Your job contains 1 sequence.
>026648
MADGYWRYSDARQPQSALPSLVSKRPRTDYDVPSGHELSSYYTRDDDRGALRGMRDTDSL
GASYDRYLRSAQISSYSGGQSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGG
GRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILC
FVDFVSPAHAATAMDALQGQSNIICLSNLVVFYQIACEYISDKICVHIKFLCMHN
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026648
(235 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025232 - symbol:AT1G76940 species:3702 "Arabi... 431 1.6e-40 1
TAIR|locus:2014937 - symbol:AT1G21320 species:3702 "Arabi... 406 7.0e-38 1
UNIPROTKB|F5H357 - symbol:RBPMS "RNA-binding protein with... 117 6.7e-07 1
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 110 4.1e-06 1
DICTYBASE|DDB_G0268988 - symbol:DDB_G0268988 "RNA-binding... 125 1.5e-05 1
UNIPROTKB|H0YBU9 - symbol:RBPMS "RNA-binding protein with... 105 1.5e-05 1
UNIPROTKB|Q93062 - symbol:RBPMS "RNA-binding protein with... 117 2.5e-05 1
MGI|MGI:1334446 - symbol:Rbpms "RNA binding protein gene ... 117 2.6e-05 1
UNIPROTKB|E2R5F7 - symbol:RBPMS "Uncharacterized protein"... 117 4.0e-05 1
UNIPROTKB|B4E3T4 - symbol:RBPMS "HCG2043421, isoform CRA_... 117 4.4e-05 1
MGI|MGI:1919223 - symbol:Rbpms2 "RNA binding protein with... 114 7.5e-05 1
UNIPROTKB|F1NAP9 - symbol:RBPMS "RNA-binding protein with... 113 8.0e-05 1
UNIPROTKB|E2QU21 - symbol:RBPMS2 "Uncharacterized protein... 114 8.7e-05 1
UNIPROTKB|Q9W6I1 - symbol:RBPMS "RNA-binding protein with... 113 8.7e-05 1
UNIPROTKB|F1RX64 - symbol:RBPMS "Uncharacterized protein"... 114 8.8e-05 1
UNIPROTKB|F1MAV3 - symbol:RBPMS "Uncharacterized protein"... 114 9.4e-05 1
RGD|1561222 - symbol:Rbpms2 "RNA binding protein with mul... 111 9.6e-05 1
UNIPROTKB|F1M7J8 - symbol:Rbpms "Protein Rbpms" species:1... 110 0.00010 1
UNIPROTKB|F1NZ89 - symbol:RBPMS2 "Uncharacterized protein... 110 0.00012 1
UNIPROTKB|F1S0B2 - symbol:RBPMS2 "Uncharacterized protein... 111 0.00014 1
UNIPROTKB|Q6ZRY4 - symbol:RBPMS2 "RNA-binding protein wit... 112 0.00014 1
UNIPROTKB|F1N2U8 - symbol:RBPMS2 "Uncharacterized protein... 111 0.00017 1
UNIPROTKB|F1P2M9 - symbol:RBPMS2 "Uncharacterized protein... 110 0.00020 1
UNIPROTKB|F1M9Y9 - symbol:Rbpms "Protein Rbpms" species:1... 110 0.00020 1
ZFIN|ZDB-GENE-040426-741 - symbol:rbpms2b "RNA binding pr... 110 0.00021 1
UNIPROTKB|Q9YGP5 - symbol:rbpms "RNA-binding protein with... 107 0.00045 1
UNIPROTKB|Q10MR0 - symbol:LOC_Os03g18720 "U2 small nuclea... 109 0.00046 1
ZFIN|ZDB-GENE-040718-106 - symbol:rbpms2a "RNA binding pr... 107 0.00048 1
RGD|1307416 - symbol:Snrpa "small nuclear ribonucleoprote... 110 0.00054 1
UNIPROTKB|Q2KIR1 - symbol:SNRPA "U1 small nuclear ribonuc... 110 0.00055 1
UNIPROTKB|P09012 - symbol:SNRPA "U1 small nuclear ribonuc... 110 0.00055 1
UNIPROTKB|Q06AA4 - symbol:SNRPA "U1 small nuclear ribonuc... 110 0.00055 1
UNIPROTKB|F1M6Z8 - symbol:Snrpa "Protein Snrpa" species:1... 110 0.00056 1
MGI|MGI:1855690 - symbol:Snrpa "small nuclear ribonucleop... 110 0.00057 1
MGI|MGI:104805 - symbol:Snrpb2 "U2 small nuclear ribonucl... 107 0.00071 1
UNIPROTKB|B8AM21 - symbol:OsI_11177 "U2 small nuclear rib... 107 0.00078 1
TAIR|locus:2061976 - symbol:U1A "spliceosomal protein U1A... 107 0.00094 1
UNIPROTKB|E2R2A8 - symbol:SNRPB2 "Uncharacterized protein... 106 0.00095 1
UNIPROTKB|P08579 - symbol:SNRPB2 "U2 small nuclear ribonu... 106 0.00095 1
RGD|1310194 - symbol:Snrpb2 "small nuclear ribonucleoprot... 106 0.00095 1
>TAIR|locus:2025232 [details] [associations]
symbol:AT1G76940 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 PANTHER:PTHR10501
EMBL:BT029526 IPI:IPI00547369 RefSeq:NP_177820.2 UniGene:At.45990
ProteinModelPortal:A1A6K6 SMR:A1A6K6 PaxDb:A1A6K6 PRIDE:A1A6K6
EnsemblPlants:AT1G76940.1 GeneID:844029 KEGG:ath:AT1G76940
TAIR:At1g76940 eggNOG:NOG274612 HOGENOM:HOG000116598
InParanoid:A1A6K6 OMA:DPIVLCF PhylomeDB:A1A6K6
ProtClustDB:CLSN2680654 Genevestigator:A1A6K6 Uniprot:A1A6K6
Length = 233
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 106/214 (49%), Positives = 136/214 (63%)
Query: 1 MADGYWRYSDARQPQSALPSLVSKRPRTDYDVPS-----GHELSSYYTRDDDRGALRGMR 55
MADGYW + RQ Q P KRPR+D++ PS GH YY RD+D +
Sbjct: 1 MADGYW--NQQRQ-QHHPPGGPMKRPRSDFEAPSSTMTIGHG-GGYYPRDEDLD----VP 52
Query: 56 DTDSLGASYDRYLRSAQIS---SYSGGQSARHMSGGMPS-RPVDD--PRIVGIGGMDPGP 109
DT ++G++YDRYL+S Q S S G+S GG + + +DD R G+ +D GP
Sbjct: 53 DTRTIGSAYDRYLQSVQSGEGGSVSMGRSGGGGGGGGGNVQTIDDFMLRRGGVLPLDHGP 112
Query: 110 SAKDRALGLGG----GRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165
+ +G GR LP DAS+TL+VEGLPS+CSRREVAHIFRPFVGY+EVRLV
Sbjct: 113 NG--HTIGFDPPEPVGRRN--LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLV 168
Query: 166 SKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199
+K+S+H GDP++LCFVDF +PA AATA+ ALQG
Sbjct: 169 TKDSKHRNGDPIVLCFVDFTNPACAATALSALQG 202
>TAIR|locus:2014937 [details] [associations]
symbol:AT1G21320 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0017069 InterPro:IPR008889 Pfam:PF05678
PANTHER:PTHR10501 IPI:IPI00517769 RefSeq:NP_173554.3
UniGene:At.64837 ProteinModelPortal:F4HWF9 SMR:F4HWF9 PRIDE:F4HWF9
EnsemblPlants:AT1G21320.1 GeneID:838729 KEGG:ath:AT1G21320
OMA:QNRGFER ArrayExpress:F4HWF9 Uniprot:F4HWF9
Length = 421
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 90/187 (48%), Positives = 121/187 (64%)
Query: 28 TDYDVPSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ---ISS-----YSGG 79
T Y +PSG ++ SY ++D+DRG ++DT S+G++YDRYL+S Q + S ++G
Sbjct: 203 TPYLIPSG-DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGV 261
Query: 80 QSARHMSGGMPSRPVDDPRIVGIGGMDPG---PSAKDRALG----LGG-GRSEVPLPPDA 131
R M P + G GG P P+ +D G +G GR PLPPD
Sbjct: 262 GMVRQGGSNMMPGPSMGELMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDV 321
Query: 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAA 191
S+TL+VEGLPS+CSRREV+HIFRPFVGY+EVRLV+++S+H GDP +LCFVDF + A AA
Sbjct: 322 SNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAA 381
Query: 192 TAMDALQ 198
TA+ ALQ
Sbjct: 382 TALSALQ 388
>UNIPROTKB|F5H357 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00414709 HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945
EMBL:AC011204 EMBL:AC109329 ProteinModelPortal:F5H357 SMR:F5H357
PRIDE:F5H357 Ensembl:ENST00000538486 ArrayExpress:F5H357
Bgee:F5H357 Uniprot:F5H357
Length = 153
Score = 117 (46.2 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 33/77 (42%), Positives = 40/77 (51%)
Query: 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
SE L + TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV
Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FV 66
Query: 183 DFVSPAHAATAMDALQG 199
F S + A A +AL G
Sbjct: 67 SFDSRSEAEAAKNALNG 83
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 110 (43.8 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 30/66 (45%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F S + A A
Sbjct: 3 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVSFDSRSEAEAA 55
Query: 194 MDALQG 199
+AL G
Sbjct: 56 KNALNG 61
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 56/204 (27%), Positives = 88/204 (43%)
Query: 8 YSD--ARQPQSALP-SLVSKRPRTDYDVPSGHELSSYYTRDDDR-GALRGMRDTDSLGAS 63
Y D ++ S+ P S S P + +PS + R +D + SL +S
Sbjct: 146 YKDRTSKSSSSSPPYSSSSSSPLSSSPLPSHYYQDRKRIRSEDYYPRSSSSSSSSSLYSS 205
Query: 64 YDRYLRSAQISSYSGGQSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRS 123
DRY SY S+ S +P+ + P + P ++ + GG
Sbjct: 206 SDRYH-----DSYRSTPSSSSSSYLIPTSSI--PLSSSNYHLPPSSTSLSSSHYHGGSA- 257
Query: 124 EVPLPPDAS--------STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGD 175
LPP +S STLFV LP D + RE++ +FR G+ +RL++KE + P
Sbjct: 258 ---LPPQSSISTTGMPCSTLFVSNLPKDVTERELSILFRFMRGFVGIRLINKEGKLP--- 311
Query: 176 PLILCFVDFVSPAHAATAMDALQG 199
+CF DF+ + A++ LQG
Sbjct: 312 ---MCFCDFIDTQSSMFALEFLQG 332
>UNIPROTKB|H0YBU9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 Ensembl:ENST00000519359 Uniprot:H0YBU9
Length = 119
Score = 105 (42.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/65 (44%), Positives = 35/65 (53%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
LFV GLP D RE+ +FRPF GY E L+ S+ P G FV F S + A A
Sbjct: 2 LFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVSFDSRSEAEAAK 54
Query: 195 DALQG 199
+AL G
Sbjct: 55 NALNG 59
>UNIPROTKB|Q93062 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IDA]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0006396 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOGENOM:HOG000017369 HOVERGEN:HBG069897 EMBL:D84110
EMBL:D84107 EMBL:D84108 EMBL:D84109 EMBL:D84111 EMBL:BC003608
IPI:IPI00004045 IPI:IPI00101800 IPI:IPI00216935 IPI:IPI00216936
IPI:IPI00414709 PIR:JC6127 RefSeq:NP_001008710.1
RefSeq:NP_001008711.1 RefSeq:NP_001008712.1 RefSeq:NP_006858.1
UniGene:Hs.334587 PDB:1BNY PDBsum:1BNY ProteinModelPortal:Q93062
SMR:Q93062 IntAct:Q93062 MINT:MINT-1434067 STRING:Q93062
DMDM:13124469 PaxDb:Q93062 PRIDE:Q93062 Ensembl:ENST00000287771
Ensembl:ENST00000320203 Ensembl:ENST00000339877
Ensembl:ENST00000397323 GeneID:11030 KEGG:hsa:11030 UCSC:uc003xib.3
UCSC:uc003xic.1 UCSC:uc003xid.1 CTD:11030 GeneCards:GC08P030242
HGNC:HGNC:19097 MIM:601558 neXtProt:NX_Q93062 PharmGKB:PA134985584
eggNOG:NOG292253 OMA:PEVWGPY OrthoDB:EOG4NGGNV ChiTaRS:RBPMS
GenomeRNAi:11030 NextBio:41912 ArrayExpress:Q93062 Bgee:Q93062
CleanEx:HS_RBPMS Genevestigator:Q93062 GermOnline:ENSG00000157110
Uniprot:Q93062
Length = 196
Score = 117 (46.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 33/77 (42%), Positives = 40/77 (51%)
Query: 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
SE L + TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV
Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FV 66
Query: 183 DFVSPAHAATAMDALQG 199
F S + A A +AL G
Sbjct: 67 SFDSRSEAEAAKNALNG 83
>MGI|MGI:1334446 [details] [associations]
symbol:Rbpms "RNA binding protein gene with multiple
splicing" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1334446 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143 HOGENOM:HOG000017369
HOVERGEN:HBG069897 CTD:11030 eggNOG:NOG292253 OrthoDB:EOG4NGGNV
ChiTaRS:RBPMS EMBL:AF148511 EMBL:AK012265 EMBL:AK012586
EMBL:AK041118 EMBL:AC123616 EMBL:AC127551 EMBL:AC162523
EMBL:BC030397 IPI:IPI00122127 IPI:IPI00125806 IPI:IPI00132006
RefSeq:NP_001036139.1 RefSeq:NP_001036140.1 RefSeq:NP_062707.1
UniGene:Mm.323997 ProteinModelPortal:Q9WVB0 SMR:Q9WVB0
STRING:Q9WVB0 PaxDb:Q9WVB0 PRIDE:Q9WVB0 Ensembl:ENSMUST00000033994
Ensembl:ENSMUST00000033995 Ensembl:ENSMUST00000053251 GeneID:19663
KEGG:mmu:19663 NextBio:296958 CleanEx:MM_RBPMS
Genevestigator:Q9WVB0 GermOnline:ENSMUSG00000031586 Uniprot:Q9WVB0
Length = 197
Score = 117 (46.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 33/77 (42%), Positives = 40/77 (51%)
Query: 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
SE L + TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV
Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FV 66
Query: 183 DFVSPAHAATAMDALQG 199
F S + A A +AL G
Sbjct: 67 SFDSRSEAEAAKNALNG 83
>UNIPROTKB|E2R5F7 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=IEA] [GO:0010862 "positive regulation
of pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 CTD:11030 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AAEX03010423 EMBL:AAEX03010424
RefSeq:XP_532815.3 ProteinModelPortal:E2R5F7 PRIDE:E2R5F7
Ensembl:ENSCAFT00000010500 GeneID:475599 KEGG:cfa:475599
NextBio:20851407 Uniprot:E2R5F7
Length = 219
Score = 117 (46.2 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 33/77 (42%), Positives = 40/77 (51%)
Query: 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
SE L + TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV
Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FV 66
Query: 183 DFVSPAHAATAMDALQG 199
F S + A A +AL G
Sbjct: 67 SFDSRSEAEAAKNALNG 83
>UNIPROTKB|B4E3T4 [details] [associations]
symbol:RBPMS "HCG2043421, isoform CRA_c" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000017369 HOVERGEN:HBG069897 UniGene:Hs.334587
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 EMBL:AK304858 IPI:IPI00908913 SMR:B4E3T4
STRING:B4E3T4 Ensembl:ENST00000517860 UCSC:uc011lba.1
Uniprot:B4E3T4
Length = 224
Score = 117 (46.2 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 33/77 (42%), Positives = 40/77 (51%)
Query: 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
SE L + TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV
Sbjct: 14 SEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FV 66
Query: 183 DFVSPAHAATAMDALQG 199
F S + A A +AL G
Sbjct: 67 SFDSRSEAEAAKNALNG 83
>MGI|MGI:1919223 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919223 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204 CTD:348093
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
HSSP:P09012 OMA:KLTSRQP EMBL:AK144659 EMBL:AK156633 EMBL:BC021788
IPI:IPI00121434 RefSeq:NP_082306.2 UniGene:Mm.29148
ProteinModelPortal:Q8VC52 SMR:Q8VC52 PhosphoSite:Q8VC52
PaxDb:Q8VC52 PRIDE:Q8VC52 DNASU:71973 Ensembl:ENSMUST00000055844
GeneID:71973 KEGG:mmu:71973 UCSC:uc009qdt.1
GeneTree:ENSGT00500000044861 InParanoid:Q8VC52 NextBio:335098
Bgee:Q8VC52 CleanEx:MM_RBPMS2 Genevestigator:Q8VC52 Uniprot:Q8VC52
Length = 206
Score = 114 (45.2 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 36/81 (44%), Positives = 41/81 (50%)
Query: 119 GGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLI 178
G G PL + TLFV GLP D RE+ +FRPF GY E L+ SR P G
Sbjct: 13 GAGTGS-PLEEEVR-TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSRQPVG---- 65
Query: 179 LCFVDFVSPAHAATAMDALQG 199
FV F S A A A +AL G
Sbjct: 66 --FVIFDSRAGAEAAKNALNG 84
>UNIPROTKB|F1NAP9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AADN02016141 IPI:IPI00588016
Ensembl:ENSGALT00000016744 Uniprot:F1NAP9
Length = 196
Score = 113 (44.8 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 34/78 (43%), Positives = 40/78 (51%)
Query: 126 PLPPDASS----TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCF 181
P P DA TLFV GLP D RE+ +FRPF GY E L+ S+ P G F
Sbjct: 13 PRPADALPLQVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------F 65
Query: 182 VDFVSPAHAATAMDALQG 199
V F S + A A +AL G
Sbjct: 66 VSFDSRSEAEAAKNALNG 83
>UNIPROTKB|E2QU21 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:348093
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AAEX03016208
RefSeq:XP_853385.2 Ensembl:ENSCAFT00000027080 GeneID:610746
KEGG:cfa:610746 NextBio:20896295 Uniprot:E2QU21
Length = 214
Score = 114 (45.2 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 37/92 (40%), Positives = 42/92 (45%)
Query: 108 GPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167
GP G G G + TLFV GLP D RE+ +FRPF GY E L+
Sbjct: 11 GPGT-GTGTGTGTGSGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKL 68
Query: 168 ESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199
SR P G FV F S A A A +AL G
Sbjct: 69 TSRQPVG------FVIFDSRAGAEAAKNALNG 94
>UNIPROTKB|Q9W6I1 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0010862 "positive
regulation of pathway-restricted SMAD protein phosphorylation"
evidence=ISS] [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
eggNOG:NOG255204 GO:GO:0008143 EMBL:AF129933 IPI:IPI00591826
RefSeq:NP_990200.1 UniGene:Gga.2695 ProteinModelPortal:Q9W6I1
GeneID:395678 KEGG:gga:395678 CTD:348093 HOGENOM:HOG000017369
HOVERGEN:HBG069897 InParanoid:Q9W6I1 OrthoDB:EOG42RD8G
NextBio:20815750 Uniprot:Q9W6I1
Length = 200
Score = 113 (44.8 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 37/88 (42%), Positives = 43/88 (48%)
Query: 112 KDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171
KD GGG E + TLFV GLP D RE+ +FRPF GY E L+ S+
Sbjct: 6 KDTEHTNGGGNVE-----EEVRTLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSKQ 59
Query: 172 PGGDPLILCFVDFVSPAHAATAMDALQG 199
P G FV F S A A A +AL G
Sbjct: 60 PVG------FVTFDSRAGAEAAKNALNG 81
>UNIPROTKB|F1RX64 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:CU914373 EMBL:FP236445
Ensembl:ENSSSCT00000017254 Uniprot:F1RX64
Length = 215
Score = 114 (45.2 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 32/77 (41%), Positives = 40/77 (51%)
Query: 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
+E L + TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV
Sbjct: 14 NEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FV 66
Query: 183 DFVSPAHAATAMDALQG 199
F S + A A +AL G
Sbjct: 67 SFDSRSEAEAAKNALNG 83
>UNIPROTKB|F1MAV3 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:DAAA02060452 IPI:IPI00722097
UniGene:Bt.106824 Ensembl:ENSBTAT00000047899 Uniprot:F1MAV3
Length = 219
Score = 114 (45.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 32/77 (41%), Positives = 40/77 (51%)
Query: 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
+E L + TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV
Sbjct: 14 NEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FV 66
Query: 183 DFVSPAHAATAMDALQG 199
F S + A A +AL G
Sbjct: 67 SFDSRSEAEAAKNALNG 83
>RGD|1561222 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1561222 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:KLTSRQP GeneTree:ENSGT00500000044861
IPI:IPI00766399 Ensembl:ENSRNOT00000021337 UCSC:RGD:1561222
ArrayExpress:F1M9N3 Uniprot:F1M9N3
Length = 181
Score = 111 (44.1 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/66 (48%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ SR P G FV F S A A A
Sbjct: 3 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSRQPVG------FVIFDSRAGAEAA 55
Query: 194 MDALQG 199
+AL G
Sbjct: 56 KNALNG 61
>UNIPROTKB|F1M7J8 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00767399
Ensembl:ENSRNOT00000046138 ArrayExpress:F1M7J8 Uniprot:F1M7J8
Length = 175
Score = 110 (43.8 bits), Expect = 0.00010, P = 0.00010
Identities = 30/66 (45%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F S + A A
Sbjct: 3 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVSFDSRSEAEAA 55
Query: 194 MDALQG 199
+AL G
Sbjct: 56 KNALNG 61
>UNIPROTKB|F1NZ89 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 EMBL:AADN02051088 IPI:IPI00819063
Ensembl:ENSGALT00000003715 Uniprot:F1NZ89
Length = 180
Score = 110 (43.8 bits), Expect = 0.00012, P = 0.00012
Identities = 31/66 (46%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F S A A A
Sbjct: 3 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDSRAGAEAA 55
Query: 194 MDALQG 199
+AL G
Sbjct: 56 KNALNG 61
>UNIPROTKB|F1S0B2 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:CU633631
Ensembl:ENSSSCT00000005024 Uniprot:F1S0B2
Length = 195
Score = 111 (44.1 bits), Expect = 0.00014, P = 0.00014
Identities = 32/66 (48%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ SR P G FV F S A A A
Sbjct: 17 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSRQPVG------FVIFDSRAGAEAA 69
Query: 194 MDALQG 199
+AL G
Sbjct: 70 KNALNG 75
>UNIPROTKB|Q6ZRY4 [details] [associations]
symbol:RBPMS2 "RNA-binding protein with multiple splicing
2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG255204 CTD:348093 HOGENOM:HOG000017369 HOVERGEN:HBG069897
OrthoDB:EOG42RD8G EMBL:AY369207 EMBL:AK127873 IPI:IPI00238688
RefSeq:NP_919248.1 UniGene:Hs.436518 HSSP:P09012
ProteinModelPortal:Q6ZRY4 SMR:Q6ZRY4 STRING:Q6ZRY4
PhosphoSite:Q6ZRY4 DMDM:74762401 PaxDb:Q6ZRY4 PRIDE:Q6ZRY4
DNASU:348093 Ensembl:ENST00000300069 GeneID:348093 KEGG:hsa:348093
UCSC:uc002anq.3 GeneCards:GC15M065032 HGNC:HGNC:19098
neXtProt:NX_Q6ZRY4 PharmGKB:PA134871904 InParanoid:Q6ZRY4
OMA:KLTSRQP PhylomeDB:Q6ZRY4 ChiTaRS:RBPMS2 GenomeRNAi:348093
NextBio:99336 ArrayExpress:Q6ZRY4 Bgee:Q6ZRY4 CleanEx:HS_RBPMS2
Genevestigator:Q6ZRY4 Uniprot:Q6ZRY4
Length = 209
Score = 112 (44.5 bits), Expect = 0.00014, P = 0.00014
Identities = 34/83 (40%), Positives = 40/83 (48%)
Query: 117 GLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDP 176
G G G + TLFV GLP D RE+ +FRPF GY E L+ +R P G
Sbjct: 15 GTGSGAGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTARQPVG-- 71
Query: 177 LILCFVDFVSPAHAATAMDALQG 199
FV F S A A A +AL G
Sbjct: 72 ----FVIFDSRAGAEAAKNALNG 90
>UNIPROTKB|F1N2U8 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:DAAA02028733 IPI:IPI00688079
Ensembl:ENSBTAT00000014659 Uniprot:F1N2U8
Length = 203
Score = 111 (44.1 bits), Expect = 0.00017, P = 0.00017
Identities = 32/66 (48%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ SR P G FV F S A A A
Sbjct: 26 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSRQPVG------FVIFDSRAGAEAA 78
Query: 194 MDALQG 199
+AL G
Sbjct: 79 KNALNG 84
>UNIPROTKB|F1P2M9 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00591826
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AADN02051088
Ensembl:ENSGALT00000040332 Uniprot:F1P2M9
Length = 198
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 31/66 (46%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F S A A A
Sbjct: 21 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDSRAGAEAA 73
Query: 194 MDALQG 199
+AL G
Sbjct: 74 KNALNG 79
>UNIPROTKB|F1M9Y9 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0010862
"positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143
GeneTree:ENSGT00500000044861 IPI:IPI00364663
Ensembl:ENSRNOT00000017883 ArrayExpress:F1M9Y9 Uniprot:F1M9Y9
Length = 198
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 30/66 (45%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F S + A A
Sbjct: 3 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVSFDSRSEAEAA 55
Query: 194 MDALQG 199
+AL G
Sbjct: 56 KNALNG 61
>ZFIN|ZDB-GENE-040426-741 [details] [associations]
symbol:rbpms2b "RNA binding protein with multiple
splicing 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-741 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
GeneTree:ENSGT00500000044861 EMBL:BX663612 EMBL:CR354581
EMBL:BC048876 EMBL:BC066414 EMBL:AB080736 IPI:IPI00498043
RefSeq:NP_956553.1 UniGene:Dr.81683 STRING:Q7ZUL7
Ensembl:ENSDART00000006619 GeneID:393229 KEGG:dre:393229 CTD:393229
OMA:TDIKPRE NextBio:20814293 Uniprot:Q7ZUL7
Length = 200
Score = 110 (43.8 bits), Expect = 0.00021, P = 0.00021
Identities = 30/66 (45%), Positives = 37/66 (56%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP+D RE+ +FRPF GY E L+ S+ P G FV F S + A A
Sbjct: 21 TLFVSGLPTDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDSRSGAEAA 73
Query: 194 MDALQG 199
+AL G
Sbjct: 74 KNALNG 79
>UNIPROTKB|Q9YGP5 [details] [associations]
symbol:rbpms "RNA-binding protein with multiple splicing"
species:8355 "Xenopus laevis" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=ISS]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOVERGEN:HBG069897 CTD:11030 EMBL:AF107889
EMBL:BC097507 RefSeq:NP_001081864.1 UniGene:Xl.449
ProteinModelPortal:Q9YGP5 GeneID:398092 KEGG:xla:398092
Uniprot:Q9YGP5
Length = 196
Score = 107 (42.7 bits), Expect = 0.00045, P = 0.00045
Identities = 30/66 (45%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F + A A A
Sbjct: 21 TLFVSGLPIDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDNRAGAEAA 73
Query: 194 MDALQG 199
+AL G
Sbjct: 74 KNALNG 79
>UNIPROTKB|Q10MR0 [details] [associations]
symbol:LOC_Os03g18720 "U2 small nuclear ribonucleoprotein
B''" species:39947 "Oryza sativa Japonica Group" [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0015030 "Cajal body" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
EMBL:DP000009 EMBL:AP008209 GO:GO:0015030 GO:GO:0000398
EMBL:CM000140 GO:GO:0017069 GO:GO:0005686 eggNOG:NOG317159
PANTHER:PTHR10501 HOGENOM:HOG000217519 ProtClustDB:CLSN2683617
KO:K11094 OMA:DIACATQ EMBL:AK103337 RefSeq:NP_001049846.1
UniGene:Os.75636 ProteinModelPortal:Q10MR0 STRING:Q10MR0
PRIDE:Q10MR0 EnsemblPlants:LOC_Os03g18720.1 GeneID:4332557
KEGG:dosa:Os03t0298800-01 KEGG:osa:4332557 Gramene:Q10MR0
Uniprot:Q10MR0
Length = 232
Score = 109 (43.4 bits), Expect = 0.00046, P = 0.00046
Identities = 41/160 (25%), Positives = 77/160 (48%)
Query: 50 ALRGMRDTDSLGASYD-RYL--RSAQISSYSGGQSARHMSGGMPSRPVDDPRIVGIGGMD 106
A RG+++ D G +Y RS +++ G + + + + R
Sbjct: 68 AFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRRAE-EAQQ 126
Query: 107 PGPSAKDRALGLG------GGRS-EVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGY 159
GP+A ++ G G G S E P PP+ + LF++ LP++ + + +F+ + G+
Sbjct: 127 SGPNAAAQSNGTGYQASRLGKTSQEPPAPPN--NILFIQNLPAETTSMMLQILFQQYPGF 184
Query: 160 KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199
+EVR++ E++ PG + FV++ + + AM ALQG
Sbjct: 185 REVRMI--EAK-PG-----IAFVEYEDDSQSMVAMQALQG 216
>ZFIN|ZDB-GENE-040718-106 [details] [associations]
symbol:rbpms2a "RNA binding protein with multiple
splicing 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040718-106 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:BX296538
EMBL:CU570688 EMBL:BC076171 EMBL:BC152178 IPI:IPI00486507
RefSeq:NP_001002409.1 UniGene:Dr.82744 STRING:Q6DH13
Ensembl:ENSDART00000067514 GeneID:436682 KEGG:dre:436682 CTD:436682
InParanoid:Q6DH13 NextBio:20831125 Uniprot:Q6DH13
Length = 199
Score = 107 (42.7 bits), Expect = 0.00048, P = 0.00048
Identities = 30/66 (45%), Positives = 36/66 (54%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F S + A A
Sbjct: 21 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDSRSGAEAA 73
Query: 194 MDALQG 199
+AL G
Sbjct: 74 KNALNG 79
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 110 (43.8 bits), Expect = 0.00054, P = 0.00054
Identities = 42/123 (34%), Positives = 57/123 (46%)
Query: 84 HMSGGMPSRPVDDPRIVGIGGMDPG---PSAKD-RALGLGGGRSEVPL---PPDASSTLF 136
HM G P P P ++ G+ PG P A + L G PL PP+ LF
Sbjct: 155 HMPGQPPYMP--PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPN--HILF 210
Query: 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196
+ LP + + ++ +F F G+KEVRLV RH + FV+F + A A DA
Sbjct: 211 LTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNEVQAGAARDA 262
Query: 197 LQG 199
LQG
Sbjct: 263 LQG 265
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 110 (43.8 bits), Expect = 0.00055, P = 0.00055
Identities = 42/123 (34%), Positives = 57/123 (46%)
Query: 84 HMSGGMPSRPVDDPRIVGIGGMDPG---PSAKD-RALGLGGGRSEVPL---PPDASSTLF 136
HM G P P P ++ G+ PG P A + L G PL PP+ LF
Sbjct: 156 HMPGQPPYMP--PPGMIPPPGLAPGQLPPGAMPPQQLMPGQMPPAQPLSENPPN--HILF 211
Query: 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196
+ LP + + ++ +F F G+KEVRLV RH + FV+F + A A DA
Sbjct: 212 LTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNEVQAGAARDA 263
Query: 197 LQG 199
LQG
Sbjct: 264 LQG 266
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 110 (43.8 bits), Expect = 0.00055, P = 0.00055
Identities = 42/123 (34%), Positives = 57/123 (46%)
Query: 84 HMSGGMPSRPVDDPRIVGIGGMDPG---PSAKD-RALGLGGGRSEVPL---PPDASSTLF 136
HM G P P P ++ G+ PG P A + L G PL PP+ LF
Sbjct: 156 HMPGQPPYMP--PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPN--HILF 211
Query: 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196
+ LP + + ++ +F F G+KEVRLV RH + FV+F + A A DA
Sbjct: 212 LTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNEVQAGAARDA 263
Query: 197 LQG 199
LQG
Sbjct: 264 LQG 266
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 110 (43.8 bits), Expect = 0.00055, P = 0.00055
Identities = 42/123 (34%), Positives = 57/123 (46%)
Query: 84 HMSGGMPSRPVDDPRIVGIGGMDPG---PSAKD-RALGLGGGRSEVPL---PPDASSTLF 136
HM G P P P ++ G+ PG P A + L G PL PP+ LF
Sbjct: 156 HMPGQPPYMP--PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPN--HILF 211
Query: 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196
+ LP + + ++ +F F G+KEVRLV RH + FV+F + A A DA
Sbjct: 212 LTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNEVQAGAARDA 263
Query: 197 LQG 199
LQG
Sbjct: 264 LQG 266
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 110 (43.8 bits), Expect = 0.00056, P = 0.00056
Identities = 42/123 (34%), Positives = 57/123 (46%)
Query: 84 HMSGGMPSRPVDDPRIVGIGGMDPG---PSAKD-RALGLGGGRSEVPL---PPDASSTLF 136
HM G P P P ++ G+ PG P A + L G PL PP+ LF
Sbjct: 159 HMPGQPPYMP--PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPN--HILF 214
Query: 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196
+ LP + + ++ +F F G+KEVRLV RH + FV+F + A A DA
Sbjct: 215 LTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNEVQAGAARDA 266
Query: 197 LQG 199
LQG
Sbjct: 267 LQG 269
>MGI|MGI:1855690 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1855690
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11091 HOVERGEN:HBG000895 CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W
EMBL:L15447 EMBL:BC003229 EMBL:BC094006 EMBL:BC096648
IPI:IPI00122350 PIR:S42113 RefSeq:NP_001040102.1 RefSeq:NP_056597.3
UniGene:Mm.386890 ProteinModelPortal:Q62189 SMR:Q62189
STRING:Q62189 PhosphoSite:Q62189 PaxDb:Q62189 PRIDE:Q62189
Ensembl:ENSMUST00000080356 Ensembl:ENSMUST00000122202
Ensembl:ENSMUST00000163311 GeneID:53607 KEGG:mmu:53607
InParanoid:Q62189 NextBio:310305 Bgee:Q62189 CleanEx:MM_SNRPA
Genevestigator:Q62189 GermOnline:ENSMUSG00000061479 Uniprot:Q62189
Length = 287
Score = 110 (43.8 bits), Expect = 0.00057, P = 0.00057
Identities = 42/123 (34%), Positives = 57/123 (46%)
Query: 84 HMSGGMPSRPVDDPRIVGIGGMDPG---PSAKD-RALGLGGGRSEVPL---PPDASSTLF 136
HM G P P P ++ G+ PG P A + L G PL PP+ LF
Sbjct: 161 HMPGQPPYMP--PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPN--HILF 216
Query: 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196
+ LP + + ++ +F F G+KEVRLV RH + FV+F + A A DA
Sbjct: 217 LTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNEVQAGAARDA 268
Query: 197 LQG 199
LQG
Sbjct: 269 LQG 271
>MGI|MGI:104805 [details] [associations]
symbol:Snrpb2 "U2 small nuclear ribonucleoprotein B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104805 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11094 OMA:TTANKKP CTD:6629 HOVERGEN:HBG000895 OrthoDB:EOG4H72CH
EMBL:AK005107 EMBL:AK011274 EMBL:AK012944 EMBL:AK013871
EMBL:BC026794 IPI:IPI00132576 RefSeq:NP_067310.1 UniGene:Mm.1323
ProteinModelPortal:Q9CQI7 SMR:Q9CQI7 STRING:Q9CQI7
PhosphoSite:Q9CQI7 PaxDb:Q9CQI7 PRIDE:Q9CQI7
Ensembl:ENSMUST00000008477 GeneID:20639 KEGG:mmu:20639
InParanoid:Q9CQI7 ChiTaRS:SNRPB2 NextBio:299043 Bgee:Q9CQI7
CleanEx:MM_SNRPB2 Genevestigator:Q9CQI7
GermOnline:ENSMUSG00000008333 Uniprot:Q9CQI7
Length = 225
Score = 107 (42.7 bits), Expect = 0.00071, P = 0.00071
Identities = 33/96 (34%), Positives = 46/96 (47%)
Query: 107 PGPSAKDRA--LGLGGGRSEVP-LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR 163
PG + A G +VP PP+ LF+ LP + + ++ +F F G+KEVR
Sbjct: 124 PGQGTPNAANTQGTAAPNPQVPDYPPNY--ILFLNNLPEETNEMMLSMLFNQFPGFKEVR 181
Query: 164 LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199
LV RH + FV+F + A A DALQG
Sbjct: 182 LVP--GRHD------IAFVEFENDGQAGAARDALQG 209
>UNIPROTKB|B8AM21 [details] [associations]
symbol:OsI_11177 "U2 small nuclear ribonucleoprotein B''"
species:39946 "Oryza sativa Indica Group" [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0015030
"Cajal body" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030
GO:GO:0000398 GO:GO:0017069 GO:GO:0005686 EMBL:CM000128
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519
ProteinModelPortal:B8AM21 STRING:B8AM21 Gramene:B8AM21
Uniprot:B8AM21
Length = 232
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 114 RALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPG 173
+A LG E P PP+ + LF++ LP++ + + +F+ + G++EVR++ E++ PG
Sbjct: 141 QASRLGKTSQEPPAPPN--NILFIQNLPAETTSMMLQILFQQYPGFREVRMI--EAK-PG 195
Query: 174 GDPLILCFVDFVSPAHAATAMDALQG 199
+ FV++ + + AM ALQG
Sbjct: 196 -----IAFVEYEDDSQSMVAMQALQG 216
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 107 (42.7 bits), Expect = 0.00094, P = 0.00094
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 101 GIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYK 160
G+ G P S G+ E P PP+ + LFV+ LP + + + +F + G+K
Sbjct: 147 GVYGAAPPLSQVPYPGGMKPNMPEAPAPPN--NILFVQNLPHETTPMVLQMLFCQYQGFK 204
Query: 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199
EVR++ E++ PG + FV+F + AM LQG
Sbjct: 205 EVRMI--EAK-PG-----IAFVEFADEMQSTVAMQGLQG 235
>UNIPROTKB|E2R2A8 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:DIACATQ CTD:6629 EMBL:AAEX03013775
RefSeq:NP_001238897.1 UniGene:Cfa.10214 Ensembl:ENSCAFT00000039015
GeneID:477148 KEGG:cfa:477148 NextBio:20852679 Uniprot:E2R2A8
Length = 225
Score = 106 (42.4 bits), Expect = 0.00095, P = 0.00095
Identities = 32/95 (33%), Positives = 45/95 (47%)
Query: 107 PGPSAKDRALGLGGGRSEVPLPPD--ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRL 164
PG + A G + P PD + LF+ LP + + ++ +F F G+KEVRL
Sbjct: 124 PGQGTPNAA-NTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRL 182
Query: 165 VSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199
V RH + FV+F + A A DALQG
Sbjct: 183 VP--GRHD------IAFVEFENDGQAGAARDALQG 209
>UNIPROTKB|P08579 [details] [associations]
symbol:SNRPB2 "U2 small nuclear ribonucleoprotein B''"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471133
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 GO:GO:0005686
eggNOG:NOG317159 PANTHER:PTHR10501 EMBL:AL034428
HOGENOM:HOG000217519 PDB:1A9N PDBsum:1A9N KO:K11094 OMA:TTANKKP
EMBL:M15841 EMBL:AK313004 EMBL:BC018022 EMBL:BC036737
IPI:IPI00029267 PIR:A25910 RefSeq:NP_003083.1 RefSeq:NP_937863.1
UniGene:Hs.280378 ProteinModelPortal:P08579 SMR:P08579
IntAct:P08579 MINT:MINT-156501 STRING:P08579 PhosphoSite:P08579
DMDM:134095 PaxDb:P08579 PeptideAtlas:P08579 PRIDE:P08579
DNASU:6629 Ensembl:ENST00000246071 Ensembl:ENST00000377943
GeneID:6629 KEGG:hsa:6629 UCSC:uc002wph.2 CTD:6629
GeneCards:GC20P016658 HGNC:HGNC:11155 MIM:603520 neXtProt:NX_P08579
PharmGKB:PA35996 HOVERGEN:HBG000895 InParanoid:P08579
OrthoDB:EOG4H72CH PhylomeDB:P08579 EvolutionaryTrace:P08579
GenomeRNAi:6629 NextBio:25823 Bgee:P08579 CleanEx:HS_SNRPB2
Genevestigator:P08579 GermOnline:ENSG00000125870 Uniprot:P08579
Length = 225
Score = 106 (42.4 bits), Expect = 0.00095, P = 0.00095
Identities = 32/95 (33%), Positives = 45/95 (47%)
Query: 107 PGPSAKDRALGLGGGRSEVPLPPD--ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRL 164
PG + A G + P PD + LF+ LP + + ++ +F F G+KEVRL
Sbjct: 124 PGQGTPNSA-NTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRL 182
Query: 165 VSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199
V RH + FV+F + A A DALQG
Sbjct: 183 VP--GRHD------IAFVEFENDGQAGAARDALQG 209
>RGD|1310194 [details] [associations]
symbol:Snrpb2 "small nuclear ribonucleoprotein polypeptide B''"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310194 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 EMBL:CH474026
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11094 OMA:DIACATQ CTD:6629
HOVERGEN:HBG000895 OrthoDB:EOG4H72CH EMBL:BC168760 IPI:IPI00213414
RefSeq:NP_001102062.1 UniGene:Rn.7712 STRING:B5DEQ4
Ensembl:ENSRNOT00000006900 GeneID:362223 KEGG:rno:362223
UCSC:RGD:1310194 NextBio:679082 Genevestigator:B5DEQ4
Uniprot:B5DEQ4
Length = 225
Score = 106 (42.4 bits), Expect = 0.00095, P = 0.00095
Identities = 32/95 (33%), Positives = 45/95 (47%)
Query: 107 PGPSAKDRALGLGGGRSEVPLPPD--ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRL 164
PG + A G + P PD + LF+ LP + + ++ +F F G+KEVRL
Sbjct: 124 PGQGTPNSA-NTQGNAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRL 182
Query: 165 VSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199
V RH + FV+F + A A DALQG
Sbjct: 183 VP--GRHD------IAFVEFENDGQAGAARDALQG 209
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 235 235 0.00088 113 3 11 22 0.41 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 591 (63 KB)
Total size of DFA: 183 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.39u 0.11s 22.50t Elapsed: 00:00:01
Total cpu time: 22.40u 0.11s 22.51t Elapsed: 00:00:01
Start: Fri May 10 23:48:35 2013 End: Fri May 10 23:48:36 2013