555555555666666666667777777776666554
No 237
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=65.42 E-value=17 Score=33.86 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+.+|+++.++|++++++++.++++++.+..+...+.-.|.+++..+..-++.
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 5667777888888888888888777776666555666777777776666665
No 238
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=65.15 E-value=40 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
-|++++...+.+...|.+++.+|+.....|..|..
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555556666555555555544
No 239
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=64.97 E-value=42 Score=26.08 Aligned_cols=63 Identities=14% Similarity=0.350 Sum_probs=34.2
Q ss_pred chhhHH--HHHHH-HHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 110 DKATIL--SDAVQ-MMEQLRTEAQKLKQSNENLQE---KIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 110 dKasIL--~dAIe-YIk~Lq~qv~~L~~e~~~L~~---ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+..+|- +.||. .-+.||+-..+|...-.++.+ +.+++..+..+|-..+..|..|+-++...+|
T Consensus 39 NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 39 NTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344443 33444 445566655555544433333 3344444555666666677777777766665
No 240
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=64.86 E-value=12 Score=28.67 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQ--SNENLQEKIK-ELKAEKNELRDEKQRLKA--DKEKLEQQVKA 173 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~--e~~~L~~ei~-eLk~EknELr~E~~~Lk~--e~e~le~qlk~ 173 (235)
|+.....=|.+|+..+..|=. ...+|+..|+ +|....+.|+.+...|.. .++||-.++..
T Consensus 11 li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~ 75 (97)
T 1hs7_A 11 LIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKN 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 455555555555555544432 3355666666 666666666665554444 56666666554
No 241
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=63.98 E-value=38 Score=24.46 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
|..+.+.+......|..++..++.+......|-+.|-.=|-.|+.+|..
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665555666666666677777655
No 242
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=63.94 E-value=62 Score=29.44 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
+.++..+...|+-.-.+|.++++-|++.|..++.
T Consensus 361 ~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 394 (406)
T 4dyl_A 361 LQEALQGLQVALCSQAKLQAQQELLQTKLEHLGP 394 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC
Confidence 4566667777888888999999999999998875
No 243
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=63.84 E-value=22 Score=33.01 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEK--------NELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ek--------nELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+-|..|-++..++..+.+.|+.+.+.+.+++ .+|..+...|+.++..++.+++.+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555554444444332 233444444444444444444443
No 244
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=63.43 E-value=16 Score=22.58 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
.+|..++.+.+.+|-+|.+++..|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555555555555555554443
No 245
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=63.35 E-value=40 Score=24.46 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026646 148 AEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 148 ~EknELr~E~~~Lk~e~e~ 166 (235)
..+..|..+...++.+..+
T Consensus 33 ~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 33 DTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 246
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=63.34 E-value=43 Score=24.78 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
....+++.+..++.+|+.+...++.+++.++.++.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666666666666666654
No 247
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=63.11 E-value=41 Score=24.45 Aligned_cols=43 Identities=7% Similarity=0.315 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQR 159 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~ 159 (235)
.+..-|+.+..+.+.|+.....|+..+++-+.+-+.++.|...
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888887777766666665543
No 248
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=62.38 E-value=31 Score=22.90 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=8.1
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 026646 130 QKLKQSNENLQEKIKELK 147 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk 147 (235)
.+|+.+...|..+.+.|+
T Consensus 6 aqlenevaslenenetlk 23 (49)
T 3he5_A 6 AQLENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHH
Confidence 344444444444444443
No 249
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=62.37 E-value=47 Score=27.02 Aligned_cols=55 Identities=13% Similarity=0.309 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 120 QMMEQLRTEAQKLK-------QSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 120 eYIk~Lq~qv~~L~-------~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+|++.|..+++.-+ ......++.+.+.+...++.++-..++++-+.+|...+..+
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45666655544322 22223334455555556666666666666666666666543
No 250
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.82 E-value=17 Score=27.00 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 026646 139 LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAP 177 (235)
Q Consensus 139 L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~ 177 (235)
+..++.++..+..+|+.+...++++++.++..+..+..+
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~ 46 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA 46 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333445555556666666667777777777777776553
No 251
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=61.75 E-value=28 Score=24.48 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=23.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
|......-.+.+...+.|+.|||...+.|..|++.+.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333344456667777788878888888877653
No 252
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=61.57 E-value=35 Score=25.42 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKL 132 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L 132 (235)
|-++|.++.-+++.+
T Consensus 46 A~ell~qMelE~~~~ 60 (97)
T 3onj_A 46 LFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 333344444344333
No 253
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=61.35 E-value=8.3 Score=26.43 Aligned_cols=23 Identities=17% Similarity=0.305 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 148 AEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 148 ~EknELr~E~~~Lk~e~e~le~q 170 (235)
.+...|..|+..|+.++++|+.+
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444444443
No 254
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.88 E-value=53 Score=25.46 Aligned_cols=51 Identities=25% Similarity=0.355 Sum_probs=29.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 108 KTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 108 K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
+.+|.++|+..+. .+++++.|+.++.+|+..+.+...-..++-.+++.|..
T Consensus 3 ~~e~~~~~~~~~~----~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~ 53 (125)
T 1joc_A 3 QDERRALLERCLK----GEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQI 53 (125)
T ss_dssp CHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 3456666665543 34456666666666666665555555566555555543
No 255
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=60.57 E-value=26 Score=26.89 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
+.+|..+.+.|+.+.+.|.+.+..|+....+++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~ 35 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444433
No 256
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=60.17 E-value=4.3 Score=35.51 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=30.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 108 KTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 108 K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+.++..+..+.+.-..++..+.+.|..++..++.+|+.|+.+..+...|..-.+.....|...+..
T Consensus 136 RE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~ 201 (250)
T 2ve7_C 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSK 201 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 346666666666666666666666666666666666666555444443333333344444444444
No 257
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.89 E-value=26 Score=25.82 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 144 KELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 144 ~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
++|..+...+..++..|+.+.+.|..+|..+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444455544443
No 258
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=59.67 E-value=12 Score=33.64 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
+++.|+.+++.|++++++|+.+++.+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555555555555555555444443
No 259
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=59.63 E-value=13 Score=23.56 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 140 QEKIKELKAEKNELR 154 (235)
Q Consensus 140 ~~ei~eLk~EknELr 154 (235)
+.+|++|+.+.+-|+
T Consensus 13 qqDIddlkrQN~~Le 27 (34)
T 1a93_B 13 QQDIDDLKRQNALLE 27 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 333333333333333
No 260
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=59.22 E-value=31 Score=31.38 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKI 143 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei 143 (235)
+|+..|+++.++|.++.+++..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666666666666666665443
No 261
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=58.95 E-value=38 Score=25.37 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 124 ~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
+|+.+++.|+.+..+|..++.+++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554443
No 262
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=58.88 E-value=30 Score=28.64 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=32.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 127 TEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 127 ~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
++++.|+.++..+++.|+.-+....||......+++=++|-++--
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777888887777777888777777777666654443
No 263
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=58.83 E-value=23 Score=29.73 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 126 RTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 126 q~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
++..+.|.....+|+..+..|..+++.|..+...|+..+.+++.-+
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555555544443
No 264
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=58.77 E-value=37 Score=31.66 Aligned_cols=91 Identities=18% Similarity=0.332 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcCCCC----CC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH-H-HHHHHHHHHHHHH
Q 026646 86 RRDRLNERFLELGSMLEPG----RP----PKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQE-K-IKELKAEKNELRD 155 (235)
Q Consensus 86 RRekINd~F~eLrslLP~~----~~----~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~-e-i~eLk~EknELr~ 155 (235)
+-+.+..+|.+|...+-.. .+ .-+...+-|...++.+++|++..+.++.-.+-+.+ + -.++ +.++.+
T Consensus 18 ~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~---~~~a~~ 94 (371)
T 1zbt_A 18 QLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPEL---EEMAKE 94 (371)
T ss_dssp HHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHH---HHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHH---HHHHHH
Confidence 4456777888887766421 11 11233466777777777777766666655444332 1 1112 245677
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Q 026646 156 EKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 156 E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
|...|+.+++.++.+|+.+=.|.+
T Consensus 95 e~~~l~~~l~~le~~l~~lLlp~~ 118 (371)
T 1zbt_A 95 ELKNSKVAKEEYEEKLRFLLLPKD 118 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 888999999999999997654443
No 265
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=58.71 E-value=46 Score=23.63 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 136 NENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 136 ~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~q 170 (235)
+..-+.+|+.|-+-.+.|.+|...|..++.+|+.+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 33334556666666667777777676666666654
No 266
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=58.38 E-value=7.2 Score=31.03 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKI 143 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei 143 (235)
.+-|..|+.+..+|++++++|+.++
T Consensus 31 ~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 31 PKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555443
No 267
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=58.32 E-value=60 Score=28.51 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=4.6
Q ss_pred HHHHHHHHHhc
Q 026646 90 LNERFLELGSM 100 (235)
Q Consensus 90 INd~F~eLrsl 100 (235)
++..+..|...
T Consensus 72 ~~~~~~~L~~~ 82 (357)
T 3rrk_A 72 AEQSLTVVGLA 82 (357)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHhccc
Confidence 33444444433
No 268
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=58.21 E-value=40 Score=31.64 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 131 KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
++.++..+|+..+.....++..|+.....+++.++.|+++|..+
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444445544455555566677777778888888888877664
No 269
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=57.96 E-value=24 Score=32.78 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKE----------LKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~e----------Lk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
++|+.+++.|+.+...+..+|.. |+.+..+|+++...|+.+...++.+|..
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444432 3334444555555555555556666555
No 270
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.70 E-value=31 Score=25.49 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
+..-|+.|..+.+.|+.....|+..+++-+.+-+.++.|..
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777776666666655554
No 271
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=57.68 E-value=40 Score=24.73 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~ 162 (235)
|++|+..+.--.+..++|..+|=.|..|.|-|++..+.|++
T Consensus 34 I~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 34 IRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 44444433333334456666666666776666666666554
No 272
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=57.63 E-value=77 Score=29.30 Aligned_cols=94 Identities=24% Similarity=0.313 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHH-HHHHHHHHHHHHH
Q 026646 86 RRDRLNERFLELGSMLEP-GRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKEL-KAE-KNELRDEKQRLKA 162 (235)
Q Consensus 86 RRekINd~F~eLrslLP~-~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eL-k~E-knELr~E~~~Lk~ 162 (235)
|=+.+..+|.+|...+-. ..-...+++.-|.+-...|+.+-....+++...+.+.+-.+-+ -.+ +.++.+|...|+.
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 335677788888887642 1111223333333332222222222222322222221111101 111 2345778889999
Q ss_pred HHHHHHHHHHhccCCCC
Q 026646 163 DKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 163 e~e~le~qlk~~~~~p~ 179 (235)
+++.++.+|+.+=.|.+
T Consensus 84 ~~~~le~~l~~lLlp~~ 100 (354)
T 3d5a_X 84 RKEALEKELERHLLPKD 100 (354)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999888654433
No 273
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=57.44 E-value=64 Score=24.85 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 158 QRLKADKEKLEQQVK 172 (235)
Q Consensus 158 ~~Lk~e~e~le~qlk 172 (235)
..|..||..|.++|+
T Consensus 70 ~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 70 KELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 274
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=57.44 E-value=28 Score=30.01 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
+....-.+..+|+...++|+.|+..|+..+++|+
T Consensus 38 ~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 38 NYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3333333444444444445555555555555554
No 275
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=57.30 E-value=56 Score=24.14 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
-..+|+++.++++-.+.. ..+|..||. |+..-.+|.+.-++.......+.++|..|...
T Consensus 32 A~~vd~~~~~i~~~~~~~---~~~r~~vma-ALnladel~~~~~~~~~~~~~~~~~i~~L~~~ 90 (104)
T 1t3u_A 32 ARYLDGKMREIRSSGKVI---GADRVAVMA-ALNITHDLLHRKERLDQESSSTRERVRELLDR 90 (104)
T ss_dssp HHHHHHHHHHHHTTTCSC---SHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999987532 356665543 44444444433333333344444444444433
No 276
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=56.96 E-value=20 Score=25.91 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026646 142 KIKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 142 ei~eLk~EknELr~E~~~Lk~ 162 (235)
++..||.++-.|+||...+..
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL~ 65 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMII 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 455666665555555554433
No 277
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=56.79 E-value=9 Score=22.91 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=5.6
Q ss_pred HHHHhHHHHHHHHH
Q 026646 132 LKQSNENLQEKIKE 145 (235)
Q Consensus 132 L~~e~~~L~~ei~e 145 (235)
|++.|..|.++|..
T Consensus 5 lkqknarlkqeiaa 18 (28)
T 3ra3_B 5 LKQKNARLKQEIAA 18 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHH
Confidence 33444444433333
No 278
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=56.73 E-value=21 Score=33.12 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhc
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKN----------ELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ekn----------ELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
++-|..|-++..++..+.++|+.+.+.+.+++. +|..+...|+.++..++.+++.+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKV 94 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555666555555555443 23344555566666666665554
No 279
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=56.72 E-value=38 Score=29.20 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 117 DAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLK 161 (235)
Q Consensus 117 dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk 161 (235)
+-.+.+.+|+.+.-..-++...|+..+..|.+|+++|+.....|+
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 445566666666555555666666666666666666666555544
No 280
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=56.70 E-value=25 Score=27.44 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKN 151 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~Ekn 151 (235)
+.+.+.++..|..+...|...++.|..|.+
T Consensus 13 L~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666654
No 281
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=56.65 E-value=45 Score=31.91 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=16.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 147 KAE-KNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 147 k~E-knELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
..+ ..+|+++...|+.+...++.+|..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 4555566666666666666666553
No 282
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=56.64 E-value=51 Score=28.98 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAE-KNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E-knELr~E~~~Lk~e~e~le~qlk 172 (235)
-+.+.+|+.+++.|+.+.+.+..++..+..+ ...|..=...+..++++.+..-.
T Consensus 225 ~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 279 (357)
T 3rrk_A 225 GKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVAD 279 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677788888888887777777777666 44555555556555555555433
No 283
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.58 E-value=29 Score=31.58 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 141 EKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 141 ~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
.+|++|..|+.+|..+...+.++++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555554
No 284
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=56.47 E-value=16 Score=26.71 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026646 152 ELRDEKQRLKADKEKLE 168 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le 168 (235)
.|.+.+..||.||-|+|
T Consensus 47 rL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 47 ILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444445554444
No 285
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=56.25 E-value=6.3 Score=26.95 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 136 NENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 136 ~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
+.+|+.-+..|......|......|..+|-.|+.
T Consensus 19 naklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3344333333433333344444444444444443
No 286
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=55.71 E-value=23 Score=22.46 Aligned_cols=24 Identities=4% Similarity=0.123 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
++|...|++|-.++..|..++..|
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444444444444333
No 287
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=54.95 E-value=29 Score=26.61 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
+..|+.++..|..+-..|-+.|+.+......+.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666555555555555555555444443
No 288
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=54.36 E-value=68 Score=24.26 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=14.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcC
Q 026646 77 GSKACREKLRRDRLNERFLELGSML 101 (235)
Q Consensus 77 ~sH~~~ERrRRekINd~F~eLrslL 101 (235)
.+|..-|+|| .+|...+.+|..-|
T Consensus 8 ~s~LPpeqRk-kkL~~Ki~el~~ei 31 (98)
T 2ke4_A 8 FSHLPPEQQR-KRLQQQLEERSREL 31 (98)
T ss_dssp SSSSCHHHHH-HHHHHHHHHHHHHH
T ss_pred hccCCHHHHH-HHHHHHHHHHHHHH
Confidence 3455566544 36766666666655
No 289
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.93 E-value=43 Score=27.09 Aligned_cols=8 Identities=38% Similarity=0.775 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 026646 165 EKLEQQVK 172 (235)
Q Consensus 165 e~le~qlk 172 (235)
.+++++|.
T Consensus 70 ~~ie~ElE 77 (135)
T 2e7s_A 70 DKLNKEVE 77 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 290
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=53.90 E-value=43 Score=23.34 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKI 143 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei 143 (235)
++-|-.|+.+++.|++++.++..-+
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888777765443
No 291
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=53.85 E-value=54 Score=22.97 Aligned_cols=37 Identities=35% Similarity=0.562 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 026646 137 ENLQEKIKELKAEKNELR--DEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 137 ~~L~~ei~eLk~EknELr--~E~~~Lk~e~e~le~qlk~ 173 (235)
+.|..+-++|+..+.||- -|......+..+|+.+++.
T Consensus 28 eelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 28 EELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 445555556666665553 2555666677777777764
No 292
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=53.65 E-value=60 Score=24.78 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
+.+|++|++ .+++.|+...+.|+..+..++.....+.+
T Consensus 86 ~~eA~~~l~---~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 86 FEDAMESIK---SQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777654 46666666666666665555555544443
No 293
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=53.30 E-value=26 Score=27.97 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKA-----EKNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~-----EknELr~E~~~Lk~e~e~le~q 170 (235)
|+++++.|...+..++.+...+.. -+.++.+|+..|..+|+++..+
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444433222111 1233444445555555554433
No 294
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=53.14 E-value=16 Score=27.60 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=15.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSN 136 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~ 136 (235)
..|-..|.++-..|.+...-+++|+-|.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555565555555555555555443
No 295
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=52.77 E-value=67 Score=30.69 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026646 157 KQRLKADKEKLEQQVKA 173 (235)
Q Consensus 157 ~~~Lk~e~e~le~qlk~ 173 (235)
...|+.++..|+.+++.
T Consensus 113 ~~~l~~~i~~le~~~~~ 129 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQ 129 (484)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 296
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=52.61 E-value=12 Score=28.62 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 155 DEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 155 ~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
.+...|+.++++++.+|+.+..+|.
T Consensus 14 ~~~~~l~~~i~~lkeel~~L~~~P~ 38 (109)
T 2wg5_A 14 DKVEELLSKNYHLENEVARLRSPPL 38 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3334444556666666666666664
No 297
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=52.42 E-value=21 Score=29.14 Aligned_cols=37 Identities=27% Similarity=0.547 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCC--CCCCCCCchhhHHHHHHHHHHHH
Q 026646 89 RLNERFLELGSMLE--PGRPPKTDKATILSDAVQMMEQL 125 (235)
Q Consensus 89 kINd~F~eLrslLP--~~~~~K~dKasIL~dAIeYIk~L 125 (235)
.|+-.|..|..+|| ++.+.+.-|--||..|.+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 47889999999999 45567899999999999998766
No 298
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.17 E-value=39 Score=22.32 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
|-+++++...+.++-+++|.+|+....+|.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666655555544443
No 299
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=52.15 E-value=20 Score=25.82 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.+.|.+|..+.++-.+|...|+.++.+++.-|.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445666666666666666666666666655444
No 300
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=52.07 E-value=14 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 144 KELKAEKNELRDEKQRLKADKEKLEQ 169 (235)
Q Consensus 144 ~eLk~EknELr~E~~~Lk~e~e~le~ 169 (235)
+.|+.+.++|+++...++.++++|+.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555556666666666666666654
No 301
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=51.99 E-value=70 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=17.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 026646 109 TDKATILSDAVQMMEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 109 ~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L 139 (235)
..|-..|.++=+.+.+...-+++|+-|...+
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555556666666666666666655555544
No 302
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=51.55 E-value=67 Score=23.33 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKA-------EKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~-------EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|+.|+.++.+|+..-.+....+.+|.. ++-++-.+.-..-.+.+.+..+|+.+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888777777777666643 22344445555556666666666654
No 303
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=51.05 E-value=68 Score=23.27 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
+-|..+--+.+..|..+.+.++.+...|..++.++..+.+++
T Consensus 57 vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 57 ILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444333333
No 304
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=50.99 E-value=20 Score=30.60 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQE 141 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ 141 (235)
+.-+++-|..|+.++..|+++|++|..
T Consensus 156 i~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 156 ICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555443
No 305
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=50.81 E-value=35 Score=22.46 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
..+.+.+|+.+-+.|++....|..++..|...
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777776666555433
No 306
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=50.35 E-value=54 Score=27.58 Aligned_cols=25 Identities=4% Similarity=0.092 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L 139 (235)
+.-|.+-|..|+.++..|+.++...
T Consensus 130 i~~AertV~kLqkeiD~LEDeL~~e 154 (175)
T 3mud_A 130 ICYCLDTTAKNEKSIDDLEEKVAHA 154 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555554444444333
No 307
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=50.17 E-value=21 Score=27.36 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 143 IKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 143 i~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+..|+.|...|..+=..|...|..++++|+.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666666664
No 308
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=50.03 E-value=0.25 Score=38.77 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 135 SNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+...|+.++..|..+++.|..|+..|+.|++.+..+++++
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666555544
No 309
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=49.40 E-value=55 Score=25.76 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
+.+|++|++ .+++.|+...+.+...+..++.....+.
T Consensus 96 ~~eA~~~l~---~ri~~l~~~l~~l~~~l~~l~~~i~~~~ 132 (151)
T 2zdi_C 96 IDEAISFLE---KRLKEYDEAIKKTQGALAELEKRIGEVA 132 (151)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777754 4666666666666666555554444444
No 310
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.08 E-value=18 Score=33.75 Aligned_cols=45 Identities=16% Similarity=0.351 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
++++++.....+.+.++.|..+.++ |+.+...++.+++.+..+|.
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~-------l~~~~~~~~~e~~~l~~~~~ 70 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNA-------LNDKVRFIKDELRLLQEPGS 70 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCc
Confidence 3444444444444444444444444 44555556666666655553
No 311
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=48.35 E-value=19 Score=21.94 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
|..-...|+.+|.+|..++++|-
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556655555555543
No 312
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=47.94 E-value=76 Score=26.45 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhcC
Q 026646 87 RDRLNERFLELGSML 101 (235)
Q Consensus 87 RekINd~F~eLrslL 101 (235)
.++|-+-|..++.-|
T Consensus 33 yd~l~e~y~r~sqEi 47 (170)
T 3l4q_C 33 YDQLYEEYTRTSQEL 47 (170)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHH
Confidence 456666666666655
No 313
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=47.89 E-value=50 Score=31.84 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
-+|..+|+.++.-|+.....--+.|+.|+.-+.+++.+.++|...|.
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888888776543337778888888888877777776653
No 314
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=47.67 E-value=63 Score=24.02 Aligned_cols=54 Identities=11% Similarity=0.272 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 121 MMEQLRTEAQKLKQSNENLQEKIKELKAE-------KNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~ei~eLk~E-------knELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
=|+.|+.++.+|+..-.+....+++|..+ +-++-.+.-..-.+.+.+..+|+++
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766666666666442 2334444445556666666666654
No 315
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=47.30 E-value=15 Score=33.50 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
++.+|+.....++++|+.|+...++++.+.+.|+..+..|+..+.
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555555555555555555555566666666655544
No 316
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.23 E-value=1e+02 Score=24.13 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 026646 124 QLRTEAQKLK 133 (235)
Q Consensus 124 ~Lq~qv~~L~ 133 (235)
.|+.+...|+
T Consensus 10 ~lq~~~~ql~ 19 (112)
T 1x79_B 10 KLQLMLRQAN 19 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 317
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=47.18 E-value=1.1e+02 Score=26.78 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 82 REKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 82 ~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
-=|.||++|.+.+..|..-=|.. .| |..|++++.+.+.++..-+.++..+|.+
T Consensus 108 p~R~~R~~l~~~I~kLk~k~P~s-----~k----------l~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 108 PSRDRKEKITDEIAHLKYKDPQS-----TK----------IPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC-----TH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCC-----ch----------HHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 34679999999999998764432 22 5567777777666665544455444443
No 318
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=47.13 E-value=1.1e+02 Score=25.13 Aligned_cols=51 Identities=18% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEK--------------IKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~e--------------i~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
|.+|++.++.|..+.+..+++ +..|+...+--+.|...|++|...++..|.
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~ 77 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE 77 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
No 319
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=46.85 E-value=12 Score=22.36 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=11.3
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 026646 131 KLKQSNENLQEKIKELKAEK 150 (235)
Q Consensus 131 ~L~~e~~~L~~ei~eLk~Ek 150 (235)
.|+-+|..|+++|..|++.+
T Consensus 4 alefendaleqkiaalkqki 23 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHH
Confidence 35555666666666555444
No 320
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=46.11 E-value=1.2e+02 Score=24.72 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=38.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 108 KTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKE-------------LKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 108 K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~e-------------Lk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
...|..++..--.-|.+|..+.+.|+.+..++..+++. +..=...+..|++.+...+..|..|++.+
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666655554433332 00111234456677777777777777764
No 321
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=45.77 E-value=35 Score=25.70 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQ-SNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~-e~~~L~~ei~eLk~EknELr~E~ 157 (235)
|.+|-++|.++.-+++.+-. ....+..+++..+.+.+.|+.|.
T Consensus 58 ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 58 QQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
No 322
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=45.50 E-value=37 Score=30.82 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 142 KIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 142 ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
.|+.|....++|+++.+.|+..+.
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~ 52 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIK 52 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454445555544455544433
No 323
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=45.42 E-value=67 Score=29.51 Aligned_cols=40 Identities=18% Similarity=0.441 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKI-------KELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei-------~eLk~EknELr~E~~~Lk~e~ 164 (235)
|+.+++.++...++|++++ .++..+.|-|+-|...|+..+
T Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~r 256 (373)
T 3hhm_B 210 LKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTR 256 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 4444444444444444443 344444444444444444433
No 324
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.92 E-value=68 Score=21.50 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 026646 158 QRLKADKEKLEQQV 171 (235)
Q Consensus 158 ~~Lk~e~e~le~ql 171 (235)
..|+.||-+|+.++
T Consensus 34 anlrdeiarlenev 47 (52)
T 3he5_B 34 ANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 325
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=44.60 E-value=1.1e+02 Score=23.61 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=8.1
Q ss_pred HHHHHhcCCCCCCCCCchhhH
Q 026646 94 FLELGSMLEPGRPPKTDKATI 114 (235)
Q Consensus 94 F~eLrslLP~~~~~K~dKasI 114 (235)
+..|+..|.. ...+|+.+
T Consensus 22 I~~LR~qid~---~~~e~a~l 39 (119)
T 3ol1_A 22 MRELRRQVDQ---LTNDKARV 39 (119)
T ss_dssp HHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHH
Confidence 3445555532 23455554
No 326
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=44.56 E-value=1e+02 Score=23.52 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLK 133 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~ 133 (235)
.++-+++++|..++.+++
T Consensus 25 ~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 25 VDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666555544
No 327
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=44.51 E-value=18 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
+++++.||..+.||.+.+..|..|..-|.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777766655443
No 328
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=44.46 E-value=60 Score=21.68 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhc
Q 026646 151 NELRDEKQRLKADK-EKLEQQVKAM 174 (235)
Q Consensus 151 nELr~E~~~Lk~e~-e~le~qlk~~ 174 (235)
.|+|.|.+.+|.|| +-+.++|...
T Consensus 18 ~E~RkElqK~K~EIIeAi~~El~~~ 42 (45)
T 1use_A 18 EEVKKELQKVKEEIIEAFVQELRKR 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666666666664 3355555443
No 329
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.45 E-value=1.1e+02 Score=25.39 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHh
Q 026646 159 RLKADKEKLEQQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~le~qlk~ 173 (235)
.|-.|+..|+.++..
T Consensus 117 aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 117 AVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555444
No 330
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=43.84 E-value=1.2e+02 Score=24.30 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 120 QMMEQLRTEAQKLKQ-SNENLQEKIKELK--------AEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~-e~~~L~~ei~eLk--------~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
+-.++|+++++.|+. +...+-..+.+.. .++..-+++...+...+..|+..|....+
T Consensus 9 ~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~v 74 (158)
T 1grj_A 9 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQV 74 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCee
Confidence 446778888888876 4555555554443 34455666777888899999999998543
No 331
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=43.61 E-value=85 Score=26.36 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQ 158 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~ 158 (235)
=.+.+++|+.++..|+.++...|.+...++++..
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888887777666666665543
No 332
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.51 E-value=26 Score=31.37 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEKNELRDEK 157 (235)
Q Consensus 135 e~~~L~~ei~eLk~EknELr~E~ 157 (235)
+.+.|.++++.|..|..+|+.+.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 333
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=43.21 E-value=36 Score=28.51 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQ---QVKAM 174 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~---qlk~~ 174 (235)
|....+.|......|..++..|..+.+.|..+++.++. +++.+
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~ 92 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQF 92 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667777777778888888888888877 44444
No 334
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=42.02 E-value=91 Score=28.90 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026646 152 ELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~q 170 (235)
++.+|...|+.+++.++.+
T Consensus 98 ~a~~e~~~l~~~l~~le~~ 116 (365)
T 1gqe_A 98 EAVAELDALEEKLAQLEFR 116 (365)
T ss_dssp HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666653
No 335
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=42.01 E-value=1e+02 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 149 EKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|+-+|......-+-||+.|..++.-+
T Consensus 64 EKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 64 EKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 33333333333444555555555544
No 336
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=41.98 E-value=57 Score=24.07 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQK 131 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~ 131 (235)
-..+|+.||+.++.+-+.
T Consensus 9 ~~~~A~~YvnkVK~rF~~ 26 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQG 26 (89)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 478999999999987543
No 337
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=41.77 E-value=1.4e+02 Score=24.34 Aligned_cols=54 Identities=26% Similarity=0.410 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHh
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNEL--R-----DEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL--r-----~E~~~Lk~e~e~le~qlk~ 173 (235)
.-++.|.....+-.+.-..+.++|+.|+....+. | .....|..++++|+..|..
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444455556666677776655433 2 3455888888888888765
No 338
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=41.72 E-value=89 Score=22.75 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKL 167 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~l 167 (235)
|..-|+++-.+++.|+.....+...+..|.++--.|..+...++..++-+
T Consensus 19 a~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777666666666555555554443
No 339
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=41.19 E-value=55 Score=28.12 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
+..|..++..|+.++..|..+...+.++...+|.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655555555555543
No 340
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.71 E-value=61 Score=25.50 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
+.+..+-|+...+.|...++.|.....++++....+...+..+.+++
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777777776666666666666666665543
No 341
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=40.05 E-value=1.3e+02 Score=24.01 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 120 QMMEQLRTEAQKLKQ-SNENLQEKIKELK--------AEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~-e~~~L~~ei~eLk--------~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
+-+++|+++++.|+. +...+.+.|++-. .++..-+++...+...|..|+.+|....+
T Consensus 9 ~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~v 74 (158)
T 2p4v_A 9 EGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKI 74 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCee
Confidence 446778888888854 4555555554443 34444567777888899999999987543
No 342
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=39.63 E-value=57 Score=30.01 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhcC
Q 026646 88 DRLNERFLELGSML 101 (235)
Q Consensus 88 ekINd~F~eLrslL 101 (235)
+.|-+.|..++.-|
T Consensus 143 ~~~~~~~~~~~~e~ 156 (373)
T 3hhm_B 143 DRLYEEYTRTSQEI 156 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHH
Confidence 44555555444433
No 343
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=39.58 E-value=52 Score=20.72 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
|+...++|-.+.+.|+.....|+..
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~k 29 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444433
No 344
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.25 E-value=40 Score=31.40 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRL 160 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~L 160 (235)
|++++.++..+.+....|+.+.+.|..+...+++|...|
T Consensus 27 i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 27 IQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666677777777777666666555444
No 345
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=39.18 E-value=12 Score=23.75 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
..|..|+..++.|+.+++.+++++..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444
No 346
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.95 E-value=1.6e+02 Score=28.04 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026646 144 KELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 144 ~eLk~EknELr~E~~~Lk~e~e 165 (235)
+.|+...++|+...+.|+..+.
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544443
No 347
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=38.72 E-value=1.2e+02 Score=23.70 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhH
Q 026646 123 EQLRTEAQKLKQSNE 137 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~ 137 (235)
.+|+.++.++..+..
T Consensus 16 ~ql~~qL~k~~~~r~ 30 (112)
T 1x79_B 16 RQANDQLEKTMKDKQ 30 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 348
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=38.56 E-value=1.1e+02 Score=26.02 Aligned_cols=40 Identities=20% Similarity=0.435 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDE 156 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E 156 (235)
-+..+++-|+.+|.+...|+.+. ..++.+|..+.+.++.-
T Consensus 27 ~~~~~l~~L~~iQ~e~~~l~~e~---~~ev~~lE~ky~~~~~P 66 (225)
T 2e50_A 27 EQQEAIEHIDEVQNEIDRLNEQA---SEEILKVEQKYNKLRQP 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCH
Confidence 47788888888888888777644 44566666666666543
No 349
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.47 E-value=24 Score=33.02 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=9.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRL 160 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~L 160 (235)
|+.+...|+.++..++.|.+.++.+...+
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~ 65 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDN 65 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444443333333
No 350
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=38.32 E-value=44 Score=24.07 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026646 152 ELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~qlk 172 (235)
+|+.+...|..+++.|+.+++
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 351
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=38.31 E-value=1.1e+02 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 149 EKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~le~qlk 172 (235)
+..+|+.++..||-+|.++-.+-+
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL~~~~ 68 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMIIEYR 68 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566677777777777666655433
No 352
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.26 E-value=85 Score=20.72 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 026646 124 QLRTEAQKLKQ 134 (235)
Q Consensus 124 ~Lq~qv~~L~~ 134 (235)
-|+.+.+.|++
T Consensus 4 alkselqalkk 14 (48)
T 1g6u_A 4 ALKSELQALKK 14 (48)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555554
No 353
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=38.18 E-value=82 Score=24.30 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 151 NELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
-+|......-+-||+.|.+++.-+
T Consensus 66 YDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 66 YDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHh
Confidence 333333333445555565665555
No 354
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=38.18 E-value=1.1e+02 Score=26.72 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 026646 129 AQKLKQSNENLQEKIKELKA------EKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 129 v~~L~~e~~~L~~ei~eLk~------EknELr~E~~~Lk~e~e~le~ql 171 (235)
++.++.....|..+|..|+. ....|++|..+..++..-.|.||
T Consensus 106 vqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL 154 (234)
T 3plt_A 106 VQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444455566777766653 33455555554444444444443
No 355
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=38.16 E-value=46 Score=25.66 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=9.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 026646 129 AQKLKQSNENLQEKIKELKAEKN 151 (235)
Q Consensus 129 v~~L~~e~~~L~~ei~eLk~Ekn 151 (235)
.+++.++++.|+++|..|..|.+
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 356
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=37.82 E-value=1.4e+02 Score=22.99 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026646 150 KNELRDEKQRLKADKEKLEQQ 170 (235)
Q Consensus 150 knELr~E~~~Lk~e~e~le~q 170 (235)
..||+.|...|+.++.....|
T Consensus 69 v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 69 IKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555433
No 357
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=37.52 E-value=1.4e+02 Score=26.31 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
|+++-..++.|+.....+.+++..|.++--+|.++...++..+
T Consensus 179 I~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Ri 221 (242)
T 3uux_B 179 IRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRL 221 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433334444444443333
No 358
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=37.51 E-value=1.2e+02 Score=22.12 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
|-+|.++|......-+++|..|..=..-||......-.-..+||.+.
T Consensus 1 lIkQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~ 47 (74)
T 2q6q_A 1 AVQQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN 47 (74)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 359
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=37.40 E-value=24 Score=25.90 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 113 TILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 113 sIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
.-+.+|+.||+.++.+-+.--....+..+-++..+.
T Consensus 5 ~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~ 40 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQK 40 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 457899999999998755433344444444444443
No 360
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.37 E-value=18 Score=24.66 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQ 140 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~ 140 (235)
.||.+|+++++.|+..+..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 778888888877777666553
No 361
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.26 E-value=1.4e+02 Score=22.82 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 146 LKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
|+..++.+..++..|.+.+..++.+..
T Consensus 73 lq~~l~~~~~~~~~l~~~~~~l~~Ek~ 99 (107)
T 2no2_A 73 LQGSLETSAQSEANWAAEFAELEKERD 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 362
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=37.10 E-value=61 Score=24.23 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKA----EKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~----EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.+.++|+.-++.|+..+..|.+-|.-.+. |+..-+.-...++.+++.|+.++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666666555544221 112223334566666667666654
No 363
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=36.61 E-value=39 Score=20.17 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=16.2
Q ss_pred CCchhhHHHHHHHHHHHHHHH
Q 026646 108 KTDKATILSDAVQMMEQLRTE 128 (235)
Q Consensus 108 K~dKasIL~dAIeYIk~Lq~q 128 (235)
|+.+..+|-+|.+||.+..++
T Consensus 1 ~~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 356788999999999866553
No 364
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=35.15 E-value=1.3e+02 Score=23.06 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
+..++|.+.+..|+++.=.|+.++..-.-|+++|+.
T Consensus 49 e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~ 84 (107)
T 1ytz_T 49 DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRN 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Confidence 566777777777777766666665555555555553
No 365
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.04 E-value=57 Score=24.94 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 026646 158 QRLKADKEK 166 (235)
Q Consensus 158 ~~Lk~e~e~ 166 (235)
..|..|+++
T Consensus 81 ~~L~~eLe~ 89 (96)
T 1t3j_A 81 VQLESELEN 89 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344443
No 366
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=34.95 E-value=19 Score=29.63 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=12.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
++..+..|..++..|+.+...|.++++.+.+....|...|.
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLe 125 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLD 125 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTTC------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333444444444444444444444444333344443333
No 367
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.92 E-value=89 Score=21.19 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
|..-+.+|+..+..|+..|..|...+..|.
T Consensus 22 lenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655554443
No 368
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=34.90 E-value=1.4e+02 Score=22.22 Aligned_cols=15 Identities=13% Similarity=0.353 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQS 135 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e 135 (235)
-+..|+..++.|.+.
T Consensus 44 ~l~el~e~l~DL~~S 58 (95)
T 2c5k_T 44 ILKDVEETIVDLDRS 58 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 369
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=34.20 E-value=1.7e+02 Score=27.49 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 132 LKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 132 L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
+.++..+++.-|......+.+|+.......+.|..|++.+..+
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l 131 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 131 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555565566677788887777777777787777764
No 370
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=34.16 E-value=1.9e+02 Score=23.50 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+..|++-|..|+.++.+++... ..+|..++. ....+...|+++++.|+..|..
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~---n~eI~~ik~---~~~~~~~~l~~~i~~l~~~l~~ 70 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQM---NEAIDAAKA---RASQKSAPLLARRKELEDGVAT 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888887777766533 334444432 3444556677777777777665
No 371
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.14 E-value=1.5e+02 Score=22.49 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 026646 160 LKADKEKLEQQVK 172 (235)
Q Consensus 160 Lk~e~e~le~qlk 172 (235)
|+..-.-|+.+|.
T Consensus 76 LRnKA~~L~~eLe 88 (96)
T 1t3j_A 76 LRNKAVQLESELE 88 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 372
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.53 E-value=1.7e+02 Score=22.80 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
.+..+.|...+.+|+.+...|+..++.|+..+..+.
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777777777777776643
No 373
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.33 E-value=1.3e+02 Score=25.65 Aligned_cols=7 Identities=71% Similarity=1.260 Sum_probs=4.2
Q ss_pred CCccCCC
Q 026646 226 QDHVLRP 232 (235)
Q Consensus 226 ~d~~l~p 232 (235)
.|-+|||
T Consensus 200 ~dRVLRp 206 (213)
T 4ani_A 200 KDRVLRP 206 (213)
T ss_dssp TTSCCSC
T ss_pred CCEEeec
Confidence 4566665
No 374
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=33.17 E-value=1.4e+02 Score=22.71 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026646 118 AVQMMEQLRTEAQKLKQSN 136 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~ 136 (235)
...-.++|+.++.+|+.++
T Consensus 21 ~a~~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFN 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666554
No 375
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=32.82 E-value=74 Score=19.56 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 026646 155 DEKQRLKADKEKLEQ 169 (235)
Q Consensus 155 ~E~~~Lk~e~e~le~ 169 (235)
.|+-.|..|.-.|++
T Consensus 15 aenyqleqevaqleh 29 (33)
T 1fmh_A 15 AENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 334444444444443
No 376
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=32.11 E-value=1.5e+02 Score=21.84 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 026646 116 SDAVQMMEQLRTEAQKL-----KQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAP 177 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L-----~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~ 177 (235)
-+....|+.|+..+.++ +.-.++|..=+.+-+.+..+.+.+...-...++.+..+|..-+..
T Consensus 8 lk~L~niR~LRA~arel~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~ 74 (86)
T 3nr7_A 8 LKILNNIRTLRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGID 74 (86)
T ss_dssp HHHHTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35556677888776544 344444444444444444333434444444455555555554443
No 377
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=31.88 E-value=2.2e+02 Score=23.71 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 026646 138 NLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSGFLP 182 (235)
Q Consensus 138 ~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~~~p 182 (235)
.+..-+++|..+...+|.+-...+.+.+++..+|++.. .+.++|
T Consensus 221 ~~~p~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 264 (265)
T 2q12_A 221 QLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVAS-DPLYVP 264 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-C-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccCCCC
Confidence 44444555666666666666666666666666666432 244444
No 378
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=31.83 E-value=2.2e+02 Score=23.48 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHHHHHHHHHH-HH
Q 026646 89 RLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKI--------KELKAEKNELRDEK-QR 159 (235)
Q Consensus 89 kINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei--------~eLk~EknELr~E~-~~ 159 (235)
.|+..+..|+.-|.|- ...=..-|..++-.|-.+|+..++.|+.......+++ ++++....-+-+|. ..
T Consensus 70 ~l~~~~~~l~~qL~P~--~~e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~k 147 (191)
T 1nfn_A 70 ELKAYKSELEEQLTPV--AEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKR 147 (191)
T ss_dssp HHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444556677666655 2223445666666666677777777776655444432 23333333222222 35
Q ss_pred HHHHHHHHHHHHHh
Q 026646 160 LKADKEKLEQQVKA 173 (235)
Q Consensus 160 Lk~e~e~le~qlk~ 173 (235)
+....+.|+.+|.-
T Consensus 148 l~~~~eeLr~~l~P 161 (191)
T 1nfn_A 148 LLRDADDLQKRLAV 161 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHH
Confidence 55666666666654
No 379
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=31.81 E-value=88 Score=24.11 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
-+..++|.+.+..|+++.=.|+.++..-.-|+++|+.
T Consensus 48 ~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~ 84 (106)
T 1j1d_B 48 REKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRN 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHH
Confidence 3566677777777777665666555555555555553
No 380
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=31.27 E-value=2e+02 Score=26.60 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 026646 156 EKQRLKADKEKLE 168 (235)
Q Consensus 156 E~~~Lk~e~e~le 168 (235)
|...|..++.+|.
T Consensus 228 E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 228 EEEGLNTELSRLS 240 (517)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444443
No 381
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.27 E-value=1e+02 Score=22.53 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
|++||.++..+..++.+|.-++..++.....+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56788888888888887777766655544443
No 382
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=31.17 E-value=94 Score=30.38 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 130 QKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 130 ~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
..|+.+.+.++.+++.++.+.++++...+.++.++.+.-
T Consensus 355 ~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~ 393 (695)
T 2j69_A 355 PLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTR 393 (695)
T ss_dssp HHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666655555555555443
No 383
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=30.84 E-value=97 Score=23.03 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=5.2
Q ss_pred HHHHHHhHHHHHHH
Q 026646 130 QKLKQSNENLQEKI 143 (235)
Q Consensus 130 ~~L~~e~~~L~~ei 143 (235)
..|+..|..|.-.|
T Consensus 59 k~le~~n~~l~~ri 72 (83)
T 4ath_A 59 KKLEHANRHLLLRV 72 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHH
Confidence 33333333333333
No 384
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.61 E-value=1.7e+02 Score=21.87 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 026646 160 LKADKEKL 167 (235)
Q Consensus 160 Lk~e~e~l 167 (235)
|..+|++.
T Consensus 63 le~~i~rh 70 (84)
T 1gmj_A 63 LQKEIERH 70 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 385
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.55 E-value=33 Score=32.11 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026646 152 ELRDEKQRLKADKEKLEQQVKAMSAPS 178 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~qlk~~~~~p 178 (235)
+++++...|+.+.++.+.+++.+.+.|
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~l~~~~ 102 (437)
T 4b4t_L 76 QRRQNIRDLEKLYDKTENDIKALQSIG 102 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334444445555566666666665544
No 386
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=30.24 E-value=52 Score=24.63 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Q 026646 121 MMEQLRTEAQKLKQSNENLQEK-------------IKELKAEKNELRDEKQRLKA 162 (235)
Q Consensus 121 YIk~Lq~qv~~L~~e~~~L~~e-------------i~eLk~EknELr~E~~~Lk~ 162 (235)
-|..|+.+..+|+.+...+..+ |+.| .++||++|=-+.|-.
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~L-h~YNeiKD~gq~L~g 62 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLL-HTYNEIRDIALGMIG 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 3566777777777666555431 2223 566777766555533
No 387
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=30.21 E-value=3.1e+02 Score=24.83 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 152 ELRDEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
++..+...+-..++.|+.++..++.|-|
T Consensus 80 e~~~~Rd~~a~~k~~Le~~ierLs~pgg 107 (302)
T 3ibp_A 80 EAIVERDEVGARKNAVDEEIERLSQPGG 107 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4555556667778888899998887654
No 388
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=29.83 E-value=1.1e+02 Score=30.92 Aligned_cols=19 Identities=5% Similarity=0.191 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026646 156 EKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 156 E~~~Lk~e~e~le~qlk~~ 174 (235)
....++.++++++.+|..+
T Consensus 843 ~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 843 RLKENLEQAERIREALSQI 861 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3345566666666666543
No 389
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=29.63 E-value=2e+02 Score=22.33 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
|+..-..+...|+++.+=.++..++..++.+|-.....+..|..+||.-+
T Consensus 57 lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 57 LQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44455566666666666666666666677777666666777777666543
No 390
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=29.53 E-value=1.7e+02 Score=27.09 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRD 155 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~ 155 (235)
+..+|+.|+.||.+..+|+.+. ..++..|+++.+.++.
T Consensus 51 v~~rI~aLk~lQ~E~~~le~ef---~eEv~~LE~KY~kl~q 88 (359)
T 3fs3_A 51 QKETLKKLKLYQKEYYDYESKF---EYELFLLRQKYHDLYG 88 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 4567888888888888877654 3455556666655554
No 391
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.46 E-value=84 Score=22.47 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=10.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 129 AQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 129 v~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
+.+|+.++..-..+|++|+.+.+.++
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444434444444444444443
No 392
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=29.12 E-value=1.5e+02 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=7.4
Q ss_pred HhHHHHHHHHHHHHHH
Q 026646 135 SNENLQEKIKELKAEK 150 (235)
Q Consensus 135 e~~~L~~ei~eLk~Ek 150 (235)
+..+|+.++..|+.|.
T Consensus 24 ~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 24 KYLAKVKERHELKEFN 39 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444454444
No 393
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=29.01 E-value=1.1e+02 Score=24.44 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 026646 158 QRLKADKEKLEQQVKA 173 (235)
Q Consensus 158 ~~Lk~e~e~le~qlk~ 173 (235)
...++|.++.+..|+.
T Consensus 106 a~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 106 AAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 394
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=28.72 E-value=1.6e+02 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
.+++.+++++.++..+|..+|+.+.
T Consensus 5 ~~i~~ei~e~~~~i~~l~~~Ik~il 29 (129)
T 3f6n_A 5 NQIQKEVSEILSDQKSMKADIKAIL 29 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 395
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=28.63 E-value=1.6e+02 Score=20.95 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+-.++|+.++.+|+.++.....+=++ +.--.|+.....|..|++.+..+|.+
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeF--AKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNY--AKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455566665555544322111111 11123333444445555555555543
No 396
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=28.46 E-value=1.2e+02 Score=26.61 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026646 116 SDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELR 154 (235)
Q Consensus 116 ~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr 154 (235)
.++=+.|..|..+++++.+..+.....|+.++....||.
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444444444444443443
No 397
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.44 E-value=1.7e+02 Score=21.10 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 026646 159 RLKADKEKLEQQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~le~qlk~ 173 (235)
.|+.-+..+.+.|..
T Consensus 71 ~l~~~L~~i~~~l~~ 85 (103)
T 4i0x_B 71 ELVEGLSQMEEAART 85 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 398
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=28.35 E-value=48 Score=25.18 Aligned_cols=61 Identities=10% Similarity=0.192 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
++|++.+.++..+|+++.++|+..+.++. -+.++....+.-.+-...|..=.+.+.+-+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~ 62 (184)
T 3p01_A 2 NAVVQRAAETYDLLKQRTEELRRANAQMS-LLTVLVQVTQASNSLEAILTPIATAFAESFAV 62 (184)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 46778888899999999999988776543 34444444443333334455445555555543
No 399
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=28.28 E-value=95 Score=25.61 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 142 KIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 142 ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+++.|+.|+..+++....-+.++..|..|..+
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~va 37 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELILQQIA 37 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444444444444333
No 400
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=28.14 E-value=1.7e+02 Score=27.92 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=25.1
Q ss_pred HHHHHHH---HHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 026646 81 CREKLRR---DRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 81 ~~ERrRR---ekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L 139 (235)
.-|..|| +.|.+.+.-|++-+-.. .+...-++......+++.+......|....+.|
T Consensus 49 ~~e~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 108 (526)
T 2de0_X 49 DHEILRRRIENGAKELWFFLQSELKKL--KNLEGNELQRHADEFLLDLGHHERSIMTDLYYL 108 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 34444444444444222 122233444444444444444444444443333
No 401
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=27.58 E-value=2.4e+02 Score=22.76 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHHHHHHHHHH-H
Q 026646 88 DRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKI--------KELKAEKNELRDEK-Q 158 (235)
Q Consensus 88 ekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei--------~eLk~EknELr~E~-~ 158 (235)
+.++..+..|+.-|.|. ...-...+..++-..=.+|+..+++++...+...+++ ++++.....+-+|. .
T Consensus 69 d~l~~~~~~l~~~L~P~--t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~ 146 (165)
T 1gs9_A 69 KELKAYKSELEEQLTPV--AEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRK 146 (165)
T ss_dssp HHHHHHHHHHTTSCCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666677777665 2222444444444444445555566655544333332 34444444333332 3
Q ss_pred HHHHHHHHHHHHHH
Q 026646 159 RLKADKEKLEQQVK 172 (235)
Q Consensus 159 ~Lk~e~e~le~qlk 172 (235)
.+..+.+.|+.+|.
T Consensus 147 ~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 147 RLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhh
Confidence 45555555655554
No 402
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=27.19 E-value=15 Score=35.53 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 026646 163 DKEKLEQQVK 172 (235)
Q Consensus 163 e~e~le~qlk 172 (235)
+++.|++++.
T Consensus 406 e~~~l~~~~~ 415 (575)
T 2i1j_A 406 ERQKLEDEIR 415 (575)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 403
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=27.07 E-value=2.1e+02 Score=21.71 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC
Q 026646 154 RDEKQRLKADKEKLEQQVKAMSAP 177 (235)
Q Consensus 154 r~E~~~Lk~e~e~le~qlk~~~~~ 177 (235)
-||...|-.|+...|.+|+.++-|
T Consensus 58 NDEINkL~rEK~~WE~rI~eLGGp 81 (92)
T 1x4t_A 58 NDEINKLLREKGHWEVRIKELGGP 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444456777777777777654
No 404
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=26.98 E-value=2.8e+02 Score=23.26 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 82 REKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSN 136 (235)
Q Consensus 82 ~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~ 136 (235)
.|+.|+..-..++.+=+- ||.+-..++-.. --++.++|.+.+..|+.+.
T Consensus 33 ~E~e~k~eEKkkiLaER~--kPLnid~Lse~~----L~e~ckELh~~I~~LEeEK 81 (180)
T 1j1e_C 33 REAEERRGEKGRALSTRA--QPLELAGLGFAE----LQDLARQLHARVDKVDEER 81 (180)
T ss_dssp HHHHHHHHHHHHHHHHHS--CCCCGGGCCHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444 544222222222 2234444444444444443
No 405
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.82 E-value=2.9e+02 Score=23.88 Aligned_cols=31 Identities=6% Similarity=0.355 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026646 126 RTEAQKLKQSNENLQEKIKELKAEKNELRDE 156 (235)
Q Consensus 126 q~qv~~L~~e~~~L~~ei~eLk~EknELr~E 156 (235)
.+.+++...++..+...+.+.+....++|+.
T Consensus 184 ~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 184 SDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 406
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=26.56 E-value=2.4e+02 Score=22.28 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELK--------AEKNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk--------~EknELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
+-+++|+++++....+.....+.|++-. .++...+++...+...+..|+.+|....+
T Consensus 10 ~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~v 74 (156)
T 2f23_A 10 AGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVI 74 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3456677666664444444444444332 24556677778888999999999998544
No 407
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=26.51 E-value=1.7e+02 Score=20.45 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026646 152 ELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~qlk 172 (235)
+++..-..+..-++.+..+|+
T Consensus 59 ~~~~~~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 59 ELSPKITEFAQLLEDINQQLL 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444
No 408
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=26.40 E-value=2.7e+02 Score=22.93 Aligned_cols=30 Identities=7% Similarity=0.169 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKI 143 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei 143 (235)
+..++|.-+..-+..++.|+....+++.++
T Consensus 63 ~ye~ai~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 63 LYEASIKKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555554
No 409
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=26.33 E-value=2.6e+02 Score=22.66 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 026646 140 QEKIKELKAEKN 151 (235)
Q Consensus 140 ~~ei~eLk~Ekn 151 (235)
..+|..++.+.+
T Consensus 60 ~kdi~~a~~eL~ 71 (141)
T 3okq_A 60 SKDLENAQADVL 71 (141)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 410
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.29 E-value=1.3e+02 Score=19.21 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 026646 155 DEKQRLKADKEKL 167 (235)
Q Consensus 155 ~E~~~Lk~e~e~l 167 (235)
+|..+||.+.+.|
T Consensus 21 eeIa~Lk~eN~eL 33 (37)
T 1t6f_A 21 NEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHH
Confidence 3344444444433
No 411
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=26.29 E-value=93 Score=19.56 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 139 LQEKIKELKAEKNELRDEKQRLKADKEK 166 (235)
Q Consensus 139 L~~ei~eLk~EknELr~E~~~Lk~e~e~ 166 (235)
++.+=..|-.++..|+..+..|+..++.
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555666666555555555443
No 412
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=25.99 E-value=1.6e+02 Score=23.74 Aligned_cols=22 Identities=9% Similarity=0.412 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
|.+++.+|+.+-.++..+|+..
T Consensus 26 Ldr~~~kle~~ekk~~~~Ikka 47 (179)
T 2gd5_A 26 VDRQIRDIQREEEKVKRSVKDA 47 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 413
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.73 E-value=1.1e+02 Score=24.68 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNEL 153 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknEL 153 (235)
..|++++.+++.....+..++.+|..+..++
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVL 33 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666655555555555444443333
No 414
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.64 E-value=1.9e+02 Score=20.81 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=4.0
Q ss_pred HHHHHHHHHhH
Q 026646 127 TEAQKLKQSNE 137 (235)
Q Consensus 127 ~qv~~L~~e~~ 137 (235)
.++..|+.+..
T Consensus 29 ~~Ie~LE~~i~ 39 (89)
T 2lw1_A 29 QLLEDLEAKLE 39 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 415
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=25.52 E-value=94 Score=27.77 Aligned_cols=43 Identities=9% Similarity=0.358 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
.+|..++..++.+..++...++++... ...|..++.|+...+|
T Consensus 219 ~~l~n~I~~V~n~~~q~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 219 GEMNSKIKGVENKMKQIEDKIEEILSK-------IYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhcc
Confidence 344444444444444444444444444 4444444444444333
No 416
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=25.18 E-value=1.3e+02 Score=26.21 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHH--------HHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILS--------DAVQMME--QLRTEAQKLKQSNENLQEKIKELKAEKNE 152 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~--------dAIeYIk--~Lq~qv~~L~~e~~~L~~ei~eLk~EknE 152 (235)
-.+|.+.-..|..+.-.. ..+-.+++ =.++|+. .--+++.+|-+...+..++|++||.+..+
T Consensus 52 aqhikdicsdlnqifnke----dpryevvqagasaahdfdvryldihkhgreiarllekiqkyfQ~IEtlK~ql~n 123 (294)
T 3caz_A 52 AQHIKDICSDLNQIFNKE----DPRYEVVQAGASAAHDFDVRYLDIHKHGREIARLLEKIQKYRQEIEEIKKEYKE 123 (294)
T ss_dssp HHHHHHHHHHHTSSCCSC----CTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc----CcchHHHHcccccccccchhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777777777766432 12222222 1355543 22335666666666666667666665543
No 417
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=24.71 E-value=2.3e+02 Score=21.57 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 174 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~ 174 (235)
|..+...|+...+.=...-++|..++.+|..-...|+.+.+.-++.|.-+
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el 51 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLREL 51 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 418
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.38 E-value=1.5e+02 Score=28.44 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026646 152 ELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.|+.-...+.+.|.+|++.+..
T Consensus 167 ~l~~~~~~~~~~i~~l~~~~~~ 188 (461)
T 3ghg_B 167 VLRSILENLRSKIQKLESDVSA 188 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555566666655554
No 419
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.24 E-value=90 Score=24.15 Aligned_cols=6 Identities=17% Similarity=0.312 Sum_probs=2.8
Q ss_pred CCCCCC
Q 026646 177 PSGFLP 182 (235)
Q Consensus 177 ~p~~~p 182 (235)
|+||..
T Consensus 50 p~gw~~ 55 (182)
T 3kqg_A 50 SQGWKY 55 (182)
T ss_dssp TTTCEE
T ss_pred CCCCEE
Confidence 455443
No 420
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=24.10 E-value=1.8e+02 Score=26.18 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 026646 159 RLKADKEKLEQQVK 172 (235)
Q Consensus 159 ~Lk~e~e~le~qlk 172 (235)
.|+.+|+.++.+++
T Consensus 180 ~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 180 ADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555555
No 421
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=23.97 E-value=2.8e+02 Score=22.14 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 111 KATILSDAVQMMEQLRTEAQ----------------------KLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 111 KasIL~dAIeYIk~Lq~qv~----------------------~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le 168 (235)
|.-+|..|.+-+++=+.+.+ +|++...+|-+.|..|..|+-+|......-+.||+.|.
T Consensus 20 k~lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~ 99 (133)
T 1j1d_C 20 KTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLT 99 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHH
Q ss_pred HHH
Q 026646 169 QQV 171 (235)
Q Consensus 169 ~ql 171 (235)
+++
T Consensus 100 ~rV 102 (133)
T 1j1d_C 100 QKI 102 (133)
T ss_dssp HHH
T ss_pred HHH
No 422
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.80 E-value=2.3e+02 Score=21.23 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 149 EKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
+.+|+......|+.++.+++..|..
T Consensus 63 ~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 63 QIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555443
No 423
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=23.44 E-value=44 Score=26.26 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKI 143 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei 143 (235)
.+|..++++|+-||..|+.++
T Consensus 11 EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 424
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=23.43 E-value=2.5e+02 Score=23.10 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 026646 160 LKADKEKLE 168 (235)
Q Consensus 160 Lk~e~e~le 168 (235)
|+.-++.++
T Consensus 105 l~~~~~~~~ 113 (278)
T 1r8e_A 105 ISLVKKRMK 113 (278)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 425
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=23.37 E-value=1.9e+02 Score=21.86 Aligned_cols=9 Identities=0% Similarity=-0.127 Sum_probs=4.4
Q ss_pred HHHHHHhcC
Q 026646 93 RFLELGSML 101 (235)
Q Consensus 93 ~F~eLrslL 101 (235)
.|..+...|
T Consensus 21 ~l~k~~~ql 29 (97)
T 1hs7_A 21 VLEKECTKI 29 (97)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 444455555
No 426
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=23.25 E-value=1.3e+02 Score=22.82 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEK-------------NELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~Ek-------------nELr~E~~~Lk~e~e~le~qlk 172 (235)
-+.+|+.||+.++.+-+.--....++.+-++..+.+. .++-++...|-..-..|=..+.
T Consensus 6 ~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn 77 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFG 77 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 3679999999999886553334444544444444433 3455555556555555555554
No 427
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=23.20 E-value=2.1e+02 Score=25.83 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNE 152 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknE 152 (235)
+.+|. .+..+.++.++++.|.-.-.+|+.+..-|+...++
T Consensus 352 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 391 (406)
T 4dyl_A 352 VQLLG-KRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEH 391 (406)
T ss_dssp GGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHh-HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 44444 55555555555555555555555554444444433
No 428
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.19 E-value=2.6e+02 Score=21.47 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAEKNE 152 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~EknE 152 (235)
|.++.-+.+.+.+.|+.++.+|+....+
T Consensus 9 ~~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 9 LLERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3334444455566666666666555543
No 429
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=22.94 E-value=2.2e+02 Score=20.59 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 129 AQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 129 v~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
++.+......|..++..++.+....-.|-+.|-.=|-+|+.+|.
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333344444444444444444333344444444555555553
No 430
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=22.92 E-value=2.3e+02 Score=24.30 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQSNENL 139 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~e~~~L 139 (235)
+|+.+.. +..|+++++.|+.+...|
T Consensus 67 VSL~erQ---~~~LR~r~~~Le~~L~~L 91 (252)
T 3e98_A 67 VSLVERQ---VRLLRERNIEMRHRLSQL 91 (252)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4444444 444555555555544444
No 431
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=22.84 E-value=2.5e+02 Score=21.23 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=30.9
Q ss_pred cCcCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 74 CVSGSKACREKLRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 74 ~~~~sH~~~ERrRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
+...+=..+|+=|+.=|.+--..+..+=.++ . .+ .-|++|-.++.+|-.+...++..|.+|
T Consensus 18 ~~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~----L------~E--~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 18 SECTELPKAEKWRRQIIGEISKKVAQIQNAG----L------GE--FRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----S------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhCCC----C------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566788888876665433333333222 0 01 134455555555555555555555443
No 432
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.83 E-value=1.1e+02 Score=25.92 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 120 QMMEQLRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 120 eYIk~Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
++|...-.++.+|+.+|+.|+++.+.|..+
T Consensus 154 ELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 154 ELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566677777776666555555433
No 433
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=22.78 E-value=1.9e+02 Score=19.87 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
|..|++.+..++.-...+..+++.+..
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~ 34 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHL 34 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344455444444433333333333333
No 434
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=22.66 E-value=49 Score=25.41 Aligned_cols=9 Identities=22% Similarity=0.360 Sum_probs=0.9
Q ss_pred HHHHHhcCC
Q 026646 94 FLELGSMLE 102 (235)
Q Consensus 94 F~eLrslLP 102 (235)
|..|..-|-
T Consensus 19 i~~L~~~L~ 27 (96)
T 3fx0_A 19 LEDLKQQLQ 27 (96)
T ss_dssp -------CC
T ss_pred HHHHHHHHH
Confidence 344555444
No 435
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=22.45 E-value=3.7e+02 Score=23.34 Aligned_cols=79 Identities=11% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSN-ENLQEKIKELKAEKNELRDEK-QRLKADK 164 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~-~~L~~ei~eLk~EknELr~E~-~~Lk~e~ 164 (235)
|.+|+.-+.+|+.-|-|. ...=+.-|-.+ |..|+.++.-+-.+. ..+...+++|+....-+.+|. ..+....
T Consensus 17 r~~l~~~~eel~~~L~P~--~~~l~~~l~~~----le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~ 90 (273)
T 3s84_A 17 KEEIGKELEELRARLLPH--ANEVSQKIGDN----LRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENA 90 (273)
T ss_dssp HHHHHHHHHHHHHHHGGG--HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHH
Q 026646 165 EKLEQQV 171 (235)
Q Consensus 165 e~le~ql 171 (235)
+.|+.+|
T Consensus 91 eeLr~~L 97 (273)
T 3s84_A 91 DSLQASL 97 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 436
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=22.38 E-value=44 Score=23.01 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 026646 119 VQMMEQLRTEAQKLKQSNENLQ 140 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~~~L~ 140 (235)
-.||..|+.++..|+..+..|.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888888887777666553
No 437
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.32 E-value=1.3e+02 Score=27.12 Aligned_cols=11 Identities=0% Similarity=-0.206 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q 026646 117 DAVQMMEQLRT 127 (235)
Q Consensus 117 dAIeYIk~Lq~ 127 (235)
...+|.+.|..
T Consensus 220 ~~~~yf~~l~~ 230 (426)
T 1lrz_A 220 RDDKFYYNRLK 230 (426)
T ss_dssp -CHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 46777777754
No 438
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.15 E-value=1.7e+02 Score=28.59 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026646 141 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 141 ~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~ 173 (235)
.++.+++.+...++.+...|+....+++..+..
T Consensus 359 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~ 391 (695)
T 2j69_A 359 QDVNELKKRIDSVEPEFNKLTGIRDEFQKEIIN 391 (695)
T ss_dssp SCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555544
No 439
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=22.09 E-value=1.4e+02 Score=21.22 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026646 115 LSDAVQMMEQLRTEAQKLKQSNENLQEKIKELK 147 (235)
Q Consensus 115 L~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk 147 (235)
+.+|+.||++++.+-+.--....+..+-++..+
T Consensus 4 ~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k 36 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSDPATYNGFLEIMKEFK 36 (77)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 579999999999876543334444444444443
No 440
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.08 E-value=74 Score=29.71 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026646 150 KNELRDEKQRLKADKEKLE 168 (235)
Q Consensus 150 knELr~E~~~Lk~e~e~le 168 (235)
..+|+.+...++.++++|+
T Consensus 81 ~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 81 IRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3334444444555555554
No 441
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=21.84 E-value=3.6e+02 Score=22.63 Aligned_cols=36 Identities=8% Similarity=0.284 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026646 140 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 140 ~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~ 175 (235)
-+.|..|..|+-+|......-+-||+.|.+++.-+.
T Consensus 71 h~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 71 HARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 333444444555555555555667777777776653
No 442
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=21.78 E-value=2.7e+02 Score=22.01 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 026646 163 DKEKLEQQV 171 (235)
Q Consensus 163 e~e~le~ql 171 (235)
.++.|++..
T Consensus 100 ~Lk~l~~~~ 108 (180)
T 1s94_A 100 KLKTIELNI 108 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 443
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=21.63 E-value=1e+02 Score=23.65 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=2.3
Q ss_pred HHHHHHHHHHhcC
Q 026646 89 RLNERFLELGSML 101 (235)
Q Consensus 89 kINd~F~eLrslL 101 (235)
.|+..-..|...-
T Consensus 18 ei~~L~~~L~~AE 30 (96)
T 3fx0_A 18 QLEDLKQQLQQAE 30 (96)
T ss_dssp --------CCSST
T ss_pred HHHHHHHHHHHHH
Confidence 4555444554444
No 444
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=21.54 E-value=84 Score=30.37 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKELKA 148 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eLk~ 148 (235)
-++|+.+++.|+.+...+..+|..++.
T Consensus 43 ~r~~~~~~e~l~~~~N~~sk~ig~~~~ 69 (522)
T 3vbb_A 43 WRRCRFRADNLNKLKNLCSKTIGEKMK 69 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666655555555554433
No 445
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=21.50 E-value=1.5e+02 Score=21.81 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 026646 158 QRLKADKEKLE 168 (235)
Q Consensus 158 ~~Lk~e~e~le 168 (235)
+.|..++|++.
T Consensus 43 QsLQvqLE~IR 53 (79)
T 1tu3_F 43 QTLQVQLERIR 53 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 446
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.50 E-value=1.8e+02 Score=19.10 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 026646 140 QEKIKELKAEK 150 (235)
Q Consensus 140 ~~ei~eLk~Ek 150 (235)
-++|..+-.|+
T Consensus 8 ~qkI~kVdrEI 18 (42)
T 2l5g_B 8 IQNMDRVDREI 18 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 447
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=21.46 E-value=3.6e+02 Score=26.29 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENLQEKI 143 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei 143 (235)
.+.++++..+.-.+..+.....+.++...++..+
T Consensus 374 slqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~ 407 (602)
T 1cii_A 374 SARNNLSARTNEQKHANDALNALLKEKENIRNQL 407 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444443333
No 448
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.44 E-value=3.1e+02 Score=21.77 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=23.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 128 EAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 172 (235)
Q Consensus 128 qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk 172 (235)
++..++.+...|..+.+.+..|..|+.+..-.--...-.+-|+|.
T Consensus 51 ~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ 95 (123)
T 4aj5_K 51 ELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQ 95 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666666666666666655333333333334443
No 449
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=21.30 E-value=1.6e+02 Score=21.64 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
+.+|++-+++|..|=.++++.-.+...|-.+..++
T Consensus 3 ~~yledyld~ie~LP~El~r~~~~irelD~~~~~~ 37 (104)
T 4afl_A 3 GMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDL 37 (104)
T ss_dssp CHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666555544444444433333
No 450
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=21.26 E-value=3.5e+02 Score=22.39 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 112 ATILSDAVQMMEQLRTEAQKLKQSNENLQ----EKIKELKAEKNELRDEKQRLKADKEKLEQQV 171 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~~L~~e~~~L~----~ei~eLk~EknELr~E~~~Lk~e~e~le~ql 171 (235)
.+|++--.+|.+-|..-+.=++.-...|. .+...+=..+.+-|.|...+|.++.+++--.
T Consensus 39 ~AlIda~teY~kal~tLiSL~~~y~a~lgkl~~~eeD~~WqvIi~~R~E~~d~k~e~~rles~w 102 (162)
T 1g73_A 39 YALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTW 102 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777766666555544332222 3344455556667777777777777776543
No 451
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=21.17 E-value=3.4e+02 Score=22.10 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHH
Q 026646 85 LRRDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMM 122 (235)
Q Consensus 85 rRRekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYI 122 (235)
.|-+.|+++...|..++. .+-.-|.++..+.
T Consensus 94 ~r~~~l~~~W~~L~~~~~-------~R~~~L~~~l~~~ 124 (250)
T 1quu_A 94 DRCQKICDQWDRLGTLTQ-------KRREALERMEKLL 124 (250)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 456777777777777764 3344455555544
No 452
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=21.14 E-value=3.8e+02 Score=22.71 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=29.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026646 110 DKATILSDAVQMMEQLRTEAQKLKQSNENLQEKIKE 145 (235)
Q Consensus 110 dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~e 145 (235)
...+|-.+-.+.|..|+..+..|+++.+.|+++++.
T Consensus 9 ~~~~i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 9 PTNLIKQKMDELIKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888889999999999999999999888887643
No 453
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=21.08 E-value=2.1e+02 Score=19.71 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026646 153 LRDEKQRLKADKEKLEQQVKA 173 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~le~qlk~ 173 (235)
.+..-..|..-+..+...|..
T Consensus 57 w~~~~~~~~~~L~~i~~~l~~ 77 (94)
T 3fav_B 57 WDATATELNNALQNLARTISE 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 454
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=20.86 E-value=2.8e+02 Score=21.04 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026646 114 ILSDAVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 179 (235)
Q Consensus 114 IL~dAIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e~le~qlk~~~~~p~ 179 (235)
+.++-..+|+.|..+-.-=.+...+.+-+++-+.. |. ..|..|++||+.-..-+...|.
T Consensus 23 ~~ed~~~FlkHL~~eH~LddrS~AQcrvQ~qvVq~----LE---~QL~kEreRLqAM~~HL~~K~~ 81 (93)
T 4i1l_A 23 VFEEPEEFLKHCQADHLLDEKGKAQCLLQREVVQS----LE---QQLELEKEKLGAMQAHLAGKMA 81 (93)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHTSSCC--
T ss_pred cccCHHHHHHHhhcccCCCcchHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHccCcC
Confidence 77888899999987765444444444444322211 11 2356788888888777766543
No 455
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=20.80 E-value=2.3e+02 Score=22.10 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 026646 125 LRTEAQKLKQSNENLQEKIKELKAE 149 (235)
Q Consensus 125 Lq~qv~~L~~e~~~L~~ei~eLk~E 149 (235)
|.++..+|+.+...|+++++.|++.
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444443
No 456
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=20.59 E-value=4.5e+02 Score=23.32 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHH-
Q 026646 87 RDRLNERFLELGSMLEPGRPPKTDKATILSDAVQMMEQLRTEAQKLKQSNENLQEK--------IKELKAEKNELRDEK- 157 (235)
Q Consensus 87 RekINd~F~eLrslLP~~~~~K~dKasIL~dAIeYIk~Lq~qv~~L~~e~~~L~~e--------i~eLk~EknELr~E~- 157 (235)
.+.|+..+..|+.-|.|. ...-..-|..++-..=.+|+..++.++...+...++ +++|+....-+.+|.
T Consensus 76 ~~el~~y~~~l~~qL~P~--~~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~ 153 (307)
T 2l7b_A 76 MKELKAYKSELEEQLTPV--AEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLR 153 (307)
T ss_dssp HHHHHHHHHHHTTCCCSC--CSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcch--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556788888766 222233344444444445555566655554443333 244555554444444
Q ss_pred HHHHHHHHHHHHHHHh
Q 026646 158 QRLKADKEKLEQQVKA 173 (235)
Q Consensus 158 ~~Lk~e~e~le~qlk~ 173 (235)
.+++...+.|+.+|.-
T Consensus 154 ~~~~~~~eeLr~~L~p 169 (307)
T 2l7b_A 154 KRLLRDADDLQKRLAV 169 (307)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHhh
Confidence 4666666777776654
No 457
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=20.55 E-value=49 Score=25.28 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026646 119 VQMMEQLRTEAQKLKQSN 136 (235)
Q Consensus 119 IeYIk~Lq~qv~~L~~e~ 136 (235)
..-.++|+.++.+|..++
T Consensus 29 ~~~~~~lk~E~~~lk~E~ 46 (94)
T 3vlc_E 29 SKKYLAKVKERHELKEFN 46 (94)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666655554
No 458
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.53 E-value=2.1e+02 Score=22.38 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 123 EQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADK 164 (235)
Q Consensus 123 k~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~ 164 (235)
..-.+++.+|+.++.....+..+...+..+|......+...+
T Consensus 88 e~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=20.43 E-value=1.2e+02 Score=17.72 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026646 112 ATILSDAVQMMEQLRTEAQ 130 (235)
Q Consensus 112 asIL~dAIeYIk~Lq~qv~ 130 (235)
+|-|-+|-.|+.+|++..+
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4567788888888876543
No 460
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=20.42 E-value=2.4e+02 Score=20.04 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHhcc
Q 026646 137 ENLQEKIKELKAEKNEL--RDEK---QRLKADKEKLEQQVKAMS 175 (235)
Q Consensus 137 ~~L~~ei~eLk~EknEL--r~E~---~~Lk~e~e~le~qlk~~~ 175 (235)
.+|+.++..|+.|.+-. +||- ++|+..+++|..+|+.++
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554432 3332 366666677766666643
No 461
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.31 E-value=5.5e+02 Score=24.83 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 026646 160 LKADKEKLE 168 (235)
Q Consensus 160 Lk~e~e~le 168 (235)
|+.||..|+
T Consensus 572 ~~~ei~~l~ 580 (592)
T 1f5n_A 572 MKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 462
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=20.29 E-value=1.6e+02 Score=18.03 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 026646 122 MEQLRTEAQKLKQSNENLQEKIKEL 146 (235)
Q Consensus 122 Ik~Lq~qv~~L~~e~~~L~~ei~eL 146 (235)
+.-|+.+++.|+..|-.-.++++.|
T Consensus 3 vqalkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3446666666666665555555444
No 463
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.26 E-value=2.7e+02 Score=20.67 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026646 150 KNELRDEKQRLKADKEKLEQQVKAMSA 176 (235)
Q Consensus 150 knELr~E~~~Lk~e~e~le~qlk~~~~ 176 (235)
.+.+..|.......++.|.++|..+++
T Consensus 58 ~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 58 LGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555555666666777777776654
No 464
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=20.18 E-value=2.8e+02 Score=20.75 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026646 118 AVQMMEQLRTEAQKLKQSNENLQEKIKELKAEKNELRDEKQRLKADKE 165 (235)
Q Consensus 118 AIeYIk~Lq~qv~~L~~e~~~L~~ei~eLk~EknELr~E~~~Lk~e~e 165 (235)
-.+.+.+|+..--..-.+...|....+.|.+|+..|--.|+.|..++-
T Consensus 24 rte~lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig 71 (97)
T 1no4_A 24 RTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIG 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhc
Confidence 345555555544444444444544445555566555555555555543
Done!