Query 026650
Match_columns 235
No_of_seqs 161 out of 274
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 10:48:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 4.4E-28 9.6E-33 171.9 7.1 51 65-115 1-51 (51)
2 PLN03162 golden-2 like transcr 98.6 2.1E-08 4.6E-13 96.0 1.6 26 1-26 266-291 (526)
3 TIGR01557 myb_SHAQKYF myb-like 97.8 8E-06 1.7E-10 58.9 1.5 23 2-24 34-56 (57)
4 PF14379 Myb_CC_LHEQLE: MYB-CC 93.8 0.16 3.5E-06 36.6 4.9 35 80-115 6-40 (51)
5 PF15235 GRIN_C: G protein-reg 83.6 0.89 1.9E-05 38.7 2.5 19 87-105 71-89 (137)
6 PF01519 DUF16: Protein of unk 61.5 44 0.00096 27.3 7.0 25 88-112 68-92 (102)
7 cd07645 I-BAR_IMD_BAIAP2L1 Inv 51.0 1.5E+02 0.0033 27.4 9.3 70 65-137 63-141 (226)
8 cd07646 I-BAR_IMD_IRSp53 Inver 50.7 1.5E+02 0.0033 27.4 9.3 70 65-137 65-143 (232)
9 PF00435 Spectrin: Spectrin re 31.5 1.8E+02 0.0039 20.2 7.2 49 88-139 42-90 (105)
10 KOG2620 Prohibitins and stomat 28.3 2.9E+02 0.0062 26.5 7.6 50 64-113 155-210 (301)
11 KOG4466 Component of histone d 25.9 4.4E+02 0.0096 25.2 8.4 39 87-131 68-106 (291)
12 PF03816 LytR_cpsA_psr: Cell e 25.1 60 0.0013 26.6 2.3 18 94-111 131-148 (149)
13 PRK10803 tol-pal system protei 23.1 2.8E+02 0.006 25.2 6.4 42 73-114 54-95 (263)
14 PF08898 DUF1843: Domain of un 21.9 1.6E+02 0.0034 21.6 3.7 34 102-135 18-51 (53)
15 PF07889 DUF1664: Protein of u 21.8 4.8E+02 0.01 21.8 7.0 52 88-139 62-113 (126)
16 PF01815 Rop: Rop protein; In 21.8 81 0.0018 23.6 2.2 21 79-99 38-59 (60)
17 KOG0994 Extracellular matrix g 21.7 6.1E+02 0.013 29.4 9.5 73 68-141 1410-1483(1758)
18 PF00473 CRF: Corticotropin-re 21.5 2E+02 0.0043 19.8 3.9 23 74-106 17-39 (39)
19 PF09731 Mitofilin: Mitochondr 20.3 8.5E+02 0.018 24.1 10.1 37 70-106 329-365 (582)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.95 E-value=4.4e-28 Score=171.92 Aligned_cols=51 Identities=88% Similarity=1.125 Sum_probs=49.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 026650 65 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN 115 (235)
Q Consensus 65 ~~qI~EALrmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La 115 (235)
|++|+||||+||||||||||||||||+||+|||||||||++|||||+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999874
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=98.56 E-value=2.1e-08 Score=96.00 Aligned_cols=26 Identities=46% Similarity=0.676 Sum_probs=24.3
Q ss_pred CcccCCCCchHHHHHHHHhhhhhccc
Q 026650 1 MRTMGVKGLTLYHLKSHLQKYRLGKQ 26 (235)
Q Consensus 1 lrlMgV~GLTiyHvKSHLQKYRL~k~ 26 (235)
|++|+|+|||++||||||||||+.++
T Consensus 266 LelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 266 LELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred HHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 57999999999999999999999775
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.81 E-value=8e-06 Score=58.92 Aligned_cols=23 Identities=57% Similarity=0.699 Sum_probs=21.2
Q ss_pred cccCCCCchHHHHHHHHhhhhhc
Q 026650 2 RTMGVKGLTLYHLKSHLQKYRLG 24 (235)
Q Consensus 2 rlMgV~GLTiyHvKSHLQKYRL~ 24 (235)
.+|++.+||..||+|||||||+.
T Consensus 34 ~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 34 ELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred HHcCCCCCCHHHHHHHHHHHHcc
Confidence 57999999999999999999974
No 4
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=93.83 E-value=0.16 Score=36.62 Aligned_cols=35 Identities=43% Similarity=0.499 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 026650 80 RRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN 115 (235)
Q Consensus 80 rrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La 115 (235)
--|..|+||||+|.=.+|.| |-||.=+|..-+-|.
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl~ 40 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQ 40 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHH
Confidence 45788999999999999999 778777766655543
No 5
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=83.57 E-value=0.89 Score=38.66 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 026650 87 EVQRRLQLRIEAQGKYLQS 105 (235)
Q Consensus 87 EVQRhLQLRIEAQGKYLQs 105 (235)
-||+||+++||.|++....
T Consensus 71 AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 4899999999999988754
No 6
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=61.49 E-value=44 Score=27.30 Aligned_cols=25 Identities=40% Similarity=0.419 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 026650 88 VQRRLQLRIEAQGKYLQSILEKACK 112 (235)
Q Consensus 88 VQRhLQLRIEAQGKYLQsILEKAqe 112 (235)
.=+.||.+|.+||+-|++|++.-+.
T Consensus 68 qIkel~~e~k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 68 QIKELQVEQKAQGKTLQLILKTLQS 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3378999999999999999876544
No 7
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=50.98 E-value=1.5e+02 Score=27.35 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHH
Q 026650 65 GYQVTEALRVQMEVQRRLHEQLEV---------QRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELA 135 (235)
Q Consensus 65 ~~qI~EALrmQmEVQrrLHEQLEV---------QRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~ 135 (235)
+..|.++|.-=-||+|+++.|||. =..|.-.+|..-||+...+.+=+.. +-.-..+||-+.++|--+-
T Consensus 63 SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E---~k~k~dsLeK~~seLKK~R 139 (226)
T cd07645 63 SKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTE---HKNKLDSLEKSQADLKKIR 139 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 456788885545999999998873 3578999999999999988885443 4555678999999988887
Q ss_pred HH
Q 026650 136 IK 137 (235)
Q Consensus 136 s~ 137 (235)
-+
T Consensus 140 RK 141 (226)
T cd07645 140 RK 141 (226)
T ss_pred hc
Confidence 66
No 8
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=50.75 E-value=1.5e+02 Score=27.42 Aligned_cols=70 Identities=27% Similarity=0.392 Sum_probs=53.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHH
Q 026650 65 GYQVTEALRVQMEVQRRLHEQLEVQ---------RRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELA 135 (235)
Q Consensus 65 ~~qI~EALrmQmEVQrrLHEQLEVQ---------RhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~ 135 (235)
+..|..||.-=-||+|.++.+||++ ..|+-++|..-||+...+.+=+-. +-.-..++|-+++||-.|-
T Consensus 65 SkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e---~k~k~~sleK~qseLKKlR 141 (232)
T cd07646 65 SKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTE---HRSKGESLEKCQAELKKLR 141 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4567788855558888888887744 479999999999999877665443 4455678999999998877
Q ss_pred HH
Q 026650 136 IK 137 (235)
Q Consensus 136 s~ 137 (235)
-+
T Consensus 142 rK 143 (232)
T cd07646 142 KK 143 (232)
T ss_pred Hh
Confidence 55
No 9
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=31.52 E-value=1.8e+02 Score=20.24 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHHHHhh
Q 026650 88 VQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVS 139 (235)
Q Consensus 88 VQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~s~v~ 139 (235)
-.+.++--|.....-+..|.+.++.-.... +..-...+..+.+|.....
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~---~~~~~~i~~~~~~l~~~w~ 90 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLIDSG---PEDSDEIQEKLEELNQRWE 90 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HTTHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHH
Confidence 344555567777788888888888775543 3344555666666666543
No 10
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=28.28 E-value=2.9e+02 Score=26.55 Aligned_cols=50 Identities=24% Similarity=0.171 Sum_probs=38.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHhHHHHHHHHHHHHH
Q 026650 64 DGYQVTEALRVQMEVQRRLHEQL---EVQRRLQLRI---EAQGKYLQSILEKACKA 113 (235)
Q Consensus 64 ~~~qI~EALrmQmEVQrrLHEQL---EVQRhLQLRI---EAQGKYLQsILEKAqe~ 113 (235)
..-++.+|.+||-|.+|+=.-++ |--|.+|+.+ |++.|||-+.=.+++..
T Consensus 155 pp~~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~ 210 (301)
T KOG2620|consen 155 PPPSVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQ 210 (301)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHH
Confidence 34578999999999999765553 4678888887 78999998877766553
No 11
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.94 E-value=4.4e+02 Score=25.23 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHH
Q 026650 87 EVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREEL 131 (235)
Q Consensus 87 EVQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eL 131 (235)
++|+.+++||+--|.|.+-+++.++.-.- .-++||++++
T Consensus 68 ~L~~~~kerl~~aely~e~~~e~v~~eYe------~E~~aAk~e~ 106 (291)
T KOG4466|consen 68 KLDESRKERLRVAELYREYCVERVEREYE------CEIKAAKKEY 106 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 38999999999999999999988766533 2345555543
No 12
>PF03816 LytR_cpsA_psr: Cell envelope-related transcriptional attenuator domain; InterPro: IPR004474 This entry describes a domain of unknown function that is found in the predicted extracellular domain of a number of putative membrane-bound proteins. One of these is protein psr, described as a penicillin binding protein 5 (PDP-5) synthesis repressor. Another is Bacillus subtilis LytR, described as a transcriptional attenuator of itself and the LytABC operon, where LytC is N-acetylmuramoyl-L-alanine amidase. A third is CpsA, a putative regulatory protein involved in exocellular polysaccharide biosynthesis. These proteins share the property of having a short putative N-terminal cytoplasmic domain and transmembrane domain forming a signal-anchor.; PDB: 3PE5_B 3QFI_A 3NRO_B 3OKZ_B 3OWQ_C 3MEJ_A 4DE9_A 3TEP_A 3TEL_A 3TFL_A ....
Probab=25.10 E-value=60 Score=26.63 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 026650 94 LRIEAQGKYLQSILEKAC 111 (235)
Q Consensus 94 LRIEAQGKYLQsILEKAq 111 (235)
-||+.|-+||.++++|+.
T Consensus 131 ~R~~rQ~~~l~al~~k~~ 148 (149)
T PF03816_consen 131 GRIQRQQEVLKALLEKLK 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 389999999999999974
No 13
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.08 E-value=2.8e+02 Score=25.19 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 026650 73 RVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 114 (235)
Q Consensus 73 rmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~L 114 (235)
++|+|+|.+|...=.==+.|.=.||.+..-|+.|.+++.+--
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456778888765322235577789999999999999887754
No 14
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=21.85 E-value=1.6e+02 Score=21.61 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHH
Q 026650 102 YLQSILEKACKALNDQAIVAAGLEAAREELSELA 135 (235)
Q Consensus 102 YLQsILEKAqe~La~~~~~~~glEaak~eLseL~ 135 (235)
.+++++-.|.+.|+.+..-.+.++..++|...|.
T Consensus 18 ~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 18 QMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLE 51 (53)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHh
Confidence 3677888999999988888888899999887764
No 15
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.81 E-value=4.8e+02 Score=21.82 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHHHHhh
Q 026650 88 VQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVS 139 (235)
Q Consensus 88 VQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~s~v~ 139 (235)
..|||.-||+.=++-|....|-++.+-.+=+..-..++..+.++..+...|.
T Consensus 62 tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 62 TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6789999999999999887777665544433334444444444444444433
No 16
>PF01815 Rop: Rop protein; InterPro: IPR000769 The Rop protein regulates plasmid DNA replication by modulating the initiation of transcription of the primer RNA precursor. Processing of the precursor, RNAII, is inhibited by hydrogen bonding of RNAII to its complementary sequence in RNAI. Rop increases the affinity of RNAI for RNAII and thus decreases the rate of replication initiation events. The 3D structure of Rop has been determined by X-ray crystallography and refined to 1.7A resolution. The 63 amino acid protein is a homodimer, each monomer consisting almost entirely of two alpha-helices, the whole molecule forming a highly regular four-alpha-helix bundle []. This can be approximated by a four-stranded rope, with radius 7.0 A, a left-handed helical twist, and pitch 172.5 A. A very compact packing of side chains in the helix interfaces of the Rop coiled-coil structure is presumed to account for its high stability []. The overall details of the structure have been confirmed by proton NMR [, ].; PDB: 1GTO_C 2IJH_A 2IJJ_B 1GMG_A 1ROP_A 1NKD_A 1QX8_A 1F4M_D 2GHY_B 3K79_A ....
Probab=21.78 E-value=81 Score=23.63 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=16.2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHH
Q 026650 79 QRRLHEQLE-VQRRLQLRIEAQ 99 (235)
Q Consensus 79 QrrLHEQLE-VQRhLQLRIEAQ 99 (235)
=-||||+-| +.++|..|++..
T Consensus 38 CE~LHe~AE~L~~~l~~r~~~e 59 (60)
T PF01815_consen 38 CERLHELAEQLYRSLSARLGEE 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 358999977 789999998764
No 17
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.69 E-value=6.1e+02 Score=29.39 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHHHHhhcC
Q 026650 68 VTEALRVQMEVQRRLHEQ-LEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSND 141 (235)
Q Consensus 68 I~EALrmQmEVQrrLHEQ-LEVQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~s~v~~~ 141 (235)
-.+||.+=++++.+|.+- -|+++-|++=-||-- ---..-++|++++..-+.+..-.+.+.++|..|...|.++
T Consensus 1410 A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~-~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~F 1483 (1758)
T KOG0994|consen 1410 AGGALLMAGDADTQLRSKLAEAEQTLSMVREAKL-SASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDF 1483 (1758)
T ss_pred cchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888777777664 357777766544431 1123456777777766666677889999999999988874
No 18
>PF00473 CRF: Corticotropin-releasing factor family; InterPro: IPR000187 Corticotropin-releasing factor (CRF), urotensin-I, urocortin and sauvagine form a family of related neuropeptides in vertebrates. The family can be grouped into 2 separate paralogous lineages, with urotensin-I, urocortin and sauvagine in one group and CRF forming the other group. Urocortin and sauvagine appear to represent orthologues of fish urotensin-I in mammals and amphibians, respectively. The peptides have a variety of physiological effects on stress and anxiety, vasoregulation, thermoregulation, growth and metabolism, metamorphosis and reproduction in various species, and are all released as preprohormones []. CRF [] is a hormone found mainly in the paraventricular nucleus of the mammalian hypothalamus that regulates the release of corticotropin (ACTH) from the pituitary gland. From here, CRF is transported to the anterior pituitary, stimulating adrenocorticotropic hormone (ACTH) release via CRF type 1 receptors, thereby activating the hypothalamo-pituitary-adrenocortical axis (HPA) and thus glucocorticoid release. CRF is evolutionary related to a number of other active peptides. Urocortin acts in vitro to stimulate the secretion of adrenocorticotropic hormone. Urotensin is found in the teleost caudal neurosecretory system and may play a role in osmoregulation and as a corticotropin-releasing factor. Urotensin-I is released from the urophysis of fish, and produces ACTH and subsequent cortisol release in vivo. The nonhormonal portion of the prohormone is thought to be the urotensin binding protein (urophysin). Sauvagine (P01144 from SWISSPROT), isolated from frog skin, has a potent hypotensive and diuretic effect.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3EHU_C 3EHT_B 2RMF_A 3N96_G.
Probab=21.55 E-value=2e+02 Score=19.78 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026650 74 VQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSI 106 (235)
Q Consensus 74 mQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsI 106 (235)
+.+|.-+|..+|.+ +..+||+.|
T Consensus 17 l~~~~a~~~~~q~~----------~NR~~L~~i 39 (39)
T PF00473_consen 17 LELERAERQMKQAQ----------ANRKFLDSI 39 (39)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHH-
T ss_pred HHHHHHHHHHHHHH----------HHHHHHhcC
Confidence 45556555555444 666666654
No 19
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=20.25 E-value=8.5e+02 Score=24.10 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026650 70 EALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSI 106 (235)
Q Consensus 70 EALrmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsI 106 (235)
+-|+.|++.|...|++=-.+--...+||-+.+|.+.|
T Consensus 329 ~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i 365 (582)
T PF09731_consen 329 EELRQELKRQEEAHEEHLKNELREQAIELQREFEKEI 365 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554444333333445666666666554
Done!