Query 026648
Match_columns 235
No_of_seqs 241 out of 1243
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 18:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 1.4E-18 4.8E-23 131.8 9.6 72 132-206 19-90 (99)
2 2e5h_A Zinc finger CCHC-type a 99.8 9.6E-18 3.3E-22 123.9 12.0 73 131-207 15-88 (94)
3 3s8s_A Histone-lysine N-methyl 99.7 7.8E-18 2.7E-22 130.3 10.3 76 132-210 6-81 (110)
4 4f25_A Polyadenylate-binding p 99.7 5.4E-18 1.8E-22 131.2 8.3 70 132-206 5-74 (115)
5 2khc_A Testis-specific RNP-typ 99.7 4.8E-17 1.6E-21 125.3 13.5 72 131-206 39-111 (118)
6 2dnz_A Probable RNA-binding pr 99.7 2.6E-17 8.8E-22 121.8 10.9 72 131-206 4-76 (95)
7 2cq3_A RNA-binding protein 9; 99.7 5.5E-17 1.9E-21 122.1 12.7 72 131-207 14-85 (103)
8 1x4e_A RNA binding motif, sing 99.7 1.2E-17 4.1E-22 121.4 8.6 70 131-204 4-74 (85)
9 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.5E-17 5.1E-22 121.0 9.1 73 131-207 5-78 (87)
10 1x4a_A Splicing factor, argini 99.7 4.1E-17 1.4E-21 124.2 11.8 70 131-206 21-90 (109)
11 2dnh_A Bruno-like 5, RNA bindi 99.7 2.9E-17 1E-21 123.8 10.8 80 131-214 14-95 (105)
12 2cqc_A Arginine/serine-rich sp 99.7 1.7E-17 5.9E-22 122.6 9.3 73 130-205 13-85 (95)
13 2cq0_A Eukaryotic translation 99.7 2.9E-17 9.9E-22 123.6 10.6 72 131-206 14-86 (103)
14 2do4_A Squamous cell carcinoma 99.7 3.8E-17 1.3E-21 122.4 11.1 72 131-206 16-87 (100)
15 2ywk_A Putative RNA-binding pr 99.7 1E-17 3.4E-22 124.0 7.8 71 131-205 15-85 (95)
16 2dgv_A HnRNP M, heterogeneous 99.7 3E-17 1E-21 120.8 10.2 73 131-208 7-79 (92)
17 1x5u_A Splicing factor 3B subu 99.7 3.3E-17 1.1E-21 123.6 10.4 72 130-205 13-85 (105)
18 2dnm_A SRP46 splicing factor; 99.7 2.2E-17 7.4E-22 124.4 9.3 72 131-206 12-84 (103)
19 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.5E-17 8.5E-22 119.3 9.2 72 131-206 6-78 (85)
20 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.8E-17 1.6E-21 122.4 11.1 71 131-206 14-84 (103)
21 2la6_A RNA-binding protein FUS 99.7 2.7E-17 9.1E-22 123.2 9.5 76 127-205 8-91 (99)
22 2do0_A HnRNP M, heterogeneous 99.7 5.8E-17 2E-21 123.9 11.5 71 131-205 14-84 (114)
23 2cpz_A CUG triplet repeat RNA- 99.7 3.3E-17 1.1E-21 125.9 10.1 72 131-206 24-96 (115)
24 2d9p_A Polyadenylate-binding p 99.7 4.3E-17 1.5E-21 122.7 10.4 71 130-205 13-83 (103)
25 2cq1_A PTB-like protein L; RRM 99.7 6.5E-17 2.2E-21 123.9 11.5 64 131-203 14-79 (101)
26 3ulh_A THO complex subunit 4; 99.7 3.7E-17 1.3E-21 123.6 10.0 76 130-209 27-102 (107)
27 3r27_A HnRNP L, heterogeneous 99.7 3.7E-17 1.3E-21 125.9 9.9 72 131-211 20-91 (100)
28 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.4E-17 1.2E-21 122.9 9.4 76 131-210 11-87 (102)
29 1whw_A Hypothetical protein ri 99.7 5.2E-17 1.8E-21 121.2 10.0 72 131-206 7-79 (99)
30 2x1f_A MRNA 3'-END-processing 99.7 5.7E-17 2E-21 120.7 10.1 78 132-214 2-80 (96)
31 2dgo_A Cytotoxic granule-assoc 99.7 5.6E-17 1.9E-21 124.3 10.3 75 131-209 14-89 (115)
32 1x5s_A Cold-inducible RNA-bind 99.7 4.1E-17 1.4E-21 122.4 9.3 77 132-212 12-89 (102)
33 2dgp_A Bruno-like 4, RNA bindi 99.7 3E-17 1E-21 124.0 8.6 68 131-202 12-80 (106)
34 2dgs_A DAZ-associated protein 99.7 9.6E-17 3.3E-21 120.0 11.2 70 131-205 9-79 (99)
35 1x4h_A RNA-binding protein 28; 99.7 7.1E-17 2.4E-21 122.6 10.5 73 130-206 13-92 (111)
36 2cph_A RNA binding motif prote 99.7 8.5E-17 2.9E-21 121.5 10.8 71 131-205 14-87 (107)
37 2cpf_A RNA binding motif prote 99.7 3.8E-17 1.3E-21 121.8 8.7 74 132-205 5-78 (98)
38 2div_A TRNA selenocysteine ass 99.7 3E-17 1E-21 122.5 8.2 72 131-206 8-81 (99)
39 2lxi_A RNA-binding protein 10; 99.7 8.1E-18 2.8E-22 125.5 5.0 69 132-204 1-72 (91)
40 3md1_A Nuclear and cytoplasmic 99.7 6.9E-17 2.4E-21 116.5 9.6 71 133-206 2-72 (83)
41 1wi8_A EIF-4B, eukaryotic tran 99.7 9E-17 3.1E-21 121.3 10.4 75 128-206 11-85 (104)
42 1x4d_A Matrin 3; structural ge 99.7 4.4E-17 1.5E-21 125.4 8.7 75 131-214 14-90 (102)
43 2cpi_A CCR4-NOT transcription 99.7 8E-17 2.7E-21 123.7 10.1 78 132-209 15-95 (111)
44 2lkz_A RNA-binding protein 5; 99.7 2.1E-17 7.3E-22 125.2 6.7 66 132-201 9-77 (95)
45 2dng_A Eukaryotic translation 99.7 9.3E-17 3.2E-21 121.0 10.1 75 127-206 10-84 (103)
46 3lqv_A PRE-mRNA branch site pr 99.7 8.8E-17 3E-21 123.2 9.9 76 128-209 4-79 (115)
47 2kxn_B Transformer-2 protein h 99.7 8.3E-17 2.8E-21 127.6 10.0 71 130-204 44-115 (129)
48 1wex_A Hypothetical protein (r 99.7 1.3E-16 4.4E-21 122.7 10.7 65 131-204 14-78 (104)
49 2cpe_A RNA-binding protein EWS 99.7 1E-16 3.4E-21 122.6 10.1 71 131-205 14-93 (113)
50 2fy1_A RNA-binding motif prote 99.7 8.3E-17 2.8E-21 125.0 9.8 75 130-208 5-79 (116)
51 1x4c_A Splicing factor, argini 99.7 1.8E-16 6E-21 121.0 11.4 64 131-204 14-77 (108)
52 3ns6_A Eukaryotic translation 99.7 1.5E-17 5E-22 125.8 5.2 77 132-212 6-89 (100)
53 2kt5_A RNA and export factor-b 99.7 4.8E-16 1.6E-20 121.0 13.8 79 130-212 33-111 (124)
54 1x5t_A Splicing factor 3B subu 99.7 5.9E-17 2E-21 120.1 8.2 71 132-206 5-77 (96)
55 1sjq_A Polypyrimidine tract-bi 99.7 4.7E-17 1.6E-21 126.3 7.8 65 131-204 15-81 (105)
56 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.5E-16 5.1E-21 125.1 10.8 71 131-205 62-133 (140)
57 1oo0_B CG8781-PA, drosophila Y 99.7 1.2E-16 3.9E-21 121.7 9.5 72 131-206 25-97 (110)
58 2cqd_A RNA-binding region cont 99.7 2.2E-16 7.7E-21 121.3 11.1 76 131-211 16-92 (116)
59 1x5o_A RNA binding motif, sing 99.7 4.1E-16 1.4E-20 119.3 12.5 70 131-204 24-93 (114)
60 4a8x_A RNA-binding protein wit 99.7 9.5E-17 3.3E-21 116.7 8.4 77 132-210 4-80 (88)
61 1p27_B RNA-binding protein 8A; 99.7 8.9E-17 3E-21 121.4 8.5 72 131-205 22-93 (106)
62 3s7r_A Heterogeneous nuclear r 99.7 1.1E-16 3.7E-21 116.8 8.6 69 131-203 10-78 (87)
63 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-16 5E-21 119.1 8.9 70 131-206 8-81 (96)
64 2err_A Ataxin-2-binding protei 99.7 1.6E-16 5.4E-21 121.8 9.1 72 131-207 28-99 (109)
65 2cpj_A Non-POU domain-containi 99.7 2.4E-16 8.1E-21 118.0 9.9 67 131-206 14-80 (99)
66 3ex7_B RNA-binding protein 8A; 99.7 1.5E-16 5.2E-21 123.8 9.1 77 131-211 21-98 (126)
67 2ytc_A PRE-mRNA-splicing facto 99.7 3.2E-16 1.1E-20 113.6 10.3 67 131-206 11-78 (85)
68 1why_A Hypothetical protein ri 99.7 4.1E-16 1.4E-20 116.3 11.1 65 131-204 16-80 (97)
69 2cqp_A RNA-binding protein 12; 99.7 9.2E-17 3.2E-21 119.6 7.5 75 132-209 15-89 (98)
70 2dhg_A TRNA selenocysteine ass 99.7 1.1E-16 3.7E-21 120.5 7.9 72 130-205 7-80 (104)
71 2dh8_A DAZ-associated protein 99.7 1.5E-16 5E-21 120.2 8.6 71 131-206 15-86 (105)
72 2krb_A Eukaryotic translation 99.7 5.4E-17 1.8E-21 117.5 5.9 69 132-205 1-75 (81)
73 3p5t_L Cleavage and polyadenyl 99.7 3.2E-17 1.1E-21 121.1 4.7 70 133-206 2-74 (90)
74 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.2E-16 7.7E-21 127.4 10.1 78 131-211 38-115 (156)
75 1wg5_A Heterogeneous nuclear r 99.7 2.8E-16 9.6E-21 119.3 9.9 70 131-205 14-84 (104)
76 2jrs_A RNA-binding protein 39; 99.7 1.4E-16 4.9E-21 122.2 8.3 73 131-206 25-97 (108)
77 2ad9_A Polypyrimidine tract-bi 99.7 2E-16 6.8E-21 125.2 9.0 61 131-200 30-90 (119)
78 2cpy_A RNA-binding protein 12; 99.7 2E-16 6.9E-21 122.0 8.9 77 131-212 14-91 (114)
79 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-16 4.6E-21 126.0 8.0 75 130-207 40-114 (139)
80 1s79_A Lupus LA protein; RRM, 99.7 1.4E-16 4.7E-21 122.0 7.7 69 132-205 11-79 (103)
81 2cq4_A RNA binding motif prote 99.7 3E-16 1E-20 120.3 9.4 70 131-205 24-94 (114)
82 2db1_A Heterogeneous nuclear r 99.7 2E-16 6.9E-21 123.1 8.3 71 130-205 15-88 (118)
83 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.3E-16 4.5E-21 120.2 6.9 78 129-210 16-93 (100)
84 2dgw_A Probable RNA-binding pr 99.7 4E-16 1.4E-20 114.9 9.4 70 131-206 9-78 (91)
85 2ek1_A RNA-binding protein 12; 99.7 8.4E-17 2.9E-21 119.0 5.6 71 132-205 15-85 (95)
86 3ucg_A Polyadenylate-binding p 99.7 3.4E-16 1.1E-20 114.2 8.5 70 132-206 6-76 (89)
87 1wez_A HnRNP H', FTP-3, hetero 99.7 2.3E-16 7.8E-21 120.2 7.8 67 132-204 15-81 (102)
88 2a3j_A U1 small nuclear ribonu 99.6 1.9E-16 6.4E-21 126.1 7.5 75 131-211 28-106 (127)
89 2dnl_A Cytoplasmic polyadenyla 99.6 3.2E-16 1.1E-20 120.8 8.6 72 132-204 8-82 (114)
90 2nlw_A Eukaryotic translation 99.6 1.2E-16 4.3E-21 121.4 6.1 70 131-205 14-89 (105)
91 1p1t_A Cleavage stimulation fa 99.6 6.2E-17 2.1E-21 121.6 4.4 72 131-205 7-78 (104)
92 2dgt_A RNA-binding protein 30; 99.6 6.6E-16 2.3E-20 114.1 9.7 65 131-206 9-73 (92)
93 2fc9_A NCL protein; structure 99.6 8.5E-16 2.9E-20 115.2 10.3 68 131-205 14-81 (101)
94 2dnq_A RNA-binding protein 4B; 99.6 6.8E-16 2.3E-20 113.6 9.2 65 131-206 7-71 (90)
95 3n9u_C Cleavage and polyadenyl 99.6 3.1E-16 1.1E-20 128.4 8.1 75 132-210 55-132 (156)
96 2f3j_A RNA and export factor b 99.6 1.3E-15 4.4E-20 127.0 11.7 80 129-212 85-164 (177)
97 2m2b_A RNA-binding protein 10; 99.6 2.1E-16 7.3E-21 124.6 6.6 77 131-212 22-105 (131)
98 2cqg_A TDP-43, TAR DNA-binding 99.6 6.9E-16 2.3E-20 116.1 9.0 68 131-203 14-81 (103)
99 1whx_A Hypothetical protein ri 99.6 3.6E-16 1.2E-20 120.5 7.6 72 132-212 10-81 (111)
100 4f02_A Polyadenylate-binding p 99.6 4.2E-16 1.4E-20 131.6 8.7 73 130-206 13-86 (213)
101 2la4_A Nuclear and cytoplasmic 99.6 7.8E-16 2.7E-20 115.4 9.1 67 131-206 26-92 (101)
102 1x4f_A Matrin 3; structural ge 99.6 9.5E-16 3.3E-20 120.1 9.9 75 131-214 24-100 (112)
103 1nu4_A U1A RNA binding domain; 99.6 3E-16 1E-20 116.4 6.6 69 131-205 7-79 (97)
104 2wbr_A GW182, gawky, LD47780P; 99.6 3.2E-16 1.1E-20 118.5 6.4 72 132-212 7-78 (89)
105 1wel_A RNA-binding protein 12; 99.6 3.1E-16 1.1E-20 122.4 6.5 78 128-210 21-99 (124)
106 2dnp_A RNA-binding protein 14; 99.6 8.9E-16 3E-20 113.0 8.6 65 131-206 8-72 (90)
107 1x4g_A Nucleolysin TIAR; struc 99.6 8E-16 2.7E-20 117.2 8.5 67 131-206 24-90 (109)
108 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.1E-16 7.1E-21 112.4 4.9 67 133-204 1-68 (77)
109 2kn4_A Immunoglobulin G-bindin 99.6 7.5E-16 2.6E-20 124.0 8.8 79 131-214 69-148 (158)
110 2dnn_A RNA-binding protein 12; 99.6 9.7E-16 3.3E-20 118.8 9.1 67 132-204 16-82 (109)
111 2e5j_A Methenyltetrahydrofolat 99.6 1.2E-15 4E-20 113.9 9.1 69 130-206 17-85 (97)
112 2rs2_A Musashi-1, RNA-binding 99.6 9.6E-16 3.3E-20 117.6 8.6 70 130-204 23-93 (109)
113 2lea_A Serine/arginine-rich sp 99.6 2.3E-16 7.9E-21 125.8 5.2 71 131-205 46-117 (135)
114 2fc8_A NCL protein; structure 99.6 1.8E-15 6.2E-20 113.4 9.8 70 130-206 13-83 (102)
115 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.3E-15 4.4E-20 124.5 9.5 77 131-211 71-148 (165)
116 2lmi_A GRSF-1, G-rich sequence 99.6 5.8E-16 2E-20 118.1 6.8 71 130-205 9-82 (107)
117 2mss_A Protein (musashi1); RNA 99.6 3.6E-16 1.2E-20 111.0 5.3 66 134-204 1-67 (75)
118 1fxl_A Paraneoplastic encephal 99.6 1.9E-15 6.6E-20 119.9 10.1 75 132-210 2-77 (167)
119 2jvr_A Nucleolar protein 3; RN 99.6 5.8E-16 2E-20 120.7 6.8 69 131-206 27-96 (111)
120 2dgu_A Heterogeneous nuclear r 99.6 1.7E-15 5.7E-20 114.3 8.9 63 132-205 11-73 (103)
121 3beg_B Splicing factor, argini 99.6 5.2E-16 1.8E-20 120.1 6.2 66 131-206 15-80 (115)
122 1x4b_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 117.3 8.1 70 131-205 26-96 (116)
123 2hgl_A HNRPF protein, heteroge 99.6 5.6E-16 1.9E-20 124.8 6.4 70 131-205 43-115 (136)
124 2jwn_A Embryonic polyadenylate 99.6 1E-15 3.6E-20 118.7 7.7 70 132-206 36-106 (124)
125 2cpd_A Apobec-1 stimulating pr 99.6 4.5E-15 1.5E-19 111.0 10.9 65 131-206 14-80 (99)
126 2hgn_A Heterogeneous nuclear r 99.6 3E-16 1E-20 126.9 4.6 69 131-205 45-113 (139)
127 2cq2_A Hypothetical protein LO 99.6 1.6E-15 5.5E-20 119.3 8.3 63 131-202 24-88 (114)
128 1b7f_A Protein (SXL-lethal pro 99.6 2.5E-15 8.5E-20 119.9 9.5 75 132-210 3-78 (168)
129 2ki2_A SS-DNA binding protein 99.6 2.1E-16 7.2E-21 115.9 2.9 75 133-211 2-76 (90)
130 2xnq_A Nuclear polyadenylated 99.6 4.1E-15 1.4E-19 111.8 10.1 66 130-206 20-86 (97)
131 2e5i_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 118.6 10.3 63 133-204 26-89 (124)
132 2dis_A Unnamed protein product 99.6 1.2E-15 4.1E-20 115.7 7.0 70 132-205 8-82 (109)
133 2jvo_A Nucleolar protein 3; nu 99.6 3.2E-15 1.1E-19 114.8 9.3 64 131-205 30-93 (108)
134 1wf1_A RNA-binding protein RAL 99.6 7.2E-15 2.5E-19 112.0 11.0 69 131-210 26-95 (110)
135 2kvi_A Nuclear polyadenylated 99.6 3.8E-15 1.3E-19 111.1 8.9 71 131-212 9-80 (96)
136 2xs2_A Deleted in azoospermia- 99.6 2.6E-16 9E-21 118.2 2.5 70 131-204 8-80 (102)
137 2hvz_A Splicing factor, argini 99.6 1.1E-15 3.7E-20 114.6 5.7 66 133-206 1-66 (101)
138 3md3_A Nuclear and cytoplasmic 99.6 2.8E-15 9.5E-20 118.9 8.4 75 133-211 1-75 (166)
139 3q2s_C Cleavage and polyadenyl 99.6 1E-15 3.4E-20 132.5 6.3 75 131-209 67-144 (229)
140 1fjc_A Nucleolin RBD2, protein 99.6 1.6E-15 5.5E-20 112.5 6.5 68 131-206 15-82 (96)
141 2hgm_A HNRPF protein, heteroge 99.6 2.8E-15 9.5E-20 119.5 8.2 68 131-204 41-110 (126)
142 2cqh_A IGF-II mRNA-binding pro 99.6 1.6E-15 5.6E-20 112.0 6.4 69 131-209 7-77 (93)
143 3nmr_A Cugbp ELAV-like family 99.6 2.7E-15 9.3E-20 120.2 8.2 79 131-213 94-174 (175)
144 1x5p_A Negative elongation fac 99.6 1.3E-14 4.6E-19 108.2 11.0 64 131-205 14-77 (97)
145 2e44_A Insulin-like growth fac 99.6 3.7E-15 1.3E-19 110.5 7.8 69 131-206 14-83 (96)
146 3md3_A Nuclear and cytoplasmic 99.6 1.1E-14 3.9E-19 115.3 11.0 72 131-206 86-158 (166)
147 3zzy_A Polypyrimidine tract-bi 99.6 8.2E-15 2.8E-19 117.7 10.0 64 133-204 29-93 (130)
148 2cpx_A Hypothetical protein FL 99.6 3.7E-15 1.3E-19 113.9 7.7 68 130-204 23-94 (115)
149 2i2y_A Fusion protein consists 99.6 4.7E-15 1.6E-19 118.9 8.4 66 131-204 72-137 (150)
150 2hzc_A Splicing factor U2AF 65 99.6 2.8E-15 9.7E-20 108.8 6.5 65 132-206 6-81 (87)
151 1sjr_A Polypyrimidine tract-bi 99.6 3.4E-15 1.2E-19 124.4 7.7 67 131-204 45-111 (164)
152 1fj7_A Nucleolin RBD1, protein 99.6 5E-16 1.7E-20 116.4 2.4 68 131-204 16-84 (101)
153 3egn_A RNA-binding protein 40; 99.6 4.5E-15 1.5E-19 118.1 8.0 74 130-209 43-124 (143)
154 1wg1_A KIAA1579 protein, homol 99.6 6.4E-15 2.2E-19 108.2 8.0 66 132-207 5-70 (88)
155 2g4b_A Splicing factor U2AF 65 99.6 7.5E-15 2.6E-19 117.8 9.0 113 73-210 55-169 (172)
156 2dha_A FLJ20171 protein; RRM d 99.6 6.1E-16 2.1E-20 122.6 2.6 69 131-204 22-94 (123)
157 1iqt_A AUF1, heterogeneous nuc 99.6 1E-15 3.5E-20 108.4 3.3 66 134-204 1-67 (75)
158 3d2w_A TAR DNA-binding protein 99.6 1.3E-14 4.4E-19 107.7 9.4 64 131-206 10-73 (89)
159 3nmr_A Cugbp ELAV-like family 99.6 9E-15 3.1E-19 117.1 8.7 72 132-204 3-74 (175)
160 1l3k_A Heterogeneous nuclear r 99.6 7E-15 2.4E-19 120.3 8.1 77 129-209 10-86 (196)
161 2lcw_A RNA-binding protein FUS 99.3 3.2E-16 1.1E-20 120.7 0.0 74 132-209 7-89 (116)
162 4f02_A Polyadenylate-binding p 99.5 7.6E-15 2.6E-19 123.9 8.0 72 132-208 103-174 (213)
163 3pgw_S U1-70K; protein-RNA com 99.5 1.4E-14 4.9E-19 136.4 10.6 77 131-211 101-178 (437)
164 3tyt_A Heterogeneous nuclear r 99.5 1.9E-14 6.5E-19 122.1 10.2 68 132-207 4-72 (205)
165 2qfj_A FBP-interacting repress 99.5 1.9E-14 6.4E-19 119.5 9.5 76 131-209 124-199 (216)
166 2cjk_A Nuclear polyadenylated 99.5 8.6E-15 2.9E-19 116.9 7.0 71 132-206 3-77 (167)
167 2e5g_A U6 snRNA-specific termi 99.5 3.5E-14 1.2E-18 105.3 9.6 67 132-207 8-74 (94)
168 1b7f_A Protein (SXL-lethal pro 99.5 4.7E-14 1.6E-18 112.4 10.2 69 132-204 89-158 (168)
169 2qfj_A FBP-interacting repress 99.5 2.6E-14 8.9E-19 118.6 9.0 71 132-206 28-99 (216)
170 1fxl_A Paraneoplastic encephal 99.5 2.5E-14 8.7E-19 113.4 8.5 71 132-206 88-159 (167)
171 2yh0_A Splicing factor U2AF 65 99.5 3E-14 1E-18 116.7 8.8 131 73-209 55-188 (198)
172 3tyt_A Heterogeneous nuclear r 99.5 1.4E-14 4.8E-19 123.0 6.2 69 131-204 122-192 (205)
173 2bz2_A Negative elongation fac 99.5 5.7E-14 1.9E-18 110.2 8.7 65 130-205 37-101 (121)
174 2adc_A Polypyrimidine tract-bi 99.5 3.3E-14 1.1E-18 121.2 7.7 68 131-206 33-101 (229)
175 3sde_A Paraspeckle component 1 99.5 6.3E-14 2.2E-18 121.8 9.3 85 131-225 21-105 (261)
176 3pgw_A U1-A; protein-RNA compl 99.5 1.7E-13 5.8E-18 119.1 11.0 76 131-212 8-87 (282)
177 1l3k_A Heterogeneous nuclear r 99.5 1.1E-13 3.6E-18 113.2 8.9 73 132-209 104-177 (196)
178 3pgw_A U1-A; protein-RNA compl 99.5 6.3E-13 2.1E-17 115.5 13.9 65 131-203 206-270 (282)
179 1wf0_A TDP-43, TAR DNA-binding 99.5 1.3E-13 4.4E-18 100.9 7.5 66 132-209 5-70 (88)
180 2cjk_A Nuclear polyadenylated 99.4 4.9E-14 1.7E-18 112.4 5.0 69 132-205 87-156 (167)
181 3u1l_A PRE-mRNA-splicing facto 99.4 8.4E-14 2.9E-18 122.2 7.0 63 131-202 133-204 (240)
182 2voo_A Lupus LA protein; RNA-b 99.4 2.1E-13 7.3E-18 114.9 8.8 68 132-204 109-176 (193)
183 2diu_A KIAA0430 protein; struc 99.4 2.5E-13 8.5E-18 103.9 7.7 77 132-222 8-90 (96)
184 1fje_B Nucleolin RBD12, protei 99.4 2.8E-13 9.5E-18 109.2 8.4 107 73-206 58-165 (175)
185 2j8a_A Histone-lysine N-methyl 99.4 1E-13 3.5E-18 111.9 5.4 74 133-210 3-91 (136)
186 2pe8_A Splicing factor 45; RRM 99.4 6.8E-13 2.3E-17 102.0 9.9 82 131-215 7-93 (105)
187 1qm9_A Polypyrimidine tract-bi 99.4 1.6E-13 5.5E-18 113.2 6.3 70 132-209 3-73 (198)
188 3tht_A Alkylated DNA repair pr 99.4 2.6E-13 8.9E-18 124.8 8.2 65 130-203 16-82 (345)
189 3smz_A Protein raver-1, ribonu 99.4 4.5E-13 1.6E-17 116.5 9.3 79 131-214 183-262 (284)
190 1qm9_A Polypyrimidine tract-bi 99.4 8E-13 2.7E-17 108.9 8.0 72 131-210 119-191 (198)
191 3sde_A Paraspeckle component 1 99.4 7.4E-13 2.5E-17 115.0 8.0 69 132-204 96-164 (261)
192 1fje_B Nucleolin RBD12, protei 99.4 1.1E-13 3.9E-18 111.5 2.6 76 129-209 10-85 (175)
193 2ghp_A U4/U6 snRNA-associated 99.4 6.6E-13 2.3E-17 115.9 7.5 73 131-206 209-282 (292)
194 2g4b_A Splicing factor U2AF 65 99.4 7.2E-13 2.5E-17 106.1 6.7 68 132-209 4-82 (172)
195 3v4m_A Splicing factor U2AF 65 99.4 1.8E-12 6E-17 99.5 8.5 82 132-215 5-96 (105)
196 2dit_A HIV TAT specific factor 99.4 3.3E-12 1.1E-16 98.0 9.9 76 131-214 14-100 (112)
197 3smz_A Protein raver-1, ribonu 99.4 1.8E-12 6.3E-17 112.6 9.6 70 132-205 95-165 (284)
198 2adc_A Polypyrimidine tract-bi 99.4 1.7E-12 5.9E-17 110.5 9.2 65 131-203 150-215 (229)
199 2ghp_A U4/U6 snRNA-associated 99.3 1.8E-12 6E-17 113.2 8.0 75 132-210 117-192 (292)
200 3ue2_A Poly(U)-binding-splicin 99.3 7.9E-12 2.7E-16 98.2 9.9 84 131-215 19-108 (118)
201 2yh0_A Splicing factor U2AF 65 99.3 2.3E-12 7.8E-17 105.4 6.4 68 132-209 4-82 (198)
202 1jmt_A Splicing factor U2AF 35 99.2 5.1E-12 1.7E-16 96.7 2.9 65 136-204 19-95 (104)
203 1owx_A Lupus LA protein, SS-B, 99.1 4.6E-10 1.6E-14 89.1 9.0 66 132-206 18-85 (121)
204 2d9o_A DNAJ (HSP40) homolog, s 99.1 4.8E-10 1.6E-14 85.6 8.4 61 132-200 10-77 (100)
205 3s6e_A RNA-binding protein 39; 99.0 1.2E-09 4E-14 85.3 10.3 78 129-214 4-91 (114)
206 2dnr_A Synaptojanin-1; RRM dom 98.8 9.1E-09 3.1E-13 77.8 6.3 69 133-213 8-84 (91)
207 3dxb_A Thioredoxin N-terminall 98.7 2.5E-08 8.6E-13 84.2 7.6 74 142-216 139-213 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.6 3.6E-08 1.2E-12 75.0 4.0 64 133-208 16-88 (95)
209 1whv_A Poly(A)-specific ribonu 98.0 4.4E-05 1.5E-09 58.3 9.2 56 131-198 15-70 (100)
210 2l9w_A U4/U6 snRNA-associated- 97.8 5.2E-05 1.8E-09 59.3 7.6 70 132-211 21-95 (117)
211 1uw4_A UPF3X; nonsense mediate 97.3 0.0014 4.8E-08 49.2 8.5 70 133-204 2-72 (91)
212 3ctr_A Poly(A)-specific ribonu 97.0 0.0009 3.1E-08 51.2 5.4 54 133-198 7-60 (101)
213 2dhx_A Poly (ADP-ribose) polym 96.9 0.0031 1.1E-07 48.5 7.5 62 132-204 8-78 (104)
214 1wey_A Calcipressin 1; structu 96.6 0.0025 8.4E-08 49.1 5.0 72 133-214 6-82 (104)
215 1wwh_A Nucleoporin 35, nucleop 96.6 0.0058 2E-07 48.0 7.0 71 132-213 24-94 (119)
216 2l08_A Regulator of nonsense t 96.2 0.011 3.7E-07 44.9 6.2 72 132-205 9-81 (97)
217 3pq1_A Poly(A) RNA polymerase; 95.2 0.0072 2.5E-07 57.4 2.2 55 132-195 53-107 (464)
218 2kn4_A Immunoglobulin G-bindin 94.9 0.014 4.8E-07 45.8 3.0 34 161-199 2-35 (158)
219 3d45_A Poly(A)-specific ribonu 94.0 0.16 5.4E-06 48.4 8.4 55 132-198 440-494 (507)
220 3p3d_A Nucleoporin 53; structu 92.6 0.097 3.3E-06 41.7 3.8 80 133-215 8-98 (132)
221 2i2y_A Fusion protein consists 86.4 0.26 8.9E-06 38.2 1.7 28 177-204 13-41 (150)
222 4f25_A Polyadenylate-binding p 71.5 0.82 2.8E-05 34.0 0.0 96 36-148 15-113 (115)
223 4e8u_A Putative uncharacterize 51.1 20 0.00068 29.5 4.8 49 134-188 14-73 (172)
224 3fry_A Probable copper-exporti 36.8 71 0.0024 20.6 5.2 61 133-204 7-67 (73)
225 3pgw_S U1-70K; protein-RNA com 30.4 6.9 0.00024 36.2 -1.3 15 149-163 9-23 (437)
226 2e7g_A Putative ribosome-bindi 28.5 1.1E+02 0.0037 23.3 5.6 56 156-218 43-110 (129)
227 1yg0_A COP associated protein; 26.0 1.1E+02 0.0038 18.2 6.4 57 134-200 4-63 (66)
228 1aw0_A Menkes copper-transport 25.4 1.2E+02 0.0041 18.5 4.7 60 133-202 5-68 (72)
229 2l3m_A Copper-ION-binding prot 25.0 1.2E+02 0.0042 18.5 6.6 60 133-202 7-70 (71)
230 3fut_A Dimethyladenosine trans 21.4 41 0.0014 28.9 2.0 33 133-166 111-143 (271)
231 1cpz_A Protein (COPZ); copper 20.8 1.5E+02 0.005 17.8 7.8 59 134-202 3-65 (68)
232 2lfv_A Protein DAMX; cell divi 26.3 21 0.00071 26.8 0.0 52 144-199 34-86 (106)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=131.84 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=64.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+++|||+|||.++|+++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++.|||..|....
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV---AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS---SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC---CCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 57999999999999999999999999999999999872 1455569999999999999999999999998643
No 2
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.6e-18 Score=123.92 Aligned_cols=73 Identities=19% Similarity=0.363 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.++ ++...| ||||+|.+.++|++|++.|||..+.....
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g----~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKG----VAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTT----CEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCccc----EEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 36899999999999999999999999999999999987 333334 99999999999999999999998885433
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=130.27 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=66.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
.++|||+|||+++++++|+++|++||.|++|+|+.++. .|+++|||||+|++.++|++|++.|||+.|......+.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~---tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR---TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC---CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 57999999999999999999999999999999999972 14455699999999999999999999999986444433
No 4
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=5.4e-18 Score=131.22 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=63.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+++|||+|||+++|+++|+++|++||.|++|+|+.++++ ++|||||+|.+.++|++||+.|+|+.|....
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~-----~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-----SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-----EEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC-----CCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 578999999999999999999999999999999998743 3449999999999999999999999987643
No 5
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=4.8e-17 Score=125.27 Aligned_cols=72 Identities=22% Similarity=0.348 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.++ ++. ++|||||+|.+.++|++|++.|||..|....
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSL----SKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSC----CCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC----cCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 46899999999999999999999999999999999886 333 3349999999999999999999999987543
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=121.81 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++++|||+|||.++|+++|+++|++||.|++|+|+.++ ++. ++|||||+|.+.++|++|++.|||+.+....
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR----SKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCC----CCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCc----eeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 46899999999999999999999999999999999987 333 3449999999999999999999999887533
No 7
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.5e-17 Score=122.11 Aligned_cols=72 Identities=22% Similarity=0.305 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
..++|||+|||.++|+++|+++|++||.|++|+|+.++.+.+ | ||||+|.+.++|++|++.|||..|.....
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-g----~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK-G----FGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTC-C----EEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-E----EEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 468999999999999999999999999999999999874433 3 99999999999999999999999876443
No 8
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=121.41 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++++|||+|||.++++++|+++|++||.|.+|+|+.++ ++ .++|||||+|.+.++|++|++.|||..+..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN----KCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSC----SCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC----CcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 46899999999999999999999999999999999986 33 334499999999999999999999998875
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=121.00 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
+.++|||+|||.++++++|+++|++||.|.+|+++.++ + |.++|||||+|.+.++|++|++.|||..+.....
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMAT----GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC----CccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 36899999999999999999999999999999999986 3 3455699999999999999999999998876433
No 10
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=124.17 Aligned_cols=70 Identities=19% Similarity=0.377 Sum_probs=61.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++. .+| ||||+|.+.++|++|++.|||..|....
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~--~~g----~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG--GPP----FAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS--SSC----CEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCc----EEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 468999999999999999999999999999999976541 223 9999999999999999999999887543
No 11
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=2.9e-17 Score=123.82 Aligned_cols=80 Identities=29% Similarity=0.381 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee--eec
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC--LSN 208 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~--r~~ 208 (235)
++++|||+|||.++++++|+++|++||.|++|+|+.+++ |.++|||||+|.+.++|++|++.|||..+... +.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD----GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS----SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 368999999999999999999999999999999999874 34556999999999999999999999988763 444
Q ss_pred eEEEEe
Q 026648 209 LVVFYQ 214 (235)
Q Consensus 209 ~~~~~~ 214 (235)
.+-+++
T Consensus 90 ~V~~a~ 95 (105)
T 2dnh_A 90 VVKFAD 95 (105)
T ss_dssp EEEESC
T ss_pred EEEECc
Confidence 444444
No 12
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=122.56 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+++++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++.|||..+...
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---SRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS---SSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3468999999999999999999999999999999999872 134556999999999999999999999988753
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=123.64 Aligned_cols=72 Identities=22% Similarity=0.392 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++ + |.++|||||+|.+.++|++|++.|||..|....
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT----GQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSS----CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCC----CceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 46899999999999999999999999999999999986 3 345569999999999999999999999988543
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=122.37 Aligned_cols=72 Identities=26% Similarity=0.530 Sum_probs=64.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.+++ |.++|||||+|.+.++|++|++.|||..+....
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 368999999999999999999999999999999999873 345559999999999999999999998887533
No 15
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=124.03 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.++. |.+++||||+|.+.++|++|++.|||..+...
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 468999999999999999999999999999999999874 34556999999999999999999999998753
No 16
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=3e-17 Score=120.81 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.+. |.+++||||+|.+.++|++|++.|||..+......
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-----GKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS-----SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC-----CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 46899999999999999999999999999999999853 34455999999999999999999999998764333
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=123.56 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
++.++|||+|||.++|+++|+++|++||.|++|+|+.++ ++ .++|||||+|.+.++|++|++.|||..|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTG----QHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC----SBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC----cCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 346899999999999999999999999999999999987 43 3344999999999999999999999988753
No 18
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=124.35 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++ ++. ++|||||+|.+.++|++|++.|||..|....
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKA----PRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCS----BCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC----CCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 46899999999999999999999999999999999887 333 3449999999999999999999999987543
No 19
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=2.5e-17 Score=119.34 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=63.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++++++|+++|++||.|.+|+++.++ ++ .++|||||+|.+.++|++|++.|||..+....
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCC----ccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 36899999999999999999999999999999999885 43 33349999999999999999999999987543
No 20
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-17 Score=122.44 Aligned_cols=71 Identities=23% Similarity=0.413 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..++|||+|||.++++++|+++|++||.|++|+|+.++...+ | ||||+|.+.++|++|++.|||..|....
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-g----~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSND-P----YCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSC-C----EEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCC-C----EEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 468999999999999999999999999999999999874433 3 9999999999999999999999988533
No 21
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=123.22 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=66.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 026648 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 127 ~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~--------vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln 198 (235)
.++.+.++|||+|||.++|+++|+++|++||.|.+ |+|+.++. .|+++|||||+|.+.++|++|++.||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE---TGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT---TCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC---CCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34455799999999999999999999999999999 99999862 13455699999999999999999999
Q ss_pred CceEeee
Q 026648 199 GQSNIIC 205 (235)
Q Consensus 199 G~~i~~~ 205 (235)
|..+...
T Consensus 85 g~~~~g~ 91 (99)
T 2la6_A 85 GKEFSGN 91 (99)
T ss_dssp TCBSSSS
T ss_pred CCEeCCc
Confidence 9988753
No 22
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.8e-17 Score=123.87 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=64.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
++++|||+|||.++++++|+++|++||.|++|+|+.+++ |.+++||||+|.+.++|++|++.|||+.|...
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 368999999999999999999999999999999999874 34556999999999999999999999998753
No 23
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=3.3e-17 Score=125.86 Aligned_cols=72 Identities=18% Similarity=0.360 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.++ + |.++|||||+|.+.++|++|++.|||+.|....
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQT----NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSS----CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC----CCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 46899999999999999999999999999999999987 3 445569999999999999999999999988543
No 24
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=122.70 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.+ + |.+++||||+|.+.++|++|++.|||..+...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-G----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S----SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-C----CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 34689999999999999999999999999999999988 3 34555999999999999999999999988653
No 25
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.5e-17 Score=123.86 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=57.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC--ceEe
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG--QSNI 203 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG--~~i~ 203 (235)
++++|||+|||+++|+++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++ ..+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK-----N----QAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceEC
Confidence 46899999999999999999999999999999998764 5 999999999999999998864 4454
No 26
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=3.7e-17 Score=123.65 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+++++|||+|||.++|+++|+++|++||.|++|+|+.+++ |+++|||||+|.+.++|++|++.|||..|......+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3468999999999999999999999999999999999874 344559999999999999999999999987644333
No 27
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=125.92 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
++++|||+|||+++|+++|+++|++||.|++|+|++.| | ||||+|++.++|++|++.|+|..+......+.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK-----R----QALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 47899999999999999999999999999999998654 5 99999999999999999999987654444443
Q ss_pred E
Q 026648 211 V 211 (235)
Q Consensus 211 ~ 211 (235)
+
T Consensus 91 V 91 (100)
T 3r27_A 91 V 91 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 28
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=122.87 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++ ++. ++|||||+|.+.++|++|++.|||..|......+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK----HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCC----CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCC----cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 36899999999999999999999999999999999886 333 3349999999999999999999999988544333
Q ss_pred E
Q 026648 210 V 210 (235)
Q Consensus 210 ~ 210 (235)
.
T Consensus 87 ~ 87 (102)
T 2cqb_A 87 N 87 (102)
T ss_dssp E
T ss_pred E
Confidence 3
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=121.23 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++++|||+|||.++|+++|+++|++||.|++|+|+.++ ++..+| ||||+|.+.++|++|++.|||..+....
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g----~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKG----FAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCS----EEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCe----EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 36899999999999999999999999999999999987 443334 9999999999999999999999887533
No 30
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=5.7e-17 Score=120.74 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
+++|||+|||.++++++|+++|++||.|.+|+|+.++ ++ .++|||||+|.+.++|++|++.|||..+.. +.+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTG----RSKGYAFIEFRDLESSASAVRNLNGYQLGS-RFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTC----CBCSEEEEEESSHHHHHHHHHHHTTCEETT-EECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC----ccceEEEEEECCHHHHHHHHHHhCCCeECC-eEEEE
Confidence 5899999999999999999999999999999999886 33 334499999999999999999999999886 33334
Q ss_pred EEEe
Q 026648 211 VFYQ 214 (235)
Q Consensus 211 ~~~~ 214 (235)
.++.
T Consensus 77 ~~a~ 80 (96)
T 2x1f_A 77 GYSS 80 (96)
T ss_dssp EECS
T ss_pred EEcC
Confidence 4443
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.70 E-value=5.6e-17 Score=124.34 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.++ + |.++|||||+|.+.++|++|++.|||..|......+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT----GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 46899999999999999999999999999999999986 3 345569999999999999999999999988644333
No 32
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=122.39 Aligned_cols=77 Identities=25% Similarity=0.283 Sum_probs=66.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
.++|||+|||.++|+++|+++|++||.|++|+|+.++ ++ .++|||||+|.+.++|++|++.|||..|......+.
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ----RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSC----SCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC----CcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 6899999999999999999999999999999999987 33 334499999999999999999999999876444444
Q ss_pred EE
Q 026648 211 VF 212 (235)
Q Consensus 211 ~~ 212 (235)
+.
T Consensus 88 ~a 89 (102)
T 1x5s_A 88 QA 89 (102)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 33
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=3e-17 Score=123.99 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceE
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSN 202 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i 202 (235)
..++|||+|||.++|+++|+++|++||.|++|+|+.++ ++. ++|||||+|.+.++|++|++.|||..+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGM----HKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCS----CCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC----cceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 46899999999999999999999999999999999987 333 334999999999999999999999986
No 34
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=119.95 Aligned_cols=70 Identities=21% Similarity=0.409 Sum_probs=62.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.++ ++. ++|||||+|.+.++|++|++ |+|..|...
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR----PRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCS----CCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC----CCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 36899999999999999999999999999999999987 333 33499999999999999999 999988753
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.1e-17 Score=122.65 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhc------CceE
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQ------GQSN 202 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln------G~~i 202 (235)
.+.++|||+|||+++|+++|+++|++||.|++|+|+.++ ++. ++|||||+|.+.++|++|++.|| |..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH----SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCC----BCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC----CccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 346899999999999999999999999999999999987 333 33499999999999999999999 8888
Q ss_pred eeee
Q 026648 203 IICL 206 (235)
Q Consensus 203 ~~~r 206 (235)
....
T Consensus 89 ~g~~ 92 (111)
T 1x4h_A 89 DGRQ 92 (111)
T ss_dssp SSCE
T ss_pred cCEE
Confidence 7533
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.5e-17 Score=121.46 Aligned_cols=71 Identities=28% Similarity=0.422 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeC-C-CCCCCCCCceEEEEEecCHHHHHHHHHHh-cCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK-E-SRHPGGDPLILCFVDFVSPAHAATAMDAL-QGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~d-k-~~~~gG~~~~faFVeF~s~~~A~~Ai~~L-nG~~i~~~ 205 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.+ + ++ .++|||||+|.+.++|++|++.| ||..|...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTG----AHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSC----SSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCC----CcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 4689999999999999999999999999999999988 4 33 33349999999999999999999 89988853
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=121.78 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=64.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+++|||+|||.++|+++|+++|++||.|++|+|+.++.....|.+++||||+|.+.++|++|++.|||..|...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 58999999999999999999999999999999998863110125566999999999999999999999998853
No 38
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=122.53 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeE-EEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~-~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++++|||+|||.++++++|+++|++||.|. +|+|+.++ + |.++|||||+|.+.++|++|++.|||..+....
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT----GIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSS----CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCC----CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 468999999999999999999999999999 99999987 3 345559999999999999999999999998755
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=8.1e-18 Score=125.47 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=59.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCc-eEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQ-SNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG-~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~-~i~~ 204 (235)
+++|||+|||+++||++|+++|++|| .|++|+|+.++ ++.. +|||||+|.+.++|++|++.|++. .+..
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~----rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQS----RGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCC----SSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCc----CceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 47999999999999999999999999 89999999987 4333 349999999999999999988654 4543
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=6.9e-17 Score=116.47 Aligned_cols=71 Identities=27% Similarity=0.320 Sum_probs=63.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.+|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++.|||..+....
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ---TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT---TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---CCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 6899999999999999999999999999999998861 1345569999999999999999999999987543
No 41
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9e-17 Score=121.31 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=63.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 128 ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+..+.++|||+|||.++|+++|+++|++|| |++|+|+.++.. .|.++|||||+|.+.++|++|+ .|||..|....
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC--TTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC--CCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 344568999999999999999999999999 999999988721 0233449999999999999999 99999987543
No 42
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=125.42 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee-eeec
Q 026648 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII-CLSN 208 (235)
Q Consensus 131 ~~~tLfVgNLP~-~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~-~r~~ 208 (235)
++++|||+|||+ ++|++||+++|++||.|++|+|+.++ | ||||+|++.++|++|++.||+..+.. .+.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-----N----EAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-----S----CEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 478999999999 99999999999999999999999775 4 99999999999999999999865332 2333
Q ss_pred eEEEEe
Q 026648 209 LVVFYQ 214 (235)
Q Consensus 209 ~~~~~~ 214 (235)
.+-++.
T Consensus 85 ~V~~a~ 90 (102)
T 1x4d_A 85 RVHLSQ 90 (102)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 344444
No 43
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8e-17 Score=123.69 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCCCHHHHH---HhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 132 SSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~---~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
.++|||+|||+++++++|+ ++|++||.|++|+|+.++.....+.++|||||+|.+.++|++|++.|||+.|......
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 5799999999999999999 9999999999999998873111124556999999999999999999999998754333
Q ss_pred e
Q 026648 209 L 209 (235)
Q Consensus 209 ~ 209 (235)
+
T Consensus 95 V 95 (111)
T 2cpi_A 95 A 95 (111)
T ss_dssp E
T ss_pred E
Confidence 3
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=125.16 Aligned_cols=66 Identities=15% Similarity=0.333 Sum_probs=58.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCC--eEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVG--YKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQS 201 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~--I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~ 201 (235)
-+||||+|||+++|+++|+++|++||. +.+|+|++++ ++ +++|||||+|.+.++|++|++.|||..
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg----~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQ----QNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSS----SCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCC----CCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 479999999999999999999999995 6789999987 43 344499999999999999999999974
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=9.3e-17 Score=121.05 Aligned_cols=75 Identities=23% Similarity=0.359 Sum_probs=64.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 127 ~ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.++.+.++|||+|||.++++++|+++|++|| |++|+|+.++. .|+++|||||+|.+.++|++|+ .|||..|....
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD---TDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS---SCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC---CCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3444578999999999999999999999996 99999999872 1345569999999999999999 89999988543
No 46
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=8.8e-17 Score=123.24 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=65.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 128 ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
|++++++|||+|||.++|+++|+++|++||.|.+|+|+.+.. ..| ||||+|.+.++|++|++.|||..+.....
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~~g----~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE--TRG----TAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT--TTT----CEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC--CCc----EEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 455678999999999999999999999999999999997642 124 99999999999999999999999875433
Q ss_pred ce
Q 026648 208 NL 209 (235)
Q Consensus 208 ~~ 209 (235)
.+
T Consensus 78 ~v 79 (115)
T 3lqv_A 78 VV 79 (115)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 47
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=8.3e-17 Score=127.61 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+++++|||+|||.++|+++|+++|++||.|++|+|+.++ ++.. +|||||+|.+.++|++|++.|||..|..
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~----~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS----RGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCC----CCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcc----ceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 446899999999999999999999999999999999987 3333 3499999999999999999999998875
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=122.74 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=58.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++++|||+|||+++++++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++..+.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-----R----QALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceE
Confidence 36899999999999999999999999999999998764 5 99999999999999999998765433
No 49
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=122.59 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeE--------EEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--------EVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQS 201 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~--------~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~ 201 (235)
..++|||+|||.++|+++|+++|++||.|+ .|+|+.++ ++. ++|||||+|.+.++|++|++.|||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~----~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGK----PKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCS----BCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCC----eeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 468999999999999999999999999999 69999986 433 34499999999999999999999999
Q ss_pred Eeee
Q 026648 202 NIIC 205 (235)
Q Consensus 202 i~~~ 205 (235)
|...
T Consensus 90 ~~g~ 93 (113)
T 2cpe_A 90 FQGS 93 (113)
T ss_dssp ETTE
T ss_pred cCCC
Confidence 8753
No 50
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=124.98 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
+..++|||+|||.++|+++|+++|++||.|++|+|+.++++. ++|||||+|.+.++|++|++.|||..|......
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~----~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK----SRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTT----CCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCC----cccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 346899999999999999999999999999999999987433 334999999999999999999999998764333
No 51
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=121.02 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..++|||+|||+++|+++|+++|++||.|++|+|+.+ | ||||+|.+.++|++||+.|||+.|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------T----EEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------C----EEEEEECCHHHHHHHHHHHCcCCccC
Confidence 4689999999999999999999999999999999987 4 99999999999999999999999885
No 52
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=1.5e-17 Score=125.76 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCeEEEcCCCC------CCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPS------DCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~------~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+++|||+|||. ++++++|+++|++||.|.+|+|+.++ ++. ++|||||+|.+.++|++|++.|||+.+..
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~----~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGK----TKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTE----ECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCc----cceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 57999999999 99999999999999999999999998 333 34499999999999999999999999986
Q ss_pred eeeceEEE
Q 026648 205 CLSNLVVF 212 (235)
Q Consensus 205 ~r~~~~~~ 212 (235)
.+...+..
T Consensus 82 ~r~l~V~~ 89 (100)
T 3ns6_A 82 KHRLFLYT 89 (100)
T ss_dssp SCBCEEEE
T ss_pred CeEEEEEE
Confidence 34433333
No 53
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=4.8e-16 Score=120.98 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+++++|||+|||.++++++|+++|++||.|++|+|+.++++.. +|||||+|.+.++|++|++.|||..+......+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRS----LGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSC----CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCE----eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4578999999999999999999999999999999999874333 349999999999999999999999887644444
Q ss_pred EEE
Q 026648 210 VVF 212 (235)
Q Consensus 210 ~~~ 212 (235)
.++
T Consensus 109 ~~a 111 (124)
T 2kt5_A 109 QLV 111 (124)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 54
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.9e-17 Score=120.07 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=63.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~v-rl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+++|||+|||.++|+++|+++|++||.|.+| +|+.++ ++. ++|||||+|.+.++|++|++.|||..+....
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN----SKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCS----CCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCC----cCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 6899999999999999999999999999999 999985 433 3349999999999999999999999987533
No 55
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=126.30 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=58.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC--ceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG--QSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG--~~i~~ 204 (235)
++++|||+|||+++||++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++ ..|..
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----faFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhccCCceECC
Confidence 36899999999999999999999999999999999874 5 999999999999999999875 45554
No 56
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=125.08 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=63.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++ ++.. +|||||+|.+.++|++|++.|||..|...
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKH----RGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCC----CSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCc----CcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 36899999999999999999999999999999999986 4333 34999999999999999999999988753
No 57
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.2e-16 Score=121.68 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++++|||+|||.++|+++|+++|++||.|++|+|+.++ ++ .++|||||+|.+.++|++|++.|||..|....
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG----FSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTS----SBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 46899999999999999999999999999999999886 43 33449999999999999999999999987543
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=121.34 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
..++|||+|||.++|+++|+++|++||.|++|+|+.++ ++..+ |||||+|.+.++|++|++.|++ .|......+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~----g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSR----GYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCC----SEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccc----eEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 36899999999999999999999999999999999987 33333 4999999999999999999998 666533333
Q ss_pred EE
Q 026648 210 VV 211 (235)
Q Consensus 210 ~~ 211 (235)
.+
T Consensus 91 ~~ 92 (116)
T 2cqd_A 91 NL 92 (116)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 59
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.1e-16 Score=119.34 Aligned_cols=70 Identities=17% Similarity=0.356 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..++|||+|||.++|+++|+++|++||.|.+|+|+.+++ |.++|||||+|.+.++|++|++.|||..|..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSS----GTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSS----SCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 358999999999999999999999999999999999873 3455599999999999999999999999864
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=9.5e-17 Score=116.74 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
.++|||+|||.++|+++|+++|++||.|.+|+|+.++... +.++|||||+|.+.++|++|++.|||..+......+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHP--HLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEE--EEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCC--CCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 4799999999999999999999999999999999887210 1133399999999999999999999999886444433
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.9e-17 Score=121.36 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
++++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++.|||..+...
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR---TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---CCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 368999999999999999999999999999999999872 134556999999999999999999999988753
No 62
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.1e-16 Score=116.82 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++. ++..+.
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~ 78 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN---TGRSRGFGFILFKDAASVEKVLDQ-KEHRLD 78 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---TCCEEEEEEEEESSTHHHHHHHHS-SCEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---CCccccEEEEEECCHHHHHHHHHh-CCCEEC
Confidence 468999999999999999999999999999999999872 134556999999999999999976 555544
No 63
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=119.06 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~----~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..++|||+|||+++++++|+ ++|++||.|++|+|+.++.. + | ||||+|.+.++|++|++.|||+.+....
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-r-g----~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-Q-L----KAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-T-C----CEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-C-e----EEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 35799999999999999999 99999999999999998743 3 4 9999999999999999999999988533
No 64
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=121.82 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
..++|||+|||.++|+++|+++|++||.|++|+|+.++++.+ | ||||+|.+.++|++|++.|||..+.....
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~k-g----~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK-G----FGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCT-T----EEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCc-e----EEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 468999999999999999999999999999999999874432 3 99999999999999999999999876433
No 65
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=118.00 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|++|+++.++ | ||||+|.+.++|++|++.|||..+....
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-----g----~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-----G----FGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-----T----EEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 36899999999999999999999999999999998664 5 9999999999999999999999987633
No 66
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.5e-16 Score=123.79 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
++++|||+|||.++|+++|+++|++||.|++|+|+.++ ++. ++|||||+|.+.++|++|++.|||..|......+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY----LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSS----BCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc----cceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 36899999999999999999999999999999999887 433 3449999999999999999999999987644444
Q ss_pred EE
Q 026648 210 VV 211 (235)
Q Consensus 210 ~~ 211 (235)
.+
T Consensus 97 ~~ 98 (126)
T 3ex7_B 97 DW 98 (126)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 67
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=113.62 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=61.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHh-cCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-QGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~L-nG~~i~~~r 206 (235)
..++|||+|||.++++++|+++|++||.|.+|+++.++ | ||||+|.+.++|++|++.| +|..+....
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-----g----~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-----Q----CAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-----C----EEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 46899999999999999999999999999999999864 5 9999999999999999999 998887643
No 68
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.1e-16 Score=116.30 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++++|||+|||.++|+++|+++|++||.|++|+++.++ | ||||+|.+.++|++|++.|||..+..
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~-----g----~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-----S----FAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSS-----C----CEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCC-----C----EEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 35899999999999999999999999999999998763 4 99999999999999999999999884
No 69
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9.2e-17 Score=119.65 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=64.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
.++|||+|||.++++++|+++|++||.|++++++.++. .|+++|||||+|.+.++|++|++.|||..|......+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS---SSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC---CCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 57999999999999999999999999999888887761 1445569999999999999999999999888644333
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=120.50 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcC-CCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce-Eeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRP-FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQS-NIIC 205 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~-fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~-i~~~ 205 (235)
.++++|||+|||.++|+++|+++|++ ||.|++|+|+.+++ |.++|||||+|.+.++|++|++.|+|.. +...
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT----GVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTT----CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 34689999999999999999999999 99999999999873 3455599999999999999999999998 7653
No 71
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=120.18 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.++ + |.++|||||+|.+.++|++|++. +|..|....
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~----g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT----NQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS----CCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC----CCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 46899999999999999999999999999999999986 3 34555999999999999999999 998887543
No 72
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-17 Score=117.52 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=60.3
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 132 SSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 132 ~~tLfVgNLP~~v------teedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+++|||+|||.++ |+++|+++|++||.|++|+|+.. + |.++|||||+|.+.++|++|++.|||+.+...
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-D----GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB-T----TBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC-C----CcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3699999999999 78999999999999999998843 3 23344999999999999999999999988754
No 73
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=3.2e-17 Score=121.13 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=61.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG--~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++ + |+++|||||+|.+.++|++|++.|||+.+....
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~----g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN----GQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTT----CCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCC----CccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 4799999999999999999999999 99999999987 3 455569999999999999999999999887643
No 74
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2.2e-16 Score=127.43 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++. .|.+++||||+|.+.++|++||+.|||..|......|.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM---KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 468999999999999999999999999999999999872 13445599999999999999999999999976443333
Q ss_pred E
Q 026648 211 V 211 (235)
Q Consensus 211 ~ 211 (235)
+
T Consensus 115 ~ 115 (156)
T 1h2v_Z 115 W 115 (156)
T ss_dssp E
T ss_pred E
Confidence 3
No 75
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=119.28 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=61.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~-vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.++++..+| ||||+|.++++|++||+. +|..|...
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G----~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTG----EAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCS----EEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcce----EEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 4689999999999999999999999999998 8888886443334 999999999999999998 88877653
No 76
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=122.19 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++.|||..+....
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE---TGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT---TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 468999999999999999999999999999999999862 1445569999999999999999999999887533
No 77
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=125.19 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=56.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
++++|||+|||+++||++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-----T----EEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhccC
Confidence 46899999999999999999999999999999999874 5 9999999999999999999854
No 78
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=121.97 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=65.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCe-EEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I-~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+.++|||+|||+++|+++|+++|++||.| .+|+|+.++++..+| ||||+|.+.++|++||+. ||..|......+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G----~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLG----QALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSS----CEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcce----EEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 46899999999999999999999999999 889999988443334 999999999999999988 998887644444
Q ss_pred EEE
Q 026648 210 VVF 212 (235)
Q Consensus 210 ~~~ 212 (235)
.++
T Consensus 89 ~~a 91 (114)
T 2cpy_A 89 HVV 91 (114)
T ss_dssp EEE
T ss_pred EEC
Confidence 443
No 79
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=126.03 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
+..++|||+|||.++|+++|+++|++||.|++|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.....
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE---TRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT---TTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4568999999999999999999999999999999999872 13455699999999999999999999998885433
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=122.00 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=61.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ .++|||||+|.+.++|++|++ ++|..+...
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g----~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr 79 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHK----AFKGSIFVVFDSIESAKKFVE-TPGQKYKET 79 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTT----SCCCEEEEEESSHHHHHHHHT-SSCCCCTTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCC----CCccEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence 479999999999999999999999999999999998743 334499999999999999999 899888753
No 81
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=120.25 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
..++|||+|||.++++++|+++|++||.|++|+|+.++ ++.. +|||||+|.+.++|++|+ .|||+.|...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRS----KGIAYVEFCEIQSVPLAI-GLTGQRLLGV 94 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSC----CCCEEEEESCGGGHHHHH-HHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCcc----CcEEEEEeCcHHHHHHHH-HcCCCEeCCe
Confidence 35799999999999999999999999999999999987 3333 349999999999999999 9999988753
No 82
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=2e-16 Score=123.13 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~---I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
...++|||+|||+++|+++|+++|++||. |++|+|+.++. |+++|||||+|.+.++|++||+ |||..|...
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 34689999999999999999999999999 89999999874 3455699999999999999999 999888753
No 83
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=120.15 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=62.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 129 pd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
+...++|||+|||.++++++|+++|++|| |++|+|+.++.. .|+++|||||+|.+.++|++|+ .|+|..+......
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTT--TCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCc--CCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 34578999999999999999999999999 999999988610 1334449999999999999999 9999988764433
Q ss_pred eE
Q 026648 209 LV 210 (235)
Q Consensus 209 ~~ 210 (235)
+.
T Consensus 92 V~ 93 (100)
T 2j76_E 92 VD 93 (100)
T ss_dssp CE
T ss_pred EE
Confidence 33
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=114.85 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..++|||+|||+++|+++|+++|++| .|.+|+|+.+.+ |+++|||||+|.+.++|++|++ |||..|....
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~ 78 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH----GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRY 78 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT----SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC----CCCceEEEEEECCHHHHHHHHH-hCCceeCCcE
Confidence 46899999999999999999999999 999999999854 3455599999999999999999 9999987643
No 85
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=8.4e-17 Score=119.04 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=63.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
.++|||+|||.++|+++|+++|++||.|++++++.++. .|+++|||||+|.++++|++|++.|||..|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 85 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT---TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC---CCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 47999999999999999999999999999999888761 144556999999999999999999999998753
No 86
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=3.4e-16 Score=114.25 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.++|||+|||.++|+++|+++|++||.|.+|+++.++ ++ .++|||||+|.+.++|++|+ .|||..+....
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSG----HPKGFAYIEFSDKESVRTSL-ALDESLFRGRQ 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSS----SCCEEEEEEESSTHHHHHHG-GGTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHH-hcCCCEECCcE
Confidence 4799999999999999999999999999999999986 43 34459999999999999999 99999987533
No 87
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=120.18 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=59.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.++|||+|||+++|++||+++|++|| +++|+|+.+++ |+++|||||+|.++++|++||+ +|+..|..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPD----GRVTGEADVEFATHEDAVAAMA-KDKANMQH 81 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSS----SCEEEEEEEECSSSHHHHHHHT-TSSCCSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 57999999999999999999999999 55999999874 4555699999999999999995 79887765
No 88
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=126.10 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~----~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++++|||+|||+++++++|+ ++|++||.|++|.+..+ |+++|||||+|.+.++|++|++.|||+.|....
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~------~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS------DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC------CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC------CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 36899999999999999876 69999999999988643 223349999999999999999999999988643
Q ss_pred eceEE
Q 026648 207 SNLVV 211 (235)
Q Consensus 207 ~~~~~ 211 (235)
..+.+
T Consensus 102 l~V~~ 106 (127)
T 2a3j_A 102 LVITF 106 (127)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 33333
No 89
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=120.84 Aligned_cols=72 Identities=26% Similarity=0.343 Sum_probs=61.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHh---cCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL---QGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~L---nG~~i~~ 204 (235)
+++|||+|||+++|+++|+++|++||.|. ++++.++.....|+++|||||+|.+.++|++||++| +|..+.+
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~ 82 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLC 82 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEe
Confidence 57999999999999999999999999999 888877622111345559999999999999999999 7877655
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=121.44 Aligned_cols=70 Identities=23% Similarity=0.296 Sum_probs=61.5
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~v------teedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.+++|||+|||..+ |+++|+++|++||.|++|+|+. .+ |.++|||||+|.+.++|++|++.|||+.+..
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~----g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-ED----GKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-BT----TBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-CC----CCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 46899999999999 7899999999999999999983 33 3344499999999999999999999999886
Q ss_pred e
Q 026648 205 C 205 (235)
Q Consensus 205 ~ 205 (235)
.
T Consensus 89 ~ 89 (105)
T 2nlw_A 89 Q 89 (105)
T ss_dssp T
T ss_pred C
Confidence 4
No 91
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.2e-17 Score=121.64 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
..++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.|||..+...
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE---TGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT---TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC---CCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 358999999999999999999999999999999998861 134556999999999999999999999988753
No 92
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.6e-16 Score=114.08 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=59.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|++|+++. + ||||+|.+.++|++|++.|||..+....
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~----~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------D----YAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------S----EEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------C----EEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 468999999999999999999999999999999983 3 9999999999999999999999987533
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.5e-16 Score=115.16 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=58.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+.++|||+|||.++|+++|+++|++||.| +++.+.++ +++|||||+|.+.++|++|++.|||..|...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNG----KSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSS----CBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCC----CEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 46899999999999999999999999976 66666533 3334999999999999999999999988853
No 94
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=113.57 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|++|+++ + | ||||+|.+.++|++|++.|||..+....
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~-----g----~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--K-----N----YGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--T-----T----EEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--C-----C----EEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 46899999999999999999999999999999998 2 4 9999999999999999999999887543
No 95
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=128.41 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=65.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG--~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
.++|||+|||+++|+++|+++|++|| .|.+|+|+.++ + |+++|||||+|.+.++|++||+.|||+.|......
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~t----g~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRAN----GQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTT----CCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCC----CccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 57999999999999999999999999 99999999997 3 45556999999999999999999999999864433
Q ss_pred eE
Q 026648 209 LV 210 (235)
Q Consensus 209 ~~ 210 (235)
+.
T Consensus 131 V~ 132 (156)
T 3n9u_C 131 VR 132 (156)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 96
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=127.01 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 129 pd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
+.++++|||+|||.++++++|+++|++||.|++|+|+.++++..+| ||||+|.+.++|++|++.|||..|......
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG----~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLG----TADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSC----CEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEee----EEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 3457899999999999999999999999999999999987433334 999999999999999999999988764434
Q ss_pred eEEE
Q 026648 209 LVVF 212 (235)
Q Consensus 209 ~~~~ 212 (235)
+.++
T Consensus 161 V~~a 164 (177)
T 2f3j_A 161 IQLV 164 (177)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4333
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=124.61 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--EEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCc----eEe
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--VRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQ----SNI 203 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~--vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~----~i~ 203 (235)
.+++|||+|||+++|+++|+++|++||.|.. |+|+.++ ++.. +|||||+|.+. +|++|++.|||. .|.
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~----rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLN----RGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSB----CSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCc----ceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 4689999999999999999999999999977 9999998 4433 44999999999 999999999999 777
Q ss_pred eeeeceEEE
Q 026648 204 ICLSNLVVF 212 (235)
Q Consensus 204 ~~r~~~~~~ 212 (235)
.....+.+.
T Consensus 97 gr~l~V~~a 105 (131)
T 2m2b_A 97 GKTINVEFA 105 (131)
T ss_dssp GCCCCCEEC
T ss_pred CEEEEEEEC
Confidence 644444443
No 98
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.9e-16 Score=116.06 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
+.++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++. +..|.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~--~~~~~ 81 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK---TGHSKGFGFVRFTEYETQVKVMSQ--RHMID 81 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS---SCSEEEEEEEEESSHHHHHHHHHS--CEEET
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC---CCCccceEEEEECCHHHHHHHHHc--CCeeC
Confidence 468999999999999999999999999999999999872 144556999999999999999984 44444
No 99
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=120.46 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=63.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
.++|||+|||.++|+++|+++|++||.|++|+|+..+ | ||||+|.+.++|++|++.|||+.+......+.+
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-----I----TAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS-----S----CEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4799999999999999999999999999999988643 4 999999999999999999999998864444444
Q ss_pred E
Q 026648 212 F 212 (235)
Q Consensus 212 ~ 212 (235)
+
T Consensus 81 a 81 (111)
T 1whx_A 81 A 81 (111)
T ss_dssp E
T ss_pred C
Confidence 3
No 100
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=4.2e-16 Score=131.65 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.+.+||||+|||+++||++|+++|++||.|++|+|+.++ + |+++|||||+|.+.++|++|++.|+|..+....
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t----g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT----RRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCC----CCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 346899999999999999999999999999999999987 3 345559999999999999999999999877533
No 101
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.8e-16 Score=115.36 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=61.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.+++|||+|||.++++++|+++|++||.|++|+++..+ | ||||+|.+.++|++|++.|||..+....
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK-----G----CCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 36899999999999999999999999999999998433 5 9999999999999999999999988543
No 102
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.5e-16 Score=120.07 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee-eeec
Q 026648 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII-CLSN 208 (235)
Q Consensus 131 ~~~tLfVgNLP~~-vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~-~r~~ 208 (235)
++++|||+|||++ +|+++|+++|++||.|++|+|+..+ | ||||+|++.++|++|++.|++..+.. .+.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-----S----QAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3689999999998 9999999999999999999998653 5 99999999999999999997654332 2333
Q ss_pred eEEEEe
Q 026648 209 LVVFYQ 214 (235)
Q Consensus 209 ~~~~~~ 214 (235)
.|-++.
T Consensus 95 ~V~~a~ 100 (112)
T 1x4f_A 95 KVDLSE 100 (112)
T ss_dssp EEEEEC
T ss_pred EEEECc
Confidence 344444
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3e-16 Score=116.44 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~----~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
++++|||+|||.++++++|+ ++|++||.|.+|+++.. |.++|||||+|.+.++|++|++.|||..+...
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------HHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 46899999999999999999 99999999999998742 12223999999999999999999999998753
No 104
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=3.2e-16 Score=118.49 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=62.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
+..|||+||++.+||++|+++|.+||+|++++++..+ | ||||+|.++++|++|+++|||.++......+.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~k-----G----faFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQ-----G----IALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCC-----c----EEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 5689999999999999999999999999999998743 5 999999999999999999999988853333333
Q ss_pred E
Q 026648 212 F 212 (235)
Q Consensus 212 ~ 212 (235)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 105
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=122.43 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=63.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 128 ppd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++...++|||+|||+++|+++|+++|++||.|.++.++.++ + |+++|||||+|.+.++|++||+ |||..|....
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPN----GKATGEGFVEFRNEADYKAALC-RHKQYMGNRF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTT----SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCC----CCCCeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 34456899999999999999999999999999986555554 3 4455699999999999999999 9999887543
Q ss_pred eceE
Q 026648 207 SNLV 210 (235)
Q Consensus 207 ~~~~ 210 (235)
..+.
T Consensus 96 i~V~ 99 (124)
T 1wel_A 96 IQVH 99 (124)
T ss_dssp BEEE
T ss_pred EEEE
Confidence 3333
No 106
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=112.96 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..++|||+|||.++|+++|+++|++||.|.+|+++. | ||||+|.+.++|++|++.|||..+....
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~----~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------D----YAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------S----CEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------C----EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 368999999999999999999999999999999983 3 9999999999999999999999987543
No 107
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8e-16 Score=117.17 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=61.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..++|||+|||.++++++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.|+|..|....
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-----G----YSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 36899999999999999999999999999999999874 5 9999999999999999999999888543
No 108
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-16 Score=112.40 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=59.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++|||+|||.++++++|+++|++||.|.+|+++.++ ++ .++|||||+|.+.++|++|++.++ ..+..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~~~~-~~~~g 68 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK----RSRGFGFVTFMDQAGVDKVLAQSR-HELDS 68 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSS----SCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCC----CcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence 479999999999999999999999999999999987 33 334499999999999999999888 65554
No 109
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.63 E-value=7.5e-16 Score=124.00 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=66.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
..++|||+|||.++|+++|+++|++||.|.+|+|+.++ ++. ++|||||+|.+.++|++|++.|||..|.... +.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~ 143 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE----SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE-LR 143 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTT----SCCEEEEEESBHHHHHHHHHHSTTEESSSSE-EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCc----cceEEEEEECCHHHHHHHHHHhCCCEECCeE-EE
Confidence 36899999999999999999999999999999999986 433 3449999999999999999999999887533 33
Q ss_pred EEEEe
Q 026648 210 VVFYQ 214 (235)
Q Consensus 210 ~~~~~ 214 (235)
|.++.
T Consensus 144 v~~a~ 148 (158)
T 2kn4_A 144 VQMAR 148 (158)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 33443
No 110
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=118.82 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=60.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..+|||+|||+++|+++|+++|++| .|.+|+|+.++.++ ++|||||+|.++++|++|| .|||..|..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~----~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGR----NNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCC----CCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCC----CCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 4799999999999999999999999 89999999987433 3349999999999999999 689988875
No 111
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=113.94 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..+++|||+|||.++|+++|+++|++||.|. ++++.++ .+| ||||+|.+.++|++|++.|||..|....
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~---~~g----~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG---PRR----RAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET---TTT----EEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC---CCc----EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3468999999999999999999999999997 7777653 224 9999999999999999999999887643
No 112
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=9.6e-16 Score=117.57 Aligned_cols=70 Identities=17% Similarity=0.308 Sum_probs=59.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++.++|||+|||.++|+++|+++|++||.|.+|+|+.++ ++..+| ||||+|.+.++|++|++.+ |..+..
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg----~afV~f~~~~~A~~Ai~~~-~~~l~g 93 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG----FGFVTFMDQAGVDKVLAQS-RHELDS 93 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTT----CEEEEESSHHHHHHHHHSS-CEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCc----EEEEEECCHHHHHHHHHHC-CCcCCC
Confidence 356899999999999999999999999999999999987 333334 9999999999999999886 455554
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=2.3e-16 Score=125.82 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++ ++ .++|||||+|.+.++|++|++.|||..|...
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g----~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK----ESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSS----SCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 46899999999999999999999999999999999886 43 3344999999999999999999999998754
No 114
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=113.37 Aligned_cols=70 Identities=30% Similarity=0.385 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.+.++|||+|||.++|+++|+++|++|+ +|+++.++ + |.++|||||+|.+.++|++|++.|||..|....
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRET----GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSS----CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCC----CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3468999999999999999999999874 77888876 3 345569999999999999999999999988643
No 115
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.62 E-value=1.3e-15 Score=124.52 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=66.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
++++|||+|||.++|+++|+++|++||.|++|+|+.++ + |.++|||||+|.+.++|++||+.|||+.|......|
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT----GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----SSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCC----CcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 36899999999999999999999999999999999986 3 345569999999999999999999999987644333
Q ss_pred EE
Q 026648 210 VV 211 (235)
Q Consensus 210 ~~ 211 (235)
.+
T Consensus 147 ~~ 148 (165)
T 1rk8_A 147 DW 148 (165)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 116
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=5.8e-16 Score=118.11 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=62.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~---I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+..++|||+|||+++|+++|+++|++||. |.+|+|+.++.+. ++|||||+|.+.++|++||+ |+|..+...
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~----~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGK----RRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTST----TCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCC----EeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 34689999999999999999999999988 8999999887433 34499999999999999999 999877643
No 117
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=3.6e-16 Score=110.99 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=59.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+|||+|||.++|+++|+++|++||.|.+|+++.++ ++ .++|||||+|.+.++|++|++ |+|..+..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTN----RHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSST----TSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC----CcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 59999999999999999999999999999999887 33 344599999999999999998 89988775
No 118
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.9e-15 Score=119.93 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=66.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
+++|||+|||.++|+++|+++|++||.|.+|+++.++ + |.++|||||+|.++++|++|++.|+|..+......+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~----~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT----GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC----CcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEE
Confidence 5799999999999999999999999999999999987 4 3455699999999999999999999998876444433
No 119
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=5.8e-16 Score=120.65 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG-~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..++|||+|||+++|+++|+++|++|| .|..++|+.++ ++| ||||+|.+.++|++||+.|||..+....
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~---~rG----faFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD---FDG----TGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS---SSC----CEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC---CCC----EEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 468999999999999999999999999 89999986543 224 9999999999999999999999988643
No 120
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=1.7e-15 Score=114.29 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=58.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
.++|||+|||.++|+++|+++|++||.|++|+|++ | ||||+|.+.++|++|++.|||..|...
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~----~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------D----YAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------S----CEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------C----EEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 58999999999999999999999999999999873 3 999999999999999999999988754
No 121
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=5.2e-16 Score=120.12 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=60.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..++|||+|||+++|+++|+++|++||.|++|+|+.+ | ||||+|.+.++|++||+.|||++|....
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------S----EEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------C----EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3589999999999999999999999999999999876 4 9999999999999999999999988644
No 122
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=117.30 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=61.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
..++|||+|||.++|+++|+++|++||.|++|+|+.++ ++.. +|||||+|.+.++|++||+. +|..|...
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS----RGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSC----CSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCc----CceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 35899999999999999999999999999999999986 3333 34999999999999999998 88887753
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=5.6e-16 Score=124.76 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~---I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
..++|||+|||+++|+++|+++|++||. |++|+|+.++. |+++|||||+|.++++|++||+ |||..|...
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~----g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE----GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS----SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 4689999999999999999999999999 89999999874 4555699999999999999999 999887753
No 124
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=1e-15 Score=118.68 Aligned_cols=70 Identities=11% Similarity=0.243 Sum_probs=62.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.++|||+|||.++|+++|+++|++||.|++|+|+.++ + |.++|||||+|.+.++|++|+ .|||..|....
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFS----GHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTT----SSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC----CCcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 5899999999999999999999999999999999986 3 344559999999999999999 89999987533
No 125
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-15 Score=110.96 Aligned_cols=65 Identities=23% Similarity=0.281 Sum_probs=59.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~f--G~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++++|||+|||.++|+++|+++|++| |.|.+|++.+ | ||||+|.+.++|++|++.|||..|....
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~-------g----~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR-------D----YAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS-------S----EEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC-------C----eEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 46899999999999999999999999 9999998752 4 9999999999999999999999987543
No 126
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=3e-16 Score=126.92 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
..++|||+|||+++||+||+++|++|| |++|+|+.++.+ +++|||||+|+++++|++|| .+|+..|...
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g----~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDG----RVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSS----CSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCC----CCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 467999999999999999999999999 779999998743 34449999999999999999 7899877753
No 127
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=119.28 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=58.2
Q ss_pred CCCeEEE--cCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceE
Q 026648 131 ASSTLFV--EGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSN 202 (235)
Q Consensus 131 ~~~tLfV--gNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i 202 (235)
++++||| +||++++|+++|+++|++||.|.+|.|+.++ | ||||+|.+.++|++|++.|||.++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r-----g----faFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----P----YSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-----S----CEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCEE
Confidence 4689999 7799999999999999999999999987643 5 999999999999999999999988
No 128
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=2.5e-15 Score=119.90 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=65.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
+++|||+|||.++|+++|+++|++||.|.+|+++.++ ++ .++|||||+|.++++|++|++.|+|..+......+.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTG----YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCC----ccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence 5899999999999999999999999999999999886 43 334499999999999999999999998875443333
No 129
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=2.1e-16 Score=115.95 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=63.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
++|||+|||.++++++|+++|++||.|++|+++.++. .|.++|||||+|.+.+ |++|++.|||..+......+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE---TKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS---SCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC---CCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 5899999999999999999999999999999998872 1334459999999999 9999999999998764434433
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=4.1e-15 Score=111.77 Aligned_cols=66 Identities=21% Similarity=0.410 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 130 d~~~tLfVgNLP~-~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.++++|||+|||. ++++++|+++|++||.|.+|++. +| ||||+|.+.++|++|++.|||..+....
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g----~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NA----FGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SS----EEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CC----EEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3578999999998 99999999999999999999984 14 9999999999999999999999887533
No 131
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=3.7e-15 Score=118.55 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=57.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceE-EEEEecCHHHHHHHHHHhcCceEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~f-aFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
-.|||+|||+.+|+++|+++|++||.|++|+|... . | | |||+|.+.++|+.|+++|||..|..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~-G----f~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----N-G----IQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----S-S----EEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----C-C----CEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 34689999999999999999999999999999753 2 4 8 9999999999999999999999975
No 132
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=115.66 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEe-eCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhc--CceEeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLV-SKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQ--GQSNIIC 205 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~-I~~vrl~-~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln--G~~i~~~ 205 (235)
.++|||+|||.++|+++|+++|++||. |++|+|+ .++ ++ .++|||||+|.+.++|++|++.|+ +..+...
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g----~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~ 82 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM----KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 82 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTT----TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCC----CcCcEEEEEecCHHHHHHHHHHhhCCCceecCC
Confidence 589999999999999999999999998 9999998 555 32 334499999999999999999996 4777653
No 133
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=3.2e-15 Score=114.76 Aligned_cols=64 Identities=34% Similarity=0.609 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
.+++|||+|||.++|+++|+++|++||.|++|+++ + | ||||+|.+.++|++|++.|||..+...
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--k-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--N-----G----FAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--T-----T----EEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--C-----C----EEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 46899999999999999999999999999999998 2 5 999999999999999999999998653
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=7.2e-15 Score=112.02 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=60.8
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~-vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
.+++|||+|||.+ +|+++|+++|++||.|++|+| . + | ||||+|.+.++|++|++.|||..|......+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~----~-g----~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--H----K-G----YAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--E----T-T----EEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--e----C-C----EEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 4689999999999 999999999999999999999 1 2 4 9999999999999999999999988644333
Q ss_pred E
Q 026648 210 V 210 (235)
Q Consensus 210 ~ 210 (235)
.
T Consensus 95 ~ 95 (110)
T 1wf1_A 95 N 95 (110)
T ss_dssp E
T ss_pred E
Confidence 3
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.8e-15 Score=111.15 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~-~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
++++|||+|||. ++|+++|+++|++||.|++|+|. + | ||||+|.+.++|++|++.|||..+......+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~-----g----~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--N-----A----FGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--T-----T----EEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--C-----C----EEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 368999999998 99999999999999999999985 1 4 9999999999999999999999888544444
Q ss_pred EEE
Q 026648 210 VVF 212 (235)
Q Consensus 210 ~~~ 212 (235)
.+.
T Consensus 78 ~~a 80 (96)
T 2kvi_A 78 EVS 80 (96)
T ss_dssp EEE
T ss_pred EEc
Confidence 443
No 136
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.59 E-value=2.6e-16 Score=118.17 Aligned_cols=70 Identities=20% Similarity=0.397 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHH---HhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD---ALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~---~LnG~~i~~ 204 (235)
.+++|||+|||.++++++|+++|++||.|.+|+|+.+++ |.++|||||+|.+.++|++|++ .|+|.+|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v 80 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT----GVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSCCCHHHHTTCCCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHhCCCeECCEEEEE
Confidence 358999999999999999999999999999999999873 3455699999999999999999 555555554
No 137
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=114.60 Aligned_cols=66 Identities=23% Similarity=0.413 Sum_probs=60.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++|||+|||.++|+++|+++|++||.|++|+++.+ .+| ||||+|.+.++|++|++.|||..+....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g----~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPG----FAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSS----EEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCC----EEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 48999999999999999999999999999999987 224 9999999999999999999999887544
No 138
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.8e-15 Score=118.89 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=65.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
++|||+|||.++|+++|+++|++||.|.+|+++.++.+ +++|||||+|.+.++|++|++.|+|..+......+.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN----KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 75 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCC----CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE
Confidence 48999999999999999999999999999999998743 3445999999999999999999999998764444443
No 139
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=1e-15 Score=132.51 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG--~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
..++|||+|||+++|+++|+++|++|| .|++|+|+.++ + |+++|||||+|.+.++|++||+.|||+.|.....
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~t----g~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN----GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTT----CCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCC----CccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 357999999999999999999999999 99999999997 4 4455699999999999999999999999886433
Q ss_pred ce
Q 026648 208 NL 209 (235)
Q Consensus 208 ~~ 209 (235)
.|
T Consensus 143 ~V 144 (229)
T 3q2s_C 143 VV 144 (229)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=112.48 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=57.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|..+ ... |.++|||||+|.+.++|++|++.|+|..|....
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQD----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EET----TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCC----CCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 46899999999999999999999999877655 222 344559999999999999999999999887543
No 141
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=2.8e-15 Score=119.46 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeE--EEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~--~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..++|||+|||+++|+++|+++|++| +|+ +|+|+.++.+ +++|||||+|.++++|++||+. ++..|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~G----rsrGfaFV~F~~~e~A~~Al~~-~~~~l~g 110 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEG----KITGEAFVQFASQELAEKALGK-HKERIGH 110 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSS----SSCSEEEEEESSTTHHHHHHTT-TTCCBTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCC----CCceEEEEEECCHHHHHHHHHH-CCCEECC
Confidence 35799999999999999999999999 788 8999998743 3444999999999999999985 6666654
No 142
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=111.97 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=58.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC-ceEeeeeec
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG-QSNIICLSN 208 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~-I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG-~~i~~~r~~ 208 (235)
..++|||+|||.++|+++|+++|++||. |..+.+. .+ | ||||+|.+.++|++|++.||| ..+......
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~~-----g----~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-KS-----G----YAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-ET-----T----EEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-CC-----C----EEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3689999999999999999999999999 5555553 22 4 999999999999999999999 888754333
Q ss_pred e
Q 026648 209 L 209 (235)
Q Consensus 209 ~ 209 (235)
+
T Consensus 77 v 77 (93)
T 2cqh_A 77 V 77 (93)
T ss_dssp E
T ss_pred E
Confidence 3
No 143
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=2.7e-15 Score=120.16 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee-e-eec
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII-C-LSN 208 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~-~-r~~ 208 (235)
..++|||+|||.++|+++|+++|++||.|++|+++.++. |.++|||||+|.+.++|++|++.|||..+.. | +..
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 357999999999999999999999999999999999874 3455699999999999999999999987764 3 344
Q ss_pred eEEEE
Q 026648 209 LVVFY 213 (235)
Q Consensus 209 ~~~~~ 213 (235)
.+.++
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 44444
No 144
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=108.15 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=57.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
++++|||+|| ++|+++|+++|++||.|++|+|...+ | ||||+|.+.++|++|++.|||..|...
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-----N----CAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCC-----C----EEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4689999996 99999999999999999999996332 5 999999999999999999999988753
No 145
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=110.48 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=60.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEE-EeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vr-l~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.+++|||+|||+++|+++|+++|++||.|++|+ |+.++. .| .|||+|.+.++|++|++.|||+.|....
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TA----VVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SE----EEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CC----EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 368999999999999999999999999999995 777752 13 6999999999999999999999987533
No 146
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.1e-14 Score=115.33 Aligned_cols=72 Identities=26% Similarity=0.332 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||.++|+++|+++|++||.|.+++++.++ + |.++|||||+|.+.++|++|++.|||..+....
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT----GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT----CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC----CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 46799999999999999999999999999999999986 3 345569999999999999999999999987543
No 147
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=8.2e-15 Score=117.72 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=58.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceE-EEEEecCHHHHHHHHHHhcCceEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~f-aFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
-.|||+||++.+|+++|+++|++||.|++|+|+.+. + | | |||+|.+.++|++|+++|||+.|..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~-g----fqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---N-Q----FQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---T-E----EEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---C-C----cEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 468899999999999999999999999999988653 2 3 7 9999999999999999999999986
No 148
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.7e-15 Score=113.92 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=58.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I----~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.++++|||+|||.++|+++|+++|++||.| ..+++.. |.++|||||+|.+.++|++|++.|||..|..
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-------g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT-------GRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC-------SSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC-------CccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 357899999999999999999999999999 5555552 2233399999999999999999999998864
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.57 E-value=4.7e-15 Score=118.91 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=60.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..++|||+|||+++|+++|+++|++||.|++|+|+.+. +| ||||+|.+.++|++|++.|||..|..
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g----~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP----PG----FAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS----CS----EEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC----Cc----EEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46899999999999999999999999999999999872 24 99999999999999999999998864
No 150
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=2.8e-15 Score=108.85 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=59.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~f----G-------~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
.++|||+|||.++|+++|+++|++| | .|.++++..++ | ||||+|.+.++|++|+ .|||.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-----g----~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-----S----EEEEEESSHHHHHHHG-GGTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-----c----EEEEEcCCHHHHHHHH-hcCCC
Confidence 5899999999999999999999999 8 89999998764 5 9999999999999999 99999
Q ss_pred eEeeee
Q 026648 201 SNIICL 206 (235)
Q Consensus 201 ~i~~~r 206 (235)
.+....
T Consensus 76 ~~~g~~ 81 (87)
T 2hzc_A 76 IFQGQS 81 (87)
T ss_dssp EETTEE
T ss_pred EECCeE
Confidence 987643
No 151
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=3.4e-15 Score=124.37 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
...+|||+||++.+|+++|+++|++||.|++|+|..++ .+| ||||+|++.++|++|++.|||..|..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rg----fAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQF----QALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCE----EEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCC----EEEEEECCHHHHHHHHHHhCCCEecC
Confidence 34679999999999999999999999999999997653 234 99999999999999999999999964
No 152
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=5e-16 Score=116.41 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
..++|||+|||.++|+++|+++|++||.|.+ +++.++ ++..+| ||||+|.+.++|++|++ |||..|..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g----~afV~f~~~~~a~~A~~-l~g~~~~g 84 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRK----FGYVDFESAEDLEKALE-LTGLKVFG 84 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTT----EEEEEESSHHHHHHHHH-GGGCCBTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCc----EEEEEECCHHHHHHHHh-cCCcEECC
Confidence 4689999999999999999999999999988 556554 333334 99999999999999999 99998874
No 153
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=118.12 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=60.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEE--------EEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEV--------RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQS 201 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~v--------rl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~ 201 (235)
.++++|||+|||+++|+++|+++|++||.|.++ ++.. + |.++|||||+|.+.++|++|++.|||+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~--~----g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK--E----GRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE--E----TTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc--C----CCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 346899999999999999999999999998874 3332 2 3344599999999999999999999999
Q ss_pred Eeeeeece
Q 026648 202 NIICLSNL 209 (235)
Q Consensus 202 i~~~r~~~ 209 (235)
|......+
T Consensus 117 ~~g~~l~V 124 (143)
T 3egn_A 117 LFGKPMVV 124 (143)
T ss_dssp ETTEECEE
T ss_pred eCCcEEEE
Confidence 98544333
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=6.4e-15 Score=108.23 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=58.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
+++|||+|||.++++++|+++|++| .|++|++... +| ||||+|.++++|++|++.|||..+.....
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~-----~g----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRN-----KR----TAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGG-----GT----EEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCC-----Cc----EEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 5799999999999999999999999 9999998522 24 99999999999999999999999886443
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=7.5e-15 Score=117.76 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=84.4
Q ss_pred CcCCCCCCCC-CcccCCCCCCCCCCCCccccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 026648 73 ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (235)
Q Consensus 73 ~~s~~~g~~~-r~~gGg~~G~~~~~r~~~g~gg~~~~~~~~~r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteedL~~ 151 (235)
|+.|.+.+.+ .++ .++|..+.++.+...-. ....++...++|||+|||.++|+++|++
T Consensus 55 fV~f~~~~~A~~A~--~~~~~~~~g~~i~v~~~-------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~ 113 (172)
T 2g4b_A 55 FLEFRSVDETTQAM--AFDGIIFQGQSLKIRRP-------------------HDYQPLPGAHKLFIGGLPNYLNDDQVKE 113 (172)
T ss_dssp EEEESSHHHHHHHG--GGTTCEETTEECEEECC-------------------SSCCCCTTTTCEEEECCCTTCCHHHHHH
T ss_pred EEEeCCHHHHHHHH--HhCCcEecCceeeecCC-------------------cccCCCCCCCEEEEEcCCCcCCHHHHHH
Confidence 6667665444 455 57777777665432211 0011122357999999999999999999
Q ss_pred hhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 152 IFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 152 lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
+|++||.|.+|+++.++ + |.++|||||+|.+.++|++|++.|||..+......+.
T Consensus 114 ~f~~~G~v~~v~i~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 114 LLTSFGPLKAFNLVKDSAT----GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp HHHTTSCEEEEEEEECTTT----CSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred HHHhcCCceEEEEEecCCC----CCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 99999999999999986 3 3455699999999999999999999999986444433
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.1e-16 Score=122.56 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I----~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
...+|||+|||+++|+++|+++|++||.| .+|+|+.+++ |+++|||||+|.+.++|++||+. ++..|..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~----gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g 94 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD----GRPTGDAFVLFACEEYAQNALRK-HKDLLGK 94 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT----SCEEEEEEECCSSHHHHHHHHTT-TTEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHHh-CCCeeCC
Confidence 35799999999999999999999999875 6899998864 45556999999999999999987 8876664
No 157
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=1e-15 Score=108.44 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=58.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
||||+|||.++|+++|+++|++||.|.+|+++.++ ++ .++|||||+|.+.++|++|++. +|..+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 67 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN----KRRGFCFITFKEEEPVKKIMEK-KYHNVGL 67 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCS----SSCCCEEEECSSSHHHHHHHTT-SSCCBTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC----CcCCEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 69999999999999999999999999999999886 33 3344999999999999999985 7776654
No 158
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=1.3e-14 Score=107.70 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=54.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+.++|||+|||+++|+++|+++|++||.|++|+|+.+ ++| ||||+|+++++|+ +|+|..+....
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srG----faFV~F~~~~~A~----~~~~~~~~~~g 73 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRA----FAFVTFADDKVAQ----SLCGEDLIIKG 73 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCS----EEEEEESCHHHHH----HHTTCEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCC----EEEEEECCHHHHH----HHcCCCcccCC
Confidence 3589999999999999999999999999999999975 224 9999999999998 36787666433
No 159
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=9e-15 Score=117.12 Aligned_cols=72 Identities=22% Similarity=0.418 Sum_probs=63.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++.... +.++|||||+|.+.++|++|++.|+|..+..
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 74 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP-PQSKGCCFVTFYTRKAALEAQNALHNMKVLP 74 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS-CEEEEEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC-CCcceEEEEEECCHHHHHHHHHHhcCcEEcc
Confidence 58999999999999999999999999999999999883210 1455699999999999999999999988764
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.55 E-value=7e-15 Score=120.28 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 129 pd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
++..++|||+|||.++|+++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++. +|..+......
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN---TKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC---CCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 34578999999999999999999999999999999999872 134556999999999999999987 77766654333
Q ss_pred e
Q 026648 209 L 209 (235)
Q Consensus 209 ~ 209 (235)
+
T Consensus 86 v 86 (196)
T 1l3k_A 86 P 86 (196)
T ss_dssp E
T ss_pred e
Confidence 3
No 161
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.2e-16 Score=120.67 Aligned_cols=74 Identities=23% Similarity=0.274 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSN 202 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~--------vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i 202 (235)
+++|||+|||.++++++|+++|++||.|.+ |+|+.++ ++ .++|||||+|.+.++|++|++.|||..+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG----KLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 589999999999999999999999999999 8999886 33 3334999999999999999999999988
Q ss_pred eeeeece
Q 026648 203 IICLSNL 209 (235)
Q Consensus 203 ~~~r~~~ 209 (235)
......+
T Consensus 83 ~g~~l~V 89 (116)
T 2lcw_A 83 SGNPIKV 89 (116)
Confidence 8543333
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=7.6e-15 Score=123.88 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=64.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
.++|||+|||+++|+++|+++|++||.|++|+|+.++++ ++|||||+|.+.++|++||+.|||+.|......
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-----~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~ 174 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-----SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 174 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-----EEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-----CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 478999999999999999999999999999999998743 344999999999999999999999998764333
No 163
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=1.4e-14 Score=136.35 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=66.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+.++|||+|||+++|+++|+++|++||.|++|+|+.++ ++. ++|||||+|.+.++|++||++|||+.|......|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~----~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGK----PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCC----ccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 46899999999999999999999999999999999986 433 3449999999999999999999999987644444
Q ss_pred EE
Q 026648 210 VV 211 (235)
Q Consensus 210 ~~ 211 (235)
.+
T Consensus 177 ~~ 178 (437)
T 3pgw_S 177 DV 178 (437)
T ss_pred EE
Confidence 33
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.9e-14 Score=122.14 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=61.8
Q ss_pred CCeEEEcCCC-CCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 132 SSTLFVEGLP-SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 132 ~~tLfVgNLP-~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
+++|||+||| .++|+++|+++|++||.|.+|+|+.++ + | ||||+|.+.++|++||+.|||+.+.....
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~-g----~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---P-G----AAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---T-T----CEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---C-C----EEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 6899999999 899999999999999999999998764 2 4 99999999999999999999999886433
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.54 E-value=1.9e-14 Score=119.46 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
..++|||+|||.++|+++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++.|||..|......+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V 199 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT---TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 199 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC---CCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEE
Confidence 357999999999999999999999999999999999861 1345559999999999999999999999987644333
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=8.6e-15 Score=116.88 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=61.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHH---hcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDA---LQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~---LnG~~i~~~r 206 (235)
+++|||+|||.++|+++|+++|++||.|.+|+|+.++ ++. ++|||||+|.+.++|++|++. |+|..|.+.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR----SRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKR 77 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSS----CCSCEEEEESSTHHHHHHHHSCCEETTEECCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCC----ccceEEEEEccHHHHHHHHhcccccCCeEccccc
Confidence 5899999999999999999999999999999999986 433 334999999999999999997 6676666543
No 167
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=105.32 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=57.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
.++|||+|||.++|+++|+++|++||.|.+| +.++. . |. ||||+|.+.++|++|++ |+|..|.....
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~--~-g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l 74 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD--K-GV---FAIVEMGDVGAREAVLS-QSQHSLGGHRL 74 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS--S-CC---EEEEEESSHHHHHHHHT-CSCCEETTEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC--C-Cc---EEEEEECCHHHHHHHHh-cCCeEECCEEE
Confidence 5799999999999999999999999999987 44431 1 22 99999999999999999 99999886433
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.52 E-value=4.7e-14 Score=112.43 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=63.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.++|||+|||.++++++|+++|++||.|.+++++.++ + |.++|||||+|.+.++|++|++.|||..+..
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT----GRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCC----CCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 5799999999999999999999999999999999987 3 3445599999999999999999999998875
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.52 E-value=2.6e-14 Score=118.57 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=61.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+++|||+|||.++|+++|+++|++||.|++|+|+.++ ++..+| ||||+|.+.++|++|++.|+|..+....
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g----~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKG----FAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCS----EEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCc----eEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 5899999999999999999999999999999999887 433334 9999999999999999999998877533
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.52 E-value=2.5e-14 Score=113.42 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=64.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.++|||+|||.++++++|+++|++||.|.+++++.++ + |.++|||||+|.+.++|++|++.|||..+....
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT----GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCC----CCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 5799999999999999999999999999999999887 3 344559999999999999999999999887643
No 171
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=3e-14 Score=116.72 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=87.5
Q ss_pred CcCCCCCCCC-CcccCCCCCCCCCCCCccccCCCCCCCCCC-CCcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 026648 73 ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGPSAK-DRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVA 150 (235)
Q Consensus 73 ~~s~~~g~~~-r~~gGg~~G~~~~~r~~~g~gg~~~~~~~~-~r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteedL~ 150 (235)
|+.|.+.+.+ .++ .++|..+.++.+...-......... ................+...++|||+|||.++++++|+
T Consensus 55 fV~F~~~~~A~~Al--~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 132 (198)
T 2yh0_A 55 FLEFRSVDETTQAM--AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVK 132 (198)
T ss_dssp EEEESCSHHHHHHG--GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHH
T ss_pred EEEeCCHHHHHHHH--HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6777776554 455 5788877777654322111000000 00000000000111222456899999999999999999
Q ss_pred HhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 151 HIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 151 ~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
++|++||.|.+|+++.++ + |.++|||||+|.+.++|++|++.|||..|......+
T Consensus 133 ~~f~~~G~v~~~~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 133 ELLTSFGPLKAFNLVKDSAT----GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp HHHHTBSCEEEEEEEECTTT----CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred HHHHHcCCccEEEEeecCCC----CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 999999999999999986 3 345559999999999999999999999997544333
No 172
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.50 E-value=1.4e-14 Score=122.98 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCe--EEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGY--KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I--~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++++|||+|||+++|+++|+++|++||.| ++|+++.++++.+ |||||+|.+.++|.+||+.|||+.|..
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~-----g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERS-----SSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSS-----EEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCc-----eEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 36899999999999999999999999999 8999998873322 399999999999999999999999876
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=5.7e-14 Score=110.16 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=57.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 130 d~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
.++++|||+|| ++|+++|+++|++||.|++|+|...+ | ||||+|.+.++|++|++.|||..+...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~k-----g----~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-----N----CAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34789999996 69999999999999999999997332 5 999999999999999999999988653
No 174
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=3.3e-14 Score=121.19 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~-~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++++|||+|||. ++++++|+++|++||.|++|+|+.++ + | ||||+|.+.++|++|++.|||..+....
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~-g----~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---K-E----NALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---S-C----CEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---C-C----EEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 468999999999 99999999999999999999999886 2 4 9999999999999999999999887533
No 175
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=6.3e-14 Score=121.82 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
.+++|||+|||.++|+++|+++|++||.|.+|+|..++ | ||||+|.+.++|++|++.|+|..|......+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-----g----~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-----G----FGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----c----EEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 46899999999999999999999999999999997654 5 99999999999999999999999876443333
Q ss_pred EEEecccccccCcce
Q 026648 211 VFYQIACEYISDKIC 225 (235)
Q Consensus 211 ~~~~~~~~~~~~~~~ 225 (235)
+ ....+...+.++.
T Consensus 92 ~-a~~~~~l~v~nl~ 105 (261)
T 3sde_A 92 F-ATHGAALTVKNLS 105 (261)
T ss_dssp E-CCCSSEEEEESCC
T ss_pred e-cccCCcccccCCC
Confidence 3 3323333444443
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=1.7e-13 Score=119.09 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~----~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
++++|||+|||.++|+++|+ ++|++||.|++|+|+.+ |+++|||||+|.+.++|++|++.|||..|..+.
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC------CCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 46899999999999999977 89999999999998863 233349999999999999999999999988744
Q ss_pred eceEEE
Q 026648 207 SNLVVF 212 (235)
Q Consensus 207 ~~~~~~ 212 (235)
..+.+.
T Consensus 82 l~v~~a 87 (282)
T 3pgw_A 82 MRIQYA 87 (282)
T ss_pred EEEEEe
Confidence 444443
No 177
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.1e-13 Score=113.21 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=63.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
.++|||+|||.++|+++|+++|++||.|++|+|+.++ + |.++|||||+|.+.++|++|++. +|..|......+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v 177 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS----GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEV 177 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEE
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC----CCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEE
Confidence 5899999999999999999999999999999999986 3 34556999999999999999987 788777543333
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=6.3e-13 Score=115.50 Aligned_cols=65 Identities=35% Similarity=0.588 Sum_probs=60.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
++++|||+|||.++|+++|+++|++||.|++|+|+.++ +| ||||+|.+.++|++|++.|||+.+.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g----~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HD----IAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----Cc----EEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 46899999999999999999999999999999999765 24 9999999999999999999999998
No 179
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=100.86 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=54.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+++|||+|||.++|+++|+++|++||.|++|+|+.+ .+| ||||+|.+.++|++ +++..+......+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g----~afV~f~~~~~a~~----~~~~~~~~~g~~l 70 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRA----FAFVTFADDQIAQS----LCGEDLIIKGISV 70 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCS----CCEEECSCHHHHHH----TTTCEEEETTEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCC----EEEEEECCHHHHHH----HhcCCceeCCEEE
Confidence 589999999999999999999999999999999865 224 99999999999974 4666554433333
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=4.9e-14 Score=112.44 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=61.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
.++|||+|||.++|+++|+++|++||.|.+|+++.++ + |.++|||||+|.+.++|++|++ ++|..+...
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT----GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS----STTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC----CccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 5799999999999999999999999999999999986 3 3444599999999999999998 788777653
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=8.4e-14 Score=122.23 Aligned_cols=63 Identities=24% Similarity=0.369 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCC---------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 026648 131 ASSTLFVEGLPSDC---------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQS 201 (235)
Q Consensus 131 ~~~tLfVgNLP~~v---------teedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~ 201 (235)
.++||||+|||.++ +|++|+++|++||.|++|+|+..+ | ||||+|.+.++|+.|+++|+|..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-----G----~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-----N----CGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-----C----EEEEEeCCHHHHHHHHHHhCCCE
Confidence 36899999999998 799999999999999999999764 5 99999999999999999999999
Q ss_pred E
Q 026648 202 N 202 (235)
Q Consensus 202 i 202 (235)
|
T Consensus 204 l 204 (240)
T 3u1l_A 204 L 204 (240)
T ss_dssp C
T ss_pred E
Confidence 9
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=2.1e-13 Score=114.90 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=59.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+++ |.++|||||+|++.++|++|++.++ ..+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G 176 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETPG-QKYKE 176 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCTT-CEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhCC-CeECC
Confidence 47999999999999999999999999999999999874 3455699999999999999998765 45554
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=103.87 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=61.4
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHhhcCC-CCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 132 SST-LFVEGLPSDCSRRE----VAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 132 ~~t-LfVgNLP~~vteed----L~~lF~~f-G~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+.| |||+|||+.+++++ |+++|++| |.|.+|. +| ||||+|.+.++|++|++.|||+.+..
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------gG----~AfV~F~~~esA~~A~~~l~G~~l~g- 73 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------GC----SAILRFINQDSAERAQKRMENEDVFG- 73 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------TT----CEEEEESSHHHHHHHHHHHTTCCSSS-
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------cC----EEEEEECCHHHHHHHHHHhcCCccCC-
Confidence 456 99999999999998 55899999 5999981 15 99999999999999999999999885
Q ss_pred eeceEEEEecccccccC
Q 026648 206 LSNLVVFYQIACEYISD 222 (235)
Q Consensus 206 r~~~~~~~~~~~~~~~~ 222 (235)
|...+-++..+...++.
T Consensus 74 r~i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 74 NRIIVSFTPKNRELCET 90 (96)
T ss_dssp SCCEEESSCCSCCCCCC
T ss_pred ceEEEEecCCCcceeEe
Confidence 44444455545555443
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=2.8e-13 Score=109.25 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=75.7
Q ss_pred CcCCCCCCCC-CcccCCCCCCCCCCCCccccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 026648 73 ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (235)
Q Consensus 73 ~~s~~~g~~~-r~~gGg~~G~~~~~r~~~g~gg~~~~~~~~~r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteedL~~ 151 (235)
|+.|.+.+.+ .++ .++|..+.++.+...-... .........++|||+|||.++|+++|++
T Consensus 58 fV~f~~~~~a~~A~--~l~g~~~~g~~l~v~~~~~-----------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~ 118 (175)
T 1fje_B 58 YVDFESAEDLEKAL--ELTGLKVFGNEIKLEKPKG-----------------RDSKKVRAARTLLAKNLSFNITEDELKE 118 (175)
T ss_dssp EEEESSHHHHHHHH--HGGGEEETTEEEEEECCCC-----------------SSCSTTGGGGEEEEESCCSSCCHHHHHH
T ss_pred EEEECCHHHHHHHH--hcCCCEeCCeEEEEecCCC-----------------ccccccccCCEEEEeCCCCCCCHHHHHH
Confidence 6667665444 455 3777777776553321111 0011122368999999999999999999
Q ss_pred hhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 152 lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
+|++||.|..+ ...+ .++|||||+|.+.++|++|++.|||..|....
T Consensus 119 ~F~~~g~v~~~----~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 119 VFEDALEIRLV----SQDG----KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp HCTTCSEEEEE----CSSS----SCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred HHHhcCeEEEe----cCCC----CCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 99999977655 3332 23339999999999999999999999888643
No 185
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1e-13 Score=111.89 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=63.0
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecC----HHH----HHHHHH--Hh
Q 026648 133 STLFVEGL----PSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVS----PAH----AATAMD--AL 197 (235)
Q Consensus 133 ~tLfVgNL----P~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s----~~~----A~~Ai~--~L 197 (235)
++|||+|| |+.+++.+|+++|++||.|.+|+++.|+ + |.|+|||||+|.+ +++ |.+|++ .|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~T----g~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNS----ALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTT----CCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC----CceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 68999999 9999999999999999999999999999 4 5667799999996 433 788988 78
Q ss_pred cCceEeeeeeceE
Q 026648 198 QGQSNIICLSNLV 210 (235)
Q Consensus 198 nG~~i~~~r~~~~ 210 (235)
+|..|+.+...+.
T Consensus 79 ng~~I~Gr~irV~ 91 (136)
T 2j8a_A 79 SGCFIMGFKFEVI 91 (136)
T ss_dssp TCEEETTEEEEEE
T ss_pred cCCeecCcEEEEE
Confidence 9999997555443
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.43 E-value=6.8e-13 Score=101.96 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 131 ASSTLFVEGLPS-----DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 131 ~~~tLfVgNLP~-----~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
++++|+|+||.. +-++++|+++|++||.|++|+|+.++.. +++++|||||+|.+.++|++|++.|||..+..
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFERVESAIKAVVDLNGRYFGG- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--CTTTSEEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--CCCCcEEEEEEECCHHHHHHHHHHHCCCEECC-
Confidence 478999999963 3479999999999999999999988621 12345599999999999999999999999874
Q ss_pred eeceEEEEec
Q 026648 206 LSNLVVFYQI 215 (235)
Q Consensus 206 r~~~~~~~~~ 215 (235)
|...+.+++.
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 5555666653
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=1.6e-13 Score=113.19 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=62.6
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 132 SSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 132 ~~tLfVgNLP~-~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
+++|||+|||. ++++++|+++|++||.|.+|+++.++ + | ||||+|.+.++|++|++.|||..+......+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~-g----~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 73 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---K-E----NALVQMADGNQAQLAMSHLNGHKLHGKPIRI 73 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---S-S----CCEEECTTTHHHHHHHHHHTTCCCSSCCCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---C-C----EEEEEECCHHHHHHHHHHhCCCeecCeEEEE
Confidence 57999999999 99999999999999999999999876 2 4 9999999999999999999999887543333
No 188
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=2.6e-13 Score=124.76 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=58.7
Q ss_pred CCCCeEEEcC--CCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 130 DASSTLFVEG--LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 130 d~~~tLfVgN--LP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
.++++|||+| |++++||++|+++|++||.|++|+++.+| | ||||+|++.++|++||++|||..+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~k-----g----faFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----P----YSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTC-----S----EEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCccc
Confidence 3478999999 68999999999999999999999887532 5 9999999999999999999999984
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.41 E-value=4.5e-13 Score=116.50 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDC-SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~v-teedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
..++|||+|||.++ |+++|+++|++||.|.+|+|+.+++ |.++|||||+|.+.++|.+|++.|||..+.... ..
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~ 257 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSH-LR 257 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-CE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE-EE
Confidence 36899999999995 9999999999999999999999874 344559999999999999999999999997543 33
Q ss_pred EEEEe
Q 026648 210 VVFYQ 214 (235)
Q Consensus 210 ~~~~~ 214 (235)
+.+++
T Consensus 258 v~~a~ 262 (284)
T 3smz_A 258 VSFCA 262 (284)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 33433
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.38 E-value=8e-13 Score=108.95 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeece
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNL 209 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG-~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~ 209 (235)
++++|||+|||.++++++|+++|++|| .|.+|+++.+. + | ||||+|.+.++|++|++.|||..+...+...
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~-g----~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---R-K----MALIQMGSVEEAVQALIDLHNHDLGENHHLR 190 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---S-S----CEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---C-c----EEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence 368999999999999999999999999 99999997653 2 4 9999999999999999999999997333333
Q ss_pred E
Q 026648 210 V 210 (235)
Q Consensus 210 ~ 210 (235)
+
T Consensus 191 v 191 (198)
T 1qm9_A 191 V 191 (198)
T ss_dssp E
T ss_pred E
Confidence 3
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.38 E-value=7.4e-13 Score=115.05 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=61.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
+++|||+|||.++|+++|+++|++||.|.+|+|+.+++ |.++|||||+|.+.++|.+|++.||+..+..
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----GRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT----SCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC----CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 46999999999999999999999999999999999964 3455599999999999999999996655553
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=1.1e-13 Score=111.52 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=58.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeec
Q 026648 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSN 208 (235)
Q Consensus 129 pd~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~ 208 (235)
+...++|||+|||.++|+++|+++|++||.+..+.+...+.+..+| ||||+|.+.++|++|+ .|+|..+......
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g----~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 84 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRK----FGYVDFESAEDLEKAL-ELTGLKVFGNEIK 84 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTT----EEEEEESSHHHHHHHH-HGGGEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCcccc----EEEEEECCHHHHHHHH-hcCCCEeCCeEEE
Confidence 3446899999999999999999999999987663322222322334 9999999999999999 5999988854333
Q ss_pred e
Q 026648 209 L 209 (235)
Q Consensus 209 ~ 209 (235)
+
T Consensus 85 v 85 (175)
T 1fje_B 85 L 85 (175)
T ss_dssp E
T ss_pred E
Confidence 3
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.37 E-value=6.6e-13 Score=115.91 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 131 ~~~tLfVgNLP~~-vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
..++|||+|||.+ +|+++|+++|++||.|.+|+|+.+... .|.++|||||+|.+.++|++|+ .|||..|....
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~ 282 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE--HSFNNCCAFMVFENKDSAERAL-QMNRSLLGNRE 282 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETTEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc--CCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcE
Confidence 4689999999999 999999999999999999999988640 1234459999999999999999 99999887533
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.36 E-value=7.2e-13 Score=106.10 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=59.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~f----G-------~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
+++|||+|||.++|+++|+++|++| | .|.++++..++ | ||||+|.++++|++|+ .|+|.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~-----g----~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT-----T----EEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC-----C----EEEEEeCCHHHHHHHH-HhCCc
Confidence 5899999999999999999999999 6 78888877553 5 9999999999999999 89999
Q ss_pred eEeeeeece
Q 026648 201 SNIICLSNL 209 (235)
Q Consensus 201 ~i~~~r~~~ 209 (235)
.+......+
T Consensus 74 ~~~g~~i~v 82 (172)
T 2g4b_A 74 IFQGQSLKI 82 (172)
T ss_dssp EETTEECEE
T ss_pred EecCceeee
Confidence 887644333
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=1.8e-12 Score=99.53 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=65.5
Q ss_pred CCeEEEcCC--CCCCC--------HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 026648 132 SSTLFVEGL--PSDCS--------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQS 201 (235)
Q Consensus 132 ~~tLfVgNL--P~~vt--------eedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~ 201 (235)
++.|.+.|+ |.++. ++||+++|++||.|++|+|+.++.... +.++||+||+|.+.++|++|+++|||..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 679999998 44443 468999999999999999998873211 1234499999999999999999999998
Q ss_pred EeeeeeceEEEEec
Q 026648 202 NIICLSNLVVFYQI 215 (235)
Q Consensus 202 i~~~r~~~~~~~~~ 215 (235)
+.. |...|.+++.
T Consensus 84 f~G-R~i~v~~~~~ 96 (105)
T 3v4m_A 84 FAN-RVVVTKYCDP 96 (105)
T ss_dssp ETT-EECEEEEECH
T ss_pred eCC-CEEEEEEeCH
Confidence 874 6666777763
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.3e-12 Score=98.04 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=60.5
Q ss_pred CCCeEEEcCCCCCCC-----------HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 026648 131 ASSTLFVEGLPSDCS-----------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199 (235)
Q Consensus 131 ~~~tLfVgNLP~~vt-----------eedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG 199 (235)
++++|+|.||..... +++|+++|++||.|++|.| .++. .+| ||||+|.+.++|++|++.|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~--~~G----~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH--PDG----VASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC--TTC----EEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC--CCE----EEEEEECCHHHHHHHHHHcCC
Confidence 478999999944432 6899999999999999966 4542 334 999999999999999999999
Q ss_pred ceEeeeeeceEEEEe
Q 026648 200 QSNIICLSNLVVFYQ 214 (235)
Q Consensus 200 ~~i~~~r~~~~~~~~ 214 (235)
..+.. +...+.+++
T Consensus 87 ~~~~g-r~l~v~~a~ 100 (112)
T 2dit_A 87 RWFGG-RQITAQAWD 100 (112)
T ss_dssp CEETT-EECEEEECC
T ss_pred CEECC-cEEEEEEeC
Confidence 99874 444454544
No 197
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=1.8e-12 Score=112.64 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=63.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
.++|||+|||.++|+++|+++|++||.|.+++++.++ + |.++|||||+|.+.++|++|++.|+|..+...
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT----GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC----CccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4799999999999999999999999999999999886 3 44556999999999999999999999988753
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.36 E-value=1.7e-12 Score=110.51 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG-~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
++++|||+|||.++++++|+++|++|| .|.+|+++.+. + | ||||+|.+.++|++|++.|||..+.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~-g----~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---R-K----MALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---T-T----CEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---C-c----EEEEEECCHHHHHHHHHHHCCCccC
Confidence 368999999999999999999999999 99999997642 2 4 9999999999999999999999987
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.34 E-value=1.8e-12 Score=113.21 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=61.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLV 210 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG-~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~ 210 (235)
.++|||+|||.++++++|+++|++|| .|.+|+|+.++.+...| ||||+|.+.++|++|++.|+|..+......+.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRR----FAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CC----EEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcce----EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 57999999999999999999999999 99999999887433334 99999999999999999999999976443333
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=7.9e-12 Score=98.21 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=67.4
Q ss_pred CCCeEEEcCCC--C---CCCHHHHHHhhcCCCCeEEEEEeeCCC-CCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 131 ASSTLFVEGLP--S---DCSRREVAHIFRPFVGYKEVRLVSKES-RHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 131 ~~~tLfVgNLP--~---~vteedL~~lF~~fG~I~~vrl~~dk~-~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++++|++.|+- . +-.++||++.|++||.|.+|+|+.++. ....+.++||+||+|.+.++|++|++.|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 36899999993 2 224789999999999999999998862 1112345569999999999999999999999887
Q ss_pred eeeceEEEEec
Q 026648 205 CLSNLVVFYQI 215 (235)
Q Consensus 205 ~r~~~~~~~~~ 215 (235)
.|...|.+++.
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 46677777774
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.30 E-value=2.3e-12 Score=105.41 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=57.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~f----G-------~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
+++|||+|||.++|+++|+++|++| | .|.++++...+ | ||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~-----g----~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT-----T----EEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC-----C----EEEEEeCCHHHHHHHH-HhcCC
Confidence 5899999999999999999999999 5 67777765443 5 9999999999999999 89999
Q ss_pred eEeeeeece
Q 026648 201 SNIICLSNL 209 (235)
Q Consensus 201 ~i~~~r~~~ 209 (235)
.+......+
T Consensus 74 ~~~g~~i~v 82 (198)
T 2yh0_A 74 IFQGQSLKI 82 (198)
T ss_dssp EETTEEEEE
T ss_pred EEcCceEEE
Confidence 887644333
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.20 E-value=5.1e-12 Score=96.69 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=55.0
Q ss_pred EEcCCCCCCCHHHHHHhh------------cCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 136 FVEGLPSDCSRREVAHIF------------RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 136 fVgNLP~~vteedL~~lF------------~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
.+.|||.++++++|++.| ++||.|++|+|+.++. |+++|||||+|.++++|++|++.|||..+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 467888888888887776 9999999999998764 345569999999999999999999999887
Q ss_pred e
Q 026648 204 I 204 (235)
Q Consensus 204 ~ 204 (235)
.
T Consensus 95 G 95 (104)
T 1jmt_A 95 G 95 (104)
T ss_dssp T
T ss_pred C
Confidence 5
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=4.6e-10 Score=89.05 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=58.2
Q ss_pred CCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecC-HHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS-PAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~-vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s-~~~A~~Ai~~LnG~~i~~~r 206 (235)
+..|||+||+.+ +++++|+++|++||.|+.|.++.+.. .|||+|.+ ..+|++|+++|+.-.+.++.
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 689999999999 99999999999999999999998863 79999999 89999999999744444433
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=4.8e-10 Score=85.60 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=50.3
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 026648 132 SSTLFVEGLP-------SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQ 200 (235)
Q Consensus 132 ~~tLfVgNLP-------~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~ 200 (235)
.++|-|.-.. .++++++|+++|++||.|++|+|+. .++| ||||+|++.++|++|++.+++.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~----~~rG----faFVeF~~~~~A~~Ai~~~~~~ 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS----KKPG----TAVVEFATVKAAELAVQNEVGL 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES----SSSS----EEEEEESCHHHHHHHHHTCCBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc----CCCC----EEEEEECCHHHHHHHHHhcCCC
Confidence 3467776554 5699999999999999999999983 1234 9999999999999999987664
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.05 E-value=1.2e-09 Score=85.30 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=61.0
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 026648 129 PDASSTLFVEGLPSDC----------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 129 pd~~~tLfVgNLP~~v----------teedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln 198 (235)
|-+++.|.+.|+=..- .++||++.|++||.|++|+|..+. ..| |+||+|.+.++|++|++.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G----~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQG----NVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTC----CEEEECSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcE----EEEEEECCHHHHHHHHHHhC
Confidence 3347889999983221 245789999999999999987654 234 99999999999999999999
Q ss_pred CceEeeeeeceEEEEe
Q 026648 199 GQSNIICLSNLVVFYQ 214 (235)
Q Consensus 199 G~~i~~~r~~~~~~~~ 214 (235)
|..+.. |...+-+++
T Consensus 77 G~~f~G-R~i~v~~~~ 91 (114)
T 3s6e_A 77 GRWFAG-KMITAAYVP 91 (114)
T ss_dssp TCEETT-EECEEEEEC
T ss_pred CCEECC-EEEEEEEEc
Confidence 998874 555555654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=9.1e-09 Score=77.82 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=57.0
Q ss_pred CeEEEcCCCC----CCCH----HHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 133 STLFVEGLPS----DCSR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 133 ~tLfVgNLP~----~vte----edL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.||+|.-+|. +.-. .+|.+.|++||.|..+|++.++ +||+|.+.+.|.+||+ |||+++..
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 5899988772 3334 5789999999999999999874 7999999999999999 99999887
Q ss_pred eeeceEEEE
Q 026648 205 CLSNLVVFY 213 (235)
Q Consensus 205 ~r~~~~~~~ 213 (235)
+...+.+..
T Consensus 76 r~LkV~lkt 84 (91)
T 2dnr_A 76 RTITIALKS 84 (91)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEeCC
Confidence 666555543
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=2.5e-08 Score=84.19 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=59.8
Q ss_pred CCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEEEEecc
Q 026648 142 SDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVVFYQIA 216 (235)
Q Consensus 142 ~~vteedL~~lF~~fG~I~~vrl~~dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~~~~~~ 216 (235)
.+-.+++|++.|++||.|.+|+|+.+. +....|.++|++||+|.+.++|++|++.|||..+.. |...+.+++.+
T Consensus 139 ~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g-r~i~~~~~~~~ 213 (222)
T 3dxb_A 139 DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG-RKVVAEVYDQE 213 (222)
T ss_dssp CTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS-SBCEEEECCHH
T ss_pred HHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC-eEEEEEEcCHH
Confidence 345678999999999999999998765 333334667799999999999999999999998774 66667777643
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=3.6e-08 Score=75.04 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=53.9
Q ss_pred CeEEEcCCCCC-----CCH----HHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEe
Q 026648 133 STLFVEGLPSD-----CSR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNI 203 (235)
Q Consensus 133 ~tLfVgNLP~~-----vte----edL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~ 203 (235)
.||+|.-++.+ .-. .+|.+.|++||.|..+|++.++ +||+|.+.+.|.+||+ |+|++|.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 59999998743 222 4688999999999999999985 7999999999999999 9999998
Q ss_pred eeeec
Q 026648 204 ICLSN 208 (235)
Q Consensus 204 ~~r~~ 208 (235)
.+...
T Consensus 84 Gr~L~ 88 (95)
T 1ufw_A 84 GRAVK 88 (95)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 65443
No 209
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.97 E-value=4.4e-05 Score=58.35 Aligned_cols=56 Identities=16% Similarity=0.397 Sum_probs=49.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 026648 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 131 ~~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln 198 (235)
....++| ++|.+....||.++|++||+| .|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 3466777 999999999999999999964 78888875 89999999999999999874
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.83 E-value=5.2e-05 Score=59.26 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=62.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC-----CCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPF-----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICL 206 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~f-----G~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r 206 (235)
.++|=+=|||..+++..|+.|.+++ |.|+++.|++|.+ =|+|+|.+...|.+|.-+|+|+++.. |
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---------GAivef~d~~~AgKasLaL~G~ef~g-r 90 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---------GAIIIFRDSKFAAKMLMILNGSQFQG-K 90 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---------EEEEECSCHHHHHHHHHHHSSEEETT-E
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---------ceEEEEccchhhHHHHhhcCCeeecC-e
Confidence 4789999999999999999999999 9999999999973 49999999999999999999999994 4
Q ss_pred eceEE
Q 026648 207 SNLVV 211 (235)
Q Consensus 207 ~~~~~ 211 (235)
.+.|.
T Consensus 91 ~Lr~g 95 (117)
T 2l9w_A 91 VIRSG 95 (117)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 44444
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.26 E-value=0.0014 Score=49.17 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=57.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCC-CceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGD-PLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~-~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
++|.|++||+..||+++.+.++....+.-...+..+... +. .-.-|+|.|.+.+++..-.+.++|+.+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~--~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL--YPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS--TTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC--CCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 589999999999999999999999988877877776111 11 11368999999999999999999997664
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.03 E-value=0.0009 Score=51.17 Aligned_cols=54 Identities=17% Similarity=0.402 Sum_probs=47.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln 198 (235)
..|+| ++|.+....||.++|++||+ ..|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999995 478888875 89999999999999999875
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.0031 Score=48.46 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=50.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC-----CCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHH----hcCceE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPF-----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA----LQGQSN 202 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~f-----G~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~----LnG~~i 202 (235)
.++|.|.|||.++.++.|+-.|+.- |.|.+|.... . -|+|+|.+.+.|++.++. |+|+.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~----------~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-C----------GGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-T----------EEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-C----------cEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 4799999999999999999999872 5677776654 1 689999999999999876 666555
Q ss_pred ee
Q 026648 203 II 204 (235)
Q Consensus 203 ~~ 204 (235)
.+
T Consensus 77 sV 78 (104)
T 2dhx_A 77 SL 78 (104)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.62 E-value=0.0025 Score=49.06 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=56.8
Q ss_pred CeEEEcCCCCCC-C----HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeee
Q 026648 133 STLFVEGLPSDC-S----RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLS 207 (235)
Q Consensus 133 ~tLfVgNLP~~v-t----eedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~ 207 (235)
++|+|.||+.++ + .+.++.||..|+++......+.-. =..|.|.++++|.+|...|+++.+...+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~- 75 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFLGKE- 75 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEETTEE-
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceecCce-
Confidence 699999999876 3 256789999999988876665542 2579999999999999999999988653
Q ss_pred ceEEEEe
Q 026648 208 NLVVFYQ 214 (235)
Q Consensus 208 ~~~~~~~ 214 (235)
.-|-|.|
T Consensus 76 ~r~YFgq 82 (104)
T 1wey_A 76 MKLYFAQ 82 (104)
T ss_dssp CEEECCC
T ss_pred eEEEecC
Confidence 3344555
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.57 E-value=0.0058 Score=48.01 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=54.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEeeeeeceEE
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNIICLSNLVV 211 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~~r~~~~~ 211 (235)
.+.|-|=+.|... -..|-+.|++||.|++...... . . +-.|.|.++.+|++||.. ||..|.....--|.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~--~---N----WihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT--G---N----WMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS--S---S----EEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC--C---C----eEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 5789999999996 5567788999999999886211 1 2 999999999999999977 99888743333344
Q ss_pred EE
Q 026648 212 FY 213 (235)
Q Consensus 212 ~~ 213 (235)
.+
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.18 E-value=0.011 Score=44.91 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=54.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCc-eEEEEEecCHHHHHHHHHHhcCceEeee
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPL-ILCFVDFVSPAHAATAMDALQGQSNIIC 205 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~-~faFVeF~s~~~A~~Ai~~LnG~~i~~~ 205 (235)
+-+|.|+.||+..||+++.+.+++.-.+.....+..+ .+.+.++ .-|+|.|.+.++...-.+.++|+.....
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~--~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAAD--LSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCC--SSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCc--cCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3589999999999999999999988765444444444 1111111 2489999999999999999999876653
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.17 E-value=0.0072 Score=57.38 Aligned_cols=55 Identities=11% Similarity=0.200 Sum_probs=41.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHH
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~ 195 (235)
.++|||. .|..+++.+|.+.|++||.|.++.+-.+++ .|+.|||.+.++++.+++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g--------~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG--------LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS--------EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC--------eEEEEEeCCHHHHHHHHh
Confidence 4789997 799999999999999999999998876652 399999999999886643
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.93 E-value=0.014 Score=45.81 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=27.2
Q ss_pred EEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 026648 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199 (235)
Q Consensus 161 ~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG 199 (235)
.++|+.+... ++|||||+|.+.++|++|++.+++
T Consensus 2 ~~kl~ln~~~-----~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGKT-----LKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECSS-----CEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCcc-----ccchhHHHHHHHHhHHHHHHhhcc
Confidence 4677777632 344999999999999999998875
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.96 E-value=0.16 Score=48.44 Aligned_cols=55 Identities=16% Similarity=0.405 Sum_probs=48.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 026648 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (235)
Q Consensus 132 ~~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~Ln 198 (235)
...|+|+ +|......+|.++|+.||. .+|+.+.+. .|||.|.+.+.|..+++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt----------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT----------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS----------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC----------eEEEEECCHHHHHHHHHHHH
Confidence 4678887 9999999999999999995 477777664 89999999999999999985
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.64 E-value=0.097 Score=41.72 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=53.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEee---------CC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVS---------KE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGQS 201 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~v-rl~~---------dk-~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~ 201 (235)
..|.|=+.|.+.+.. +-+.|++||.|.+- .+.. .+ .+-+.=....+-.|.|+++.+|.+|++. ||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 568888887777665 45679999999872 2111 00 1101000012889999999999999976 9999
Q ss_pred EeeeeeceEEEEec
Q 026648 202 NIICLSNLVVFYQI 215 (235)
Q Consensus 202 i~~~r~~~~~~~~~ 215 (235)
|..| ..-|+.|+.
T Consensus 86 i~G~-mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGV-LLGVIPYTK 98 (132)
T ss_dssp ETTE-ECEEEECCH
T ss_pred eCcE-EEEEEECCH
Confidence 8877 555777763
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=86.43 E-value=0.26 Score=38.24 Aligned_cols=28 Identities=11% Similarity=-0.110 Sum_probs=24.7
Q ss_pred ceEEEEEecCHHHHHHHHHHh-cCceEee
Q 026648 177 LILCFVDFVSPAHAATAMDAL-QGQSNII 204 (235)
Q Consensus 177 ~~faFVeF~s~~~A~~Ai~~L-nG~~i~~ 204 (235)
+|+++|+|.+.++|++|++.| ||..++.
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G 41 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG 41 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC
Confidence 359999999999999999999 8877765
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=71.48 E-value=0.82 Score=33.95 Aligned_cols=96 Identities=9% Similarity=0.111 Sum_probs=33.9
Q ss_pred CccCCCccccccCCcCCCcccCcccccchhhhhhcCC--CcCCCCCCCC-CcccCCCCCCCCCCCCccccCCCCCCCCCC
Q 026648 36 HELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGPSAK 112 (235)
Q Consensus 36 ~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~y~~~~~--~~s~~~g~~~-r~~gGg~~G~~~~~r~~~g~gg~~~~~~~~ 112 (235)
.+++.--+++-|. .|-.|.+.+++.+.- .+++ |+.|.+.+.+ .++. .|+|..+.++.+...-.....
T Consensus 15 ~~~te~~L~~~F~-~~G~v~~v~i~~d~~----~~kg~afV~f~~~~~A~~Ai~-~l~~~~~~g~~i~V~~a~~~~---- 84 (115)
T 4f25_A 15 KSIDNKALYDTFS-AFGNILSCKVVCDEN----GSKGYGFVHFETQEAAERAIE-KMNGMLLNDRKVFVGRFKSRK---- 84 (115)
T ss_dssp TTCCHHHHHHHHG-GGSCEEEEEEEEETT----EEEEEEEEEESCHHHHHHHHH-HHTTCEETTEECEEEESSCCC----
T ss_pred CCCCHHHHHHHHh-ccCCEEEEEEeecCC----CCCceEEEEECCHHHHHHHHH-HcCCCEECCEEEEEEECCCcc----
Confidence 3444444444443 255566666655321 1222 6777775444 5665 678888877765432111100
Q ss_pred CCcCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 026648 113 DRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRRE 148 (235)
Q Consensus 113 ~r~~g~~~~~p~~~~ppd~~~tLfVgNLP~~vteed 148 (235)
.+... ........++|||+|||+++|++.
T Consensus 85 ~~~~~-------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 85 EREAE-------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp C-----------------------------------
T ss_pred ccccc-------cccccCCCCceEeCCCCCCccccc
Confidence 00000 000111246899999999999874
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.09 E-value=20 Score=29.47 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=37.1
Q ss_pred eEEEcCCCCC---------CCHHHHHHhh--cCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHH
Q 026648 134 TLFVEGLPSD---------CSRREVAHIF--RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188 (235)
Q Consensus 134 tLfVgNLP~~---------vteedL~~lF--~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~ 188 (235)
+..|-|+|.. .+..+|++.| +.|..+ +|+.+..+.++++ ++.|+|.+-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~Gh~g-----~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLGHSG-----TAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSBEEE-----EEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCCCce-----eEEEEecCCh
Confidence 6788888872 3457899966 999875 5777777766664 9999999743
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=36.80 E-value=71 Score=20.63 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=46.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGQSNII 204 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s~~~A~~Ai~~LnG~~i~~ 204 (235)
.+|.|.++.-.-=...++..+.. .+|..+.+-... + -+.|+|.+.++..++|+. -||.+..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~-----~----~~~v~~~~~~~i~~~i~~-~Gy~~~~ 67 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE-----A----VVAGNKEDVDKYIKAVEA-AGYQAKL 67 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE-----E----EEEEEGGGHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC-----C----EEEEEECCHHHHHHHHHH-cCCceEe
Confidence 47899999888888889999988 899888876543 2 577888866677777776 4776543
No 225
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=30.45 E-value=6.9 Score=36.16 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=12.9
Q ss_pred HHHhhcCCCCeEEEE
Q 026648 149 VAHIFRPFVGYKEVR 163 (235)
Q Consensus 149 L~~lF~~fG~I~~vr 163 (235)
|..||.+++.|..|.
T Consensus 9 L~~lF~p~pPl~~~~ 23 (437)
T 3pgw_S 9 LLALFAPRDPIPYLP 23 (437)
T ss_pred HHHhcCCCCCCcCCC
Confidence 788999999998873
No 226
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=28.48 E-value=1.1e+02 Score=23.35 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=31.6
Q ss_pred CCCeEEEEEeeCCCCCCCCCCceEEEEE-ecCHHHHHHHHHHhc----------CceEeeee-eceEEEEecccc
Q 026648 156 FVGYKEVRLVSKESRHPGGDPLILCFVD-FVSPAHAATAMDALQ----------GQSNIICL-SNLVVFYQIACE 218 (235)
Q Consensus 156 fG~I~~vrl~~dk~~~~gG~~~~faFVe-F~s~~~A~~Ai~~Ln----------G~~i~~~r-~~~~~~~~~~~~ 218 (235)
+-.|.+|++-.|-.- .-.||. |-+.++.+.++++|+ |.++.... ..+.+++|...+
T Consensus 43 ~vtVt~V~vS~Dl~~-------AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lr~~PeL~F~~D~s~e 110 (129)
T 2e7g_A 43 NVELSKVSLTPDFSA-------CRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNA 110 (129)
T ss_dssp TCCEEEEEECTTSCC-------EEEEECCCSCHHHHHHHHHHHHHTHHHHHHHHHTCTTCSCCCCEEEEETTCCC
T ss_pred eeEEEEEEECCCCcE-------EEEEEEecCChhhHHHHHHHHHHhHHHHHHHHHhhcCCccCCeEEEEEcCCHH
Confidence 568999999888621 134665 545554444444444 33333222 467777885544
No 227
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=26.00 E-value=1.1e+02 Score=18.25 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=39.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEec---CHHHHHHHHHHhcCc
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFV---SPAHAATAMDALQGQ 200 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~---s~~~A~~Ai~~LnG~ 200 (235)
++.|.++.-..-...++..+....+|..+.+-... + -..|+|. +.+...++++.+ ||
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~-----~----~~~v~~~~~~~~~~i~~~i~~~-G~ 63 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK-----K----SVVVEFDAPATQDLIKEALLDA-GQ 63 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT-----T----EEEEEECTTCCHHHHHHHHHHH-TC
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC-----C----EEEEEECCCCCHHHHHHHHHHc-CC
Confidence 56677777666667888999999889888876543 2 6778886 345555666554 54
No 228
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=25.39 E-value=1.2e+02 Score=18.50 Aligned_cols=60 Identities=13% Similarity=0.308 Sum_probs=41.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecC----HHHHHHHHHHhcCceE
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS----PAHAATAMDALQGQSN 202 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s----~~~A~~Ai~~LnG~~i 202 (235)
.+|.|.++.-..-...++..+....+|.++.+-... + -+.|.|.. .+....+++.+ ||..
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~-----~----~~~v~~~~~~~~~~~i~~~i~~~-G~~~ 68 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN-----S----NGTVEYDPLLTSPETLRGAIEDM-GFDA 68 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT-----T----EEEEEECTTTCCHHHHHHHHHHH-TCEE
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC-----C----EEEEEECCCcCCHHHHHHHHHHC-CCCc
Confidence 357888887655566788888888888887766543 2 67888863 45556667665 6654
No 229
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=24.98 E-value=1.2e+02 Score=18.46 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecC----HHHHHHHHHHhcCceE
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS----PAHAATAMDALQGQSN 202 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s----~~~A~~Ai~~LnG~~i 202 (235)
.+|.|.++.-..-...++..+....+|..+.+-... + -+.|.|.. .+....+++.+ ||.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~-----~----~~~v~~~~~~~~~~~i~~~i~~~-G~~~ 70 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAE-----G----TVEVTIDSSVVTLKDIVAVIEDQ-GYDV 70 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT-----T----EEEEEEETTTSCHHHHHHHHHHT-TCEE
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecC-----C----EEEEEECCCCCCHHHHHHHHHHc-CCCC
Confidence 368888887766667788888888889888876543 3 67788863 44555666654 6643
No 230
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.43 E-value=41 Score=28.89 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=26.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEee
Q 026648 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVS 166 (235)
Q Consensus 133 ~tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~ 166 (235)
..+.|+|||++++..-|.+++.. ..+....++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46899999999999999999987 6666555443
No 231
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=20.82 E-value=1.5e+02 Score=17.77 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=42.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCceEEEEEecC----HHHHHHHHHHhcCceE
Q 026648 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS----PAHAATAMDALQGQSN 202 (235)
Q Consensus 134 tLfVgNLP~~vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~~faFVeF~s----~~~A~~Ai~~LnG~~i 202 (235)
++.|.++.-..-...++..+....+|..+.+-... + -..|+|.. .+...++++.+ ||.+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~-----~----~~~v~~~~~~~~~~~i~~~i~~~-G~~~ 65 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKK-----E----KAVVKFDEANVQATEICQAINEL-GYQA 65 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTT-----T----EEEEEECTTTCCHHHHHHHHHTT-SSCE
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecC-----C----EEEEEECCCCCCHHHHHHHHHHc-CCCc
Confidence 68888888777778899999999889888876543 2 67788863 44445555553 6643
No 232
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.27 E-value=21 Score=26.82 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=31.2
Q ss_pred CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCCc-eEEEEEecCHHHHHHHHHHhcC
Q 026648 144 CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPL-ILCFVDFVSPAHAATAMDALQG 199 (235)
Q Consensus 144 vteedL~~lF~~fG~I~~vrl~~dk~~~~gG~~~-~faFVeF~s~~~A~~Ai~~LnG 199 (235)
.++++|..+..+.+ +..+++.... +.|++- ..-+=.|.+.++|.+|++.|--
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~---rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETT---RNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 44566777766665 4456655543 112221 1123379999999999988753
Done!