BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026651
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 123 KTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSG---HFARTVKAMKKQ 179
+T N P E K ASWGVDY+ D+ D G + R AMK
Sbjct: 99 QTCSNKMPGSLDHEEQDVKTFASWGVDYL-----KYDNCNDAGRSVMERYTRMSNAMKTY 153
Query: 180 KPDIMV 185
+I
Sbjct: 154 GKNIFF 159
>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8
pdb|2NTY|B Chain B, Rop4-Gdp-Prone8
pdb|2WBL|A Chain A, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|B Chain B, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 365
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 27/132 (20%)
Query: 90 IGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVD 149
+GE +GGG G+++A + L +T P P D A W +
Sbjct: 23 LGEDMSGGGKGVSSA-LALSNAITNLAASIFGEQTKLQPMPQDRQ---------ARWKKE 72
Query: 150 YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-------LRAVETL 202
L SV + H V + + K + E + + RGD LR ++ +
Sbjct: 73 IDWLLSV---------TDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAM 123
Query: 203 VHSGLDVF-AHN 213
+ LD F HN
Sbjct: 124 LIDTLDNFRGHN 135
>pdb|2L5H|A Chain A, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2L5H|B Chain B, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 191 DFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRD 226
+ GD RA L+ GLD F+ + ++ R+++I+R+
Sbjct: 504 ELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRN 539
>pdb|2KX9|A Chain A, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2KX9|B Chain B, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2XDF|A Chain A, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2XDF|B Chain B, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 191 DFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRD 226
+ GD RA L+ GLD F+ + ++ R+++I+R+
Sbjct: 504 ELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRN 539
>pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
From P.aeruginosa
Length = 463
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 64 QRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVK 123
+ F+++++ ++ K V + +C NG IA I LG C+ +C V
Sbjct: 158 RYFKQIRDDIAXAKPXKV--------VVDCGNGVAGVIAPQLIEALG--CSVIPLYCEVD 207
Query: 124 TSRNPAPPDPMEPENTAKAIA 144
+ PDP +PEN IA
Sbjct: 208 GNFPNHHPDPGKPENLKDLIA 228
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 92 ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA 144
+C NG IA I LG C+ +C V + PDP +PEN IA
Sbjct: 178 DCGNGVAGVIAPQLIEALG--CSVIPLYCEVDGNFPNHHPDPGKPENLKDLIA 228
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 92 ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA 144
+C NG IA I LG C+ +C V + PDP +PEN IA
Sbjct: 177 DCGNGVAGVIAPQLIEALG--CSVIPLYCEVDGNFPNHHPDPGKPENLKDLIA 227
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 92 ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA 144
+C NG IA I LG C+ +C V + PDP +PEN IA
Sbjct: 178 DCGNGVAGVIAPQLIEALG--CSVIPLYCEVDGNFPNHHPDPGKPENLKDLIA 228
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 92 ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA 144
+C NG IA I LG C+ +C V + PDP +PEN IA
Sbjct: 177 DCGNGVAGVIAPQLIEALG--CSVIPLYCEVDGNFPNHHPDPGKPENLKDLIA 227
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 92 ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA 144
+C NG IA I LG C+ +C V + PDP +PEN IA
Sbjct: 178 DCGNGVAGVIAPQLIEALG--CSVIPLYCEVDGNFPNHHPDPGKPENLKDLIA 228
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 92 ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA 144
+C NG IA I LG C+ +C V + PDP +PEN IA
Sbjct: 178 DCGNGVAGVIAPQLIEALG--CSVIPLYCEVDGNFPNHHPDPGKPENLKDLIA 228
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 92 ECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA 144
+C NG IA I LG C+ +C V + PDP +PEN IA
Sbjct: 178 DCGNGVAGVIAPQLIEALG--CSVIPLYCEVDGNFPNHHPDPGKPENLKDLIA 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,225,774
Number of Sequences: 62578
Number of extensions: 289785
Number of successful extensions: 744
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 22
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)