Query 026650
Match_columns 235
No_of_seqs 161 out of 274
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.0 8E-11 2.7E-15 86.1 1.0 25 1-25 36-60 (64)
2 2ba2_A D12_ORF131, hypothetica 79.1 5.8 0.0002 30.4 6.4 43 67-112 33-75 (85)
3 3uun_A Dystrophin; triple heli 71.1 21 0.00073 25.3 7.7 57 83-139 39-95 (119)
4 2kes_A Synphilin-1; synphillin 66.6 5.8 0.0002 27.2 3.4 24 77-100 15-42 (48)
5 3uul_A Utrophin; spectrin repe 65.9 22 0.00076 25.4 6.8 57 84-140 40-96 (118)
6 3ok8_A Brain-specific angiogen 59.1 56 0.0019 28.5 9.2 69 65-136 70-147 (222)
7 4fla_A Regulation of nuclear P 43.5 1.3E+02 0.0045 24.4 9.7 70 66-135 75-144 (152)
8 1nkd_A ROP; atomic resolution 32.1 25 0.00084 25.6 2.2 26 75-100 36-62 (65)
9 3kdq_A Uncharacterized conserv 26.0 75 0.0026 26.0 4.4 61 65-140 3-66 (154)
10 2ykt_A Brain-specific angiogen 24.5 3.4E+02 0.012 23.4 9.5 69 65-136 72-149 (253)
11 1m1j_B Fibrinogen beta chain; 24.4 4.5E+02 0.015 25.1 10.0 33 77-109 132-164 (464)
12 3tul_A Cell invasion protein S 22.3 1.2E+02 0.004 25.5 4.8 62 70-144 30-98 (158)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=98.98 E-value=8e-11 Score=86.08 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.8
Q ss_pred CcccCCCCchHHHHHHHHhhhhhcc
Q 026650 1 MRTMGVKGLTLYHLKSHLQKYRLGK 25 (235)
Q Consensus 1 lrlMgV~GLTiyHvKSHLQKYRL~k 25 (235)
|++|||+|||++||||||||||+..
T Consensus 36 l~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 36 LDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999854
No 2
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=79.07 E-value=5.8 Score=30.37 Aligned_cols=43 Identities=40% Similarity=0.385 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026650 67 QVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 112 (235)
Q Consensus 67 qI~EALrmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe 112 (235)
.|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--+.
T Consensus 33 kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 33 VVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777765444445555 88999999999999999875443
No 3
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=71.15 E-value=21 Score=25.33 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHHHHhh
Q 026650 83 HEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVS 139 (235)
Q Consensus 83 HEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~s~v~ 139 (235)
..||+-.+.|+--|+++..-+.+|.+.+++-+.....++.....-+..+.+|...-.
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~ 95 (119)
T 3uun_A 39 KDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWE 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344445566677888899999999999998887544433333344566666665433
No 4
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=66.64 E-value=5.8 Score=27.21 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=18.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHh
Q 026650 77 EVQRRLHEQ----LEVQRRLQLRIEAQG 100 (235)
Q Consensus 77 EVQrrLHEQ----LEVQRhLQLRIEAQG 100 (235)
.+=|.|+|| +-+|.+||.-+|+|-
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 556788888 558999998888873
No 5
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=65.86 E-value=22 Score=25.39 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 026650 84 EQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSN 140 (235)
Q Consensus 84 EQLEVQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~s~v~~ 140 (235)
+||+-.+.|+--|+++..-+..|.+.+++-+.....++.....-+..|.+|...-..
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~ 96 (118)
T 3uul_A 40 EQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEA 96 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH
Confidence 334445566678889999999999999988865444333334456677777665443
No 6
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=59.14 E-value=56 Score=28.47 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=50.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHH
Q 026650 65 GYQVTEALRVQMEVQRRLHEQLEV---------QRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELA 135 (235)
Q Consensus 65 ~~qI~EALrmQmEVQrrLHEQLEV---------QRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~ 135 (235)
+..|.+||.-=-|++|+|..+||. =.+|+.+||...||++....+=+.. +...+.++|.+.+||-.+.
T Consensus 70 skeLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e---~k~~~~~leK~~~elkK~~ 146 (222)
T 3ok8_A 70 SQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIE---YRHRAANLEKCMSELWRME 146 (222)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHhh
Confidence 356888885555899999999884 3689999999999998775544433 3344456788888876665
Q ss_pred H
Q 026650 136 I 136 (235)
Q Consensus 136 s 136 (235)
.
T Consensus 147 r 147 (222)
T 3ok8_A 147 R 147 (222)
T ss_dssp H
T ss_pred h
Confidence 3
No 7
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=43.49 E-value=1.3e+02 Score=24.41 Aligned_cols=70 Identities=24% Similarity=0.233 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHH
Q 026650 66 YQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELA 135 (235)
Q Consensus 66 ~qI~EALrmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~ 135 (235)
..|.||..+--|-..||-.+++=.+.|.--+++=..|.+..|.++.+.+..+..-..-+...|.+|-...
T Consensus 75 ~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 75 KTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888899999999999999999999999999999999999999888766566666666655543
No 8
>1nkd_A ROP; atomic resolution structure alpha-helix bundle, transcription regulation; 1.09A {Escherichia coli} SCOP: a.30.1.1 PDB: 1rpo_A 1rop_A 1rpr_A 2ghy_A 1b6q_A 1gmg_A 2ijk_A 1gto_A 2ijj_A 2ijh_A 2iji_A 3k79_A 1qx8_A 1f4n_A 1f4m_A
Probab=32.14 E-value=25 Score=25.64 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 026650 75 QMEVQRRLHEQLE-VQRRLQLRIEAQG 100 (235)
Q Consensus 75 QmEVQrrLHEQLE-VQRhLQLRIEAQG 100 (235)
+-..=-||||+-| ++|+|+-|+++.+
T Consensus 36 ~A~~CE~LHe~AE~L~~~l~~r~~~~~ 62 (65)
T 1nkd_A 36 QADICESLHDHADELYRSCLARFGDDG 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444568999976 8999999998754
No 9
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=25.97 E-value=75 Score=25.96 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=38.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--hhh-hhhhhhchHHHHHHHHHHHHHhhc
Q 026650 65 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKA--LND-QAIVAAGLEAAREELSELAIKVSN 140 (235)
Q Consensus 65 ~~qI~EALrmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~--La~-~~~~~~glEaak~eLseL~s~v~~ 140 (235)
+|.++|||..--..|||++ +|+-||..--++ ||- -+. -+.--.-++..-.+|..|..+++.
T Consensus 3 ~MKLAEAL~lRadl~kri~-------qL~~ri~~n~~v--------QEGe~P~edp~~Ll~El~~~~~~L~~Li~~IN~ 66 (154)
T 3kdq_A 3 AMYLAEALAQRVEAQRRYS-------ELNQLLLDVAKV--------QEGDQPAENPHEILTELEELTTRINDLVRRINR 66 (154)
T ss_dssp CCBHHHHHHHHHHHHHHHH-------HHHHHHHHTTEE--------ETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH-------HHHHHHHhcCee--------cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999994 466677655311 110 000 000012355667788888888774
No 10
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=24.54 E-value=3.4e+02 Score=23.42 Aligned_cols=69 Identities=25% Similarity=0.366 Sum_probs=43.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHH
Q 026650 65 GYQVTEALRVQMEVQRRLHEQLEV---------QRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELA 135 (235)
Q Consensus 65 ~~qI~EALrmQmEVQrrLHEQLEV---------QRhLQLRIEAQGKYLQsILEKAqe~La~~~~~~~glEaak~eLseL~ 135 (235)
+..|.++|.-=-+++|.|..+++. =-.|+-+||+--||+.....+-.+... .....++-+.+++--+.
T Consensus 72 s~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie~d~K~v~~~~K~~~~e~k---~~~~~l~K~~~e~~kl~ 148 (253)
T 2ykt_A 72 SKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQR---SKGDALDKCQAELKKLR 148 (253)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HhHhHHHHHHHHHHHHH
Confidence 357889985555888888888881 125899999999999877554333322 12233444444444444
Q ss_pred H
Q 026650 136 I 136 (235)
Q Consensus 136 s 136 (235)
.
T Consensus 149 K 149 (253)
T 2ykt_A 149 K 149 (253)
T ss_dssp H
T ss_pred h
Confidence 3
No 11
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.39 E-value=4.5e+02 Score=25.05 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026650 77 EVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 109 (235)
Q Consensus 77 EVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEK 109 (235)
+-|+++.+..++=......||.|-+|++.+++.
T Consensus 132 ~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~ 164 (464)
T 1m1j_B 132 KTQKQRKDNDIILSEYNTEMELHYNYIKDNLDN 164 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666777778888888776654
No 12
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=22.33 E-value=1.2e+02 Score=25.47 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-------hhhhhchHHHHHHHHHHHHHhhcCC
Q 026650 70 EALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQ-------AIVAAGLEAAREELSELAIKVSNDC 142 (235)
Q Consensus 70 EALrmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La~~-------~~~~~glEaak~eLseL~s~v~~~c 142 (235)
++.+.+||.|..-||||- .=.++-|+.||++-..+ +++-.-+..+...|.++..+++.--
T Consensus 30 a~~~am~~sqqq~~eqlS-------------~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~ 96 (158)
T 3tul_A 30 AVWQAMIESQKEMGIQVS-------------KEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLD 96 (158)
T ss_dssp HHHHHHHHHHHHHTC--C-------------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 677888999999888862 11225666666554433 3333444444445555555555433
Q ss_pred CC
Q 026650 143 QG 144 (235)
Q Consensus 143 ~~ 144 (235)
|+
T Consensus 97 P~ 98 (158)
T 3tul_A 97 PA 98 (158)
T ss_dssp --
T ss_pred CC
Confidence 33
Done!