Query 026648
Match_columns 235
No_of_seqs 241 out of 1243
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 10:46:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.7 8.7E-16 1.9E-20 126.2 10.5 77 132-212 34-111 (144)
2 TIGR01659 sex-lethal sex-letha 99.6 8.3E-15 1.8E-19 136.1 15.7 72 131-206 106-178 (346)
3 PF00076 RRM_1: RNA recognitio 99.6 1.7E-15 3.8E-20 106.1 7.1 67 135-205 1-67 (70)
4 KOG0148 Apoptosis-promoting RN 99.6 1.1E-15 2.4E-20 136.4 7.2 155 33-204 69-227 (321)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1E-14 2.2E-19 132.8 11.5 75 132-210 269-344 (352)
6 TIGR01648 hnRNP-R-Q heterogene 99.6 5.2E-15 1.1E-19 145.2 10.1 97 128-228 54-150 (578)
7 TIGR01659 sex-lethal sex-letha 99.6 1.6E-15 3.5E-20 140.8 5.5 155 33-214 114-273 (346)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.1E-14 2.5E-19 132.4 10.9 71 132-206 3-74 (352)
9 KOG0117 Heterogeneous nuclear 99.5 3E-14 6.6E-19 134.0 10.5 91 130-224 81-172 (506)
10 KOG0114 Predicted RNA-binding 99.5 2.8E-14 6.1E-19 111.7 8.6 88 124-218 10-97 (124)
11 KOG0121 Nuclear cap-binding pr 99.5 1.6E-14 3.5E-19 116.8 6.0 70 131-204 35-105 (153)
12 KOG0107 Alternative splicing f 99.4 1.5E-13 3.2E-18 116.2 6.6 70 132-209 10-79 (195)
13 KOG0122 Translation initiation 99.4 8.5E-13 1.8E-17 116.4 11.4 78 132-217 189-267 (270)
14 PF14259 RRM_6: RNA recognitio 99.4 6.9E-13 1.5E-17 94.2 7.8 66 135-204 1-66 (70)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.4 1.2E-12 2.6E-17 125.0 11.4 79 130-212 293-372 (509)
16 TIGR01645 half-pint poly-U bin 99.4 4.5E-13 9.8E-18 132.2 8.6 162 34-211 115-280 (612)
17 smart00362 RRM_2 RNA recogniti 99.4 2.2E-12 4.9E-17 88.5 9.2 67 134-205 1-67 (72)
18 KOG0149 Predicted RNA-binding 99.4 1E-12 2.2E-17 115.3 6.2 78 132-214 12-90 (247)
19 KOG0125 Ataxin 2-binding prote 99.3 2.5E-12 5.4E-17 117.5 8.6 79 131-214 95-173 (376)
20 TIGR01622 SF-CC1 splicing fact 99.3 3.6E-12 7.9E-17 120.3 10.0 78 132-212 186-263 (457)
21 KOG0144 RNA-binding protein CU 99.3 6.9E-13 1.5E-17 124.6 5.0 86 132-221 124-211 (510)
22 PLN03120 nucleic acid binding 99.3 4.2E-12 9E-17 113.6 9.7 66 132-204 4-69 (260)
23 TIGR01645 half-pint poly-U bin 99.3 3E-12 6.5E-17 126.4 9.6 74 132-209 107-181 (612)
24 KOG0105 Alternative splicing f 99.3 1.1E-12 2.3E-17 112.2 5.5 74 132-211 6-79 (241)
25 TIGR01628 PABP-1234 polyadenyl 99.3 6.7E-12 1.4E-16 122.1 10.3 72 134-209 2-74 (562)
26 KOG0144 RNA-binding protein CU 99.3 4.1E-12 8.8E-17 119.4 8.3 86 131-220 33-121 (510)
27 TIGR01628 PABP-1234 polyadenyl 99.3 1.1E-11 2.5E-16 120.4 10.2 79 131-214 284-362 (562)
28 TIGR01622 SF-CC1 splicing fact 99.3 1.2E-11 2.7E-16 116.7 10.2 70 131-205 88-158 (457)
29 KOG0113 U1 small nuclear ribon 99.3 1.2E-11 2.6E-16 111.8 9.4 73 130-206 99-172 (335)
30 COG0724 RNA-binding proteins ( 99.3 2E-11 4.4E-16 102.2 9.2 71 132-206 115-186 (306)
31 PLN03121 nucleic acid binding 99.3 1.7E-11 3.8E-16 108.4 8.5 66 132-204 5-70 (243)
32 TIGR01648 hnRNP-R-Q heterogene 99.3 1.9E-11 4.1E-16 120.3 9.5 71 132-213 233-305 (578)
33 cd00590 RRM RRM (RNA recogniti 99.3 5.8E-11 1.3E-15 81.8 9.2 67 134-204 1-67 (74)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 2.5E-11 5.3E-16 116.8 9.8 64 132-204 2-67 (481)
35 smart00360 RRM RNA recognition 99.2 3.7E-11 8E-16 81.9 8.0 65 137-204 1-65 (71)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3.1E-11 6.7E-16 116.1 10.3 73 131-211 274-347 (481)
37 KOG0145 RNA-binding protein EL 99.2 3.5E-11 7.5E-16 107.6 8.5 70 132-204 41-110 (360)
38 KOG0109 RNA-binding protein LA 99.2 1.3E-11 2.7E-16 111.5 5.6 87 133-232 3-90 (346)
39 PLN03213 repressor of silencin 99.2 6.4E-11 1.4E-15 113.2 8.7 73 132-211 10-84 (759)
40 KOG0145 RNA-binding protein EL 99.2 1E-11 2.2E-16 110.9 2.4 160 30-213 37-206 (360)
41 KOG4207 Predicted splicing fac 99.2 4.1E-11 8.8E-16 104.0 6.0 76 132-211 13-89 (256)
42 KOG0117 Heterogeneous nuclear 99.2 4.9E-11 1.1E-15 112.6 6.7 69 133-212 260-328 (506)
43 KOG0131 Splicing factor 3b, su 99.1 1.2E-10 2.5E-15 99.2 5.8 79 130-212 7-86 (203)
44 KOG0146 RNA-binding protein ET 99.1 2E-10 4.3E-15 103.1 6.4 86 132-221 19-106 (371)
45 KOG0123 Polyadenylate-binding 99.1 1.6E-10 3.4E-15 108.5 5.4 132 36-206 8-144 (369)
46 KOG0126 Predicted RNA-binding 99.1 2.8E-11 6.2E-16 103.1 0.3 69 132-204 35-104 (219)
47 KOG0147 Transcriptional coacti 99.1 2.6E-10 5.6E-15 109.8 6.7 149 51-216 203-359 (549)
48 KOG0415 Predicted peptidyl pro 99.0 3.9E-10 8.4E-15 104.3 6.8 75 132-209 239-313 (479)
49 KOG0127 Nucleolar protein fibr 99.0 8.2E-10 1.8E-14 106.6 8.7 63 131-197 291-354 (678)
50 KOG0108 mRNA cleavage and poly 99.0 5.3E-10 1.1E-14 106.8 7.4 73 133-209 19-92 (435)
51 KOG0130 RNA-binding protein RB 99.0 5.8E-10 1.3E-14 91.3 5.9 76 132-211 72-148 (170)
52 KOG0148 Apoptosis-promoting RN 99.0 7.5E-10 1.6E-14 99.3 6.9 76 133-212 63-139 (321)
53 KOG0111 Cyclophilin-type pepti 99.0 2.8E-10 6.1E-15 99.7 3.9 77 131-212 9-87 (298)
54 KOG0127 Nucleolar protein fibr 99.0 1.2E-09 2.7E-14 105.4 8.4 79 132-214 117-195 (678)
55 TIGR01642 U2AF_lg U2 snRNP aux 99.0 2E-09 4.3E-14 102.9 9.0 85 131-216 408-502 (509)
56 PF13893 RRM_5: RNA recognitio 99.0 4.8E-09 1E-13 71.9 8.1 53 149-209 1-53 (56)
57 smart00361 RRM_1 RNA recogniti 98.9 5.1E-09 1.1E-13 75.4 7.1 59 146-205 2-65 (70)
58 KOG0146 RNA-binding protein ET 98.9 2.3E-09 5E-14 96.3 5.0 77 131-211 284-361 (371)
59 KOG0110 RNA-binding protein (R 98.8 4.4E-09 9.5E-14 103.9 4.8 82 132-216 613-694 (725)
60 KOG4212 RNA-binding protein hn 98.8 2.9E-08 6.3E-13 94.1 9.8 65 132-204 536-600 (608)
61 KOG0109 RNA-binding protein LA 98.8 6.2E-09 1.3E-13 94.3 4.7 70 131-211 77-146 (346)
62 KOG0132 RNA polymerase II C-te 98.8 1.4E-08 3.1E-13 101.2 7.0 72 131-211 420-491 (894)
63 KOG4206 Spliceosomal protein s 98.7 2.9E-08 6.4E-13 86.8 7.3 72 132-209 9-84 (221)
64 KOG0124 Polypyrimidine tract-b 98.7 1.3E-08 2.9E-13 94.6 4.7 68 133-204 114-182 (544)
65 KOG0110 RNA-binding protein (R 98.7 2.9E-08 6.3E-13 98.2 7.3 72 133-204 516-587 (725)
66 KOG1457 RNA binding protein (c 98.7 4.9E-08 1.1E-12 85.9 7.8 73 129-204 31-104 (284)
67 KOG4212 RNA-binding protein hn 98.7 9.6E-08 2.1E-12 90.6 9.0 69 132-204 44-113 (608)
68 KOG4205 RNA-binding protein mu 98.6 5.7E-08 1.2E-12 89.4 6.9 154 35-208 15-174 (311)
69 KOG1457 RNA binding protein (c 98.6 3.2E-08 6.9E-13 87.1 4.1 66 132-204 210-275 (284)
70 KOG4208 Nucleolar RNA-binding 98.6 1.4E-07 3E-12 81.8 7.1 69 132-204 49-119 (214)
71 KOG0153 Predicted RNA-binding 98.6 1.6E-07 3.5E-12 86.7 7.8 60 131-199 227-286 (377)
72 KOG0533 RRM motif-containing p 98.6 1.9E-07 4.2E-12 83.2 7.5 77 132-212 83-159 (243)
73 KOG0116 RasGAP SH3 binding pro 98.5 1.1E-07 2.3E-12 90.7 5.5 63 132-197 288-350 (419)
74 KOG0131 Splicing factor 3b, su 98.5 1.6E-07 3.4E-12 80.3 5.4 74 132-211 96-171 (203)
75 KOG4660 Protein Mei2, essentia 98.5 1.1E-07 2.4E-12 92.0 4.8 66 131-204 74-139 (549)
76 KOG4454 RNA binding protein (R 98.5 6E-08 1.3E-12 85.1 2.2 69 131-204 8-76 (267)
77 KOG4205 RNA-binding protein mu 98.4 1.5E-07 3.3E-12 86.6 4.2 73 131-206 5-81 (311)
78 KOG0123 Polyadenylate-binding 98.4 8.6E-07 1.9E-11 83.4 7.2 69 132-204 270-338 (369)
79 KOG4206 Spliceosomal protein s 98.4 9.2E-07 2E-11 77.5 6.6 66 131-204 145-210 (221)
80 KOG0151 Predicted splicing reg 98.3 2.3E-06 5E-11 85.2 8.4 80 132-211 174-253 (877)
81 KOG0106 Alternative splicing f 98.3 5.7E-07 1.2E-11 78.9 3.7 62 134-206 3-64 (216)
82 KOG0124 Polypyrimidine tract-b 98.3 1.1E-06 2.4E-11 82.1 5.7 68 132-204 210-279 (544)
83 KOG1548 Transcription elongati 98.2 7.3E-06 1.6E-10 76.0 8.1 79 129-211 131-217 (382)
84 KOG4209 Splicing factor RNPS1, 98.1 4.6E-06 1E-10 73.9 5.2 68 132-204 101-169 (231)
85 KOG4661 Hsp27-ERE-TATA-binding 98.1 1E-05 2.2E-10 79.3 7.6 70 132-204 405-474 (940)
86 PF04059 RRM_2: RNA recognitio 98.0 2.4E-05 5.2E-10 60.7 7.7 71 133-207 2-75 (97)
87 KOG0226 RNA-binding proteins [ 98.0 1.5E-05 3.2E-10 71.4 6.2 71 130-203 188-258 (290)
88 PF08777 RRM_3: RNA binding mo 97.9 4E-05 8.6E-10 60.1 6.2 59 133-200 2-60 (105)
89 KOG0106 Alternative splicing f 97.8 1.4E-05 3.1E-10 70.1 2.8 68 131-209 98-165 (216)
90 KOG4211 Splicing factor hnRNP- 97.7 0.00016 3.4E-09 69.8 8.0 59 132-196 10-68 (510)
91 KOG0120 Splicing factor U2AF, 97.6 6.3E-05 1.4E-09 73.2 4.5 76 130-209 287-363 (500)
92 KOG1855 Predicted RNA-binding 97.5 0.00012 2.7E-09 69.6 5.6 68 131-198 230-307 (484)
93 KOG1190 Polypyrimidine tract-b 97.5 0.00027 5.8E-09 67.1 7.7 72 132-211 297-369 (492)
94 KOG4211 Splicing factor hnRNP- 97.5 0.00038 8.3E-09 67.2 8.5 61 132-196 103-164 (510)
95 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00033 7.1E-09 48.3 4.8 52 133-194 2-53 (53)
96 KOG2314 Translation initiation 97.3 0.00032 6.9E-09 68.8 4.9 78 132-214 58-143 (698)
97 KOG4307 RNA binding protein RB 97.2 0.0026 5.5E-08 64.0 10.2 68 133-204 868-936 (944)
98 KOG0147 Transcriptional coacti 97.1 0.00015 3.2E-09 70.6 0.8 67 132-203 179-246 (549)
99 KOG1995 Conserved Zn-finger pr 97.1 0.002 4.3E-08 60.1 7.9 70 132-204 66-143 (351)
100 KOG1190 Polypyrimidine tract-b 97.0 0.0012 2.7E-08 62.7 6.1 77 132-215 414-490 (492)
101 PF11608 Limkain-b1: Limkain b 97.0 0.0024 5.2E-08 48.6 6.4 61 133-206 3-68 (90)
102 KOG0120 Splicing factor U2AF, 97.0 0.0021 4.5E-08 62.8 7.1 66 149-216 426-492 (500)
103 KOG0105 Alternative splicing f 96.9 0.0076 1.6E-07 52.3 9.1 63 132-204 115-177 (241)
104 KOG4210 Nuclear localization s 96.8 0.00083 1.8E-08 61.3 3.1 68 132-203 184-252 (285)
105 KOG0129 Predicted RNA-binding 96.8 0.0049 1.1E-07 59.9 8.3 65 131-196 258-325 (520)
106 KOG0129 Predicted RNA-binding 96.8 0.0036 7.9E-08 60.8 6.9 65 128-196 366-432 (520)
107 PF08675 RNA_bind: RNA binding 96.8 0.0091 2E-07 45.4 7.6 55 132-198 9-63 (87)
108 KOG1456 Heterogeneous nuclear 96.7 0.056 1.2E-06 51.3 13.9 75 132-214 287-362 (494)
109 KOG1365 RNA-binding protein Fu 96.7 0.01 2.2E-07 56.3 9.0 60 133-196 162-225 (508)
110 KOG1456 Heterogeneous nuclear 96.6 0.0063 1.4E-07 57.5 7.3 58 129-195 28-85 (494)
111 KOG0128 RNA-binding protein SA 96.6 0.00085 1.8E-08 68.4 1.3 69 132-204 736-804 (881)
112 KOG4676 Splicing factor, argin 96.6 0.0029 6.3E-08 59.9 4.6 79 134-214 9-87 (479)
113 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.007 1.5E-07 47.2 5.9 78 132-215 6-91 (100)
114 COG5175 MOT2 Transcriptional r 96.3 0.0069 1.5E-07 56.6 5.6 71 132-204 114-192 (480)
115 KOG0115 RNA-binding protein p5 96.0 0.006 1.3E-07 54.9 3.3 73 133-209 32-106 (275)
116 KOG1548 Transcription elongati 95.8 0.055 1.2E-06 50.7 8.7 81 131-219 264-355 (382)
117 KOG2416 Acinus (induces apopto 95.7 0.0074 1.6E-07 59.8 3.0 76 130-214 442-519 (718)
118 PF10309 DUF2414: Protein of u 95.5 0.047 1E-06 39.1 5.8 54 133-197 6-62 (62)
119 KOG0112 Large RNA-binding prot 95.3 0.0034 7.3E-08 64.5 -1.0 69 131-204 371-440 (975)
120 KOG3152 TBP-binding protein, a 95.0 0.015 3.3E-07 52.3 2.4 72 133-204 75-155 (278)
121 KOG2193 IGF-II mRNA-binding pr 94.7 0.032 7E-07 53.6 3.7 60 133-201 2-61 (584)
122 KOG1365 RNA-binding protein Fu 94.6 0.074 1.6E-06 50.6 6.0 67 132-202 280-349 (508)
123 PF07576 BRAP2: BRCA1-associat 94.4 0.54 1.2E-05 37.2 9.6 73 133-210 14-87 (110)
124 KOG0128 RNA-binding protein SA 94.4 0.0042 9.1E-08 63.5 -3.1 64 133-200 668-732 (881)
125 PF03467 Smg4_UPF3: Smg-4/UPF3 93.3 0.14 3E-06 43.6 4.7 72 131-204 6-82 (176)
126 KOG0112 Large RNA-binding prot 93.0 0.11 2.4E-06 53.8 4.1 64 132-204 455-518 (975)
127 KOG4307 RNA binding protein RB 92.8 0.1 2.3E-06 52.9 3.7 67 126-196 428-495 (944)
128 KOG4849 mRNA cleavage factor I 91.9 0.11 2.3E-06 49.1 2.3 75 132-211 80-157 (498)
129 KOG2202 U2 snRNP splicing fact 91.7 0.057 1.2E-06 48.6 0.3 65 148-216 84-151 (260)
130 KOG4574 RNA-binding protein (c 91.2 0.13 2.7E-06 53.2 2.2 67 134-209 300-366 (1007)
131 KOG2068 MOT2 transcription fac 90.6 0.16 3.5E-06 47.3 2.2 71 132-204 77-152 (327)
132 KOG2591 c-Mpl binding protein, 90.2 0.78 1.7E-05 45.7 6.6 63 131-203 174-245 (684)
133 KOG2253 U1 snRNP complex, subu 89.2 0.61 1.3E-05 47.0 5.0 60 132-203 40-99 (668)
134 PF08952 DUF1866: Domain of un 88.8 1.4 3E-05 36.8 6.1 63 128-204 25-96 (146)
135 KOG1996 mRNA splicing factor [ 88.3 1.3 2.9E-05 41.1 6.2 66 146-214 300-365 (378)
136 KOG4660 Protein Mei2, essentia 87.6 0.74 1.6E-05 45.5 4.4 69 132-204 361-458 (549)
137 PF11767 SET_assoc: Histone ly 87.2 4 8.7E-05 29.5 7.0 53 143-207 11-63 (66)
138 KOG0804 Cytoplasmic Zn-finger 86.3 1.9 4.1E-05 41.9 6.3 74 132-210 74-148 (493)
139 PF15023 DUF4523: Protein of u 84.9 1.5 3.3E-05 36.7 4.3 59 132-200 86-148 (166)
140 KOG4210 Nuclear localization s 82.3 1.2 2.5E-05 40.8 3.0 70 131-204 87-157 (285)
141 KOG4285 Mitotic phosphoprotein 82.0 3.1 6.8E-05 38.7 5.6 64 133-207 198-261 (350)
142 PF04847 Calcipressin: Calcipr 74.9 6.4 0.00014 33.8 5.1 53 145-206 8-62 (184)
143 KOG2318 Uncharacterized conser 71.3 14 0.0003 37.2 7.0 74 131-204 173-295 (650)
144 KOG0226 RNA-binding proteins [ 69.9 0.56 1.2E-05 42.6 -2.6 70 26-99 187-262 (290)
145 PF03468 XS: XS domain; Inter 65.9 2.8 6.1E-05 33.4 0.9 50 134-189 10-68 (116)
146 COG0724 RNA-binding proteins ( 63.1 14 0.00029 30.5 4.6 67 130-199 223-289 (306)
147 KOG2295 C2H2 Zn-finger protein 58.2 1.5 3.3E-05 43.6 -2.2 69 133-205 232-301 (648)
148 KOG4676 Splicing factor, argin 57.7 2.3 5E-05 40.8 -1.1 64 132-203 151-214 (479)
149 KOG2891 Surface glycoprotein [ 56.5 7.8 0.00017 36.0 2.1 73 132-204 149-249 (445)
150 KOG4454 RNA binding protein (R 55.6 3.1 6.8E-05 37.2 -0.6 67 132-202 80-150 (267)
151 KOG2193 IGF-II mRNA-binding pr 53.5 0.83 1.8E-05 44.3 -4.8 68 131-204 79-146 (584)
152 PF03880 DbpA: DbpA RNA bindin 49.1 58 0.0013 23.3 5.4 59 134-204 2-66 (74)
153 KOG4410 5-formyltetrahydrofola 48.9 40 0.00087 31.5 5.4 51 132-190 330-380 (396)
154 KOG4019 Calcineurin-mediated s 47.9 10 0.00022 32.9 1.4 75 133-216 11-90 (193)
155 PF14893 PNMA: PNMA 45.4 17 0.00037 34.1 2.6 49 132-188 18-73 (331)
156 PF15513 DUF4651: Domain of un 41.4 37 0.00081 24.3 3.2 22 147-168 9-30 (62)
157 PF00403 HMA: Heavy-metal-asso 36.8 1.3E+02 0.0028 20.0 5.5 54 134-196 1-58 (62)
158 KOG2135 Proteins containing th 28.4 40 0.00086 33.3 2.1 66 132-206 372-442 (526)
159 PF07292 NID: Nmi/IFP 35 domai 26.6 43 0.00093 25.5 1.6 22 132-153 52-73 (88)
160 KOG4008 rRNA processing protei 26.5 36 0.00078 30.8 1.4 32 132-163 40-71 (261)
161 KOG4483 Uncharacterized conser 25.8 1.4E+02 0.003 29.2 5.2 54 133-196 392-446 (528)
162 cd07996 WGR_MMR_like WGR domai 25.3 1.7E+02 0.0037 20.5 4.6 34 161-198 30-63 (74)
163 PF11411 DNA_ligase_IV: DNA li 25.3 41 0.0009 21.6 1.1 16 142-157 19-34 (36)
164 COG5353 Uncharacterized protei 24.0 2.4E+02 0.0053 23.8 5.7 57 133-189 88-154 (161)
165 PF10567 Nab6_mRNP_bdg: RNA-re 22.8 1.7E+02 0.0038 27.2 5.1 61 132-192 15-79 (309)
166 COG0030 KsgA Dimethyladenosine 22.2 86 0.0019 28.5 3.0 34 133-166 96-129 (259)
167 PRK14548 50S ribosomal protein 21.6 1.6E+02 0.0035 22.1 4.0 56 135-196 23-80 (84)
168 PRK11901 hypothetical protein; 21.4 1.2E+02 0.0027 28.5 3.9 59 133-198 246-305 (327)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=8.7e-16 Score=126.24 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
+++|||+|||+++||++|+++|++||.|++|+|+.++ +++ ++|||||+|+++++|++|++.|||..|......+.
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~----~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR----SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC----cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 5799999999999999999999999999999999987 433 33499999999999999999999999987554544
Q ss_pred EE
Q 026648 211 VF 212 (235)
Q Consensus 211 ~~ 212 (235)
+.
T Consensus 110 ~a 111 (144)
T PLN03134 110 PA 111 (144)
T ss_pred eC
Confidence 43
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=8.3e-15 Score=136.07 Aligned_cols=72 Identities=28% Similarity=0.364 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..++|||+|||.++||++|+++|+.||.|++|+|+.++ +++.+| ||||+|.++++|++||+.|||..|....
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srG----yaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFG----YAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCc----EEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 46899999999999999999999999999999999987 433334 9999999999999999999998886543
No 3
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=1.7e-15 Score=106.15 Aligned_cols=67 Identities=27% Similarity=0.459 Sum_probs=60.2
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 135 LfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
|||+|||.++|+++|+++|++||.|..+.+..+.. +.+.++|||+|.+.++|++|++.|||+.+..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSS----GKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccc----ccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 79999999999999999999999999999999743 23445999999999999999999999988753
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.1e-15 Score=136.38 Aligned_cols=155 Identities=17% Similarity=0.235 Sum_probs=118.9
Q ss_pred CCCCccCCCccccccCCcCCCcccCcccccchhhhhhcCC--CcCCCCC-CCCCcccCCCCCCCCCCCCccccCCCCCCC
Q 026648 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (235)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~y~~~~~--~~s~~~g-~~~r~~gGg~~G~~~~~r~~~g~gg~~~~~ 109 (235)
++.+||..-.+|+.|-. +--|.|+|+|.+..+. -|++ |+||-.- ++-+++. +|+|.=+..|.++ ...+.+.+
T Consensus 69 dls~eI~~e~lr~aF~p-FGevS~akvirD~~T~--KsKGYgFVSf~~k~dAEnAI~-~MnGqWlG~R~IR-TNWATRKp 143 (321)
T KOG0148|consen 69 DLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNTG--KSKGYGFVSFPNKEDAENAIQ-QMNGQWLGRRTIR-TNWATRKP 143 (321)
T ss_pred hcchhcchHHHHHHhcc-ccccccceEeecccCC--cccceeEEeccchHHHHHHHH-HhCCeeeccceee-ccccccCc
Confidence 89999999999997754 5567799999988874 7776 7888774 5557887 8999888887653 44544433
Q ss_pred CCCC-CcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHH
Q 026648 110 SAKD-RALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188 (235)
Q Consensus 110 ~~~~-r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~ 188 (235)
...+ ....|-. .-....| + +++|||+|++.-+||++|++.|++||.|.+||+-+++ | |+||.|+++|
T Consensus 144 ~e~n~~~ltfde-V~NQssp-~-NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-----G----YaFVrF~tkE 211 (321)
T KOG0148|consen 144 SEMNGKPLTFDE-VYNQSSP-D-NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-----G----YAFVRFETKE 211 (321)
T ss_pred cccCCCCccHHH-HhccCCC-C-CceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-----c----eEEEEecchh
Confidence 2211 1111110 0012222 2 6999999999999999999999999999999999997 6 9999999999
Q ss_pred HHHHHHHHhcCceEee
Q 026648 189 HAATAMDALQGQSNII 204 (235)
Q Consensus 189 ~A~~Ai~~LnG~~i~~ 204 (235)
.|+.||..+||.+|..
T Consensus 212 aAahAIv~mNntei~G 227 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGG 227 (321)
T ss_pred hHHHHHHHhcCceeCc
Confidence 9999999999999986
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.58 E-value=1e-14 Score=132.80 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
+.+|||+|||+++++++|+++|++||.|++|+|+.++ ++..+| ||||+|.+.++|.+||++|||++|......+.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG----~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKG----YGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccc----eEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4579999999999999999999999999999999997 544444 99999999999999999999999986444443
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=5.2e-15 Score=145.21 Aligned_cols=97 Identities=21% Similarity=0.175 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 128 ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
+++..++|||+|||.+++|++|+++|++||.|.+|+|+.|.++. ++|||||+|.+.++|++||+.|||++|...+.
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~----sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~ 129 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ----NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL 129 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC----ccceEEEEeCCHHHHHHHHHHcCCCeecCCcc
Confidence 34456899999999999999999999999999999999997433 33499999999999999999999999875554
Q ss_pred ceEEEEecccccccCcceeec
Q 026648 208 NLVVFYQIACEYISDKICVHI 228 (235)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ 228 (235)
+.+.....+|..++.+|..++
T Consensus 130 l~V~~S~~~~rLFVgNLP~~~ 150 (578)
T TIGR01648 130 LGVCISVDNCRLFVGGIPKNK 150 (578)
T ss_pred ccccccccCceeEeecCCcch
Confidence 433344457777777776654
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=1.6e-15 Score=140.76 Aligned_cols=155 Identities=13% Similarity=0.108 Sum_probs=111.1
Q ss_pred CCCCccCCCccccccCCcCCCcccCcccccchhhhhhcCC--CcCCCCCCC-CCcccCCCCCCCCCCCCccccCCCCCCC
Q 026648 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGGQS-ARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (235)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~y~~~~~--~~s~~~g~~-~r~~gGg~~G~~~~~r~~~g~gg~~~~~ 109 (235)
.+..|++..-+++.|.. +-.|++.+++.+..+. ++++ |+.|.+.+. ..++. .++|..+.++.+...-. .
T Consensus 114 nLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~tg--~srGyaFVeF~~~e~A~~Ai~-~LnG~~l~gr~i~V~~a-~--- 185 (346)
T TIGR01659 114 YLPQDMTDRELYALFRT-IGPINTCRIMRDYKTG--YSFGYAFVDFGSEADSQRAIK-NLNGITVRNKRLKVSYA-R--- 185 (346)
T ss_pred CCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCC--ccCcEEEEEEccHHHHHHHHH-HcCCCccCCceeeeecc-c---
Confidence 45667777777777765 3447777777765553 4443 778877644 45776 78888887776532211 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHH
Q 026648 110 SAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPA 188 (235)
Q Consensus 110 ~~~~r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~ 188 (235)
+.. .....++|||+|||.++||++|+++|++||.|++|+|+.++ ++ ++++||||+|++++
T Consensus 186 -------------p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg----~~kG~aFV~F~~~e 246 (346)
T TIGR01659 186 -------------PGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTG----TPRGVAFVRFNKRE 246 (346)
T ss_pred -------------ccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCC----ccceEEEEEECCHH
Confidence 000 01124689999999999999999999999999999999987 43 34449999999999
Q ss_pred HHHHHHHHhcCceEeeeee-ceEEEEe
Q 026648 189 HAATAMDALQGQSNIICLS-NLVVFYQ 214 (235)
Q Consensus 189 ~A~~Ai~~LnG~~i~~~r~-~~~~~~~ 214 (235)
+|++||++||++.+..... +.|-+++
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~ 273 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAE 273 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECC
Confidence 9999999999998876543 3344444
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.57 E-value=1.1e-14 Score=132.41 Aligned_cols=71 Identities=25% Similarity=0.424 Sum_probs=63.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.++|||+|||.++||++|+++|++||.|++|+|+.++ + |+++|||||+|.+.++|++||+.|||+.|....
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~----g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVT----GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCC----CccceEEEEEECcHHHHHHHHhhcccEEECCee
Confidence 5799999999999999999999999999999999987 3 334459999999999999999999998887543
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=3e-14 Score=134.00 Aligned_cols=91 Identities=23% Similarity=0.271 Sum_probs=83.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
...+.|||+.||.++.|+||..||++.|.|-++||+.|+ + |+++|||||.|-+.++|++||+.||+++|.-.+.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s----G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS----GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccC----CCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 457899999999999999999999999999999999997 4 44555999999999999999999999999988887
Q ss_pred eEEEEecccccccCcc
Q 026648 209 LVVFYQIACEYISDKI 224 (235)
Q Consensus 209 ~~~~~~~~~~~~~~~~ 224 (235)
-|++...||..+.++|
T Consensus 157 gvc~Svan~RLFiG~I 172 (506)
T KOG0117|consen 157 GVCVSVANCRLFIGNI 172 (506)
T ss_pred EEEEeeecceeEeccC
Confidence 7888888999999887
No 10
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.8e-14 Score=111.71 Aligned_cols=88 Identities=23% Similarity=0.397 Sum_probs=77.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 124 EVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 124 ~~~~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
...+||+.+..|||+|||+++|.|++.+||.+||.|..|||-..+. .+ | -|||.|++..+|.+|++.|+|+.+.
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-Tr-G----TAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-TR-G----TAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-cC-c----eEEEEehHhhhHHHHHHHhcccccC
Confidence 3457788889999999999999999999999999999999998872 12 4 9999999999999999999999887
Q ss_pred eeeeceEEEEecccc
Q 026648 204 ICLSNLVVFYQIACE 218 (235)
Q Consensus 204 ~~r~~~~~~~~~~~~ 218 (235)
.+++++++|+.+.+
T Consensus 84 -~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 84 -NRYLVVLYYQPEDA 97 (124)
T ss_pred -CceEEEEecCHHHH
Confidence 47888888886543
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.6e-14 Score=116.80 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.++||||+||++.++||+|.+||+++|.|+.|-|-.++ ++.+.| ||||+|.+.++|+.|++.++|++++.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCG----FCFVeyy~~~dA~~AlryisgtrLdd 105 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCG----FCFVEYYSRDDAEDALRYISGTRLDD 105 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccc----eEEEEEecchhHHHHHHHhccCcccc
Confidence 47899999999999999999999999999999999998 555555 99999999999999999999999985
No 12
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.5e-13 Score=116.21 Aligned_cols=70 Identities=23% Similarity=0.407 Sum_probs=63.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
.++|||+||+..+++.||+.+|..||.|.+|-|...+ .| ||||||+++.+|+.|+..|+|.+|..++..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PG----fAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PG----FAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CC----ceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 4799999999999999999999999999999888754 24 9999999999999999999999998877654
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=8.5e-13 Score=116.45 Aligned_cols=78 Identities=28% Similarity=0.406 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
.++|-|.|||.+++|++|++||.+||.|.+|.|+.++ ++..+| ||||.|.++++|++||+.|||+-++ +|.
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kG----FAFVtF~sRddA~rAI~~LnG~gyd----~LI 260 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKG----FAFVTFESRDDAARAIADLNGYGYD----NLI 260 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccc----eEEEEEecHHHHHHHHHHccCcccc----eEE
Confidence 6899999999999999999999999999999999998 544444 9999999999999999999999888 455
Q ss_pred EEEeccc
Q 026648 211 VFYQIAC 217 (235)
Q Consensus 211 ~~~~~~~ 217 (235)
+-.+|..
T Consensus 261 LrvEwsk 267 (270)
T KOG0122|consen 261 LRVEWSK 267 (270)
T ss_pred EEEEecC
Confidence 5555543
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.42 E-value=6.9e-13 Score=94.16 Aligned_cols=66 Identities=23% Similarity=0.434 Sum_probs=57.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 135 LfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
|||+|||+++++++|.++|+.||.|.++++..++.+ .++++|||+|.++++|++|++.++|..+..
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~----~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDG----QSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTS----SEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeecc----ccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 799999999999999999999999999999988642 444599999999999999999999888764
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.41 E-value=1.2e-12 Score=125.04 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
+..++|||+|||..+|+++|+++|+.||.|+.++|+.++ ++ .++|||||+|.+.++|+.|++.|+|+.|......
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g----~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~ 368 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG----LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH 368 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC----CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345799999999999999999999999999999999886 43 3344999999999999999999999999865544
Q ss_pred eEEE
Q 026648 209 LVVF 212 (235)
Q Consensus 209 ~~~~ 212 (235)
+..+
T Consensus 369 v~~a 372 (509)
T TIGR01642 369 VQRA 372 (509)
T ss_pred EEEC
Confidence 4444
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.41 E-value=4.5e-13 Score=132.15 Aligned_cols=162 Identities=11% Similarity=0.088 Sum_probs=106.5
Q ss_pred CCCccCCCccccccCCcCCCcccCcccccchhhhhhcCC--CcCCCCCCCC-CcccCCCCCCCCCCCCccccCCCCCCCC
Q 026648 34 SGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGPS 110 (235)
Q Consensus 34 ~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~y~~~~~--~~s~~~g~~~-r~~gGg~~G~~~~~r~~~g~gg~~~~~~ 110 (235)
+..+++.=-+++.|.. |-.|++.+.+.+..+. .+++ |+.|.+.+.+ +++. .|+|..+.++.+....... .
T Consensus 115 Lp~~~tEe~Lr~lF~~-fG~I~sV~I~~D~~Tg--kskGfAFVeF~s~e~A~~Ai~-~lnG~~i~GR~IkV~rp~~---~ 187 (612)
T TIGR01645 115 ISFELREDTIRRAFDP-FGPIKSINMSWDPATG--KHKGFAFVEYEVPEAAQLALE-QMNGQMLGGRNIKVGRPSN---M 187 (612)
T ss_pred CCCCCCHHHHHHHHHc-cCCEEEEEEeecCCCC--CcCCeEEEEeCcHHHHHHHHH-hcCCeEEecceeeeccccc---c
Confidence 3444554445554433 5556666666655443 4554 6777776444 5665 7888888888764321100 0
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHH
Q 026648 111 AKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAH 189 (235)
Q Consensus 111 ~~~r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~ 189 (235)
+.... .. ..........++|||+|||.++++++|+++|+.||.|++|+|+.++ ++..+| ||||+|++.++
T Consensus 188 p~a~~--~~---~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKG----fGFVeFe~~e~ 258 (612)
T TIGR01645 188 PQAQP--II---DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKG----YGFIEYNNLQS 258 (612)
T ss_pred ccccc--cc---ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCC----eEEEEECCHHH
Confidence 00000 00 0000111234799999999999999999999999999999999987 333334 99999999999
Q ss_pred HHHHHHHhcCceEeeeeeceEE
Q 026648 190 AATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 190 A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
|.+||+.|||+.|..-...++.
T Consensus 259 A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEe
Confidence 9999999999988754444443
No 17
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=2.2e-12 Score=88.51 Aligned_cols=67 Identities=28% Similarity=0.425 Sum_probs=59.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+|||+|||..+++++|+++|++||.|.++++..++ + .+.++|||+|.+.++|+.|++.|+|..+...
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~----~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-G----KSKGFAFVEFESEEDAEKAIEALNGTKLGGR 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-C----CCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence 59999999999999999999999999999999876 2 2334999999999999999999999887653
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=1e-12 Score=115.30 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=64.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
-++|||++|+++++.|+|++.|++||+|+++.|+.|+ +++++| |+||.|.+.+.|++|++.-+ -.|+..+.++.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskG----yGfVTf~d~~aa~rAc~dp~-piIdGR~aNcn 86 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKG----YGFVTFRDAEAATRACKDPN-PIIDGRKANCN 86 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccc----eeeEEeecHHHHHHHhcCCC-Ccccccccccc
Confidence 3689999999999999999999999999999999999 544444 99999999999999987533 34555555666
Q ss_pred EEEe
Q 026648 211 VFYQ 214 (235)
Q Consensus 211 ~~~~ 214 (235)
+++=
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 5544
No 19
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=2.5e-12 Score=117.48 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
.-+.|+|.||||...|.||+.+|++||.|.+|.|+..+.+++ | |+||.|++.++|++|.++|||..|...+.+|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSK-G----FGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSK-G----FGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCC-c----cceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 347899999999999999999999999999999999985544 3 99999999999999999999999998888887
Q ss_pred EEEe
Q 026648 211 VFYQ 214 (235)
Q Consensus 211 ~~~~ 214 (235)
++..
T Consensus 170 ~ATa 173 (376)
T KOG0125|consen 170 NATA 173 (376)
T ss_pred ccch
Confidence 6543
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.35 E-value=3.6e-12 Score=120.30 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=66.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
.++|||+|||.++|+++|+++|++||.|++|+|+.++.. |+++|||||+|.+.++|++|++.|||+.|......|.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPET---GRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 579999999999999999999999999999999998721 33444999999999999999999999988764444444
Q ss_pred E
Q 026648 212 F 212 (235)
Q Consensus 212 ~ 212 (235)
+
T Consensus 263 a 263 (457)
T TIGR01622 263 A 263 (457)
T ss_pred c
Confidence 3
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=6.9e-13 Score=124.60 Aligned_cols=86 Identities=26% Similarity=0.377 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc-eEeeeee-ce
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ-SNIICLS-NL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~-~i~~~r~-~~ 209 (235)
..+|||+.|+..+||.|++++|++||.|++|+|+++..+..+| ||||.|.+++.|..||++|||. ++..|.. ++
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRG----caFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRG----CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccc----eeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 4689999999999999999999999999999999998554445 9999999999999999999997 6888996 55
Q ss_pred EEEEeccccccc
Q 026648 210 VVFYQIACEYIS 221 (235)
Q Consensus 210 ~~~~~~~~~~~~ 221 (235)
+.|+|-.+++..
T Consensus 200 VkFADtqkdk~~ 211 (510)
T KOG0144|consen 200 VKFADTQKDKDG 211 (510)
T ss_pred EEecccCCCchH
Confidence 669996555543
No 22
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=4.2e-12 Score=113.62 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=59.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.++|||+|||+.+||++|+++|+.||.|++|+|+.++. .+| ||||+|.++++|+.|+ .|+|..|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~G----fAFVtF~d~eaAe~Al-lLnG~~l~g 69 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQ----IAYVTFKDPQGAETAL-LLSGATIVD 69 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCC----EEEEEeCcHHHHHHHH-HhcCCeeCC
Confidence 47999999999999999999999999999999998863 224 9999999999999999 499998875
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.34 E-value=3e-12 Score=126.39 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=64.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
.++|||+|||+++++++|+++|++||.|++|+|+.++ +++. +|||||+|.+.++|++|++.|||..|......+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgks----kGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKH----KGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCc----CCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 5799999999999999999999999999999999987 4333 349999999999999999999999887644333
No 24
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.1e-12 Score=112.24 Aligned_cols=74 Identities=24% Similarity=0.450 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
+++|||+|||.++.|.||++||.+||.|.+|.|..... +.+||||+|+++.+|+.||..-+||.++.|+..+-+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g------~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG------PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC------CCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 57999999999999999999999999999999876652 233999999999999999999999999999976654
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.32 E-value=6.7e-12 Score=122.06 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=63.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+|||+|||.++||++|+++|++||.|++|+|.+++ +++ ++|||||+|.+.++|++|++.|++..|......+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~----s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i 74 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRR----SLGYGYVNFQNPADAERALETMNFKRLGGKPIRI 74 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC----cceEEEEEECCHHHHHHHHHHhCCCEECCeeEEe
Confidence 79999999999999999999999999999999997 333 3449999999999999999999998877644333
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=4.1e-12 Score=119.45 Aligned_cols=86 Identities=23% Similarity=0.460 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee-ec
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL-SN 208 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r-~~ 208 (235)
..-+|||+-+|...+|+||+++|++||.|.+|.|++|| ++.++| ||||.|.++++|.+|+.+|++.+..-.- ..
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~g----cCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKG----CCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccc----eEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34689999999999999999999999999999999999 554445 9999999999999999999999876644 34
Q ss_pred e-EEEEecccccc
Q 026648 209 L-VVFYQIACEYI 220 (235)
Q Consensus 209 ~-~~~~~~~~~~~ 220 (235)
+ +.++|.+++++
T Consensus 109 vqvk~Ad~E~er~ 121 (510)
T KOG0144|consen 109 VQVKYADGERERI 121 (510)
T ss_pred eeecccchhhhcc
Confidence 5 44999998886
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.29 E-value=1.1e-11 Score=120.45 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=66.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
..++|||+|||.++|+++|+++|++||.|++|+++.+..+..+| ||||+|.+.++|++|++.|||+.+.. +.+.|
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g----~gfV~f~~~~~A~~A~~~~~g~~~~g-k~l~V 358 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRG----FGFVCFSNPEEANRAVTEMHGRMLGG-KPLYV 358 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCC----eEEEEeCCHHHHHHHHHHhcCCeeCC-ceeEE
Confidence 35789999999999999999999999999999999997544444 99999999999999999999987764 33334
Q ss_pred EEEe
Q 026648 211 VFYQ 214 (235)
Q Consensus 211 ~~~~ 214 (235)
-+++
T Consensus 359 ~~a~ 362 (562)
T TIGR01628 359 ALAQ 362 (562)
T ss_pred Eecc
Confidence 3443
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.29 E-value=1.2e-11 Score=116.73 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
..++|||+|||.++++++|+++|++||.|.+|+|+.++ ++ +++|||||+|.+.++|++||. |+|..+...
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~----~skg~afVeF~~~e~A~~Al~-l~g~~~~g~ 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSR----RSKGVAYVEFYDVESVIKALA-LTGQMLLGR 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC----CcceEEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 46899999999999999999999999999999999987 33 344499999999999999996 899887753
No 29
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.2e-11 Score=111.84 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
|+-+||||+-|+.+++|.+|++.|+.||.|+.|+||.++ ++. |+|||||+|+++.+...|.+..+|.+|+.-+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgk----skGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGK----SKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCC----ccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 456899999999999999999999999999999999998 544 4449999999999999999999999999633
No 30
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=2e-11 Score=102.24 Aligned_cols=71 Identities=31% Similarity=0.458 Sum_probs=63.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.++|||+|||.++|+++|+++|.+||.|..++++.++ .+ .++|||||+|.+.++|..|++.++|..+..-+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~----~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETG----KSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccC----ccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 5899999999999999999999999999999999997 43 33449999999999999999999999888633
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=1.7e-11 Score=108.42 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=59.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..||||+||++.+||++|+++|+.||.|.+|+|+.+. + .+| ||||+|.+++.|+.|+ .|+|..|..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~-e-t~g----fAfVtF~d~~aaetAl-lLnGa~l~d 70 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG-E-YAC----TAYVTFKDAYALETAV-LLSGATIVD 70 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC-C-cce----EEEEEECCHHHHHHHH-hcCCCeeCC
Confidence 4799999999999999999999999999999999885 2 223 9999999999999999 789998875
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.26 E-value=1.9e-11 Score=120.28 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=64.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~f--G~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
.++|||+|||.++|+++|+++|++| |.|++|+++. + ||||+|+++++|++|++.|||++|..+...+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------g----fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V 301 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------D----YAFVHFEDREDAVKAMDELNGKELEGSEIEV 301 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------C----eEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 5789999999999999999999999 9999998763 3 9999999999999999999999999877777
Q ss_pred EEEE
Q 026648 210 VVFY 213 (235)
Q Consensus 210 ~~~~ 213 (235)
.+.-
T Consensus 302 ~~Ak 305 (578)
T TIGR01648 302 TLAK 305 (578)
T ss_pred EEcc
Confidence 6653
No 33
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=5.8e-11 Score=81.79 Aligned_cols=67 Identities=31% Similarity=0.544 Sum_probs=59.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+|+|+|||..+++++|+++|+.||.|..+.+..++.....| +|||+|.+.++|..|++.+++..+..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~----~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKG----FAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcce----EEEEEECCHHHHHHHHHHhCCCeECC
Confidence 58999999999999999999999999999999877332233 99999999999999999999987654
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.25 E-value=2.5e-11 Score=116.79 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=57.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHh--cCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL--QGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~L--nG~~i~~ 204 (235)
+++|||+|||.+++|++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.| ++..|..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k-----~----~afVef~~~e~A~~Ai~~~~~~~~~l~g 67 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK-----R----QALVEFEDEESAKACVNFATSVPIYIRG 67 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC-----C----EEEEEeCchHHHHHHHHHhhcCCceEcC
Confidence 6899999999999999999999999999999999754 4 9999999999999999975 5555554
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=3.7e-11 Score=81.94 Aligned_cols=65 Identities=32% Similarity=0.483 Sum_probs=56.7
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 137 VgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
|+|||..+++++|+++|++||.|.++++..++. .+.++++|||+|.+.++|..|++.|++..+..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~---~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD---TGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC---CCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 689999999999999999999999999998762 12344499999999999999999999887753
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.25 E-value=3.1e-11 Score=116.10 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~-~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
++++|||+|||. .+|+++|++||++||.|.+|+|+.++ + | ||||+|.+.++|+.|++.|||..|......+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---~-g----~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v 345 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---K-E----TALIEMADPYQAQLALTHLNGVKLFGKPLRV 345 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---C-C----EEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 468999999998 69999999999999999999999874 2 4 9999999999999999999999998755444
Q ss_pred EE
Q 026648 210 VV 211 (235)
Q Consensus 210 ~~ 211 (235)
..
T Consensus 346 ~~ 347 (481)
T TIGR01649 346 CP 347 (481)
T ss_pred EE
Confidence 43
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=3.5e-11 Score=107.55 Aligned_cols=70 Identities=26% Similarity=0.422 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.+.|.|..||.++|++||+.||+..|+|++|+|++|| ..|+++||+||.|.++++|++||..|||.++..
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK---itGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~ 110 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN 110 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecc---ccccccccceeeecChHHHHHHHhhhcceeecc
Confidence 5789999999999999999999999999999999999 236677799999999999999999999988764
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.22 E-value=1.3e-11 Score=111.49 Aligned_cols=87 Identities=24% Similarity=0.331 Sum_probs=70.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEEE
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVVF 212 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~~ 212 (235)
-+|||+|||.++++.+|+.||++||+|++|.|+++ |+||..++...|+.||..|+||+|.. .++.+=
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg--~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHG--VNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecc--eEEEEE
Confidence 37999999999999999999999999999999976 99999999999999999999999985 333333
Q ss_pred EecccccccCccee-ecceee
Q 026648 213 YQIACEYISDKICV-HIKFLC 232 (235)
Q Consensus 213 ~~~~~~~~~~~~~~-~~~~~~ 232 (235)
.--|+-+..+++|| -|+|-|
T Consensus 70 aSksKsk~stkl~vgNis~tc 90 (346)
T KOG0109|consen 70 ASKSKSKASTKLHVGNISPTC 90 (346)
T ss_pred eccccCCCccccccCCCCccc
Confidence 33244346677776 355555
No 39
>PLN03213 repressor of silencing 3; Provisional
Probab=99.18 E-value=6.4e-11 Score=113.23 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=62.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCH--HHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP--AHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~--~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
..+||||||++++|++||+.+|++||.|++|.|++..+ + | ||||+|.+. .++.+||+.|||.++......|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--R-G----FAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--R-S----FAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--C-c----eEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 46899999999999999999999999999999995443 3 3 999999987 7899999999999988755444
Q ss_pred EE
Q 026648 210 VV 211 (235)
Q Consensus 210 ~~ 211 (235)
..
T Consensus 83 NK 84 (759)
T PLN03213 83 EK 84 (759)
T ss_pred ee
Confidence 43
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1e-11 Score=110.93 Aligned_cols=160 Identities=19% Similarity=0.346 Sum_probs=104.7
Q ss_pred CCCCCCCccCCCcccc----ccCCcCCCcccCcccccchhhh-hhcCC--CcCCCC-CCCCCcccCCCCCCCCCCCCccc
Q 026648 30 YDVPSGHELSSYYTRD----DDRGALRGMRDTDSLGASYDRY-LRSAQ--ISSYSG-GQSARHMSGGMPSRPVDDPRIVG 101 (235)
Q Consensus 30 ~~~~~~~~~~~y~~~~----~~r~~~~~~~~~~~~~~~~~~y-~~~~~--~~s~~~-g~~~r~~gGg~~G~~~~~r~~~g 101 (235)
-+..-.+-+.+||||. +.|.-+.++-+.++.--.-|.- .+|=+ |+-|-. .++-+++. -++|.-+-
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Ain-tlNGLrLQ------ 109 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAIN-TLNGLRLQ------ 109 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHh-hhcceeec------
Confidence 3445678899999985 5666666665554433222210 11111 222222 23333443 33332221
Q ss_pred cCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEE
Q 026648 102 IGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILC 180 (235)
Q Consensus 102 ~gg~~~~~~~~~r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~fa 180 (235)
.+.+..+-.+|....-. ...|||.+||..+|+.||+++|++||.|..-||..|. ++..+| .+
T Consensus 110 -----------~KTIKVSyARPSs~~Ik--~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srG----Vg 172 (360)
T KOG0145|consen 110 -----------NKTIKVSYARPSSDSIK--DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRG----VG 172 (360)
T ss_pred -----------cceEEEEeccCChhhhc--ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecc----ee
Confidence 23333333344333333 3589999999999999999999999999999999998 544444 99
Q ss_pred EEEecCHHHHHHHHHHhcCceEeeeeeceEE-EE
Q 026648 181 FVDFVSPAHAATAMDALQGQSNIICLSNLVV-FY 213 (235)
Q Consensus 181 FVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~-~~ 213 (235)
||.|+.+.+|+.||..|||.+-..|-..+.| |+
T Consensus 173 FiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 173 FIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred EEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 9999999999999999999999999887755 44
No 41
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.16 E-value=4.1e-11 Score=103.99 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=67.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
-.+|-|-||.+.+|.++|+.+|++||.|-+|.|+.|+ ++...| ||||.|....+|+.|+++|+|..|+.-.+.|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRg----FaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRG----FAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccc----eeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 4689999999999999999999999999999999998 655555 99999999999999999999999997544444
Q ss_pred E
Q 026648 211 V 211 (235)
Q Consensus 211 ~ 211 (235)
+
T Consensus 89 ~ 89 (256)
T KOG4207|consen 89 M 89 (256)
T ss_pred h
Confidence 3
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=4.9e-11 Score=112.60 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=63.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEEE
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVVF 212 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~~ 212 (235)
+.|||+||+.++|||.|+++|++||.|.+|+.++| ||||.|.++++|.+|++.+||+.|+.--..++++
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 67999999999999999999999999999998866 9999999999999999999999999866666664
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.10 E-value=1.2e-10 Score=99.25 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
+...||||+||+..+|++-|.+||-+.|.|+.++++.++ .....| ||||||.++++|+-|++.||..+++.....
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qG----ygF~Ef~~eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQG----YGFAEFRTEEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccc----eeEEEEechhhhHHHHHHHHHHHhcCceeE
Confidence 345799999999999999999999999999999999999 432334 999999999999999999998777764444
Q ss_pred eEEE
Q 026648 209 LVVF 212 (235)
Q Consensus 209 ~~~~ 212 (235)
+..+
T Consensus 83 v~ka 86 (203)
T KOG0131|consen 83 VNKA 86 (203)
T ss_pred EEec
Confidence 4333
No 44
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2e-10 Score=103.09 Aligned_cols=86 Identities=29% Similarity=0.400 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee-ee-ece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII-CL-SNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~-~r-~~~ 209 (235)
.++|||+.|...-+|||++.+|.+||.|.+|.+.+...+..+| |+||.|.+..+|..||.+|+|.+.-- .. +++
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKG----CAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKG----CAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCC----ceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 4799999999999999999999999999999999998766666 99999999999999999999986433 33 577
Q ss_pred EEEEeccccccc
Q 026648 210 VVFYQIACEYIS 221 (235)
Q Consensus 210 ~~~~~~~~~~~~ 221 (235)
+.|.|-.+|-..
T Consensus 95 VK~ADTdkER~l 106 (371)
T KOG0146|consen 95 VKFADTDKERTL 106 (371)
T ss_pred EEeccchHHHHH
Confidence 889996666443
No 45
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.6e-10 Score=108.49 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=94.9
Q ss_pred CccCCCcccccc-----CCcCCCcccCcccccchhhhhhcCCCcCCCCCCCCCcccCCCCCCCCCCCCccccCCCCCCCC
Q 026648 36 HELSSYYTRDDD-----RGALRGMRDTDSLGASYDRYLRSAQISSYSGGQSARHMSGGMPSRPVDDPRIVGIGGMDPGPS 110 (235)
Q Consensus 36 ~~~~~y~~~~~~-----r~~~~~~~~~~~~~~~~~~y~~~~~~~s~~~g~~~r~~gGg~~G~~~~~r~~~g~gg~~~~~~ 110 (235)
++||.=++-|-| -..-+.+||+ + +.-..|++.. ...++.+|+- .|+...+.+..++.. ...+
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~-----~~~da~~A~~-~~n~~~~~~~~~rim-~s~r--- 74 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQ-----QPADAERALD-TMNFDVLKGKPIRIM-WSQR--- 74 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecC-----CHHHHHHHHH-HcCCcccCCcEEEee-hhcc---
Confidence 455555555533 2345778888 5 5555555543 2246677887 788777777654322 2111
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHH
Q 026648 111 AKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA 190 (235)
Q Consensus 111 ~~~r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A 190 (235)
++ ..|||.||+.+++.++|.++|+.||.|++|+|..++.+.+ | | ||+|++++.|
T Consensus 75 -------------------d~-~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~k-g----~-FV~f~~e~~a 128 (369)
T KOG0123|consen 75 -------------------DP-SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSK-G----Y-FVQFESEESA 128 (369)
T ss_pred -------------------CC-ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCce-e----e-EEEeCCHHHH
Confidence 11 1299999999999999999999999999999999996533 3 9 9999999999
Q ss_pred HHHHHHhcCceEeeee
Q 026648 191 ATAMDALQGQSNIICL 206 (235)
Q Consensus 191 ~~Ai~~LnG~~i~~~r 206 (235)
.+||+.|||..+....
T Consensus 129 ~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 129 KKAIEKLNGMLLNGKK 144 (369)
T ss_pred HHHHHHhcCcccCCCe
Confidence 9999999988666543
No 46
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.8e-11 Score=103.14 Aligned_cols=69 Identities=17% Similarity=0.394 Sum_probs=63.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+..|||+|||++.||.||--+|++||.|+.|.|++|+ + |+++||||..|++.....-|+..|||.+|..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~T----GKSKGFaFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKT----GKSKGFAFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCC----CcccceEEEEecCccceEEEEeccCCceecc
Confidence 5689999999999999999999999999999999998 4 4455599999999999999999999999986
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.05 E-value=2.6e-10 Score=109.78 Aligned_cols=149 Identities=20% Similarity=0.276 Sum_probs=101.9
Q ss_pred CCCcccCcccccchhhhhhcCC--CcCCCCCCCCCcccCCCCCCCCCCCCccccCC-CC----CCCCCCCCcCCCCCCCC
Q 026648 51 LRGMRDTDSLGASYDRYLRSAQ--ISSYSGGQSARHMSGGMPSRPVDDPRIVGIGG-MD----PGPSAKDRALGLGGGRS 123 (235)
Q Consensus 51 ~~~~~~~~~~~~~~~~y~~~~~--~~s~~~g~~~r~~gGg~~G~~~~~r~~~g~gg-~~----~~~~~~~r~~g~~~~~p 123 (235)
.-.|||...|++-..+ ++++ ++-|-+.++-.-+- ++.|..+.+-++|..-. +. ...++.-.+.++.
T Consensus 203 ~gkVrdVriI~Dr~s~--rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~---- 275 (549)
T KOG0147|consen 203 VGKVRDVRIIGDRNSR--RSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFT---- 275 (549)
T ss_pred hcCcceeEeeccccch--hhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHhccccccccccc----
Confidence 3568999999988885 7776 45555555543222 56776665555554211 00 0001101111111
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceE
Q 026648 124 EVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSN 202 (235)
Q Consensus 124 ~~~~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i 202 (235)
.| -..|||+||.+++++++|+.+|++||.|..|.+..+. ++..+| |+||+|.+.++|.+|+++|||++|
T Consensus 276 ---~p---~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skg----fGfi~f~~~~~ar~a~e~lngfel 345 (549)
T KOG0147|consen 276 ---GP---MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKG----FGFITFVNKEDARKALEQLNGFEL 345 (549)
T ss_pred ---cc---hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccC----cceEEEecHHHHHHHHHHhcccee
Confidence 01 1239999999999999999999999999999999996 555555 999999999999999999999877
Q ss_pred eeeeeceEEEEecc
Q 026648 203 IICLSNLVVFYQIA 216 (235)
Q Consensus 203 ~~~r~~~~~~~~~~ 216 (235)
-.--.-|+++.+-.
T Consensus 346 AGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 346 AGRLIKVSVVTERV 359 (549)
T ss_pred cCceEEEEEeeeec
Confidence 76445567776643
No 48
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.9e-10 Score=104.34 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
.+.|||..|.+-+|.++|+-||+.||.|.+|.|++++ +.|+++.||||+|++.+++++|.-+|++..|+..|.+|
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~---ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDR---KTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecc---cccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 4899999999999999999999999999999999998 34789999999999999999999999999999866655
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=8.2e-10 Score=106.62 Aligned_cols=63 Identities=29% Similarity=0.455 Sum_probs=58.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~L 197 (235)
...||||+|||+++||++|.+.|++||.|..+.|+.++ ++++.| .|||.|.++..|..||++.
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skG----tAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKG----TAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCccc----ceEEEeccHHHHHHHHHhc
Confidence 34899999999999999999999999999999999999 766666 9999999999999999987
No 50
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.02 E-value=5.3e-10 Score=106.76 Aligned_cols=73 Identities=25% Similarity=0.328 Sum_probs=65.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
++|||||+|++++|++|.++|+..|.|.+++++.|+ + |+++||+|++|.+.++|+.|++.|||+++......+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~t----G~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRET----GKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccC----CCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 789999999999999999999999999999999998 4 455559999999999999999999999888533333
No 51
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=5.8e-10 Score=91.33 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
...|||.++..+.||++|.+.|..||.|+.+.|-.|+ ++--+| ||.|+|++.++|++|+++|||..|..-...+-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KG----YaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKG----YALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccc----eeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 5789999999999999999999999999999999998 544444 99999999999999999999988775444443
Q ss_pred E
Q 026648 211 V 211 (235)
Q Consensus 211 ~ 211 (235)
|
T Consensus 148 w 148 (170)
T KOG0130|consen 148 W 148 (170)
T ss_pred E
Confidence 3
No 52
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=7.5e-10 Score=99.31 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=65.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
-.+||+-|..+++-|+|++.|.+||+|.++||++|. +.+.+| |+||.|.++++|+.||+.|||.=|.-.-....|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKG----YgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKG----YGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccc----eeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 469999999999999999999999999999999998 544444 999999999999999999999876643344454
Q ss_pred E
Q 026648 212 F 212 (235)
Q Consensus 212 ~ 212 (235)
+
T Consensus 139 A 139 (321)
T KOG0148|consen 139 A 139 (321)
T ss_pred c
Confidence 3
No 53
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.8e-10 Score=99.71 Aligned_cols=77 Identities=23% Similarity=0.398 Sum_probs=67.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC--CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE--SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk--~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
..+||||++|..+++|.-|...|-+||.|+.|.++.|- .+||+ |+||+|+-.++|..||..||+.+|...-..
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRg-----FgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRG-----FGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccc-----eeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 36899999999999999999999999999999999997 66665 999999999999999999999888764444
Q ss_pred eEEE
Q 026648 209 LVVF 212 (235)
Q Consensus 209 ~~~~ 212 (235)
+.++
T Consensus 84 VN~A 87 (298)
T KOG0111|consen 84 VNLA 87 (298)
T ss_pred Eeec
Confidence 4443
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.2e-09 Score=105.41 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=66.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
...|.|+|||+.|.+++|+.+|+.||.|.+|.|++.+++.-.| ||||.|....+|+.|++.+||.+|+..-..+=|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcG----FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCG----FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccc----eEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 4689999999999999999999999999999999777322224 999999999999999999999999953334444
Q ss_pred EEe
Q 026648 212 FYQ 214 (235)
Q Consensus 212 ~~~ 214 (235)
+.+
T Consensus 193 AV~ 195 (678)
T KOG0127|consen 193 AVD 195 (678)
T ss_pred ecc
Confidence 443
No 55
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.96 E-value=2e-09 Score=102.91 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCC----------CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 131 ASSTLFVEGLPSD----------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 131 ~~~tLfVgNLP~~----------vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
++.+|+|.||... ...++|+++|++||.|++|+|+........+..+|++||+|.+.++|++|+++|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 3578999999642 123689999999999999999876411111223459999999999999999999999
Q ss_pred eEeeeeeceEEEEecc
Q 026648 201 SNIICLSNLVVFYQIA 216 (235)
Q Consensus 201 ~i~~~r~~~~~~~~~~ 216 (235)
++.. +..++.||+.+
T Consensus 488 ~~~g-r~v~~~~~~~~ 502 (509)
T TIGR01642 488 KFND-RVVVAAFYGED 502 (509)
T ss_pred EECC-eEEEEEEeCHH
Confidence 9874 66777788854
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.95 E-value=4.8e-09 Score=71.89 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=44.9
Q ss_pred HHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 149 VAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 149 L~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
|.++|++||.|+++++..++ ++ +|||+|.+.++|++|++.|||..+..+...+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~----~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V 53 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RG----FAFVEFASVEDAQKAIEQLNGRQFNGRPLKV 53 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TT----EEEEEESSHHHHHHHHHHHTTSEETTEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 68999999999999998775 24 9999999999999999999999987654333
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=98.90 E-value=5.1e-09 Score=75.42 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=47.2
Q ss_pred HHHHHHhhc----CCCCeEEEE-EeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 146 RREVAHIFR----PFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 146 eedL~~lF~----~fG~I~~vr-l~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+++|+++|+ +||.|.+|. ++.++.. ..|.++|||||+|.+.++|++|++.|||..+...
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG-YENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC-CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 678889998 999999995 6666511 0123445999999999999999999999988753
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=2.3e-09 Score=96.29 Aligned_cols=77 Identities=22% Similarity=0.369 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+.|+|||=.||.+..+.||-.+|-+||.|++.++..|+ +. .+++|+||.|+++..|+.||.+|||+.|.+.|.-+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATN----QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATN----QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccc----cccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 47999999999999999999999999999999999998 32 34569999999999999999999999999987655
Q ss_pred EE
Q 026648 210 VV 211 (235)
Q Consensus 210 ~~ 211 (235)
.+
T Consensus 360 QL 361 (371)
T KOG0146|consen 360 QL 361 (371)
T ss_pred hh
Confidence 44
No 59
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=4.4e-09 Score=103.88 Aligned_cols=82 Identities=29% Similarity=0.368 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
.++|.|+|||+..+.++++.||..||.|++|||+...++ +..+|||||+|-++.+|..|+++|.++.++..|.-|-|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k---~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK---GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcc---hhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 578999999999999999999999999999999988421 22234999999999999999999999999976555566
Q ss_pred EEecc
Q 026648 212 FYQIA 216 (235)
Q Consensus 212 ~~~~~ 216 (235)
.-++|
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 65544
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.79 E-value=2.9e-08 Score=94.09 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.++|||+|||+++||..|++-|..||.++.+.|+. . |+++ +.|.|.++++|+.|+..|+|.+++.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-~-----Gksk--GVVrF~s~edAEra~a~Mngs~l~G 600 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-N-----GKSK--GVVRFFSPEDAERACALMNGSRLDG 600 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhc-c-----CCcc--ceEEecCHHHHHHHHHHhccCcccC
Confidence 58899999999999999999999999999988843 2 2232 3899999999999999999999886
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=6.2e-09 Score=94.30 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
++++|+|+||.+.|+..||+..|++||.+.++.|+++ |+||.|+-.++|..||+.|+|.++..-+..+.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccceeeee
Confidence 3679999999999999999999999999999999986 99999999999999999999999998887776
Q ss_pred E
Q 026648 211 V 211 (235)
Q Consensus 211 ~ 211 (235)
+
T Consensus 146 ~ 146 (346)
T KOG0109|consen 146 L 146 (346)
T ss_pred e
Confidence 5
No 62
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.76 E-value=1.4e-08 Score=101.24 Aligned_cols=72 Identities=22% Similarity=0.407 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
-++|||||.|+..++|.||..+|+.||.|.+|.|+..+ | ||||....+.+|++|+.+|+.+++.....-+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-----~----cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-----G----CAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-----c----eeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 36899999999999999999999999999999999876 4 99999999999999999999887765443333
Q ss_pred E
Q 026648 211 V 211 (235)
Q Consensus 211 ~ 211 (235)
|
T Consensus 491 W 491 (894)
T KOG0132|consen 491 W 491 (894)
T ss_pred e
Confidence 3
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.73 E-value=2.9e-08 Score=86.79 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=61.2
Q ss_pred CCeEEEcCCCCCCCHHHHHH----hhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAH----IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~----lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
+.||||.||+..+..++|++ ||++||.|.+|...... +.+| -|||.|.+.+.|..|+.+|+|+.++..-.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRG-----QA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRG-----QAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccC-----ceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 45999999999999999998 99999999998876554 3343 99999999999999999999998876433
Q ss_pred ce
Q 026648 208 NL 209 (235)
Q Consensus 208 ~~ 209 (235)
.+
T Consensus 83 ri 84 (221)
T KOG4206|consen 83 RI 84 (221)
T ss_pred he
Confidence 33
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=1.3e-08 Score=94.65 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=62.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+.||||.+.+++.|+.|+..|.+||.|+++.+-+|. +++.+| ||||||+-+|.|+-|++.|||..+..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKg----FAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKG----FAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccc----eEEEEEeCcHHHHHHHHHhccccccC
Confidence 789999999999999999999999999999999998 544445 99999999999999999999876654
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=2.9e-08 Score=98.19 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=62.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++|||.||++++|.++|..+|...|.|+++.|...+.....=-+.|||||+|.++++|+.|+++|||+.|+.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 449999999999999999999999999999998877332121234699999999999999999999999885
No 66
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.70 E-value=4.9e-08 Score=85.86 Aligned_cols=73 Identities=37% Similarity=0.519 Sum_probs=61.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 129 pd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+++-+||||.+||.++..+||..||..|-+++.+.|.... .++.. +.+|||.|.+...|..|+++|||.+++.
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~---~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVC---KPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccc---cceEEEEecchHHHHHHHHHhcCeeecc
Confidence 4567999999999999999999999999999888776553 22111 1499999999999999999999999986
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.66 E-value=9.6e-08 Score=90.63 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=60.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~-~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.+.+||.|+|+++.|.+|++||. +.|+|..|.|..|+.++..| ||.|||+++|.+++|++.||-+.+..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rG----cavVEFk~~E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARG----CAVVEFKDPENVQKALEKLNKYEVNG 113 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCC----ceEEEeeCHHHHHHHHHHhhhccccC
Confidence 35699999999999999999997 56889999999998543334 99999999999999999999887763
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.64 E-value=5.7e-08 Score=89.41 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=99.8
Q ss_pred CCccCCCccccccCCcCCCcccCcccccchhhhhhcCC--CcCCCCCCCCCcccCCCCCCCCCCCCccccCCCCCCCCCC
Q 026648 35 GHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGGQSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAK 112 (235)
Q Consensus 35 ~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~y~~~~~--~~s~~~g~~~r~~gGg~~G~~~~~r~~~g~gg~~~~~~~~ 112 (235)
..+.+.--+||-+ ..|-.|.|..++.+... .|+.+ |+.|...+..-..- ...-+.++++.+--
T Consensus 15 sw~ttee~Lr~yf-~~~Gev~d~~vm~d~~t--~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~----------- 79 (311)
T KOG4205|consen 15 SWETTEESLREYF-SQFGEVTDCVVMRDPST--GRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEP----------- 79 (311)
T ss_pred CccccHHHHHHHh-cccCceeeEEEeccCCC--CCcccccceecCCCcchheee-cccccccCCccccc-----------
Confidence 3344444455555 67788889999998877 46654 56666443332221 23334445543311
Q ss_pred CCcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHH
Q 026648 113 DRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAAT 192 (235)
Q Consensus 113 ~r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~ 192 (235)
.++.....+ ....-.....+|||++||.++++++|++.|.+||.|..+.++.|+.. .++++|+||.|.+++.+.+
T Consensus 80 k~av~r~~~--~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~---~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 80 KRAVSREDQ--TKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT---SRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred eeccCcccc--cccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc---cccccceeeEeccccccce
Confidence 111110000 00000113568999999999999999999999999999999999822 2334499999999999999
Q ss_pred HHH----HhcCceEeeeeec
Q 026648 193 AMD----ALQGQSNIICLSN 208 (235)
Q Consensus 193 Ai~----~LnG~~i~~~r~~ 208 (235)
++. .|+|+++.++++.
T Consensus 155 v~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 155 VTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ecccceeeecCceeeEeecc
Confidence 885 5788888887764
No 69
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.61 E-value=3.2e-08 Score=87.07 Aligned_cols=66 Identities=29% Similarity=0.577 Sum_probs=57.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..||||.||..+|||++|+.+|+.|.++..++|-..- |.+ .|||+|++.+.|..|+..|+|..|.-
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-----g~~--vaf~~~~~~~~at~am~~lqg~~~s~ 275 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-----GMP--VAFADFEEIEQATDAMNHLQGNLLSS 275 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-----Ccc--eEeecHHHHHHHHHHHHHhhcceecc
Confidence 4789999999999999999999999999888876542 433 89999999999999999999987764
No 70
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.58 E-value=1.4e-07 Score=81.83 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=59.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC-CCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~f-G~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..-+||..+|+-+.+.++...|.+| |.+.++||.+.+ ++ .++|||||+|++++-|+.|-+.||+|-+..
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTG----NSKgYAFVEFEs~eVA~IaAETMNNYLl~e 119 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTG----NSKGYAFVEFESEEVAKIAAETMNNYLLME 119 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccC----CcCceEEEEeccHHHHHHHHHHhhhhhhhh
Confidence 3579999999999999999999999 677788887776 54 444599999999999999999999997664
No 71
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=1.6e-07 Score=86.74 Aligned_cols=60 Identities=20% Similarity=0.442 Sum_probs=54.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG 199 (235)
..+||||++|-..++|.+|++.|-+||+|+++++...+ + ||||+|.+++.|+.|.+.+-.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-----~----CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-----G----CAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-----c----cceeeehhhHHHHHHHHhhcc
Confidence 45899999999999999999999999999999999876 4 999999999999999987533
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.55 E-value=1.9e-07 Score=83.18 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
..+|+|.|||..++++||++||..||.++.+-|-.++.+. +.|.|=|.|...++|+.|++.+||..++.-...+.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~----s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGR----SLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCC----CCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 4789999999999999999999999999999999998543 444999999999999999999999888875554444
Q ss_pred E
Q 026648 212 F 212 (235)
Q Consensus 212 ~ 212 (235)
.
T Consensus 159 i 159 (243)
T KOG0533|consen 159 I 159 (243)
T ss_pred e
Confidence 3
No 73
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.53 E-value=1.1e-07 Score=90.71 Aligned_cols=63 Identities=30% Similarity=0.535 Sum_probs=54.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~L 197 (235)
..+|||+|||+++++++|+++|.+||.|++.+|.... ++++..+||||+|++.++++.||++-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC
Confidence 4569999999999999999999999999999988765 22222269999999999999999873
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.50 E-value=1.6e-07 Score=80.28 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=60.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~v-rl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+.+|||+||.+++.|..|.++|+.||.+.+. +++++. +++++| |+||.|.+.+.+.+|++.+||+-+ |...+
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~----~g~i~~~sfeasd~ai~s~ngq~l--~nr~i 169 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKG----FGFINYASFEASDAAIGSMNGQYL--CNRPI 169 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCC----CeEEechhHHHHHHHHHHhccchh--cCCce
Confidence 3589999999999999999999999998764 667776 444444 999999999999999999999854 34444
Q ss_pred EE
Q 026648 210 VV 211 (235)
Q Consensus 210 ~~ 211 (235)
.+
T Consensus 170 tv 171 (203)
T KOG0131|consen 170 TV 171 (203)
T ss_pred EE
Confidence 44
No 75
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1.1e-07 Score=92.03 Aligned_cols=66 Identities=27% Similarity=0.405 Sum_probs=58.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+..+|+|-|||..|++++|.++|+.||+|++|+.-..+ + | .+||+|.+..+|+.|+++|++.+|-.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~-~----~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---R-G----IVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---C-c----eEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 45799999999999999999999999999997765554 2 4 99999999999999999999887765
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=6e-08 Score=85.05 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
...||||+|+-..++||-|.+||-+-|.|.+|.|+.++....+ ||||+|.++-...-|++.+||.++..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-----Fa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-----FAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-----eeeeecccccchhhhhhhcccchhcc
Confidence 3579999999999999999999999999999999999866555 99999999999999999999998875
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.45 E-value=1.5e-07 Score=86.62 Aligned_cols=73 Identities=23% Similarity=0.364 Sum_probs=62.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHH----hcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA----LQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~----LnG~~i~~~r 206 (235)
..++|||++|++++++|.|++.|++||+|.+|.++.++.. |++++|+||+|++.+....++.. |+|..|+.-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t---~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST---GRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC---CCcccccceecCCCcchheeecccccccCCcccccee
Confidence 3689999999999999999999999999999999999822 34555999999999998888864 7777777644
No 78
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=8.6e-07 Score=83.39 Aligned_cols=69 Identities=26% Similarity=0.429 Sum_probs=62.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..+|||.||+..++.+.|+.+|+.||.|.+++|+.+..+..+| |+||+|.+.++|.+|+..+||..+..
T Consensus 270 ~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG----~gfV~fs~~eeA~~A~~~~n~~~i~~ 338 (369)
T KOG0123|consen 270 GANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKG----FGFVEFSSPEEAKKAMTEMNGRLIGG 338 (369)
T ss_pred ccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccc----eEEEEcCCHHHHHHHHHhhChhhhcC
Confidence 5689999999999999999999999999999999998544444 99999999999999999999987764
No 79
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.35 E-value=9.2e-07 Score=77.50 Aligned_cols=66 Identities=35% Similarity=0.660 Sum_probs=61.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++.+||+.|||.+++.+.|..+|.+|.+.++||++..+. + .|||+|.+...|..|.++|+|.+|..
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~----~----iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS----G----IAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC----c----eeEEecchhhhhHHHhhhhccceecc
Confidence 468999999999999999999999999999999998752 4 99999999999999999999999884
No 80
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.29 E-value=2.3e-06 Score=85.18 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=64.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
.++|||+||++.++|+.|-..|..||.|..|+++.-++---+-....|+||-|-++.+|+.|++.|||..|.....-+.|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 46899999999999999999999999999999987761111112234999999999999999999999877754444433
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=5.7e-07 Score=78.86 Aligned_cols=62 Identities=23% Similarity=0.435 Sum_probs=57.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.+||++||..+.+++|+++|..||.|.+|.+.. | |+||+|++..+|..|+.-|||..+..-+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------g----f~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------G----FGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec-------c----cceeccCchhhhhcccchhcCceeccee
Confidence 699999999999999999999999999888765 3 9999999999999999999999888755
No 82
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=1.1e-06 Score=82.10 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=59.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC--CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE--SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk--~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
-+.|||..+..+.+|+||+.+|+-||+|++|.|.+.. .+|+ | |+|+||.+......||..||=+.+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~Hk-G----yGfiEy~n~qs~~eAiasMNlFDLGG 279 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHK-G----YGFIEYNNLQSQSEAIASMNLFDLGG 279 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCcc-c----eeeEEeccccchHHHhhhcchhhccc
Confidence 4789999999999999999999999999999999998 3333 4 99999999999999999888665543
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.15 E-value=7.3e-06 Score=75.96 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 129 pd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~--------vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
+..++.|||.|||.++|-+|+.++|+++|.|.+ |+|-+++.++.+| =|.+.|--.++.+-|++.|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKG----DaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKG----DALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccC----ceEEEeecccHHHHHHHHhCcc
Confidence 345677999999999999999999999999884 7888888655555 7889999999999999999999
Q ss_pred eEeeeeeceEE
Q 026648 201 SNIICLSNLVV 211 (235)
Q Consensus 201 ~i~~~r~~~~~ 211 (235)
.+..|...|-.
T Consensus 207 ~~rg~~~rVer 217 (382)
T KOG1548|consen 207 ELRGKKLRVER 217 (382)
T ss_pred cccCcEEEEeh
Confidence 88876665543
No 84
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.08 E-value=4.6e-06 Score=73.91 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=61.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
...+||+|+.+.+|-++++..|+.||.|..|.|+.++ .++.+| |+||+|.+.+.++.|+. |+|..|..
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~----~~yvef~~~~~~~~ay~-l~gs~i~~ 169 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKG----FAYVEFSSYELVEEAYK-LDGSEIPG 169 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcce----eEEEecccHhhhHHHhh-cCCccccc
Confidence 3689999999999999999999999999999999998 444444 99999999999999999 89887774
No 85
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.07 E-value=1e-05 Score=79.29 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=59.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+++|||.+|...+.-.+|+.||++||.|+-.+|++.. +.++ .++|+||.+.+.++|.+||+.|+-++|-.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa-RsPG--aRCYGfVTMSts~eAtkCI~hLHrTELHG 474 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA-RSPG--ARCYGFVTMSTSAEATKCIEHLHRTELHG 474 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecC-CCCC--cceeEEEEecchHHHHHHHHHhhhhhhcc
Confidence 4689999999999999999999999999999999885 2222 24599999999999999999887665543
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.03 E-value=2.4e-05 Score=60.73 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~f--G~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
+||-|+|+|...|.++|.+++... |.+.-+.|+.|- ++ -++|||||.|.+++.|.+-.+.++|+++....+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~----~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s 75 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNK----CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS 75 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCC----CceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence 699999999999999999887643 667778888886 32 345599999999999999999999999986554
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.97 E-value=1.5e-05 Score=71.40 Aligned_cols=71 Identities=20% Similarity=0.376 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
+....||.+-|..+++.+.|...|.+|..+...++++++ |.|+++||+||.|.+.+++..|+..|+|.-+.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk---RTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK---RTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccc---cccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 345789999999999999999999999999999999998 33455559999999999999999999998654
No 88
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.86 E-value=4e-05 Score=60.06 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=39.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
..|.|.+++..++.++|+++|++||.|..|.+..... -|||.|.+.+.|+.|++++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---------EEEEEECCcchHHHHHHHHHhc
Confidence 4789999999999999999999999999888877542 7899999999999999877654
No 89
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.78 E-value=1.4e-05 Score=70.12 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=58.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
..+.|+|.||+..+++.+|++.|.++|.+..+.+. + + ++||+|.+.++|.+|++.|+|.++..|...+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~------~-~----~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR------R-N----FAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh------c-c----ccceeehhhhhhhhcchhccchhhcCceeee
Confidence 35789999999999999999999999998554441 2 2 8999999999999999999999999877544
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.66 E-value=0.00016 Score=69.77 Aligned_cols=59 Identities=19% Similarity=0.394 Sum_probs=49.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~ 196 (235)
..-|-+++||+++|++||.++|+.+ .|..+.+.+..++.+ |=|||||.+++++++|+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~s-----GeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPS-----GEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcC-----cceEEEeechHHHHHHHHh
Confidence 3567789999999999999999999 688877776653333 3899999999999999974
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.60 E-value=6.3e-05 Score=73.19 Aligned_cols=76 Identities=24% Similarity=0.399 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
+..+++||++||...++.+++++...||.++..+++.+. .+..+| |||.+|-++.-...|++.|||..+.....-
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg----~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKG----FAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccc----eeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 345789999999999999999999999999999999987 444455 999999999999999999999988754433
Q ss_pred e
Q 026648 209 L 209 (235)
Q Consensus 209 ~ 209 (235)
+
T Consensus 363 v 363 (500)
T KOG0120|consen 363 V 363 (500)
T ss_pred e
Confidence 3
No 92
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.55 E-value=0.00012 Score=69.56 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=56.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeC---CCCCCCCCC-------ceEEEEEecCHHHHHHHHHHhc
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK---ESRHPGGDP-------LILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~d---k~~~~gG~~-------~~faFVeF~s~~~A~~Ai~~Ln 198 (235)
+++||.+.|||.+-.-+.|.+||+.+|.|+.|||..- ...-++..+ +-||+|+|+..+.|.+|.+.|+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 5799999999999999999999999999999998755 211111122 4589999999999999999985
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.54 E-value=0.00027 Score=67.08 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=63.7
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~-~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
+..|.|.||.. .+|.+.|..||+-||.|.+|+|..+|.. -|.|++.+...|+-|++.|+|.++..|...+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd--------~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD--------NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc--------ceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 57899999965 5899999999999999999999998731 68999999999999999999999999877654
Q ss_pred E
Q 026648 211 V 211 (235)
Q Consensus 211 ~ 211 (235)
.
T Consensus 369 ~ 369 (492)
T KOG1190|consen 369 L 369 (492)
T ss_pred e
Confidence 3
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.51 E-value=0.00038 Score=67.17 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=47.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~-vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~ 196 (235)
...|-+++||+.||++||.++|+..--+.. +-|+.++.++++| =|||+|++.+.|++|+..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tG----EAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTG----EAFVQFESQESAEIALGR 164 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCccc----ceEEEecCHHHHHHHHHH
Confidence 357999999999999999999997733223 4566665433444 899999999999999864
No 95
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.40 E-value=0.00033 Score=48.35 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=42.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHH
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai 194 (235)
++|-|.+.+.+..+.-|+ .|.+||+|.++.+.... - +.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~-----~----~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPEST-----N----WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCC-----c----EEEEEECCHHHHHhhC
Confidence 578899999888866555 77789999998887332 1 8999999999999985
No 96
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00032 Score=68.81 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCeEEEcCCCCCCC------HHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCS------RREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vt------eedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.+.|+|.|+|---. ..-|..+|+++|.|..+.++.++ ++ .+| |.|++|.+..+|+.|++.|||++++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG----~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKG----YLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eee----EEEEEecChhhHHHHHHhcccceecc
Confidence 46899999996432 23467889999999999999887 43 333 99999999999999999999999997
Q ss_pred ee-eceEEEEe
Q 026648 205 CL-SNLVVFYQ 214 (235)
Q Consensus 205 ~r-~~~~~~~~ 214 (235)
.- +-+-+|.|
T Consensus 133 nHtf~v~~f~d 143 (698)
T KOG2314|consen 133 NHTFFVRLFKD 143 (698)
T ss_pred cceEEeehhhh
Confidence 43 34445555
No 97
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.19 E-value=0.0026 Score=64.01 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=55.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeE-EEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~-~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+.|=|.|+|++++-+||-++|..|--+- +|++-.... |.+.|=|-|-|+++++|..|..-|++.+|.-
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n 936 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIRN 936 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCcccc
Confidence 3788999999999999999999994433 456555554 4444599999999999999999999999874
No 98
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.11 E-value=0.00015 Score=70.60 Aligned_cols=67 Identities=25% Similarity=0.468 Sum_probs=60.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
.+|+|+--|+...++.+|.++|+.+|.|..|+++.|+ .+..+| .|||+|.+.+....|| +|.|..+.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskg----i~Yvef~D~~sVp~ai-aLsGqrll 246 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKG----IAYVEFCDEQSVPLAI-ALSGQRLL 246 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcc----eeEEEEecccchhhHh-hhcCCccc
Confidence 4789999999999999999999999999999999998 555555 9999999999999998 78888765
No 99
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.09 E-value=0.002 Score=60.11 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=57.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~--------vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
+.||||-+||..+++.+|.+.|.+++.|+. |.|-+++ ..+++++=|.|.|++...|+.||.-+++..+-
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dk---eT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDK---ETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccc---cccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 468999999999999999999999998874 3444444 22455569999999999999999999988665
Q ss_pred e
Q 026648 204 I 204 (235)
Q Consensus 204 ~ 204 (235)
.
T Consensus 143 g 143 (351)
T KOG1995|consen 143 G 143 (351)
T ss_pred C
Confidence 4
No 100
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.04 E-value=0.0012 Score=62.71 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=62.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
+.||...|+|.+++||+|+.+|..-|...+...--. +.++ ++.+.+++.|+|..|+-.++.+.+...-.+.+.
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~--kd~k-----mal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ--KDRK-----MALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--CCcc-----eeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 579999999999999999999999998655443322 2234 999999999999999999999988876566677
Q ss_pred EEec
Q 026648 212 FYQI 215 (235)
Q Consensus 212 ~~~~ 215 (235)
|..+
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 7654
No 101
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.02 E-value=0.0024 Score=48.64 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCCHHH----HHHhhcCCCC-eEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 133 STLFVEGLPSDCSRRE----VAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 133 ~tLfVgNLP~~vteed----L~~lF~~fG~-I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.|||.|||.+..... |++|+..+|+ |.+| .. + .|.|.|.+++.|++|.+.|+|-.+...+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~~------~----tAilrF~~~~~A~RA~KRmegEdVfG~k 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---SG------G----TAILRFPNQEFAERAQKRMEGEDVFGNK 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T------T-----EEEEESSHHHHHHHHHHHTT--SSSS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---eC------C----EEEEEeCCHHHHHHHHHhhcccccccce
Confidence 4699999999998776 5678888976 2222 11 3 8999999999999999999988766533
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.96 E-value=0.0021 Score=62.78 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=51.6
Q ss_pred HHHhhcCCCCeEEEEEeeC-CCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEEEEecc
Q 026648 149 VAHIFRPFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVVFYQIA 216 (235)
Q Consensus 149 L~~lF~~fG~I~~vrl~~d-k~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~~~~~~ 216 (235)
++.-+.+||.|..|.++.. ....+. --+|..||+|.+.+++++|+++|+|.++. .|--+|.+||.-
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~-~G~GkVFVefas~ed~qrA~~~L~GrKF~-nRtVvtsYydeD 492 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPV-PGTGKVFVEFADTEDSQRAMEELTGRKFA-NRTVVASYYDED 492 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcC-CCcccEEEEecChHHHHHHHHHccCceeC-CcEEEEEecCHH
Confidence 4555889999999999988 333221 11347899999999999999999999988 466778899854
No 103
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.89 E-value=0.0076 Score=52.29 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
...+.|.+||..-+++||++...+-|.+.-..+.+| | .+.|+|...++.+-|+.+|+..+..-
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g----~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G----VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c----ceeeeeeehhhHHHHHHhhccccccC
Confidence 367999999999999999999999999888777776 4 88999999999999999999877654
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.84 E-value=0.00083 Score=61.32 Aligned_cols=68 Identities=28% Similarity=0.331 Sum_probs=56.8
Q ss_pred CCeEE-EcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 132 SSTLF-VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 132 ~~tLf-VgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
..++| |++|++++++++|+..|..+|.|..++++.++ ..|...||+||+|.+...+..|+.. +...+.
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~---~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~ 252 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE---ESGDSKGFAYVDFSAGNSKKLALND-QTRSIG 252 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCC---CccchhhhhhhhhhhchhHHHHhhc-ccCccc
Confidence 34555 99999999999999999999999999999988 2245555999999999999999876 555444
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.0049 Score=59.94 Aligned_cols=65 Identities=23% Similarity=0.323 Sum_probs=47.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCce---EEEEEecCHHHHHHHHHH
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLI---LCFVDFVSPAHAATAMDA 196 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~---faFVeF~s~~~A~~Ai~~ 196 (235)
-+++||||+||.+++|++|...|..||.+ .|..+.+......=-++| |+|..|+++...+.=+.+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 35899999999999999999999999985 345443221111112445 999999999888775544
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0036 Score=60.84 Aligned_cols=65 Identities=31% Similarity=0.410 Sum_probs=56.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEeeC-CCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 026648 128 PPDASSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (235)
Q Consensus 128 ppd~~~tLfVgNLP~~vteedL~~lF~-~fG~I~~vrl~~d-k~~~~gG~~~~faFVeF~s~~~A~~Ai~~ 196 (235)
+-|+.+|||||+||.-++-+||..+|. -||.|.-|-|=.| +=|-++| =|=|.|.+...=.+||++
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG----aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG----AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC----cceeeecccHHHHHHHhh
Confidence 446789999999999999999999999 8999999999888 4444555 889999999999999975
No 107
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.75 E-value=0.0091 Score=45.38 Aligned_cols=55 Identities=18% Similarity=0.409 Sum_probs=44.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln 198 (235)
....+|+ +|.+-...||.+||++||.| .|..+.+. -|||...+++.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT----------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT----------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT----------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC----------cEEEEeecHHHHHHHHHHhc
Confidence 4567777 99999999999999999986 67777775 89999999999999998886
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.67 E-value=0.056 Score=51.31 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=63.9
Q ss_pred CCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~-vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
++.+.|-+|... ++-+.|-.||-.||.|++|++++.+. | -|.||..+..+.++|+..||+..+-..+.++|
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----g----tamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----G----TAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----c----eeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 678999999875 45667889999999999999998873 3 89999999999999999999988877667777
Q ss_pred EEEe
Q 026648 211 VFYQ 214 (235)
Q Consensus 211 ~~~~ 214 (235)
+--|
T Consensus 359 ~SkQ 362 (494)
T KOG1456|consen 359 VSKQ 362 (494)
T ss_pred eccc
Confidence 6544
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.67 E-value=0.01 Score=56.31 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=46.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCC----CCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPF----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~f----G~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~ 196 (235)
-.|-.++||+++++.|+.++|.+- +..+.|-++...+++..| =|||.|..+++|+.|+.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTG----dAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTG----DAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCccc----ceEEEecCHHHHHHHHHH
Confidence 356678999999999999999743 345566667665544444 899999999999999864
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.62 E-value=0.0063 Score=57.53 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=51.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHH
Q 026648 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (235)
Q Consensus 129 pd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~ 195 (235)
+.++-.+.|++|-..++|.||-+..+.||.|..|.++..+. .+.|+|++.+.|+.++.
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r---------~alvefedi~~akn~Vn 85 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR---------QALVEFEDIEGAKNCVN 85 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc---------eeeeeeccccchhhhee
Confidence 33466899999999999999999999999999998877652 78999999999999875
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.57 E-value=0.00085 Score=68.36 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=59.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
...|||.|+|+..|.++|+.+|+.+|.+++++++..+.+.++| .+||.|.++.+|.+++...+...+.-
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg----~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKG----KARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccccc----ceeccCCCcchhhhhcccchhhhhhh
Confidence 4579999999999999999999999999999999888644444 99999999999999987766554443
No 112
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.56 E-value=0.0029 Score=59.95 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=59.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEEEE
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVVFY 213 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~~~ 213 (235)
.|-|.||.+.+|.++++.||...|.|.+++|....+....--..-.|||.|.+...+..| +.|.++.+- -+.++|+.|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfv-draliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFV-DRALIVRPY 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceee-eeeEEEEec
Confidence 699999999999999999999999999999987542111111122799999999999888 455665443 255667666
Q ss_pred e
Q 026648 214 Q 214 (235)
Q Consensus 214 ~ 214 (235)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.53 E-value=0.007 Score=47.21 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=50.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeC--------CCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK--------ESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~d--------k~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
.+.|.|=+.|.. ....|-+.|++||.|++..-..+ ..-..+. +-.|.|+++.+|++||+. ||..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~N----Wi~I~Y~~~~~A~rAL~~-NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGN----WIHITYDNPLSAQRALQK-NGTIFS 79 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTT----EEEEEESSHHHHHHHHTT-TTEEET
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCC----EEEEECCCHHHHHHHHHh-CCeEEc
Confidence 467888889988 55567788999999988751111 1000112 999999999999999976 898887
Q ss_pred eeeeceEEEEec
Q 026648 204 ICLSNLVVFYQI 215 (235)
Q Consensus 204 ~~r~~~~~~~~~ 215 (235)
......|...+.
T Consensus 80 g~~mvGV~~~~~ 91 (100)
T PF05172_consen 80 GSLMVGVKPCDP 91 (100)
T ss_dssp TCEEEEEEE-HH
T ss_pred CcEEEEEEEcHH
Confidence 655554555543
No 114
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.34 E-value=0.0069 Score=56.63 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=53.9
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHhhcCCCCeEEEEEeeCC-CCCCCCCCceE-EEEEecCHHHHHHHHHHhcCceEe
Q 026648 132 SSTLFVEGLPSDCSRRE----V--AHIFRPFVGYKEVRLVSKE-SRHPGGDPLIL-CFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 132 ~~tLfVgNLP~~vteed----L--~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~f-aFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
.+-+||-+||..+..|+ | .+.|.+||.|++|.|-++. .-...- . .+ .||.|.+.++|++||...+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~-~-h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTA-S-HAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccccccccccc-c-cceEEEEecchHHHHHHHHHhcccccc
Confidence 46799999999988887 3 3789999999998776554 111110 0 12 499999999999999999988777
Q ss_pred e
Q 026648 204 I 204 (235)
Q Consensus 204 ~ 204 (235)
.
T Consensus 192 G 192 (480)
T COG5175 192 G 192 (480)
T ss_pred C
Confidence 5
No 115
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.00 E-value=0.006 Score=54.94 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=58.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHh--cCceEeeeeece
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL--QGQSNIICLSNL 209 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~L--nG~~i~~~r~~~ 209 (235)
..|||.||+..++.+.|.+-|+.||.|....++.|..+...+ =++|+|...-.|.+|+..+ .|+-+..|...+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~----eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~ 106 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR----EGIVEFAKKPNARKAARRCREGGFGGTTGGRPV 106 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc----cchhhhhcchhHHHHHHHhccCccccCCCCCcc
Confidence 579999999999999999999999999987777776332323 6799999999999999887 555555555444
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.77 E-value=0.055 Score=50.70 Aligned_cols=81 Identities=14% Similarity=0.258 Sum_probs=62.0
Q ss_pred CCCeEEEcCC----CCCCC-------HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 026648 131 ASSTLFVEGL----PSDCS-------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199 (235)
Q Consensus 131 ~~~tLfVgNL----P~~vt-------eedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG 199 (235)
..+||.++|+ -++.+ +++|.+-.++||.|.+|.|--. ++.| .+-|.|.+.++|..||+.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdG----vvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDG----VVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCc----eeEEEeCChHHHHHHHHHhcC
Confidence 4589999998 23444 4456666999999999876533 3446 999999999999999999999
Q ss_pred ceEeeeeeceEEEEeccccc
Q 026648 200 QSNIICLSNLVVFYQIACEY 219 (235)
Q Consensus 200 ~~i~~~r~~~~~~~~~~~~~ 219 (235)
.-++ .|-+....+|....+
T Consensus 337 R~fd-gRql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 337 RWFD-GRQLTASIWDGKTKF 355 (382)
T ss_pred eeec-ceEEEEEEeCCccee
Confidence 8776 466777788865443
No 117
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.72 E-value=0.0074 Score=59.79 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCe-EEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee-e
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL-S 207 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I-~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r-~ 207 (235)
..++.|+|.||-.-.|.-+|+.|+.+-|++ .+. -.|+=+. -|||.|.+.++|...+.+|+|.++-... .
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIKS-------hCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIKS-------HCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhhc-------ceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 367899999999999999999999965554 343 2333111 6999999999999999999999988866 4
Q ss_pred ceEEEEe
Q 026648 208 NLVVFYQ 214 (235)
Q Consensus 208 ~~~~~~~ 214 (235)
.||..|+
T Consensus 513 ~L~adf~ 519 (718)
T KOG2416|consen 513 HLIADFV 519 (718)
T ss_pred eeEeeec
Confidence 6677776
No 118
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.54 E-value=0.047 Score=39.12 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCC---CCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPF---VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~f---G~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~L 197 (235)
.+|+|+++. +.+.++|+..|..| ....+|..+.|. -|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 589999985 58888999999988 234588888886 5789999999999999875
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.31 E-value=0.0034 Score=64.50 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++.|||++||+..+++.+|+..|..+|.|.+|.|-..+ +.-.. |+||.|.+...+-.|...+.+..|.-
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa-----~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESA-----YAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccc-----hhhhhhhccccCcccchhhcCCcccc
Confidence 56899999999999999999999999999999987775 22222 99999999999999999988876654
No 120
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.00 E-value=0.015 Score=52.34 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=58.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-C----CCC-CCC-CceE--EEEEecCHHHHHHHHHHhcCceEe
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-S----RHP-GGD-PLIL--CFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~----~~~-gG~-~~~f--aFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
..||+++||+.+...-|++||++||.|-+|.|.+.. . +.+ +|. ..-| |.|||.+...|....+.|||..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 579999999999999999999999999999998765 2 111 111 1123 579999999999999999999988
Q ss_pred e
Q 026648 204 I 204 (235)
Q Consensus 204 ~ 204 (235)
.
T Consensus 155 g 155 (278)
T KOG3152|consen 155 G 155 (278)
T ss_pred C
Confidence 6
No 121
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.66 E-value=0.032 Score=53.61 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=45.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQS 201 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~ 201 (235)
++||++||...++..+|+.+|...---.+-.++.+. | |+||...+...|.+|++.|+|+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-----g----yafvd~pdq~wa~kaie~~sgk~ 61 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-----G----YAFVDCPDQQWANKAIETLSGKV 61 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-----c----eeeccCCchhhhhhhHHhhchhh
Confidence 479999999999999999999854110011111111 4 99999999999999999988764
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.64 E-value=0.074 Score=50.63 Aligned_cols=67 Identities=16% Similarity=0.334 Sum_probs=54.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCC-eE--EEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVG-YK--EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSN 202 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~-I~--~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i 202 (235)
...|-+++||++.+.|+|-++|..|-. |. -|.++.+..+++.| =|||+|.+.+.|..|....+.+..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG----eAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG----EAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh----hhhhhhhhhHHHHHHHHHHHHhhc
Confidence 467999999999999999999998854 22 27777776544444 899999999999999988776655
No 123
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.40 E-value=0.54 Score=37.21 Aligned_cols=73 Identities=10% Similarity=0.139 Sum_probs=54.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG-~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
..+.+-..|.-++-++|..+.+++- .|..+||+++...++ ..+.+.|.+.+.|..-.+.+||+.+.-....+|
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnr-----ymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~C 87 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNR-----YMVLIKFRDQESADEFYEEFNGKPFNSLEPETC 87 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCce-----EEEEEEECCHHHHHHHHHHhCCCccCCCCCcee
Confidence 3455566666677777877777664 466789998864333 378999999999999999999999877666554
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.37 E-value=0.0042 Score=63.46 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=53.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
.++||.||+..+.+++|...|.++|.+..+++.--+ . ++.+|.|||+|..+++|.+|+.-..+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~----~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNE----KRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhc----cccccceeeEeecCCchhhhhhhhhhh
Confidence 679999999999999999999999999988877332 2 344459999999999999999866544
No 125
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.29 E-value=0.14 Score=43.55 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=46.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcC-CCCe---EEEEEeeCCCCCCCCCCc-eEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRP-FVGY---KEVRLVSKESRHPGGDPL-ILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~-fG~I---~~vrl~~dk~~~~gG~~~-~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
...+|.|++||+..||+++.+.+++ ++.- ..+.-..... .-..+. --|||.|.+.+++..-.+.++|+.+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~--~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKK--SFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-S--SSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCc--cCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3579999999999999999998887 6665 3333112220 111111 258999999999999999999987654
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.95 E-value=0.11 Score=53.82 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++.++|++|+.-+....|...|..||.|..|.+-.. ++ |++|.|++...|+.|+..|-|..+..
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-------q~--yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-------QP--YAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-------Cc--ceeeecccCccchhhHHHHhcCcCCC
Confidence 578999999999999999999999999988665433 22 99999999999999999999998877
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.83 E-value=0.1 Score=52.88 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=52.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 026648 126 PLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (235)
Q Consensus 126 ~~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~-vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~ 196 (235)
+.|-.+...|||..||..+++.++-..|..--.|++ |.|....+....+ -|||+|..++++.+|...
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~----~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRP----AAFVAFIHPTAPLTASSV 495 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccc----hhhheeccccccchhhhc
Confidence 355567889999999999999999999998877776 6666555333333 899999999888888643
No 128
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.86 E-value=0.11 Score=49.12 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=55.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG--~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
.-.+||+||-+.+|++||-+....-| .|.++++...+ + |+++|||.|...+....++-++.|--..|.. ...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~N----GQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG-Q~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTN----GQSKGYALLVLNSDAAVKQTMEILPTKTIHG-QSP 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccC----CcccceEEEEecchHHHHHHHHhcccceecC-CCC
Confidence 35699999999999999988877654 35556666555 4 4555599999999999999999887666553 444
Q ss_pred eEE
Q 026648 209 LVV 211 (235)
Q Consensus 209 ~~~ 211 (235)
+++
T Consensus 155 ~V~ 157 (498)
T KOG4849|consen 155 TVL 157 (498)
T ss_pred eee
Confidence 443
No 129
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=91.65 E-value=0.057 Score=48.62 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=44.7
Q ss_pred HHHHhhc-CCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee--eceEEEEecc
Q 026648 148 EVAHIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL--SNLVVFYQIA 216 (235)
Q Consensus 148 dL~~lF~-~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r--~~~~~~~~~~ 216 (235)
+|..-|+ +||+|+++.|-..-.-+-.| =++|.|...++|++|++.|||--+..-. .++|-++++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~G----NVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVG----NVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhh----hhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 3333344 89999998665554434334 7899999999999999999987666522 2445555543
No 130
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.22 E-value=0.13 Score=53.17 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=58.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+.++.|.+-..+..-|..||+.||.+.+.+..++-. .|.|+|.+.+.|..|+++|+|.++-+.....
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps 366 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------MALVSFSSVESAILALDALQGKEVSVTGAPS 366 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc---------chhhhhHHHHHHHHhhhhhcCCcccccCCce
Confidence 456667788889999999999999999999887752 8999999999999999999999998876544
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.63 E-value=0.16 Score=47.28 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=54.2
Q ss_pred CCeEEEcCCCCCCCHHHH-H--HhhcCCCCeEEEEEeeCCC--CCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREV-A--HIFRPFVGYKEVRLVSKES--RHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL-~--~lF~~fG~I~~vrl~~dk~--~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.+-+||-+|+.....+++ + +.|.+||.|.+|.+-.+.. ...++ ..-++|.|+..++|..||...+|+.++.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~--~~s~yITy~~~eda~rci~~v~g~~~dg 152 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG--TCSVYITYEEEEDADRCIDDVDGFVDDG 152 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC--CCcccccccchHhhhhHHHHhhhHHhhh
Confidence 357899999988766654 3 6799999999998887662 22222 1126999999999999999999987775
No 132
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.25 E-value=0.78 Score=45.67 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=52.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcC--CCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHh-------cCce
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRP--FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-------QGQS 201 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~--fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~L-------nG~~ 201 (235)
..+.+.++-||..+-.|+++-||+. +..+.+|.+.... ==||.|++..+|+.|.+.| +|+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3567888999999999999999985 6788888887765 2599999999999998754 5765
Q ss_pred Ee
Q 026648 202 NI 203 (235)
Q Consensus 202 i~ 203 (235)
|.
T Consensus 244 Im 245 (684)
T KOG2591|consen 244 IM 245 (684)
T ss_pred hh
Confidence 54
No 133
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.22 E-value=0.61 Score=47.02 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=51.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
..++||+|+...+.++-++.+...+|-|.+++.+ + |+|.+|..+..+..|+..|+-..++
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--~----------fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--K----------FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--h----------hcccchhhHHHHHHHHHHhcccCCC
Confidence 5799999999999999999999999987665432 2 8999999999999999988765554
No 134
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=88.83 E-value=1.4 Score=36.79 Aligned_cols=63 Identities=25% Similarity=0.294 Sum_probs=43.9
Q ss_pred CCCCCCeEEEcCCC-----CCCCHH----HHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 026648 128 PPDASSTLFVEGLP-----SDCSRR----EVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 128 ppd~~~tLfVgNLP-----~~vtee----dL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln 198 (235)
||| .||.|.=+. ...-.+ +|-+.|.+||.+.=||++-+ .-.|.|.+-+.|.+|++ |+
T Consensus 25 PpD--aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaals-~d 90 (146)
T PF08952_consen 25 PPD--ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAALS-LD 90 (146)
T ss_dssp -TT---EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHHH-GC
T ss_pred CCC--ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHHc-cC
Confidence 444 477776555 122233 67788999999888888865 46899999999999985 58
Q ss_pred CceEee
Q 026648 199 GQSNII 204 (235)
Q Consensus 199 G~~i~~ 204 (235)
|.+|..
T Consensus 91 g~~v~g 96 (146)
T PF08952_consen 91 GIQVNG 96 (146)
T ss_dssp CSEETT
T ss_pred CcEECC
Confidence 888765
No 135
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.26 E-value=1.3 Score=41.06 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=47.0
Q ss_pred HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEEEEe
Q 026648 146 RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVVFYQ 214 (235)
Q Consensus 146 eedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~~~~ 214 (235)
++++++-+++||.|..|-|-...+. + -+-..=-||+|+..++|.+|+--|||.-+.. |.--.+||+
T Consensus 300 ede~keEceKyg~V~~viifeip~~-p-~deavRiFveF~r~e~aiKA~VdlnGRyFGG-r~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQ-P-EDEAVRIFVEFERVESAIKAVVDLNGRYFGG-RVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCC-c-cchhheeeeeeccHHHHHHHHHhcCCceecc-eeeeheecc
Confidence 3467788999999999877665511 0 0111246999999999999999999986664 544455665
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=87.63 E-value=0.74 Score=45.51 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=50.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc----------------------------CCCCeEEEEEeeCC-CCCCCCCCceEEEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFR----------------------------PFVGYKEVRLVSKE-SRHPGGDPLILCFV 182 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~----------------------------~fG~I~~vrl~~dk-~~~~gG~~~~faFV 182 (235)
.+++-|+|+|..-++.+|..+.. ..|...-+.|+.|- .+.- +|||||
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcN----vGYAFI 436 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCN----VGYAFI 436 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccc----cceeEE
Confidence 45677777776666666655532 35666667788776 3333 349999
Q ss_pred EecCHHHHHHHHHHhcCceEee
Q 026648 183 DFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 183 eF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
-|.+++.+..+.+++||++.+.
T Consensus 437 Nm~sp~ai~~F~kAFnGk~W~~ 458 (549)
T KOG4660|consen 437 NMTSPEAIIRFYKAFNGKKWEK 458 (549)
T ss_pred eecCHHHHHHHHHHHcCCchhh
Confidence 9999999999999999998775
No 137
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.18 E-value=4 Score=29.47 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=42.4
Q ss_pred CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 143 DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 143 ~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
.++-++++..+..|.- .+|..+++ | =||.|.+.++|+++.+..+|..+-.++.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t----G-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT----G-----FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC----E-----EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 5678899999999953 34456653 3 3899999999999999999999887663
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.32 E-value=1.9 Score=41.93 Aligned_cols=74 Identities=15% Similarity=0.273 Sum_probs=61.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC-CCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~f-G~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
++.|+|=-+|..+|-.||-.+...| -.|..+++++|....+ -...|.|.+.++|..-.+.+||..+.-....+|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnr-----ymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~C 148 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNR-----YMVLIKFRDQADADTFYEEFNGKQFNSLEPEVC 148 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCce-----EEEEEEeccchhHHHHHHHcCCCcCCCCCccce
Confidence 6899999999999999999887765 5688899999764333 268999999999999999999998876555443
No 139
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=84.89 E-value=1.5 Score=36.74 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCCC-HHHHH---HhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 132 SSTLFVEGLPSDCS-RREVA---HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 132 ~~tLfVgNLP~~vt-eedL~---~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
-.||.|+=|..++. .+||+ .-.+.||.|++|.+--.. -|.|.|.+...|=.|+.+++..
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcCC
Confidence 36899988777664 34444 557789999998865433 7999999999999999999863
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=82.34 E-value=1.2 Score=40.82 Aligned_cols=70 Identities=21% Similarity=0.093 Sum_probs=56.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..+++||+++...+.+.+...++...|....+.+...+ ....+| ++.|.|...+++..|+.....+.++.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~----~~s~~f~~ks~~~~~l~~s~~~~~~~ 157 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKG----GLSVHFAGKSQFFAALEESGSKVLDG 157 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhcccccccc----ceeeccccHHHHHHHHHhhhcccccc
Confidence 46799999999999999999999999988887776654 222234 99999999999999998766544444
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.05 E-value=3.1 Score=38.67 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=47.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
..|=|=++|..... -|..+|++||+|++.... .++ . |-+|.|.++.+|.+||.. ||+.|+.-.+
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~--~ng---N----wMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP--SNG---N----WMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhCeeeeeecC--CCC---c----eEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 44555566665544 356789999999876555 222 2 999999999999999987 8888886443
No 142
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=74.89 E-value=6.4 Score=33.85 Aligned_cols=53 Identities=21% Similarity=0.105 Sum_probs=40.1
Q ss_pred CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhc--CceEeeee
Q 026648 145 SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--GQSNIICL 206 (235)
Q Consensus 145 teedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln--G~~i~~~r 206 (235)
..+.|+++|..++.+.+....+.-. =..|.|.+.+.|+.|...|+ ++.+...+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr---------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~ 62 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR---------RIRVVFESPESAQRARQLLHWDGTSFNGKR 62 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT---------EEEEE-SSTTHHHHHHHTST--TSEETTEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC---------EEEEEeCCHHHHHHHHHHhcccccccCCCc
Confidence 4578999999999998887776542 46899999999999999999 77776544
No 143
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.26 E-value=14 Score=37.21 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=57.7
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhcCC----CCeEEEEEeeCC-CCCC------CCC-----------------------
Q 026648 131 ASSTLFVEGLPSD-CSRREVAHIFRPF----VGYKEVRLVSKE-SRHP------GGD----------------------- 175 (235)
Q Consensus 131 ~~~tLfVgNLP~~-vteedL~~lF~~f----G~I~~vrl~~dk-~~~~------gG~----------------------- 175 (235)
.++.|=|-|+.++ +.-++|--+|+.| |.|.+|.|-+.. ++.+ .|-
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4678999999986 7888999999887 689999987554 2211 011
Q ss_pred -------------C-ceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 176 -------------P-LILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 176 -------------~-~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
. -.||.|+|.+.+.|....+..+|..+.-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 1 2579999999999999999999998873
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=69.92 E-value=0.56 Score=42.56 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=54.7
Q ss_pred CCCCCCC---CCCCccCCCccccccCCcCCCcccCcccccchhhhhhcCC--CcCCCCC-CCCCcccCCCCCCCCCCCCc
Q 026648 26 PRTDYDV---PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRI 99 (235)
Q Consensus 26 ~~~d~~~---~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~y~~~~~--~~s~~~g-~~~r~~gGg~~G~~~~~r~~ 99 (235)
+..||-| ++++||+|-++--.|+ .|++.-.+|+|.++-+ ..+++ |+||.+- +..|+|- +|+|.....|.+
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~-Kfpsf~~akviRdkRT--gKSkgygfVSf~~pad~~rAmr-em~gkyVgsrpi 262 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFK-KFPSFQKAKVIRDKRT--GKSKGYGFVSFRDPADYVRAMR-EMNGKYVGSRPI 262 (290)
T ss_pred ccccceeecccccccccHHHHHHHHH-hccchhhccccccccc--cccccceeeeecCHHHHHHHHH-hhcccccccchh
Confidence 3457777 8999999988877665 4888889999998877 47776 7888774 5567887 899888877654
No 145
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.88 E-value=2.8 Score=33.37 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=29.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHH
Q 026648 134 TLFVEGLPSD---------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (235)
Q Consensus 134 tLfVgNLP~~---------vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~ 189 (235)
++.|-|+|.+ .+.++|++.|+.|..+ +|+...++.++++ ++.|+|..--.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~gh~g-----~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQGHTG-----FAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTEEEE-----EEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCCCcE-----EEEEEECCChH
Confidence 6777788654 3567899999999876 5777777766654 99999987433
No 146
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=63.12 E-value=14 Score=30.46 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=46.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG 199 (235)
.....+++.+++..++..++..+|..+|.+..+.+....... .+..+.++.+.....+..+......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGK---IPKSRSFVGNEASKDALESNSRGNK 289 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCCCc---ccccccccchhHHHhhhhhhccccc
Confidence 346789999999999999999999999999877777665221 1122445555555555555544333
No 147
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.25 E-value=1.5 Score=43.61 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
++|||+|++++++-.+|..+++.+..+.++-+-..- .+.-.- +..|.|.--..-..|+.+||+..+.-|
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r----~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFER----RLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHH----HhhHhhccccchHHHHHHhhhcccccc
Confidence 679999999999999999999999998887665443 111111 568889888888888889999877754
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=57.67 E-value=2.3 Score=40.82 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
..||+|.+|+..+-..++-++|..+|++...++..+.... +|-|+|........|++. +|....
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~-------~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSS-------SCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCc-------chhhhHhhhhhHHHHHHh-cchhhh
Confidence 4789999999999999999999999998887776654221 777999988888888765 555444
No 149
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=56.48 E-value=7.8 Score=35.96 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=47.4
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHhhcCCCCeEEEEEeeC-C-----CCCCCC-CCceEE---------EEE
Q 026648 132 SSTLFVEGLPSD------------CSRREVAHIFRPFVGYKEVRLVSK-E-----SRHPGG-DPLILC---------FVD 183 (235)
Q Consensus 132 ~~tLfVgNLP~~------------vteedL~~lF~~fG~I~~vrl~~d-k-----~~~~gG-~~~~fa---------FVe 183 (235)
..||++.+||-. -+++-|+..|..||.|..|.|+.- + ++...| +-.||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 358898888842 467789999999999999887632 1 222212 122243 345
Q ss_pred ecCHHHHHHHHHHhcCceEee
Q 026648 184 FVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 184 F~s~~~A~~Ai~~LnG~~i~~ 204 (235)
|-.-..-..|+.+|.|.++-.
T Consensus 229 fmeykgfa~amdalr~~k~ak 249 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAK 249 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHh
Confidence 555556677888888876543
No 150
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=55.64 E-value=3.1 Score=37.20 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=55.0
Q ss_pred CCeEEEcC----CCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceE
Q 026648 132 SSTLFVEG----LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSN 202 (235)
Q Consensus 132 ~~tLfVgN----LP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i 202 (235)
..+++.|+ |...++++.+.+.|+.-+.+..+|+..+.+ |+++.++||.+.-....-.|+...++..+
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d----~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND----GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc----CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 36788898 889999999999999999999999999884 22333899999888888888887776543
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=53.53 E-value=0.83 Score=44.25 Aligned_cols=68 Identities=12% Similarity=0.212 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.++++=|+|+|....++-|..|..+||.++.|..+....... ..=|.|.+.+.+..||..|||..+..
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta------vvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA------VVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH------HHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 467899999999999999999999999999987765542111 23478999999999999999987763
No 152
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=49.15 E-value=58 Score=23.28 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=34.7
Q ss_pred eEEE-cCCCCCCCHHHHHHhhcCCCCeE-----EEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 134 TLFV-EGLPSDCSRREVAHIFRPFVGYK-----EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 134 tLfV-gNLP~~vteedL~~lF~~fG~I~-----~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+||| -+=-..++..+|-.++..-++|. .|+|..+ |+||+-... .|+.++++|++.++..
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~~-~a~~v~~~l~~~~~~g 66 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPEE-VAEKVLEALNGKKIKG 66 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-TT--HHHHHHHHTT--SSS
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECHH-HHHHHHHHhcCCCCCC
Confidence 3444 23345678888888888776654 4555543 899987654 7888999999888775
No 153
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=48.86 E-value=40 Score=31.46 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=36.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHH
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA 190 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A 190 (235)
.+-|+|+|||.++.-.||+.-+.+-+. .-.+|-++ ++.+ -||..|.+...+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswk--g~~~-----k~flh~~~~~~~ 380 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWK--GHFG-----KCFLHFGNRKGV 380 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCC-CceeEeee--cCCc-----ceeEecCCccCC
Confidence 356999999999999999988877643 23344433 3333 799999886543
No 154
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=47.93 E-value=10 Score=32.90 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=53.0
Q ss_pred CeEEEcCCCCCCCH-----HHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 133 STLFVEGLPSDCSR-----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 133 ~tLfVgNLP~~vte-----edL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
+++++.+++.++-. ...+.||.+|-+..-.++.+.. + ..-|.|.+++.|+.|.-.++.+.+..-..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf-----r----rvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF-----R----RVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh-----c----eeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 57899998876522 2345677777655444555443 1 55689999999999999999998887655
Q ss_pred ceEEEEecc
Q 026648 208 NLVVFYQIA 216 (235)
Q Consensus 208 ~~~~~~~~~ 216 (235)
+-+.|.|.+
T Consensus 82 ~k~yfaQ~~ 90 (193)
T KOG4019|consen 82 LKLYFAQPG 90 (193)
T ss_pred EEEEEccCC
Confidence 667777743
No 155
>PF14893 PNMA: PNMA
Probab=45.37 E-value=17 Score=34.10 Aligned_cols=49 Identities=27% Similarity=0.619 Sum_probs=31.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc----CCCCeEEEEEeeC---CCCCCCCCCceEEEEEecCHH
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFR----PFVGYKEVRLVSK---ESRHPGGDPLILCFVDFVSPA 188 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~----~fG~I~~vrl~~d---k~~~~gG~~~~faFVeF~s~~ 188 (235)
-+.|.|.++|.+|++.|+++... +.|.+ +|... +.-..+ -++|+|...-
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~y---rvl~~~f~~~~~~~-----aalve~~e~~ 73 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRY---RVLGKMFRREENAK-----AALVEFAEDV 73 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccc---eehhhHhhhhcccc-----eeeeeccccc
Confidence 46799999999999999987754 45543 43332 111122 5778776543
No 156
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=41.38 E-value=37 Score=24.33 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHhhcCCCCeEEEEEeeCC
Q 026648 147 REVAHIFRPFVGYKEVRLVSKE 168 (235)
Q Consensus 147 edL~~lF~~fG~I~~vrl~~dk 168 (235)
.+|++.|++.|.|.-+.+-.-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 4789999999999887765544
No 157
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=36.81 E-value=1.3e+02 Score=20.05 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=41.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCH----HHHHHHHHH
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP----AHAATAMDA 196 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~----~~A~~Ai~~ 196 (235)
||.|.|+.-.--...++..+....+|.++.+-... + -.-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-----~----~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-----K----TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-----T----EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-----C----EEEEEEecCCCCHHHHHHHHHH
Confidence 57788888888888999999999999999886664 2 677888754 555556655
No 158
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=28.43 E-value=40 Score=33.32 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=46.9
Q ss_pred CCeEEEcCCCCCC-CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHH----HhcCceEeeee
Q 026648 132 SSTLFVEGLPSDC-SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD----ALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~v-teedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~----~LnG~~i~~~r 206 (235)
.+.|=+.-.|+.. +.++|...|.+||.|..|.+-.... -|.|.|.+..+|-+|.. -|+|.-|++-+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~---------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL---------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh---------hheeeeeccccccchhccccceecCceeEEEE
Confidence 4567777777776 5678999999999999887655411 47899999999955542 35555555433
No 159
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=26.60 E-value=43 Score=25.52 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhh
Q 026648 132 SSTLFVEGLPSDCSRREVAHIF 153 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF 153 (235)
.+||-|.|||....+++|++..
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 4799999999999999999764
No 160
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.50 E-value=36 Score=30.78 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=27.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR 163 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vr 163 (235)
..+||+-|+|..+|++.|.++.++.|.+.++-
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 56899999999999999999999988665544
No 161
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.80 E-value=1.4e+02 Score=29.25 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=43.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~-I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~ 196 (235)
..|=|-++|...-.+||-.+|..|++ =-+|+.+-+. -+|-.|.+...|..|+-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecchHHHHHHhhc
Confidence 56888999999999999999999954 1245555554 789999999999999855
No 162
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=25.32 E-value=1.7e+02 Score=20.49 Aligned_cols=34 Identities=18% Similarity=-0.006 Sum_probs=23.1
Q ss_pred EEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 026648 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 161 ~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln 198 (235)
.|..-..+-+..+. .-...|.+.++|.++++.+-
T Consensus 30 ~v~~~wGRiG~~Gq----~~~~~~~s~~~A~~~~~k~~ 63 (74)
T cd07996 30 SLVRRWGRIGTKGQ----SRTKTFDSEEEALKAAEKLI 63 (74)
T ss_pred EEEEEECCCCCCCc----eEEEECCCHHHHHHHHHHHH
Confidence 34444555334444 66788999999999988763
No 163
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.27 E-value=41 Score=21.57 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=10.6
Q ss_pred CCCCHHHHHHhhcCCC
Q 026648 142 SDCSRREVAHIFRPFV 157 (235)
Q Consensus 142 ~~vteedL~~lF~~fG 157 (235)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998764
No 164
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.02 E-value=2.4e+02 Score=23.81 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=38.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCC---CCeEEEEEeeCCCC-------CCCCCCceEEEEEecCHHH
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPF---VGYKEVRLVSKESR-------HPGGDPLILCFVDFVSPAH 189 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~f---G~I~~vrl~~dk~~-------~~gG~~~~faFVeF~s~~~ 189 (235)
.+|++.-++..++|++.+++-+.= +.+++|+|.+.+.. ..+-...-|-+|.|++-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 689999999999999998887754 56777777654311 0000012288899987543
No 165
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=22.83 E-value=1.7e+02 Score=27.24 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCC---CC-CCCceEEEEEecCHHHHHH
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH---PG-GDPLILCFVDFVSPAHAAT 192 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~---~g-G~~~~faFVeF~s~~~A~~ 192 (235)
.+.|...|+..+++=-++-.-|-+||.|++|.|+.+.... .- -+......+.|-+++.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 4679999999999888889999999999999999876100 00 0122367889999877655
No 166
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.23 E-value=86 Score=28.47 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=26.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVS 166 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~ 166 (235)
....|+|||+++|..-|..++...-.+....++.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 4688999999999999999998765554444443
No 167
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.63 E-value=1.6e+02 Score=22.09 Aligned_cols=56 Identities=7% Similarity=0.096 Sum_probs=38.4
Q ss_pred EEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 026648 135 LFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (235)
Q Consensus 135 LfVgNLP~~vteedL~~lF~~f--G~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~ 196 (235)
-|+=-.+.+.+..++++.++.. -.|.+|+....+.+-+ =|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K------KA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK------KAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE------EEEEEeCCCCcHHHHHHh
Confidence 4444567888888888777765 4567777666653322 399999998888776443
No 168
>PRK11901 hypothetical protein; Reviewed
Probab=21.43 E-value=1.2e+02 Score=28.47 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=36.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCc-eEEEEEecCHHHHHHHHHHhc
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPL-ILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~-~faFVeF~s~~~A~~Ai~~Ln 198 (235)
.||=+-. -.+++.|+.+-.+.+ +..+++...+ +.|++- ..-+=+|.+.++|..|++.|-
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~---RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETK---RDGKPWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEE---ECCceEEEEEecCcCCHHHHHHHHHhCC
Confidence 3444443 355788888877774 4566666554 123322 112336999999999998774
Done!