Query 026651
Match_columns 235
No_of_seqs 222 out of 1135
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 10:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00413 lipoate synthase; Pro 100.0 5E-71 1.1E-75 517.8 16.8 204 30-235 73-281 (398)
2 COG0320 LipA Lipoate synthase 100.0 5E-71 1.1E-75 498.7 14.2 182 47-235 19-200 (306)
3 KOG2672 Lipoate synthase [Coen 100.0 1.3E-69 2.7E-74 491.4 13.1 187 49-235 57-243 (360)
4 PLN02428 lipoic acid synthase 100.0 3.8E-59 8.3E-64 433.8 16.3 188 47-234 46-233 (349)
5 TIGR00510 lipA lipoate synthas 100.0 1.8E-54 3.9E-59 395.5 15.9 187 42-234 7-193 (302)
6 PRK12928 lipoyl synthase; Prov 100.0 1.5E-47 3.2E-52 347.5 16.9 187 41-234 3-190 (290)
7 PRK05481 lipoyl synthase; Prov 100.0 1.9E-34 4.2E-39 261.0 17.7 178 50-234 5-182 (289)
8 COG0502 BioB Biotin synthase a 100.0 3.2E-32 7E-37 252.4 11.1 159 64-235 14-182 (335)
9 PRK08508 biotin synthase; Prov 99.9 1.2E-24 2.6E-29 195.6 12.5 127 103-234 4-139 (279)
10 PLN02389 biotin synthase 99.9 4.5E-24 9.9E-29 200.5 12.8 160 64-234 47-215 (379)
11 KOG2900 Biotin synthase [Coenz 99.9 2.1E-24 4.5E-29 195.7 8.6 155 67-235 51-217 (380)
12 PRK15108 biotin synthase; Prov 99.9 1.6E-23 3.4E-28 194.0 13.1 155 66-234 9-173 (345)
13 PRK09240 thiH thiamine biosynt 99.9 5.8E-22 1.2E-26 184.9 11.1 157 66-234 38-204 (371)
14 PRK06256 biotin synthase; Vali 99.9 2.4E-21 5.1E-26 176.3 11.7 159 64-234 20-189 (336)
15 PRK05927 hypothetical protein; 99.9 1.4E-21 2.9E-26 182.0 9.5 160 61-231 4-182 (350)
16 TIGR02351 thiH thiazole biosyn 99.8 4.8E-21 1E-25 178.2 11.3 158 65-234 36-203 (366)
17 PRK08444 hypothetical protein; 99.8 4.1E-20 8.9E-25 172.4 11.9 154 65-233 14-189 (353)
18 TIGR03700 mena_SCO4494 putativ 99.8 4.2E-20 9.2E-25 170.7 11.9 157 65-232 12-187 (351)
19 PRK08445 hypothetical protein; 99.8 2.7E-19 5.9E-24 166.1 11.0 158 66-233 6-186 (348)
20 PRK09613 thiH thiamine biosynt 99.8 5.7E-18 1.2E-22 163.5 12.2 163 63-234 45-221 (469)
21 PRK07360 FO synthase subunit 2 99.8 5.1E-18 1.1E-22 158.3 11.1 155 65-232 21-204 (371)
22 PRK05926 hypothetical protein; 99.7 6.3E-18 1.4E-22 158.6 10.7 155 65-231 29-209 (370)
23 TIGR03699 mena_SCO4550 menaqui 99.7 2.6E-17 5.6E-22 150.5 9.0 156 66-232 5-184 (340)
24 TIGR03551 F420_cofH 7,8-dideme 99.7 1.1E-16 2.4E-21 147.3 12.4 155 66-234 3-181 (343)
25 PRK09234 fbiC FO synthase; Rev 99.7 1.9E-16 4.1E-21 161.9 9.9 157 66-229 29-209 (843)
26 TIGR00433 bioB biotin syntheta 99.6 1.4E-15 3E-20 135.3 11.4 148 77-234 5-160 (296)
27 PRK09234 fbiC FO synthase; Rev 99.6 1.7E-15 3.6E-20 155.0 12.0 146 65-223 488-652 (843)
28 PRK07094 biotin synthase; Prov 99.6 4.1E-15 8.9E-20 134.6 12.6 155 67-234 4-167 (323)
29 TIGR03550 F420_cofG 7,8-dideme 99.6 1.7E-15 3.6E-20 138.7 9.6 117 108-229 9-142 (322)
30 TIGR00423 radical SAM domain p 99.6 4E-15 8.7E-20 135.1 10.0 117 106-225 8-138 (309)
31 PRK06267 hypothetical protein; 99.6 1.6E-15 3.5E-20 140.7 6.9 142 75-234 3-155 (350)
32 PRK06245 cofG FO synthase subu 99.3 1.6E-11 3.6E-16 112.3 10.5 125 107-233 16-154 (336)
33 smart00729 Elp3 Elongator prot 98.9 1.1E-08 2.3E-13 83.1 9.4 124 106-233 4-137 (216)
34 cd01335 Radical_SAM Radical SA 98.8 9.4E-08 2E-12 76.2 11.2 108 109-221 3-113 (204)
35 COG1060 ThiH Thiamine biosynth 98.7 1.4E-07 3E-12 89.4 10.3 135 66-210 23-175 (370)
36 PLN02951 Molybderin biosynthes 98.4 1.6E-06 3.6E-11 81.6 10.9 141 81-231 37-184 (373)
37 PF04055 Radical_SAM: Radical 98.4 2.5E-07 5.3E-12 72.3 4.5 119 109-233 3-128 (166)
38 TIGR02666 moaA molybdenum cofa 98.4 4.5E-06 9.9E-11 76.3 11.5 117 110-233 17-140 (334)
39 PRK00164 moaA molybdenum cofac 98.3 6.1E-06 1.3E-10 75.2 12.0 121 106-233 20-145 (331)
40 TIGR02668 moaA_archaeal probab 98.2 1.1E-05 2.5E-10 72.4 10.6 119 106-233 13-135 (302)
41 PRK13361 molybdenum cofactor b 98.2 8.7E-06 1.9E-10 74.8 9.6 117 109-233 20-141 (329)
42 COG2108 Uncharacterized conser 97.9 2.9E-05 6.3E-10 73.1 6.8 104 104-214 29-142 (353)
43 PRK05301 pyrroloquinoline quin 97.9 0.00017 3.6E-09 67.1 11.8 124 103-233 16-142 (378)
44 PRK08207 coproporphyrinogen II 97.9 8.1E-05 1.8E-09 72.8 10.0 119 111-233 171-306 (488)
45 PRK08599 coproporphyrinogen II 97.7 9.2E-05 2E-09 69.0 7.3 117 113-233 11-137 (377)
46 PRK14329 (dimethylallyl)adenos 97.7 0.00044 9.5E-09 67.0 12.2 115 103-218 168-294 (467)
47 TIGR02109 PQQ_syn_pqqE coenzym 97.7 0.00042 9.2E-09 63.8 11.2 120 106-232 10-132 (358)
48 TIGR02026 BchE magnesium-proto 97.7 0.00049 1.1E-08 67.0 11.5 122 107-233 197-324 (497)
49 TIGR01579 MiaB-like-C MiaB-lik 97.6 0.00051 1.1E-08 64.9 11.2 118 105-225 140-267 (414)
50 PRK14332 (dimethylallyl)adenos 97.6 0.0007 1.5E-08 65.4 12.0 113 103-217 154-271 (449)
51 TIGR02495 NrdG2 anaerobic ribo 97.6 0.0013 2.7E-08 55.1 11.5 116 100-225 13-132 (191)
52 TIGR03471 HpnJ hopanoid biosyn 97.6 0.00074 1.6E-08 64.9 11.4 115 109-231 202-322 (472)
53 TIGR01290 nifB nitrogenase cof 97.6 0.0011 2.3E-08 64.3 12.3 130 91-225 12-157 (442)
54 TIGR00089 RNA modification enz 97.5 0.00071 1.5E-08 64.3 10.8 112 103-217 139-259 (429)
55 PRK05660 HemN family oxidoredu 97.5 0.00048 1E-08 64.8 8.8 118 112-233 15-144 (378)
56 TIGR00539 hemN_rel putative ox 97.5 0.00038 8.3E-09 64.7 8.0 118 112-233 9-137 (360)
57 PRK14340 (dimethylallyl)adenos 97.5 0.0012 2.6E-08 63.7 11.5 114 103-217 149-268 (445)
58 PRK14328 (dimethylallyl)adenos 97.5 0.0012 2.6E-08 63.2 11.1 112 103-217 147-267 (439)
59 PRK05799 coproporphyrinogen II 97.5 0.00042 9.1E-09 64.5 7.8 118 112-233 12-136 (374)
60 PRK14338 (dimethylallyl)adenos 97.4 0.0015 3.3E-08 63.1 11.8 126 103-232 155-290 (459)
61 PRK14336 (dimethylallyl)adenos 97.4 0.002 4.3E-08 61.6 11.2 113 103-217 124-244 (418)
62 COG2896 MoaA Molybdenum cofact 97.3 0.00089 1.9E-08 62.9 8.4 112 107-225 15-131 (322)
63 TIGR01125 MiaB-like tRNA modif 97.3 0.0016 3.4E-08 62.1 10.3 120 103-225 135-264 (430)
64 TIGR01574 miaB-methiolase tRNA 97.3 0.0027 5.9E-08 60.8 11.6 121 103-225 145-276 (438)
65 PRK14339 (dimethylallyl)adenos 97.2 0.0034 7.4E-08 60.0 11.4 121 103-225 127-259 (420)
66 PRK14331 (dimethylallyl)adenos 97.2 0.0031 6.7E-08 60.4 10.9 111 103-217 146-265 (437)
67 PRK14327 (dimethylallyl)adenos 97.2 0.0033 7E-08 62.1 11.3 121 103-225 212-341 (509)
68 TIGR01578 MiaB-like-B MiaB-lik 97.2 0.0038 8.2E-08 59.6 11.4 115 103-218 133-254 (420)
69 PRK14862 rimO ribosomal protei 97.2 0.0028 6.1E-08 60.9 10.3 127 103-231 139-280 (440)
70 PRK14325 (dimethylallyl)adenos 97.1 0.0063 1.4E-07 58.2 12.1 112 103-217 147-269 (444)
71 TIGR00238 KamA family protein. 97.1 0.0042 9E-08 57.9 10.4 119 87-216 104-235 (331)
72 TIGR03821 AblA_like_1 lysine-2 97.1 0.0026 5.5E-08 59.1 8.4 114 88-210 88-207 (321)
73 PRK14326 (dimethylallyl)adenos 97.0 0.0068 1.5E-07 59.5 11.3 112 103-217 157-277 (502)
74 PRK14330 (dimethylallyl)adenos 96.9 0.011 2.4E-07 56.5 11.7 108 106-217 143-260 (434)
75 COG2100 Predicted Fe-S oxidore 96.9 0.0045 9.7E-08 59.0 8.4 104 110-217 114-225 (414)
76 PRK14335 (dimethylallyl)adenos 96.9 0.012 2.7E-07 56.8 11.6 122 103-224 152-286 (455)
77 PF13353 Fer4_12: 4Fe-4S singl 96.9 0.0015 3.3E-08 51.5 4.5 88 110-201 12-102 (139)
78 PRK14337 (dimethylallyl)adenos 96.9 0.013 2.9E-07 56.3 11.7 110 105-217 150-269 (446)
79 PRK14333 (dimethylallyl)adenos 96.8 0.0081 1.8E-07 57.8 9.5 113 105-218 150-276 (448)
80 PRK08446 coproporphyrinogen II 96.8 0.0071 1.5E-07 56.3 8.7 115 112-232 9-134 (350)
81 TIGR03822 AblA_like_2 lysine-2 96.8 0.0083 1.8E-07 55.5 9.1 121 77-208 67-199 (321)
82 TIGR03820 lys_2_3_AblA lysine- 96.8 0.013 2.7E-07 57.0 10.6 134 79-223 89-233 (417)
83 TIGR00538 hemN oxygen-independ 96.7 0.0055 1.2E-07 58.9 8.1 119 110-232 56-187 (455)
84 PRK09249 coproporphyrinogen II 96.7 0.0061 1.3E-07 58.7 8.0 116 111-232 57-187 (453)
85 COG0535 Predicted Fe-S oxidore 96.6 0.018 4E-07 51.3 10.2 110 109-225 25-138 (347)
86 PRK14334 (dimethylallyl)adenos 96.6 0.021 4.5E-07 54.9 11.0 111 103-217 138-257 (440)
87 TIGR01210 conserved hypothetic 96.6 0.046 9.9E-07 50.6 12.6 124 105-232 17-155 (313)
88 PRK14455 ribosomal RNA large s 96.5 0.041 8.9E-07 52.0 11.7 103 99-208 94-218 (356)
89 PRK13347 coproporphyrinogen II 96.3 0.012 2.6E-07 56.7 7.6 118 110-233 57-189 (453)
90 COG0621 MiaB 2-methylthioadeni 96.2 0.042 9E-07 53.7 10.6 108 103-212 144-257 (437)
91 COG1856 Uncharacterized homolo 96.2 0.017 3.6E-07 52.8 7.3 118 102-223 10-131 (275)
92 TIGR02493 PFLA pyruvate format 96.2 0.046 1E-06 47.2 9.9 113 105-225 17-138 (235)
93 PRK06582 coproporphyrinogen II 96.1 0.017 3.8E-07 54.8 7.3 116 111-232 19-147 (390)
94 PRK11145 pflA pyruvate formate 96.1 0.076 1.7E-06 46.4 10.8 118 99-225 17-143 (246)
95 PRK05904 coproporphyrinogen II 96.1 0.022 4.8E-07 53.5 7.8 126 103-232 6-139 (353)
96 PRK08208 coproporphyrinogen II 95.9 0.025 5.4E-07 54.2 7.5 116 111-232 47-177 (430)
97 PRK14456 ribosomal RNA large s 95.9 0.12 2.5E-06 49.4 11.8 109 110-225 128-252 (368)
98 PRK09057 coproporphyrinogen II 95.8 0.037 8.1E-07 52.1 8.1 114 112-232 13-140 (380)
99 TIGR02491 NrdG anaerobic ribon 95.7 0.13 2.8E-06 42.7 9.9 78 99-181 14-95 (154)
100 PRK08898 coproporphyrinogen II 95.6 0.063 1.4E-06 50.9 8.8 117 112-232 28-158 (394)
101 PRK14460 ribosomal RNA large s 95.6 0.14 3E-06 48.5 11.0 100 110-214 109-220 (354)
102 PRK05628 coproporphyrinogen II 95.6 0.08 1.7E-06 49.5 9.2 66 166-232 75-144 (375)
103 PF13394 Fer4_14: 4Fe-4S singl 95.5 0.026 5.7E-07 43.6 4.7 84 109-195 4-92 (119)
104 PRK11121 nrdG anaerobic ribonu 95.3 0.18 3.8E-06 42.1 9.4 83 99-186 15-102 (154)
105 TIGR03470 HpnH hopanoid biosyn 95.3 0.13 2.7E-06 47.6 9.2 114 108-232 33-149 (318)
106 PRK07379 coproporphyrinogen II 95.1 0.11 2.4E-06 49.4 8.7 67 166-233 82-152 (400)
107 PRK14457 ribosomal RNA large s 95.1 0.28 6E-06 46.4 11.2 89 112-207 110-204 (345)
108 COG1032 Fe-S oxidoreductase [E 94.7 0.088 1.9E-06 49.0 6.8 111 104-216 199-320 (490)
109 PRK14466 ribosomal RNA large s 94.7 0.18 3.9E-06 47.9 8.9 88 112-206 112-205 (345)
110 PRK06294 coproporphyrinogen II 94.7 0.14 3.1E-06 48.1 8.1 63 166-231 74-138 (370)
111 PRK14463 ribosomal RNA large s 94.6 0.69 1.5E-05 43.7 12.5 109 110-224 110-224 (349)
112 PRK09058 coproporphyrinogen II 94.3 0.2 4.4E-06 48.4 8.4 50 166-217 130-184 (449)
113 TIGR00640 acid_CoA_mut_C methy 93.8 0.41 8.8E-06 39.3 8.1 69 137-212 43-111 (132)
114 TIGR03278 methan_mark_10 putat 93.8 0.43 9.4E-06 46.1 9.5 110 108-223 27-146 (404)
115 PRK14469 ribosomal RNA large s 93.8 0.65 1.4E-05 43.4 10.4 101 111-217 109-217 (343)
116 PF00977 His_biosynth: Histidi 93.7 0.2 4.3E-06 44.1 6.6 71 133-209 146-216 (229)
117 cd03174 DRE_TIM_metallolyase D 93.6 0.47 1E-05 41.3 8.7 84 130-217 15-98 (265)
118 PRK14462 ribosomal RNA large s 93.6 0.48 1E-05 45.1 9.3 91 112-207 119-218 (356)
119 PRK14468 ribosomal RNA large s 93.6 0.81 1.7E-05 43.1 10.7 109 111-225 101-221 (343)
120 TIGR01769 GGGP geranylgeranylg 93.5 0.32 6.9E-06 43.0 7.5 71 130-210 130-202 (205)
121 PRK08629 coproporphyrinogen II 93.4 0.86 1.9E-05 44.1 10.8 115 110-231 59-180 (433)
122 TIGR00048 radical SAM enzyme, 93.1 1 2.2E-05 42.7 10.6 92 112-209 114-215 (355)
123 PRK13745 anaerobic sulfatase-m 93.0 1.3 2.8E-05 42.2 11.3 118 105-225 14-143 (412)
124 PRK13762 tRNA-modifying enzyme 93.0 0.55 1.2E-05 43.8 8.5 128 89-225 41-199 (322)
125 PRK13587 1-(5-phosphoribosyl)- 92.8 0.59 1.3E-05 41.5 8.1 71 134-210 148-218 (234)
126 PRK14470 ribosomal RNA large s 92.6 1.5 3.3E-05 41.3 10.9 108 112-225 106-222 (336)
127 TIGR01212 radical SAM protein, 92.4 2.2 4.8E-05 39.2 11.6 110 115-233 38-164 (302)
128 PRK14459 ribosomal RNA large s 92.4 1.5 3.2E-05 42.1 10.8 106 99-208 106-237 (373)
129 PRK00748 1-(5-phosphoribosyl)- 92.2 0.88 1.9E-05 39.2 8.3 71 133-209 145-216 (233)
130 PRK14464 ribosomal RNA large s 92.0 1.8 3.8E-05 41.2 10.7 104 99-208 84-198 (344)
131 TIGR03365 Bsubt_queE 7-cyano-7 91.8 1 2.2E-05 40.0 8.3 87 103-197 22-114 (238)
132 PRK00748 1-(5-phosphoribosyl)- 91.8 0.73 1.6E-05 39.8 7.3 75 133-213 29-103 (233)
133 TIGR00007 phosphoribosylformim 91.7 1 2.2E-05 38.9 8.2 71 134-210 145-215 (230)
134 cd04732 HisA HisA. Phosphorib 91.7 1.1 2.5E-05 38.5 8.4 72 133-210 145-216 (234)
135 PRK05848 nicotinate-nucleotide 91.6 0.96 2.1E-05 41.6 8.2 64 137-211 192-255 (273)
136 TIGR01182 eda Entner-Doudoroff 91.4 1.5 3.3E-05 38.7 9.0 69 130-210 16-84 (204)
137 COG0036 Rpe Pentose-5-phosphat 91.4 1.3 2.8E-05 40.0 8.6 75 131-210 116-194 (220)
138 TIGR02826 RNR_activ_nrdG3 anae 91.3 1.4 3E-05 36.7 8.2 78 103-189 15-95 (147)
139 TIGR03572 WbuZ glycosyl amidat 91.3 1 2.2E-05 39.1 7.8 72 133-210 152-224 (232)
140 cd02071 MM_CoA_mut_B12_BD meth 91.3 1.5 3.2E-05 34.8 8.0 68 138-212 41-108 (122)
141 PRK08005 epimerase; Validated 91.0 1.5 3.2E-05 39.0 8.5 75 131-210 113-188 (210)
142 PRK14114 1-(5-phosphoribosyl)- 90.8 0.85 1.8E-05 41.0 6.9 66 134-205 144-209 (241)
143 PRK11194 ribosomal RNA large s 90.8 1.4 3.1E-05 42.1 8.8 66 111-179 111-186 (372)
144 PRK13586 1-(5-phosphoribosyl)- 90.7 1.2 2.5E-05 39.8 7.7 68 134-208 146-213 (232)
145 cd04731 HisF The cyclase subun 90.5 1.3 2.7E-05 38.8 7.6 76 133-214 26-101 (243)
146 TIGR01303 IMP_DH_rel_1 IMP deh 90.4 1.4 3E-05 43.5 8.5 69 134-211 224-292 (475)
147 PRK05096 guanosine 5'-monophos 90.2 1.5 3.4E-05 41.9 8.4 71 132-211 106-177 (346)
148 cd00331 IGPS Indole-3-glycerol 90.2 0.59 1.3E-05 40.2 5.2 82 130-221 27-114 (217)
149 TIGR01768 GGGP-family geranylg 90.2 2.4 5.1E-05 38.2 9.1 74 128-210 129-205 (223)
150 PLN02446 (5-phosphoribosyl)-5- 90.1 1.5 3.4E-05 40.3 8.1 67 134-206 163-229 (262)
151 COG0731 Fe-S oxidoreductases [ 90.1 1.4 3E-05 41.3 7.9 119 88-215 8-138 (296)
152 TIGR00126 deoC deoxyribose-pho 89.9 1.2 2.6E-05 39.5 7.0 75 130-211 128-202 (211)
153 cd02803 OYE_like_FMN_family Ol 89.9 1.5 3.3E-05 39.8 7.9 77 131-210 225-308 (327)
154 cd00959 DeoC 2-deoxyribose-5-p 89.8 1.5 3.2E-05 37.9 7.4 74 130-211 127-201 (203)
155 PRK01033 imidazole glycerol ph 89.4 1.7 3.7E-05 39.0 7.7 72 133-210 151-223 (258)
156 PRK14454 ribosomal RNA large s 89.4 3.4 7.3E-05 39.0 10.0 91 110-207 108-206 (342)
157 cd00381 IMPDH IMPDH: The catal 89.2 3.1 6.7E-05 38.8 9.5 68 135-211 94-161 (325)
158 cd00331 IGPS Indole-3-glycerol 89.1 2.6 5.6E-05 36.2 8.4 65 140-210 134-198 (217)
159 PRK14467 ribosomal RNA large s 89.0 2.1 4.5E-05 40.6 8.3 67 110-178 106-175 (348)
160 TIGR01919 hisA-trpF 1-(5-phosp 88.9 1.7 3.6E-05 39.0 7.3 71 132-208 147-220 (243)
161 PRK06015 keto-hydroxyglutarate 88.9 3.2 6.9E-05 36.7 8.8 69 130-210 12-80 (201)
162 cd02801 DUS_like_FMN Dihydrour 88.8 1.6 3.4E-05 37.4 6.8 72 134-210 138-210 (231)
163 TIGR00735 hisF imidazoleglycer 88.7 2 4.4E-05 38.2 7.6 78 133-216 29-106 (254)
164 PRK07428 nicotinate-nucleotide 88.3 3.2 7E-05 38.5 8.9 64 137-211 206-269 (288)
165 PRK13758 anaerobic sulfatase-m 88.3 6.5 0.00014 36.3 11.0 112 110-225 12-134 (370)
166 cd02812 PcrB_like PcrB_like pr 88.3 2.4 5.2E-05 38.0 7.7 72 129-210 130-201 (219)
167 PRK08091 ribulose-phosphate 3- 88.0 3 6.5E-05 37.6 8.2 75 131-210 125-204 (228)
168 PRK13585 1-(5-phosphoribosyl)- 87.9 2.7 5.9E-05 36.5 7.8 70 135-210 150-219 (241)
169 TIGR01211 ELP3 histone acetylt 87.9 8 0.00017 38.8 11.9 145 64-233 46-243 (522)
170 PRK13585 1-(5-phosphoribosyl)- 87.8 2.2 4.8E-05 37.1 7.1 77 134-216 32-108 (241)
171 TIGR01302 IMP_dehydrog inosine 87.6 3.1 6.7E-05 40.4 8.6 67 135-210 224-290 (450)
172 cd00452 KDPG_aldolase KDPG and 87.5 4.2 9.2E-05 34.5 8.5 69 131-211 13-81 (190)
173 COG1509 KamA Lysine 2,3-aminom 87.4 1 2.3E-05 43.3 5.2 109 57-176 74-187 (369)
174 TIGR01305 GMP_reduct_1 guanosi 87.4 3.2 7E-05 39.7 8.4 68 133-210 106-175 (343)
175 COG3246 Uncharacterized conser 87.4 2.9 6.4E-05 39.3 8.0 94 129-225 24-128 (298)
176 PRK01254 hypothetical protein; 87.3 5.6 0.00012 41.4 10.6 100 107-208 376-513 (707)
177 PF01081 Aldolase: KDPG and KH 87.3 2.7 5.8E-05 37.0 7.4 69 130-210 16-84 (196)
178 PRK00507 deoxyribose-phosphate 87.3 3.2 6.8E-05 37.0 7.9 75 130-211 132-206 (221)
179 PRK08883 ribulose-phosphate 3- 87.3 3.4 7.3E-05 36.6 8.0 76 130-210 112-192 (220)
180 cd04732 HisA HisA. Phosphorib 87.2 2.3 4.9E-05 36.6 6.8 75 131-211 26-100 (234)
181 PRK04128 1-(5-phosphoribosyl)- 87.1 2.1 4.5E-05 38.0 6.6 64 135-209 144-207 (228)
182 PRK05718 keto-hydroxyglutarate 87.1 4.7 0.0001 35.7 8.8 69 130-210 23-91 (212)
183 PRK06843 inosine 5-monophospha 87.0 2.9 6.4E-05 40.7 8.1 68 135-211 153-220 (404)
184 PTZ00314 inosine-5'-monophosph 87.0 4 8.7E-05 40.4 9.2 66 136-210 242-307 (495)
185 COG0635 HemN Coproporphyrinoge 86.8 2.1 4.5E-05 41.4 7.0 105 111-217 42-158 (416)
186 TIGR03572 WbuZ glycosyl amidat 86.6 2.8 6E-05 36.4 7.0 77 133-215 29-105 (232)
187 PRK02083 imidazole glycerol ph 86.5 3.4 7.4E-05 36.5 7.7 79 131-215 27-105 (253)
188 PF05853 DUF849: Prokaryotic p 86.3 2.2 4.9E-05 38.9 6.6 88 129-216 21-111 (272)
189 COG0800 Eda 2-keto-3-deoxy-6-p 86.3 3.3 7.2E-05 37.2 7.4 68 130-210 21-89 (211)
190 COG2516 Biotin synthase-relate 86.2 0.72 1.6E-05 43.9 3.4 114 103-224 29-160 (339)
191 COG4277 Predicted DNA-binding 86.2 0.32 7E-06 46.3 1.1 103 109-218 60-170 (404)
192 PLN02334 ribulose-phosphate 3- 86.2 6.4 0.00014 34.4 9.2 77 131-210 122-199 (229)
193 PRK14453 chloramphenicol/florf 85.9 2.3 4.9E-05 40.3 6.6 63 112-178 109-173 (347)
194 PRK10415 tRNA-dihydrouridine s 85.9 3.8 8.1E-05 38.1 7.9 72 134-210 149-221 (321)
195 PF01729 QRPTase_C: Quinolinat 85.8 4.4 9.5E-05 34.7 7.7 64 137-211 90-153 (169)
196 PRK00278 trpC indole-3-glycero 85.8 3.5 7.5E-05 37.3 7.5 73 131-213 67-140 (260)
197 cd02067 B12-binding B12 bindin 85.8 8.8 0.00019 29.7 8.9 68 138-213 41-109 (119)
198 cd00956 Transaldolase_FSA Tran 85.7 5.3 0.00012 35.1 8.4 70 139-211 114-183 (211)
199 cd04731 HisF The cyclase subun 85.5 4.1 9E-05 35.6 7.6 71 133-209 148-219 (243)
200 PRK08745 ribulose-phosphate 3- 85.4 7.7 0.00017 34.6 9.3 76 130-210 116-196 (223)
201 PLN02617 imidazole glycerol ph 85.4 3.2 7E-05 41.7 7.7 69 134-208 438-507 (538)
202 PRK14024 phosphoribosyl isomer 85.0 4.8 0.0001 35.7 7.9 71 133-209 145-218 (241)
203 PRK14461 ribosomal RNA large s 84.8 11 0.00025 36.3 10.8 91 112-207 116-226 (371)
204 PRK14057 epimerase; Provisiona 84.8 5.4 0.00012 36.6 8.3 73 131-210 139-218 (254)
205 PRK04169 geranylgeranylglycery 84.8 6.9 0.00015 35.3 8.8 73 128-210 134-210 (232)
206 PRK07107 inosine 5-monophospha 84.8 5.1 0.00011 39.9 8.7 72 131-210 238-309 (502)
207 TIGR00735 hisF imidazoleglycer 84.5 4.2 9E-05 36.2 7.3 71 133-209 154-225 (254)
208 cd07943 DRE_TIM_HOA 4-hydroxy- 84.5 2.8 6.2E-05 37.4 6.2 75 131-212 138-216 (263)
209 COG2185 Sbm Methylmalonyl-CoA 84.5 6.8 0.00015 33.2 8.1 72 130-211 49-120 (143)
210 PRK01033 imidazole glycerol ph 84.4 4.3 9.2E-05 36.4 7.3 78 134-217 30-107 (258)
211 cd02810 DHOD_DHPD_FMN Dihydroo 84.3 4.9 0.00011 35.9 7.7 80 130-210 172-269 (289)
212 cd07943 DRE_TIM_HOA 4-hydroxy- 84.3 10 0.00023 33.8 9.8 79 129-211 17-103 (263)
213 PRK07114 keto-hydroxyglutarate 84.2 8.8 0.00019 34.4 9.2 73 130-210 23-95 (222)
214 cd04735 OYE_like_4_FMN Old yel 84.1 3.9 8.4E-05 38.3 7.2 80 130-210 231-310 (353)
215 PRK09722 allulose-6-phosphate 84.0 4.1 8.9E-05 36.6 7.0 75 131-210 115-194 (229)
216 TIGR00007 phosphoribosylformim 83.8 4.6 9.9E-05 34.9 7.0 72 134-211 28-99 (230)
217 PF00478 IMPDH: IMP dehydrogen 83.7 3.6 7.8E-05 39.4 6.9 67 136-211 109-175 (352)
218 PF00682 HMGL-like: HMGL-like 83.6 4.6 9.9E-05 35.0 7.0 75 130-211 133-211 (237)
219 PRK14465 ribosomal RNA large s 83.6 3.9 8.5E-05 38.8 7.0 88 112-204 114-207 (342)
220 cd04723 HisA_HisF Phosphoribos 83.3 4.4 9.6E-05 35.8 6.9 71 133-210 145-215 (233)
221 PRK14024 phosphoribosyl isomer 83.0 5.4 0.00012 35.3 7.3 77 135-218 33-109 (241)
222 PLN02274 inosine-5'-monophosph 82.9 4.9 0.00011 39.9 7.7 67 135-210 248-314 (505)
223 cd04729 NanE N-acetylmannosami 82.8 4 8.7E-05 35.3 6.3 68 140-210 136-203 (219)
224 TIGR00737 nifR3_yhdG putative 82.8 8.3 0.00018 35.4 8.7 71 134-209 147-218 (319)
225 cd04738 DHOD_2_like Dihydrooro 82.7 4.5 9.8E-05 37.5 7.0 79 131-210 213-306 (327)
226 PRK07807 inosine 5-monophospha 82.5 6.8 0.00015 38.8 8.5 83 134-231 226-308 (479)
227 PLN02446 (5-phosphoribosyl)-5- 82.5 3.5 7.5E-05 38.0 6.0 68 133-213 42-111 (262)
228 KOG3111 D-ribulose-5-phosphate 82.4 7.2 0.00016 35.2 7.8 73 131-210 119-194 (224)
229 TIGR02129 hisA_euk phosphoribo 82.3 6.5 0.00014 36.0 7.7 61 138-205 162-222 (253)
230 PRK05286 dihydroorotate dehydr 82.2 7.9 0.00017 36.3 8.5 79 131-210 222-315 (344)
231 TIGR03217 4OH_2_O_val_ald 4-hy 82.1 7 0.00015 36.7 8.1 79 130-211 20-105 (333)
232 COG0107 HisF Imidazoleglycerol 82.0 7.2 0.00016 36.0 7.8 96 115-219 138-241 (256)
233 TIGR00734 hisAF_rel hisA/hisF 82.0 6.5 0.00014 34.7 7.4 68 135-209 142-209 (221)
234 cd02932 OYE_YqiM_FMN Old yello 81.9 6.1 0.00013 36.6 7.5 78 130-210 237-317 (336)
235 PRK02261 methylaspartate mutas 81.7 16 0.00035 30.0 9.2 70 138-212 45-118 (137)
236 COG0106 HisA Phosphoribosylfor 81.6 7 0.00015 35.8 7.6 71 131-208 144-216 (241)
237 TIGR03128 RuMP_HxlA 3-hexulose 81.5 9.4 0.0002 32.3 8.0 75 131-211 110-184 (206)
238 PRK07259 dihydroorotate dehydr 81.5 6.9 0.00015 35.5 7.6 77 131-210 166-260 (301)
239 PRK05567 inosine 5'-monophosph 81.4 8.1 0.00018 37.9 8.5 68 135-211 228-295 (486)
240 PRK08195 4-hyroxy-2-oxovalerat 81.0 12 0.00025 35.3 9.1 79 130-211 21-106 (337)
241 PRK01130 N-acetylmannosamine-6 80.3 5.6 0.00012 34.3 6.3 68 140-210 132-199 (221)
242 PRK06096 molybdenum transport 80.3 13 0.00028 34.6 9.0 64 136-210 198-261 (284)
243 cd04734 OYE_like_3_FMN Old yel 80.2 8.6 0.00019 36.0 8.0 76 131-209 225-311 (343)
244 PRK02083 imidazole glycerol ph 80.0 8.4 0.00018 34.1 7.5 69 134-208 153-222 (253)
245 cd04733 OYE_like_2_FMN Old yel 79.9 9.4 0.0002 35.4 8.1 78 130-210 232-319 (338)
246 cd07941 DRE_TIM_LeuA3 Desulfob 79.8 6.2 0.00013 35.7 6.7 74 131-211 148-225 (273)
247 PRK13125 trpA tryptophan synth 79.7 14 0.00031 32.7 8.9 41 167-210 170-211 (244)
248 PRK00955 hypothetical protein; 79.2 27 0.0006 35.9 11.7 47 103-149 291-341 (620)
249 TIGR02320 PEP_mutase phosphoen 79.1 7.7 0.00017 35.9 7.2 73 132-212 167-239 (285)
250 cd07938 DRE_TIM_HMGL 3-hydroxy 79.0 13 0.00028 33.8 8.6 76 130-212 145-224 (274)
251 KOG2876 Molybdenum cofactor bi 79.0 1.2 2.6E-05 41.8 1.8 101 110-216 18-122 (323)
252 PRK05692 hydroxymethylglutaryl 78.9 6.6 0.00014 36.1 6.6 79 130-215 151-233 (287)
253 PRK08385 nicotinate-nucleotide 78.8 14 0.0003 34.2 8.7 67 136-211 191-257 (278)
254 PRK07896 nicotinate-nucleotide 78.8 13 0.00029 34.6 8.7 62 139-211 211-272 (289)
255 TIGR01334 modD putative molybd 78.7 13 0.00029 34.4 8.5 64 136-210 197-260 (277)
256 PRK13587 1-(5-phosphoribosyl)- 78.7 12 0.00025 33.4 8.0 86 134-225 31-119 (234)
257 PRK14114 1-(5-phosphoribosyl)- 78.6 12 0.00026 33.6 8.1 81 132-219 28-108 (241)
258 TIGR01496 DHPS dihydropteroate 78.3 11 0.00023 34.1 7.7 82 130-216 19-106 (257)
259 KOG2550 IMP dehydrogenase/GMP 78.1 7.7 0.00017 38.5 7.1 65 142-215 258-322 (503)
260 TIGR00875 fsa_talC_mipB fructo 77.8 15 0.00032 32.7 8.3 71 138-211 113-183 (213)
261 PRK10550 tRNA-dihydrouridine s 77.7 10 0.00022 35.3 7.6 74 132-209 146-220 (312)
262 TIGR01037 pyrD_sub1_fam dihydr 77.6 13 0.00028 33.6 8.1 76 131-209 166-259 (300)
263 cd07939 DRE_TIM_NifV Streptomy 77.0 8 0.00017 34.4 6.5 73 131-211 136-212 (259)
264 cd07937 DRE_TIM_PC_TC_5S Pyruv 76.9 9.3 0.0002 34.6 6.9 75 130-212 145-223 (275)
265 PRK05692 hydroxymethylglutaryl 76.9 19 0.00041 33.1 9.0 82 129-218 21-104 (287)
266 PRK06552 keto-hydroxyglutarate 76.9 18 0.00038 32.0 8.5 69 130-210 21-92 (213)
267 PRK04128 1-(5-phosphoribosyl)- 76.5 11 0.00024 33.4 7.2 76 135-217 31-106 (228)
268 cd04823 ALAD_PBGS_aspartate_ri 76.3 12 0.00027 35.6 7.7 82 130-211 50-160 (320)
269 cd00959 DeoC 2-deoxyribose-5-p 76.3 25 0.00053 30.3 9.1 78 131-210 66-148 (203)
270 PRK01362 putative translaldola 76.2 16 0.00036 32.4 8.2 72 139-213 114-185 (214)
271 PRK13523 NADPH dehydrogenase N 75.8 12 0.00026 35.2 7.5 77 130-209 223-301 (337)
272 cd04733 OYE_like_2_FMN Old yel 75.7 29 0.00063 32.2 10.0 83 128-211 136-254 (338)
273 cd07940 DRE_TIM_IPMS 2-isoprop 75.6 16 0.00034 32.7 8.0 75 130-211 139-219 (268)
274 PRK11572 copper homeostasis pr 75.5 12 0.00026 34.3 7.2 60 146-205 50-112 (248)
275 COG1180 PflA Pyruvate-formate 74.9 38 0.00083 30.6 10.3 93 103-205 35-134 (260)
276 cd07945 DRE_TIM_CMS Leptospira 74.8 17 0.00037 33.3 8.1 75 131-212 144-222 (280)
277 PRK09426 methylmalonyl-CoA mut 74.8 14 0.00029 38.6 8.2 83 136-225 622-708 (714)
278 cd01568 QPRTase_NadC Quinolina 74.7 16 0.00035 33.2 7.9 68 131-211 186-253 (269)
279 PRK13586 1-(5-phosphoribosyl)- 74.7 23 0.00051 31.5 8.8 78 134-218 30-107 (232)
280 cd02810 DHOD_DHPD_FMN Dihydroo 74.6 30 0.00064 30.9 9.5 79 132-213 109-197 (289)
281 PF15088 NADH_dh_m_C1: NADH de 74.6 2.9 6.3E-05 29.4 2.3 24 44-67 3-26 (49)
282 TIGR02090 LEU1_arch isopropylm 74.3 28 0.00061 32.9 9.7 78 129-216 17-94 (363)
283 cd04723 HisA_HisF Phosphoribos 74.0 12 0.00025 33.1 6.7 82 131-219 32-113 (233)
284 PRK00043 thiE thiamine-phospha 73.9 20 0.00042 30.1 7.7 68 140-211 117-186 (212)
285 COG1646 Predicted phosphate-bi 73.7 30 0.00065 31.8 9.2 73 127-210 143-217 (240)
286 COG0113 HemB Delta-aminolevuli 73.6 19 0.0004 34.4 8.1 82 130-211 57-168 (330)
287 cd07940 DRE_TIM_IPMS 2-isoprop 73.4 23 0.00051 31.6 8.5 72 130-211 16-91 (268)
288 COG3142 CutC Uncharacterized p 73.1 17 0.00036 33.4 7.5 60 146-205 50-112 (241)
289 PRK05283 deoxyribose-phosphate 73.1 16 0.00036 33.6 7.5 89 130-221 142-231 (257)
290 TIGR03217 4OH_2_O_val_ald 4-hy 73.0 9.4 0.0002 35.9 6.1 75 130-211 139-218 (333)
291 PRK08195 4-hyroxy-2-oxovalerat 72.5 18 0.0004 34.0 7.9 75 130-211 140-219 (337)
292 PRK09283 delta-aminolevulinic 72.4 29 0.00062 33.2 9.1 55 130-184 55-114 (323)
293 cd00423 Pterin_binding Pterin 72.1 22 0.00047 31.8 8.0 82 130-216 20-107 (258)
294 cd07948 DRE_TIM_HCS Saccharomy 72.0 20 0.00044 32.5 7.8 75 129-213 17-91 (262)
295 PF01702 TGT: Queuine tRNA-rib 71.4 26 0.00056 30.9 8.2 75 132-212 66-140 (238)
296 PLN02591 tryptophan synthase 71.2 27 0.00059 31.7 8.4 40 167-209 175-214 (250)
297 TIGR02660 nifV_homocitr homoci 71.1 37 0.00079 32.1 9.6 80 129-218 18-97 (365)
298 COG0641 AslB Arylsulfatase reg 70.7 76 0.0016 30.6 11.7 117 106-225 9-132 (378)
299 PRK09140 2-dehydro-3-deoxy-6-p 70.5 32 0.00069 30.1 8.5 70 130-211 18-88 (206)
300 cd01573 modD_like ModD; Quinol 70.0 23 0.0005 32.4 7.8 60 140-210 196-255 (272)
301 cd02930 DCR_FMN 2,4-dienoyl-Co 69.8 22 0.00048 33.2 7.8 78 130-210 220-303 (353)
302 CHL00200 trpA tryptophan synth 69.7 34 0.00073 31.3 8.8 40 167-209 188-227 (263)
303 PF01136 Peptidase_U32: Peptid 69.6 32 0.00069 29.6 8.3 66 134-213 2-67 (233)
304 cd00452 KDPG_aldolase KDPG and 69.4 25 0.00053 29.9 7.4 60 140-211 110-169 (190)
305 cd04740 DHOD_1B_like Dihydroor 68.9 28 0.0006 31.3 8.0 77 131-210 163-257 (296)
306 PF01884 PcrB: PcrB family; I 68.7 23 0.00049 32.1 7.3 91 106-210 116-208 (230)
307 cd07944 DRE_TIM_HOA_like 4-hyd 68.7 26 0.00056 31.7 7.8 82 130-211 16-100 (266)
308 PRK13384 delta-aminolevulinic 68.6 33 0.00072 32.7 8.6 82 130-211 57-165 (322)
309 cd00384 ALAD_PBGS Porphobilino 68.4 37 0.0008 32.3 8.9 55 130-184 47-106 (314)
310 cd02931 ER_like_FMN Enoate red 68.0 61 0.0013 30.9 10.5 85 128-212 137-271 (382)
311 cd02931 ER_like_FMN Enoate red 67.9 22 0.00047 33.9 7.4 76 131-209 249-331 (382)
312 PRK12656 fructose-6-phosphate 67.3 36 0.00079 30.5 8.3 70 139-211 118-187 (222)
313 PLN02746 hydroxymethylglutaryl 67.3 17 0.00036 34.7 6.5 34 166-200 196-229 (347)
314 PRK01130 N-acetylmannosamine-6 67.1 42 0.0009 28.9 8.5 66 138-211 79-144 (221)
315 cd00564 TMP_TenI Thiamine mono 66.9 20 0.00044 29.1 6.2 65 138-210 106-175 (196)
316 cd02801 DUS_like_FMN Dihydrour 66.8 45 0.00098 28.4 8.6 81 131-212 64-157 (231)
317 PRK13753 dihydropteroate synth 66.7 36 0.00078 31.7 8.4 76 130-212 21-102 (279)
318 PF00977 His_biosynth: Histidi 66.6 17 0.00036 32.0 6.0 83 131-219 26-108 (229)
319 cd07939 DRE_TIM_NifV Streptomy 66.3 63 0.0014 28.7 9.7 76 129-214 15-90 (259)
320 cd04730 NPD_like 2-Nitropropan 65.6 31 0.00067 29.5 7.4 69 138-210 113-182 (236)
321 PRK13957 indole-3-glycerol-pho 64.9 28 0.00061 31.8 7.2 68 133-210 60-128 (247)
322 TIGR01306 GMP_reduct_2 guanosi 64.8 47 0.001 31.4 8.9 70 131-210 91-162 (321)
323 cd04726 KGPDC_HPS 3-Keto-L-gul 64.6 21 0.00045 29.9 6.0 73 131-210 111-183 (202)
324 cd02803 OYE_like_FMN_family Ol 64.5 87 0.0019 28.4 10.4 84 128-211 128-246 (327)
325 PRK05742 nicotinate-nucleotide 64.4 31 0.00067 31.9 7.5 61 137-211 199-259 (277)
326 TIGR00262 trpA tryptophan synt 64.4 27 0.00059 31.5 7.0 41 167-210 184-224 (256)
327 PRK12330 oxaloacetate decarbox 64.3 38 0.00082 34.0 8.5 79 131-216 152-235 (499)
328 PRK07455 keto-hydroxyglutarate 63.8 40 0.00088 28.9 7.7 74 130-215 20-96 (187)
329 cd03412 CbiK_N Anaerobic cobal 63.8 49 0.0011 26.6 7.8 63 138-205 60-122 (127)
330 TIGR00973 leuA_bact 2-isopropy 63.6 18 0.00039 35.8 6.2 75 130-211 142-223 (494)
331 TIGR00078 nadC nicotinate-nucl 63.5 44 0.00096 30.5 8.3 60 138-211 189-248 (265)
332 cd04747 OYE_like_5_FMN Old yel 63.3 91 0.002 29.7 10.6 85 128-212 131-254 (361)
333 PRK00115 hemE uroporphyrinogen 63.2 37 0.0008 31.5 7.9 83 135-223 187-281 (346)
334 PRK05458 guanosine 5'-monophos 63.2 46 0.00099 31.6 8.5 65 137-210 99-165 (326)
335 TIGR00126 deoC deoxyribose-pho 63.0 29 0.00063 30.7 6.8 85 131-221 67-156 (211)
336 PLN02617 imidazole glycerol ph 62.9 41 0.00089 34.0 8.6 85 129-218 262-359 (538)
337 COG0602 NrdG Organic radical a 62.7 35 0.00076 30.0 7.3 61 110-175 29-97 (212)
338 TIGR01919 hisA-trpF 1-(5-phosp 62.6 42 0.00091 30.1 7.9 98 106-218 9-108 (243)
339 PRK13523 NADPH dehydrogenase N 62.6 68 0.0015 30.1 9.6 85 128-212 129-246 (337)
340 TIGR02660 nifV_homocitr homoci 62.5 23 0.00051 33.4 6.5 75 130-211 138-215 (365)
341 PRK10605 N-ethylmaleimide redu 62.5 59 0.0013 30.8 9.2 86 125-211 143-267 (362)
342 cd02933 OYE_like_FMN Old yello 62.5 68 0.0015 30.1 9.5 84 128-211 139-259 (338)
343 PF03932 CutC: CutC family; I 62.5 17 0.00036 32.2 5.1 75 145-219 48-128 (201)
344 cd02072 Glm_B12_BD B12 binding 62.2 84 0.0018 25.9 9.0 68 137-210 40-112 (128)
345 PRK07259 dihydroorotate dehydr 62.1 43 0.00093 30.3 7.9 77 132-210 102-186 (301)
346 PLN02746 hydroxymethylglutaryl 62.1 57 0.0012 31.2 9.0 99 109-220 49-148 (347)
347 cd04740 DHOD_1B_like Dihydroor 61.9 57 0.0012 29.3 8.7 76 132-210 100-183 (296)
348 PRK08072 nicotinate-nucleotide 61.6 48 0.001 30.6 8.2 60 138-211 199-258 (277)
349 COG0648 Nfo Endonuclease IV [D 61.0 20 0.00043 33.4 5.6 71 134-204 87-159 (280)
350 PRK08649 inosine 5-monophospha 60.5 28 0.00061 33.4 6.7 74 132-210 139-212 (368)
351 COG0107 HisF Imidazoleglycerol 60.3 66 0.0014 29.8 8.7 79 130-217 26-107 (256)
352 TIGR01037 pyrD_sub1_fam dihydr 60.2 75 0.0016 28.7 9.1 80 132-213 101-190 (300)
353 cd00945 Aldolase_Class_I Class 60.2 82 0.0018 25.5 8.6 80 131-211 62-147 (201)
354 COG0274 DeoC Deoxyribose-phosp 59.9 32 0.00069 31.4 6.5 75 130-211 136-210 (228)
355 cd04724 Tryptophan_synthase_al 59.6 36 0.00078 30.2 6.9 76 131-210 136-212 (242)
356 cd02930 DCR_FMN 2,4-dienoyl-Co 59.6 92 0.002 29.1 9.9 85 128-212 124-243 (353)
357 PRK07695 transcriptional regul 59.6 34 0.00074 29.0 6.5 64 139-210 107-174 (201)
358 PRK13307 bifunctional formalde 59.6 49 0.0011 32.2 8.2 72 130-210 283-355 (391)
359 COG0159 TrpA Tryptophan syntha 59.3 54 0.0012 30.4 8.1 39 166-208 190-228 (265)
360 cd03174 DRE_TIM_metallolyase D 59.0 73 0.0016 27.5 8.6 34 167-201 146-179 (265)
361 PRK00278 trpC indole-3-glycero 58.9 37 0.00081 30.6 6.9 64 141-210 174-237 (260)
362 PRK05283 deoxyribose-phosphate 58.8 45 0.00097 30.7 7.4 98 117-222 67-172 (257)
363 PRK00507 deoxyribose-phosphate 58.8 55 0.0012 29.1 7.8 81 134-220 74-159 (221)
364 cd00739 DHPS DHPS subgroup of 58.7 51 0.0011 29.8 7.7 87 130-222 20-114 (257)
365 cd00950 DHDPS Dihydrodipicolin 58.7 14 0.00031 33.0 4.2 92 130-225 17-122 (284)
366 cd01572 QPRTase Quinolinate ph 58.6 33 0.00072 31.3 6.6 60 138-211 193-252 (268)
367 PF02581 TMP-TENI: Thiamine mo 58.5 23 0.0005 29.7 5.2 63 140-210 108-174 (180)
368 PRK00915 2-isopropylmalate syn 58.4 27 0.00059 34.7 6.4 74 131-211 146-226 (513)
369 cd01300 YtcJ_like YtcJ_like me 57.9 44 0.00095 32.0 7.6 74 130-209 291-365 (479)
370 KOG4039 Serine/threonine kinas 57.8 12 0.00027 33.7 3.5 45 115-159 84-135 (238)
371 PRK12653 fructose-6-phosphate 57.7 48 0.001 29.6 7.3 79 141-222 118-196 (220)
372 PRK06096 molybdenum transport 57.6 21 0.00045 33.3 5.1 39 168-210 175-213 (284)
373 cd00408 DHDPS-like Dihydrodipi 57.4 17 0.00037 32.3 4.4 92 130-225 14-119 (281)
374 PRK02269 ribose-phosphate pyro 57.3 22 0.00048 33.2 5.3 43 167-210 231-273 (320)
375 PLN02321 2-isopropylmalate syn 57.2 28 0.0006 35.9 6.3 76 130-212 236-318 (632)
376 PF00490 ALAD: Delta-aminolevu 57.1 40 0.00087 32.2 7.0 55 131-185 54-115 (324)
377 PLN03228 methylthioalkylmalate 56.9 24 0.00053 35.3 5.8 32 167-199 239-270 (503)
378 cd00951 KDGDH 5-dehydro-4-deox 56.9 10 0.00023 34.4 3.0 94 129-226 16-122 (289)
379 cd02933 OYE_like_FMN Old yello 56.6 45 0.00097 31.3 7.2 73 131-210 238-311 (338)
380 PRK09016 quinolinate phosphori 56.3 56 0.0012 30.7 7.8 61 137-211 218-278 (296)
381 cd00564 TMP_TenI Thiamine mono 56.2 66 0.0014 26.1 7.4 67 133-211 11-77 (196)
382 PRK05985 cytosine deaminase; P 56.0 59 0.0013 30.3 7.9 81 131-216 188-274 (391)
383 COG1243 ELP3 Histone acetyltra 56.0 49 0.0011 33.4 7.6 146 69-233 50-235 (515)
384 TIGR01163 rpe ribulose-phospha 55.8 74 0.0016 26.6 7.8 25 185-210 166-190 (210)
385 PLN02433 uroporphyrinogen deca 55.7 53 0.0011 30.5 7.5 80 136-222 181-273 (345)
386 COG1313 PflX Uncharacterized F 55.7 46 0.00099 31.9 7.0 91 111-210 126-219 (335)
387 PRK12331 oxaloacetate decarbox 55.5 63 0.0014 31.8 8.3 78 130-215 150-231 (448)
388 PRK14041 oxaloacetate decarbox 55.5 60 0.0013 32.2 8.2 77 130-214 149-229 (467)
389 PRK05437 isopentenyl pyrophosp 55.2 65 0.0014 30.5 8.1 71 137-211 200-288 (352)
390 PRK09282 pyruvate carboxylase 55.2 59 0.0013 33.1 8.3 77 130-213 150-229 (592)
391 PF01791 DeoC: DeoC/LacD famil 55.1 17 0.00038 31.7 4.0 76 132-210 144-225 (236)
392 PRK07094 biotin synthase; Prov 55.1 78 0.0017 28.7 8.4 83 132-214 193-281 (323)
393 PTZ00372 endonuclease 4-like p 55.0 58 0.0013 32.0 7.9 84 135-218 219-311 (413)
394 PRK03170 dihydrodipicolinate s 55.0 19 0.00042 32.4 4.4 93 130-226 18-124 (292)
395 PRK11858 aksA trans-homoaconit 54.6 1E+02 0.0023 29.3 9.4 79 130-218 22-100 (378)
396 cd07944 DRE_TIM_HOA_like 4-hyd 54.4 84 0.0018 28.4 8.4 65 132-203 107-173 (266)
397 TIGR00693 thiE thiamine-phosph 54.4 49 0.0011 27.6 6.5 63 141-210 110-177 (196)
398 PF03932 CutC: CutC family; I 54.3 37 0.00081 30.0 6.0 68 136-211 129-197 (201)
399 COG1902 NemA NADH:flavin oxido 54.3 67 0.0015 30.8 8.1 78 130-210 233-315 (363)
400 PRK15452 putative protease; Pr 54.3 99 0.0021 30.4 9.4 77 131-210 43-138 (443)
401 PRK06106 nicotinate-nucleotide 54.2 52 0.0011 30.6 7.2 60 138-211 205-264 (281)
402 PTZ00170 D-ribulose-5-phosphat 54.1 33 0.00073 30.3 5.7 59 148-210 139-198 (228)
403 PRK12655 fructose-6-phosphate 53.7 75 0.0016 28.4 7.8 78 141-221 118-195 (220)
404 cd02070 corrinoid_protein_B12- 53.6 66 0.0014 27.6 7.3 78 131-219 120-197 (201)
405 PRK01060 endonuclease IV; Prov 53.6 83 0.0018 27.6 8.1 72 133-204 88-166 (281)
406 cd00717 URO-D Uroporphyrinogen 53.2 71 0.0015 29.2 7.9 81 136-222 179-271 (335)
407 PRK08255 salicylyl-CoA 5-hydro 53.1 1.3E+02 0.0027 31.4 10.4 84 128-211 538-656 (765)
408 cd00439 Transaldolase Transald 53.0 57 0.0012 29.5 7.1 67 140-211 153-232 (252)
409 cd00952 CHBPH_aldolase Trans-o 52.8 13 0.00029 34.2 3.1 94 129-226 24-131 (309)
410 cd02809 alpha_hydroxyacid_oxid 52.5 53 0.0011 30.0 6.9 71 131-210 126-197 (299)
411 cd04739 DHOD_like Dihydroorota 52.4 1.1E+02 0.0023 28.6 8.9 79 132-210 110-192 (325)
412 cd02809 alpha_hydroxyacid_oxid 52.2 76 0.0017 28.9 7.9 69 138-210 184-253 (299)
413 TIGR00642 mmCoA_mut_beta methy 52.2 39 0.00085 34.7 6.5 67 135-212 534-600 (619)
414 PRK11815 tRNA-dihydrouridine s 52.1 44 0.00096 31.2 6.4 73 133-208 150-228 (333)
415 cd02911 arch_FMN Archeal FMN-b 52.1 74 0.0016 28.3 7.6 66 134-210 152-217 (233)
416 PRK11613 folP dihydropteroate 52.0 50 0.0011 30.6 6.7 77 130-211 34-115 (282)
417 PRK11858 aksA trans-homoaconit 51.9 43 0.00092 31.9 6.4 74 131-212 142-219 (378)
418 COG0352 ThiE Thiamine monophos 51.9 59 0.0013 28.9 6.9 64 138-211 115-184 (211)
419 cd02932 OYE_YqiM_FMN Old yello 51.7 1.1E+02 0.0023 28.3 8.9 84 128-211 141-259 (336)
420 PF00218 IGPS: Indole-3-glycer 51.6 61 0.0013 29.6 7.1 68 133-210 67-135 (254)
421 TIGR03151 enACPred_II putative 51.5 62 0.0013 30.0 7.2 68 138-210 120-187 (307)
422 PRK07565 dihydroorotate dehydr 51.5 83 0.0018 29.1 8.1 75 132-209 175-264 (334)
423 PRK08255 salicylyl-CoA 5-hydro 51.1 54 0.0012 34.0 7.4 74 130-206 634-709 (765)
424 TIGR01108 oadA oxaloacetate de 51.0 72 0.0016 32.5 8.1 76 131-213 146-224 (582)
425 cd00958 DhnA Class I fructose- 51.0 75 0.0016 27.5 7.3 66 131-210 140-211 (235)
426 TIGR00587 nfo apurinic endonuc 51.0 86 0.0019 28.1 7.9 87 131-217 85-179 (274)
427 TIGR00977 LeuA_rel 2-isopropyl 50.6 45 0.00097 33.5 6.5 75 131-212 151-229 (526)
428 TIGR01334 modD putative molybd 50.3 35 0.00075 31.6 5.3 39 168-210 174-212 (277)
429 COG4130 Predicted sugar epimer 50.1 45 0.00097 30.8 5.8 92 133-225 82-191 (272)
430 PRK09016 quinolinate phosphori 50.0 35 0.00077 32.0 5.4 38 169-210 195-232 (296)
431 TIGR01036 pyrD_sub2 dihydrooro 49.9 93 0.002 29.2 8.2 77 132-209 222-313 (335)
432 TIGR03128 RuMP_HxlA 3-hexulose 49.8 75 0.0016 26.8 7.0 77 130-216 8-86 (206)
433 cd04726 KGPDC_HPS 3-Keto-L-gul 49.5 68 0.0015 26.7 6.6 77 130-215 9-86 (202)
434 PRK07188 nicotinate phosphorib 49.5 81 0.0018 30.2 7.8 42 167-211 264-308 (352)
435 PF00682 HMGL-like: HMGL-like 49.3 93 0.002 26.8 7.6 64 133-203 107-172 (237)
436 TIGR00674 dapA dihydrodipicoli 49.2 28 0.0006 31.4 4.5 93 130-226 15-121 (285)
437 PRK07565 dihydroorotate dehydr 49.2 1.2E+02 0.0027 28.0 8.9 77 132-210 112-194 (334)
438 COG0167 PyrD Dihydroorotate de 49.2 1.1E+02 0.0024 29.0 8.5 92 132-224 171-284 (310)
439 PRK10076 pyruvate formate lyas 49.1 91 0.002 27.5 7.6 82 130-211 50-163 (213)
440 PF09505 Dimeth_Pyl: Dimethyla 49.1 14 0.00031 35.8 2.6 63 163-225 218-300 (466)
441 cd02811 IDI-2_FMN Isopentenyl- 49.1 84 0.0018 29.3 7.7 70 137-210 192-281 (326)
442 PRK07896 nicotinate-nucleotide 48.9 38 0.00082 31.6 5.4 49 168-220 185-236 (289)
443 cd08579 GDPD_memb_like Glycero 48.8 1.6E+02 0.0035 25.0 9.0 72 136-219 114-203 (220)
444 PF00834 Ribul_P_3_epim: Ribul 48.5 16 0.00035 32.0 2.8 59 148-210 128-191 (201)
445 PF08091 Toxin_21: Spider inse 48.4 19 0.00041 24.2 2.4 29 87-117 8-36 (39)
446 TIGR00676 fadh2 5,10-methylene 48.4 84 0.0018 28.4 7.5 79 131-209 70-160 (272)
447 PRK06978 nicotinate-nucleotide 48.3 83 0.0018 29.6 7.5 61 137-211 215-275 (294)
448 PRK06512 thiamine-phosphate py 48.3 64 0.0014 28.5 6.5 64 140-211 124-190 (221)
449 TIGR01464 hemE uroporphyrinoge 48.2 1E+02 0.0022 28.3 8.1 82 136-223 182-275 (338)
450 PRK11572 copper homeostasis pr 48.2 1E+02 0.0022 28.3 8.0 70 135-213 129-198 (248)
451 PF01261 AP_endonuc_2: Xylose 48.2 18 0.00039 29.3 2.9 85 133-217 70-166 (213)
452 COG1242 Predicted Fe-S oxidore 48.1 1.7E+02 0.0037 27.9 9.5 99 87-212 34-187 (312)
453 PRK04923 ribose-phosphate pyro 48.1 45 0.00098 31.3 5.8 78 131-210 173-273 (319)
454 TIGR01163 rpe ribulose-phospha 48.0 66 0.0014 26.9 6.3 71 131-209 8-82 (210)
455 cd00537 MTHFR Methylenetetrahy 47.8 56 0.0012 29.2 6.2 50 131-180 70-125 (274)
456 cd00019 AP2Ec AP endonuclease 47.8 84 0.0018 27.7 7.2 74 133-206 84-166 (279)
457 PF00809 Pterin_bind: Pterin b 47.8 49 0.0011 28.8 5.6 79 130-212 15-98 (210)
458 COG0134 TrpC Indole-3-glycerol 47.7 42 0.0009 31.0 5.4 67 133-209 65-132 (254)
459 cd04735 OYE_like_4_FMN Old yel 47.6 2.4E+02 0.0053 26.4 10.6 84 128-211 131-253 (353)
460 cd00381 IMPDH IMPDH: The catal 47.5 77 0.0017 29.6 7.2 68 138-209 147-222 (325)
461 PRK10550 tRNA-dihydrouridine s 47.0 50 0.0011 30.7 5.9 88 131-219 72-174 (312)
462 KOG2335 tRNA-dihydrouridine sy 46.9 1.1E+02 0.0023 29.8 8.1 77 130-210 151-230 (358)
463 PRK06106 nicotinate-nucleotide 46.9 44 0.00096 31.1 5.5 49 169-221 180-232 (281)
464 PRK07535 methyltetrahydrofolat 46.8 1.2E+02 0.0026 27.6 8.2 78 130-215 21-101 (261)
465 PRK06559 nicotinate-nucleotide 46.8 96 0.0021 29.1 7.7 60 137-210 207-266 (290)
466 TIGR02129 hisA_euk phosphoribo 46.8 69 0.0015 29.4 6.7 77 134-225 38-122 (253)
467 cd04824 eu_ALAD_PBGS_cysteine_ 46.7 53 0.0011 31.4 6.0 82 130-211 47-159 (320)
468 TIGR02631 xylA_Arthro xylose i 46.3 56 0.0012 31.3 6.2 83 134-216 115-223 (382)
469 TIGR00677 fadh2_euk methylenet 46.1 96 0.0021 28.4 7.5 79 131-209 71-164 (281)
470 cd00945 Aldolase_Class_I Class 46.1 1.1E+02 0.0023 24.7 7.2 64 132-210 11-82 (201)
471 cd04729 NanE N-acetylmannosami 45.8 1.5E+02 0.0032 25.5 8.3 66 138-211 83-148 (219)
472 TIGR00736 nifR3_rel_arch TIM-b 45.8 1.4E+02 0.003 26.9 8.3 73 131-210 145-217 (231)
473 PRK07028 bifunctional hexulose 45.6 91 0.002 29.9 7.6 72 131-210 115-187 (430)
474 PF01729 QRPTase_C: Quinolinat 45.5 55 0.0012 28.0 5.5 38 169-210 66-104 (169)
475 COG0820 Predicted Fe-S-cluster 45.0 54 0.0012 31.6 5.8 88 112-204 110-207 (349)
476 TIGR00364 exsB protein. This p 45.0 1.9E+02 0.0041 24.4 8.8 67 139-206 103-172 (201)
477 TIGR00262 trpA tryptophan synt 45.0 1.6E+02 0.0035 26.5 8.7 81 130-210 20-119 (256)
478 cd04722 TIM_phosphate_binding 44.7 1.1E+02 0.0023 24.2 6.8 65 143-210 132-196 (200)
479 PRK13533 7-cyano-7-deazaguanin 44.6 1.2E+02 0.0025 30.4 8.3 78 130-212 167-246 (487)
480 cd02069 methionine_synthase_B1 44.6 1.2E+02 0.0025 26.7 7.5 74 131-214 126-202 (213)
481 PRK03092 ribose-phosphate pyro 44.5 64 0.0014 30.0 6.2 43 167-210 215-257 (304)
482 cd03312 CIMS_N_terminal_like C 44.4 92 0.002 29.5 7.3 72 139-212 187-260 (360)
483 COG5014 Predicted Fe-S oxidore 44.3 82 0.0018 28.3 6.4 103 112-220 50-181 (228)
484 PLN02417 dihydrodipicolinate s 44.1 19 0.00042 32.5 2.7 92 130-225 18-123 (280)
485 cd08556 GDPD Glycerophosphodie 44.0 1.6E+02 0.0035 23.6 7.9 67 135-213 77-144 (189)
486 PRK05848 nicotinate-nucleotide 43.9 51 0.0011 30.4 5.3 41 167-211 166-207 (273)
487 PRK05581 ribulose-phosphate 3- 43.9 1.2E+02 0.0025 25.7 7.3 42 168-210 152-195 (220)
488 cd00429 RPE Ribulose-5-phospha 43.8 1.1E+02 0.0024 25.4 7.0 75 131-210 9-84 (211)
489 cd00952 CHBPH_aldolase Trans-o 43.7 1.4E+02 0.003 27.5 8.3 71 131-204 87-161 (309)
490 cd00954 NAL N-Acetylneuraminic 43.7 2.1E+02 0.0045 25.9 9.2 75 132-210 81-159 (288)
491 cd01571 NAPRTase_B Nicotinate 43.7 1.7E+02 0.0036 27.2 8.8 41 167-210 229-270 (302)
492 PRK07308 flavodoxin; Validated 43.6 75 0.0016 25.4 5.8 67 134-206 66-139 (146)
493 TIGR00737 nifR3_yhdG putative 43.6 61 0.0013 29.7 5.9 81 131-212 72-166 (319)
494 cd03412 CbiK_N Anaerobic cobal 43.5 90 0.0019 25.1 6.2 57 151-210 4-73 (127)
495 PRK07199 phosphoribosylpyropho 43.3 58 0.0013 30.2 5.7 43 167-210 225-267 (301)
496 cd07948 DRE_TIM_HCS Saccharomy 43.1 1.7E+02 0.0038 26.4 8.6 57 139-202 117-175 (262)
497 cd02940 DHPD_FMN Dihydropyrimi 43.0 1.7E+02 0.0036 26.7 8.6 79 131-210 177-278 (299)
498 cd02911 arch_FMN Archeal FMN-b 42.9 1.1E+02 0.0023 27.2 7.2 77 131-211 82-170 (233)
499 COG1180 PflA Pyruvate-formate 42.9 1.6E+02 0.0035 26.6 8.4 77 129-205 94-198 (260)
500 TIGR01501 MthylAspMutase methy 42.8 1.9E+02 0.0042 23.9 9.1 68 137-210 42-114 (134)
No 1
>PTZ00413 lipoate synthase; Provisional
Probab=100.00 E-value=5e-71 Score=517.78 Aligned_cols=204 Identities=53% Similarity=0.967 Sum_probs=190.4
Q ss_pred CCCCCCccccccccCCCCCCCCCCccceecCCCCc----cHHHHHHHHccCChHhhhhhcCCCCccceeCCC-CCCceee
Q 026651 30 VKMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQ----RFQEVKESLSSLKLNTVCEEAQCPNIGECWNGG-GDGIATA 104 (235)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~P~Wlk~~~~~~~----~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~-~~~~~ta 104 (235)
++...++.+.+||..... .+||+|||+++|.|+ +|.+++++|++++||||||||+||||+|||++| +.|.+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~--~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TVCeea~CPNi~EC~~~~~~~~~~tA 150 (398)
T PTZ00413 73 PEGLKPSAASIGPIKRGE--EPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVCEEAKCPNIGECWGGGDEEGTATA 150 (398)
T ss_pred ccccccccccCCCccCCC--CCCCcceeecCCCCccccchHHHHHHHHHhCCCceeeCCCCCCChHHHhCCCCCCCCcee
Confidence 456667778888887443 479999999999998 899999999999999999999999999999997 4588999
Q ss_pred eeeecCCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCce
Q 026651 105 TIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM 184 (235)
Q Consensus 105 T~mIlG~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ 184 (235)
||||||++|||||+|||||++..|.++|++||.++|++++++|++|+|||||+||||+|+|++||+++|++||+.+|++.
T Consensus 151 TfmilG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~ 230 (398)
T PTZ00413 151 TIMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELL 230 (398)
T ss_pred EeeecCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCe
Confidence 99999999999999999998665788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCHHHHHHHHhcCCCeeccCccccccccccccCCCCcccccC
Q 026651 185 VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGLVMQV 235 (235)
Q Consensus 185 ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rlfp~Vcdtth~Y~~s~ 235 (235)
||+|++||+|+++++++|++|||++|||||||||+|||+||+++|+|++++
T Consensus 231 IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sL 281 (398)
T PTZ00413 231 LEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSL 281 (398)
T ss_pred EEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHH
Confidence 999999999999999999999999999999999999999995479999874
No 2
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=100.00 E-value=5e-71 Score=498.71 Aligned_cols=182 Identities=55% Similarity=0.999 Sum_probs=177.8
Q ss_pred CCCCCCCccceecCCCCccHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCCCC
Q 026651 47 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR 126 (235)
Q Consensus 47 ~~~~~~P~Wlk~~~~~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt~~ 126 (235)
.+..+||+|||+++|.|.+|.++++++++++||||||||.||||+|||+.+ ||||||||+.|||.|+||++.+++
T Consensus 19 ~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~-----tATFmImG~~CTR~C~FC~V~~g~ 93 (306)
T COG0320 19 EELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCRFCDVKTGR 93 (306)
T ss_pred chhccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC-----ceEEeeccchhccCCCccccCCCC
Confidence 345689999999999999999999999999999999999999999999998 999999999999999999999988
Q ss_pred CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 127 ~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
|.++|++||.++|+++++|||+|+|||||+||||+|||+.||+++|++||+.+|.+.||+|+|||.|++++|+.|++||
T Consensus 94 -P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~ 172 (306)
T COG0320 94 -PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAG 172 (306)
T ss_pred -CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccCccccccccccccCCCCcccccC
Q 026651 207 LDVFAHNIETVKRLQRIVRDPRAGLVMQV 235 (235)
Q Consensus 207 ~d~ynHNLETs~rlfp~Vcdtth~Y~~s~ 235 (235)
||+||||||||+|+|+.|| ++++|++|+
T Consensus 173 pdV~nHNvETVprL~~~VR-p~A~Y~~SL 200 (306)
T COG0320 173 PDVFNHNVETVPRLYPRVR-PGATYERSL 200 (306)
T ss_pred cchhhcccccchhcccccC-CCCcHHHHH
Confidence 9999999999999999999 999999984
No 3
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.3e-69 Score=491.41 Aligned_cols=187 Identities=65% Similarity=1.184 Sum_probs=184.2
Q ss_pred CCCCCccceecCCCCccHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCCCCCC
Q 026651 49 DVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP 128 (235)
Q Consensus 49 ~~~~P~Wlk~~~~~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt~~~p 128 (235)
+.|+|.|||.++|.|++|++++..|++++||||||||+||||||||+|+++|.+|||||+|||+|||+|+||+++|++.|
T Consensus 57 ~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPNiGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~P 136 (360)
T KOG2672|consen 57 RLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPNIGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNP 136 (360)
T ss_pred cccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCchhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
+++|+.||.+.|++++.||+.|+|+|||+||||+|+|++|||++|+.||++.|++.||.|+|||.|+.+.+++++.+|+|
T Consensus 137 pPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLD 216 (360)
T KOG2672|consen 137 PPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLD 216 (360)
T ss_pred cCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCccccccccccccCCCCcccccC
Q 026651 209 VFAHNIETVKRLQRIVRDPRAGLVMQV 235 (235)
Q Consensus 209 ~ynHNLETs~rlfp~Vcdtth~Y~~s~ 235 (235)
||+||+|||+++.|-|||++++|+||+
T Consensus 217 V~AHNvETVe~Ltp~VRD~RA~yrQSL 243 (360)
T KOG2672|consen 217 VYAHNVETVEELTPFVRDPRANYRQSL 243 (360)
T ss_pred ceecchhhHHhcchhhcCcccchHHhH
Confidence 999999999999999999999999984
No 4
>PLN02428 lipoic acid synthase
Probab=100.00 E-value=3.8e-59 Score=433.85 Aligned_cols=188 Identities=76% Similarity=1.295 Sum_probs=180.5
Q ss_pred CCCCCCCccceecCCCCccHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCCCC
Q 026651 47 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR 126 (235)
Q Consensus 47 ~~~~~~P~Wlk~~~~~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt~~ 126 (235)
.+..+||+|||+++|.|++|.+++++|++++||||||||+||||+|||++|+||.+||||||||+.|+|+|+||+|+++.
T Consensus 46 ~~~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~ 125 (349)
T PLN02428 46 DKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSR 125 (349)
T ss_pred CCCCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCC
Confidence 46668999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 127 NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 127 ~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
.|..++++||.++|+++.++|++|+|||||+|||++|+++++|+++|++||+..|.+.|++|+|+|++++|.|++|++||
T Consensus 126 ~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG 205 (349)
T PLN02428 126 TPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSG 205 (349)
T ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccCccccccccccccCCCCccccc
Q 026651 207 LDVFAHNIETVKRLQRIVRDPRAGLVMQ 234 (235)
Q Consensus 207 ~d~ynHNLETs~rlfp~Vcdtth~Y~~s 234 (235)
+++|+||+|||+++|++||+++|+|+++
T Consensus 206 ~d~i~hnlETv~rL~~~Ir~~~~sye~~ 233 (349)
T PLN02428 206 LDVFAHNIETVERLQRIVRDPRAGYKQS 233 (349)
T ss_pred CCEEccCccCcHHHHHHhcCCCCCHHHH
Confidence 9999999999999999999668999986
No 5
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=100.00 E-value=1.8e-54 Score=395.46 Aligned_cols=187 Identities=47% Similarity=0.902 Sum_probs=177.1
Q ss_pred ccCCCCCCCCCCccceecCCCCccHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeeecCCCCCCCCCCcc
Q 026651 42 LHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCA 121 (235)
Q Consensus 42 ~~~~~~~~~~~P~Wlk~~~~~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCA 121 (235)
|.....+..+||+|||+++|.|+.|.+++++|++++||||||||+||||+|||+++ |||||++|+.|+++|+||+
T Consensus 7 ~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~-----tatfm~i~~gC~~~C~FC~ 81 (302)
T TIGR00510 7 PIPNKEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILGDICTRRCPFCD 81 (302)
T ss_pred CCcccCccCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC-----EEEEEecCcCcCCCCCcCC
Confidence 44455667789999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHH
Q 026651 122 VKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVET 201 (235)
Q Consensus 122 QSt~~~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~ 201 (235)
|++++.+...+++||.++|++++++|++++|+|||++||++|+|+++|+++|++|++..|++.|++|+|+|.++.+.++.
T Consensus 82 v~~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~ 161 (302)
T TIGR00510 82 VAHGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDI 161 (302)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHH
Confidence 99665466689999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHhcCCCeeccCccccccccccccCCCCccccc
Q 026651 202 LVHSGLDVFAHNIETVKRLQRIVRDPRAGLVMQ 234 (235)
Q Consensus 202 L~eAG~d~ynHNLETs~rlfp~Vcdtth~Y~~s 234 (235)
|++||+++|+|||||++++|+.|| ++++|+++
T Consensus 162 l~~aG~dv~~hnlEt~~~l~~~vr-r~~t~e~~ 193 (302)
T TIGR00510 162 LLDAPPDVYNHNLETVERLTPFVR-PGATYRWS 193 (302)
T ss_pred HHHcCchhhcccccchHHHHHHhC-CCCCHHHH
Confidence 999999999999999999999999 89999975
No 6
>PRK12928 lipoyl synthase; Provisional
Probab=100.00 E-value=1.5e-47 Score=347.52 Aligned_cols=187 Identities=44% Similarity=0.812 Sum_probs=177.1
Q ss_pred cccCCCCCCCCCCccceecCCCCccHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeeecCCCCCCCCCCc
Q 026651 41 GLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFC 120 (235)
Q Consensus 41 ~~~~~~~~~~~~P~Wlk~~~~~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIlG~~CtedC~FC 120 (235)
++...+.|..+||+|||+++|.|++|.+++.++++.+|||||++|+|||+++||+++ ++|||++|+.|+++|+||
T Consensus 3 ~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~-----~~tfv~is~gC~~~C~FC 77 (290)
T PRK12928 3 RDKSARIPVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMGSICTRRCAFC 77 (290)
T ss_pred ccccccCCCCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC-----EEEEEEecccccCcCCCC
Confidence 344556777899999999999999999999999999999999999999999999988 999999999999999999
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCC-CHHHH
Q 026651 121 AVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-DLRAV 199 (235)
Q Consensus 121 AQSt~~~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l-~~e~l 199 (235)
++++++ +..++++||+++|++++++|++++++|||.+||++|++++++++++++|++..|.+.|++++|++++ ..+.|
T Consensus 78 a~~~g~-~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L 156 (290)
T PRK12928 78 QVDKGR-PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERL 156 (290)
T ss_pred CccCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHH
Confidence 999755 6679999999999999999999999999999999999999999999999999999999999999988 89999
Q ss_pred HHHHhcCCCeeccCccccccccccccCCCCccccc
Q 026651 200 ETLVHSGLDVFAHNIETVKRLQRIVRDPRAGLVMQ 234 (235)
Q Consensus 200 ~~L~eAG~d~ynHNLETs~rlfp~Vcdtth~Y~~s 234 (235)
++|++||+++|+|||||++++|+.|+ ++++|+++
T Consensus 157 ~~l~~Ag~~i~~hnlEt~~~vl~~m~-r~~t~e~~ 190 (290)
T PRK12928 157 ATVLAAKPDVFNHNLETVPRLQKAVR-RGADYQRS 190 (290)
T ss_pred HHHHHcCchhhcccCcCcHHHHHHhC-CCCCHHHH
Confidence 99999999999999999999999999 89999875
No 7
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=1.9e-34 Score=260.97 Aligned_cols=178 Identities=54% Similarity=0.994 Sum_probs=167.5
Q ss_pred CCCCccceecCCCCccHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCCCCCCC
Q 026651 50 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPA 129 (235)
Q Consensus 50 ~~~P~Wlk~~~~~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt~~~p~ 129 (235)
.+||+|||+++|.|+.|++...++++.+|+|||++|+|||+.+||.++ ++||+++++.|+.+|.||+++..+ +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~-----~~~fi~is~GC~~~C~FC~i~~~r-~~ 78 (289)
T PRK05481 5 ARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCPFCDVATGR-PL 78 (289)
T ss_pred CCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCCC-----eEEEEEecccccCCCCCceeCCCC-CC
Confidence 359999999999999999999999999999999999999999999987 999999999999999999999654 44
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.++++++++.|+.+.+.|++.+++|||+.+|+++.+.+.|++.++.|++..|++.|+++.+++....+.+..|+++|+++
T Consensus 79 s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i 158 (289)
T PRK05481 79 PLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDV 158 (289)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcce
Confidence 68999999999999999999999999998888777889999999999998888999999999999999999999999999
Q ss_pred eccCccccccccccccCCCCccccc
Q 026651 210 FAHNIETVKRLQRIVRDPRAGLVMQ 234 (235)
Q Consensus 210 ynHNLETs~rlfp~Vcdtth~Y~~s 234 (235)
++||+||+++.|+.++ +.++|++.
T Consensus 159 ~~~~~ets~~vlk~m~-r~~t~e~~ 182 (289)
T PRK05481 159 FNHNLETVPRLYKRVR-PGADYERS 182 (289)
T ss_pred eeccccChHHHHHHhC-CCCCHHHH
Confidence 9999999999999999 89998863
No 8
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.97 E-value=3.2e-32 Score=252.41 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=137.1
Q ss_pred ccHHHHHHHHccCChH-hhhhhcCCCCccceeCCCCCCceeeeeeec---CCCCCCCCCCcccCCCC-CC----CCCCch
Q 026651 64 QRFQEVKESLSSLKLN-TVCEEAQCPNIGECWNGGGDGIATATIMLL---GDTCTRGCRFCAVKTSR-NP----APPDPM 134 (235)
Q Consensus 64 ~~~~~~~~~l~~~~L~-TVCeeA~CPNi~ec~~~~~~~~~taT~mIl---G~~CtedC~FCAQSt~~-~p----~~ld~e 134 (235)
-...++..++...... .+++.|. .+++.|.++ .+-.++|| ++.|+|||+||+||.++ ++ .++++|
T Consensus 14 ~~~~e~~~l~~~~~~~~~L~~aA~--~~R~~~~g~----~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~e 87 (335)
T COG0502 14 WTLDEALALLDLPDEDELLFEAAQ--KHRLHFDGN----EVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVE 87 (335)
T ss_pred cCHHHHHHHHcCCcchHHHHHHHH--HHHHhcCCC----eEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHH
Confidence 3456777777655555 7999999 999999987 56666666 56699999999999533 12 268999
Q ss_pred hHHHHHHHHHHcC-CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 135 EPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 135 E~~~~A~aa~~~G-l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
|+++.|+++++.| .+||+++||++ .+.+++++.+.|+.||+.. .+|+|+++|.++.||+++|++||+++||||
T Consensus 88 eIle~Ak~ak~~Ga~r~c~~aagr~---~~~~~~~i~~~v~~Vk~~~---~le~c~slG~l~~eq~~~L~~aGvd~ynhN 161 (335)
T COG0502 88 EILEAAKKAKAAGATRFCMGAAGRG---PGRDMEEVVEAIKAVKEEL---GLEVCASLGMLTEEQAEKLADAGVDRYNHN 161 (335)
T ss_pred HHHHHHHHHHHcCCceEEEEEeccC---CCccHHHHHHHHHHHHHhc---CcHHhhccCCCCHHHHHHHHHcChhheecc
Confidence 9999999999999 57999999975 4578999999999999754 699999999999999999999999999999
Q ss_pred ccccccccccccCCCCcccccC
Q 026651 214 IETVKRLQRIVRDPRAGLVMQV 235 (235)
Q Consensus 214 LETs~rlfp~Vcdtth~Y~~s~ 235 (235)
|||+++||++|| |||+|++++
T Consensus 162 LeTs~~~y~~I~-tt~t~edR~ 182 (335)
T COG0502 162 LETSPEFYENII-TTRTYEDRL 182 (335)
T ss_pred cccCHHHHcccC-CCCCHHHHH
Confidence 999999999999 999999863
No 9
>PRK08508 biotin synthase; Provisional
Probab=99.92 E-value=1.2e-24 Score=195.56 Aligned_cols=127 Identities=18% Similarity=0.256 Sum_probs=111.1
Q ss_pred eeeeeec---CCCCCCCCCCcccCCCC-C--C--CCCCchhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHH
Q 026651 103 TATIMLL---GDTCTRGCRFCAVKTSR-N--P--APPDPMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTV 173 (235)
Q Consensus 103 taT~mIl---G~~CtedC~FCAQSt~~-~--p--~~ld~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~I 173 (235)
+..|.|+ ++.|++||+||+|+... . + ..+++||+++.|+.+++.|++ +++||||.+ +++.+++++.+++
T Consensus 4 ~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~--~~~~~~e~~~ei~ 81 (279)
T PRK08508 4 IFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG--LDDKKLEYVAEAA 81 (279)
T ss_pred EEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC--CCcccHHHHHHHH
Confidence 5556666 88999999999998422 1 1 247999999999999999985 889999987 5677899999999
Q ss_pred HHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccccccccccCCCCccccc
Q 026651 174 KAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGLVMQ 234 (235)
Q Consensus 174 r~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rlfp~Vcdtth~Y~~s 234 (235)
+.||+..| .+.++++.|.+++|++++|++||+++|||||||+++|||++| ++|+|++.
T Consensus 82 ~~ik~~~p--~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~~~~~ 139 (279)
T PRK08508 82 KAVKKEVP--GLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHTWEER 139 (279)
T ss_pred HHHHhhCC--CcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCCHHHH
Confidence 99998877 457788999999999999999999999999999999999999 89999874
No 10
>PLN02389 biotin synthase
Probab=99.91 E-value=4.5e-24 Score=200.53 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=132.8
Q ss_pred ccHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeeec---CCCCCCCCCCcccCCCC-C--C--CCCCchh
Q 026651 64 QRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL---GDTCTRGCRFCAVKTSR-N--P--APPDPME 135 (235)
Q Consensus 64 ~~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIl---G~~CtedC~FCAQSt~~-~--p--~~ld~eE 135 (235)
-..++...++. ..|..++..|+ .+++.+.+| ..+-.+.|+ ++.|++||+||+|+... . + ..+++||
T Consensus 47 lt~~e~l~L~~-~~l~~l~~~A~--~vr~~~~~~---~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~Ee 120 (379)
T PLN02389 47 WTRDEIKEVYD-SPLLDLLFHGA--QVHRHAHDP---REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDD 120 (379)
T ss_pred CCHHHHHHHHc-CcHHHHHHHHH--HHHHHhcCC---CEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHH
Confidence 34778888884 48999999999 999866533 135555555 89999999999999432 1 1 2589999
Q ss_pred HHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCc
Q 026651 136 PENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNL 214 (235)
+++.|+.+++.|++ +++|||++...-++..++.+.++|+.||+. .+++|++.|.+++|++++|++||+++|||||
T Consensus 121 Il~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~----~l~i~~s~G~l~~E~l~~LkeAGld~~~~~L 196 (379)
T PLN02389 121 VLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM----GMEVCCTLGMLEKEQAAQLKEAGLTAYNHNL 196 (379)
T ss_pred HHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC----CcEEEECCCCCCHHHHHHHHHcCCCEEEeee
Confidence 99999999999997 799999875432345799999999999853 4688999999999999999999999999999
Q ss_pred cccccccccccCCCCccccc
Q 026651 215 ETVKRLQRIVRDPRAGLVMQ 234 (235)
Q Consensus 215 ETs~rlfp~Vcdtth~Y~~s 234 (235)
||++++|++|+ ++|+|++.
T Consensus 197 eTs~~~y~~i~-~~~s~e~r 215 (379)
T PLN02389 197 DTSREYYPNVI-TTRSYDDR 215 (379)
T ss_pred cCChHHhCCcC-CCCCHHHH
Confidence 99999999999 89999874
No 11
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=99.91 E-value=2.1e-24 Score=195.67 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=122.9
Q ss_pred HHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeee---ecCCCCCCCCCCcccCCCCCCC------CCCchhHH
Q 026651 67 QEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM---LLGDTCTRGCRFCAVKTSRNPA------PPDPMEPE 137 (235)
Q Consensus 67 ~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~m---IlG~~CtedC~FCAQSt~~~p~------~ld~eE~~ 137 (235)
.+++++. +..|-.+--.|. -+...|..- ..+--|. |..|.|+|||+||+|| +++.+ ++..||++
T Consensus 51 ~eik~iY-dtPLldL~f~aa--~~HRk~Hdp---~kVQqCTLlsIKtGGCsEDCkYCaQS-SRy~TGvKA~klmk~DeVi 123 (380)
T KOG2900|consen 51 SEIKEIY-DTPLLDLTFAAA--LQHRKWHDP---TKVQQCTLLSIKTGGCSEDCKYCAQS-SRYDTGVKAEKLMKVDEVI 123 (380)
T ss_pred HHHHHHh-cchHHHHHHHHH--HHHhhhCCc---cceeeeEEEEeecCCcccccchhhhh-cccccchhHHHHhhHHHHH
Confidence 4566776 555555555555 577778764 2333333 4499999999999999 33332 68889999
Q ss_pred HHHHHHHHcCC-cEEEEEeecCCCCC--CCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCc
Q 026651 138 NTAKAIASWGV-DYIVLTSVDRDDIP--DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (235)
Q Consensus 138 ~~A~aa~~~Gl-~y~VVTSg~RddL~--D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNL 214 (235)
+.|+.|++.|. +||+-..+|- +. ..-+.+|.+.|++|+. ..+|+|+.+|+++++|++.|++||++.|||||
T Consensus 124 ~~Ak~AK~~GSTRFCmGaAWRD--~~GRk~~fk~IlE~ikevr~----MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNl 197 (380)
T KOG2900|consen 124 KEAKEAKRNGSTRFCMGAAWRD--MKGRKSAFKRILEMIKEVRD----MGMEVCVTLGMVDQQQAKELKDAGLTAYNHNL 197 (380)
T ss_pred HHHHHHHhcCCceeecchhhhh--hccchhHHHHHHHHHHHHHc----CCceeeeeeccccHHHHHHHHhccceecccCc
Confidence 99999999996 6999998853 43 3357777777777764 57999999999999999999999999999999
Q ss_pred cccccccccccCCCCcccccC
Q 026651 215 ETVKRLQRIVRDPRAGLVMQV 235 (235)
Q Consensus 215 ETs~rlfp~Vcdtth~Y~~s~ 235 (235)
+|+|.||++|- +|.+||+++
T Consensus 198 DTSREyYskvI-tTRtYDdRL 217 (380)
T KOG2900|consen 198 DTSREYYSKVI-TTRTYDDRL 217 (380)
T ss_pred cchhhhhcccc-eecchHHHH
Confidence 99999999999 999999863
No 12
>PRK15108 biotin synthase; Provisional
Probab=99.90 E-value=1.6e-23 Score=194.03 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=126.9
Q ss_pred HHHHHHHHccCChHhhhhhcCCCCcc-ceeCCCCCCceeeeeeec---CCCCCCCCCCcccCCCC-C--C--CCCCchhH
Q 026651 66 FQEVKESLSSLKLNTVCEEAQCPNIG-ECWNGGGDGIATATIMLL---GDTCTRGCRFCAVKTSR-N--P--APPDPMEP 136 (235)
Q Consensus 66 ~~~~~~~l~~~~L~TVCeeA~CPNi~-ec~~~~~~~~~taT~mIl---G~~CtedC~FCAQSt~~-~--p--~~ld~eE~ 136 (235)
.++...++ +.+|..++..|+ .++ +.|+++ .+-.+.|+ ++.|++||+||+|+... . + ..+++||+
T Consensus 9 ~~e~~~l~-~~~l~~l~~~A~--~ir~~~fg~~----~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI 81 (345)
T PRK15108 9 LSQVTELF-EKPLLELLFEAQ--QVHRQHFDPR----QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQV 81 (345)
T ss_pred HHHHHHHH-cccHHHHHHHHH--HHHHHhcCCC----EEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHH
Confidence 45566677 448999999999 884 445433 23333333 99999999999999422 1 1 25899999
Q ss_pred HHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcc
Q 026651 137 ENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (235)
Q Consensus 137 ~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLE 215 (235)
++.|+.+++.|++ +++++|+.. +++.+++.+.++|+.||+. .++++++.|.++++++++|++||+|+||||||
T Consensus 82 ~~~a~~~~~~G~~~i~i~~~g~~--p~~~~~e~i~~~i~~ik~~----~i~v~~s~G~ls~e~l~~LkeAGld~~n~~le 155 (345)
T PRK15108 82 LESARKAKAAGSTRFCMGAAWKN--PHERDMPYLEQMVQGVKAM----GLETCMTLGTLSESQAQRLANAGLDYYNHNLD 155 (345)
T ss_pred HHHHHHHHHcCCCEEEEEecCCC--CCcchHHHHHHHHHHHHhC----CCEEEEeCCcCCHHHHHHHHHcCCCEEeeccc
Confidence 9999999999997 788888853 5677899999999999963 46788999999999999999999999999999
Q ss_pred ccccccccccCCCCccccc
Q 026651 216 TVKRLQRIVRDPRAGLVMQ 234 (235)
Q Consensus 216 Ts~rlfp~Vcdtth~Y~~s 234 (235)
|+|++|++|+ ++|+|++.
T Consensus 156 T~p~~f~~I~-~~~~~~~r 173 (345)
T PRK15108 156 TSPEFYGNII-TTRTYQER 173 (345)
T ss_pred cChHhcCCCC-CCCCHHHH
Confidence 9999999999 89999875
No 13
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.87 E-value=5.8e-22 Score=184.87 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=128.8
Q ss_pred HHHHHHHHcc---CChHhhhhhcCCCCccceeCCCCCCceeeeeeec--CCCCCCCCCCcccCCCCC--CCCCCchhHHH
Q 026651 66 FQEVKESLSS---LKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL--GDTCTRGCRFCAVKTSRN--PAPPDPMEPEN 138 (235)
Q Consensus 66 ~~~~~~~l~~---~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIl--G~~CtedC~FCAQSt~~~--p~~ld~eE~~~ 138 (235)
..+...++.. ..|..+++.|+ .+++-+.|+ .+..+.++ ++.|+++|.||+|+.... ...++++|+++
T Consensus 38 ~ee~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G~----~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~ 111 (371)
T PRK09240 38 LEDLMALLSPAAEPYLEEMAQKAQ--RLTRQRFGN----TISLYTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIER 111 (371)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHH--HHHHHHcCC----EEEEEeceEEcccccCcCCcCCCCCCCCCccccCCHHHHHH
Confidence 5566677753 34888999999 999888876 34436666 999999999999994321 24789999999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccc-c
Q 026651 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET-V 217 (235)
Q Consensus 139 ~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLET-s 217 (235)
.|+.+.+.|++.+.+++|.. +...+++++++++++||+..|++.|++ |.++.++++.|++||+++||||+|| .
T Consensus 112 ~a~~~~~~Gv~~i~lvgGe~--p~~~~~e~l~~~i~~Ik~~~p~i~i~~----g~lt~e~l~~Lk~aGv~r~~i~lET~~ 185 (371)
T PRK09240 112 EMAAIKKLGFEHILLLTGEH--EAKVGVDYIRRALPIAREYFSSVSIEV----QPLSEEEYAELVELGLDGVTVYQETYN 185 (371)
T ss_pred HHHHHHhCCCCEEEEeeCCC--CCCCCHHHHHHHHHHHHHhCCCceecc----CCCCHHHHHHHHHcCCCEEEEEEecCC
Confidence 99999999998665555765 556789999999999999888766654 5689999999999999999999999 5
Q ss_pred cccccccc--CCCCccccc
Q 026651 218 KRLQRIVR--DPRAGLVMQ 234 (235)
Q Consensus 218 ~rlfp~Vc--dtth~Y~~s 234 (235)
+++|++|+ .++|+|+++
T Consensus 186 ~~~~~~i~~~g~~h~~~~r 204 (371)
T PRK09240 186 PATYAKHHLRGPKRDFEYR 204 (371)
T ss_pred HHHHHHhCcCCCCCCHHHH
Confidence 99999998 238999875
No 14
>PRK06256 biotin synthase; Validated
Probab=99.86 E-value=2.4e-21 Score=176.34 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=131.5
Q ss_pred ccHHHHHHHHc--cCChHhhhhhcCCCCccceeCCCCCCceeeeeee---cCCCCCCCCCCcccCCCC-CC----CCCCc
Q 026651 64 QRFQEVKESLS--SLKLNTVCEEAQCPNIGECWNGGGDGIATATIML---LGDTCTRGCRFCAVKTSR-NP----APPDP 133 (235)
Q Consensus 64 ~~~~~~~~~l~--~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mI---lG~~CtedC~FCAQSt~~-~p----~~ld~ 133 (235)
-...+...+++ +..|..+++.|+ .+++.|.++ .+..+.| .++.|+++|+||+|+... .+ ..+++
T Consensus 20 ~~~~e~~~ll~~~~~~~~~L~~~A~--~~r~~~~g~----~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~ 93 (336)
T PRK06256 20 LTKEEALALLEIPDDDLLELLAAAY--EVRKHFCGK----KVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDI 93 (336)
T ss_pred CCHHHHHHHHcCChHHHHHHHHHHH--HHHHHhCCC----eEEEEEeeeccCCCCCCCCccCCCcCCCCCCCceecCCCH
Confidence 34667777776 456899999999 999998875 2322233 389999999999999532 11 25899
Q ss_pred hhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 134 MEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
+|+++.++.+.+.|+. ++++++|.. +.+.+++.+.+.++.|++. + .++++++.|.+++|.+++|++||+++|+|
T Consensus 94 eeI~~~~~~~~~~g~~~~~l~~~g~~--p~~~~~~~~~e~i~~i~~~-~--~i~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 94 EELIEAAKEAIEEGAGTFCIVASGRG--PSGKEVDQVVEAVKAIKEE-T--DLEICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecCCC--CCchHHHHHHHHHHHHHhc-C--CCcEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 9999999999999985 788899975 4455688999999999976 4 56889999999999999999999999999
Q ss_pred CccccccccccccCCCCccccc
Q 026651 213 NIETVKRLQRIVRDPRAGLVMQ 234 (235)
Q Consensus 213 NLETs~rlfp~Vcdtth~Y~~s 234 (235)
|+||++++|++|| ++|+|++.
T Consensus 169 ~lEts~~~~~~i~-~~~t~~~~ 189 (336)
T PRK06256 169 NLETSRSYFPNVV-TTHTYEDR 189 (336)
T ss_pred CCccCHHHHhhcC-CCCCHHHH
Confidence 9999999999999 89999864
No 15
>PRK05927 hypothetical protein; Provisional
Probab=99.85 E-value=1.4e-21 Score=181.97 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=134.4
Q ss_pred CCCccHHHHHHHHccCChHhhhhhcCCCCccceeC-CCCCCceeeeee----ec-CCCCCCCCCCcccCCCC-CC--CCC
Q 026651 61 PQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWN-GGGDGIATATIM----LL-GDTCTRGCRFCAVKTSR-NP--APP 131 (235)
Q Consensus 61 ~~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~-~~~~~~~taT~m----Il-G~~CtedC~FCAQSt~~-~p--~~l 131 (235)
|..-..++...+++...|..+++.|+ .+++-+. |+ ..+|. |- ++.|++||+||+|+... .+ ..+
T Consensus 4 ~~~is~ee~l~L~~~~~l~~L~~~A~--~iR~~~~~G~-----~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~l 76 (350)
T PRK05927 4 PARISFQEGLELFLYSPLEELQEHAD--SLRKQRYPQN-----TVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLL 76 (350)
T ss_pred ccCCCHHHHHHHhcCCCHHHHHHHHH--HHHHHHcCCC-----eEEEEcccCCccchhhhcCCccCCccCCCCCcccccc
Confidence 44445677778887788999999999 9998886 55 56655 22 99999999999999422 12 268
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceE---------EEeecCCCCCHHHHHHH
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV---------ECLTSDFRGDLRAVETL 202 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~i---------evl~sdg~l~~e~l~~L 202 (235)
+++|+++.|+.+++.|++.++++||..+ +.+++.+++.|+.||+..|++.+ .++.+.|+.++|++++|
T Consensus 77 s~eei~~~a~~~~~~G~~~i~i~gG~~p---~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~L 153 (350)
T PRK05927 77 SFDEFRSLMQRYVSAGVKTVLLQGGVHP---QLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERL 153 (350)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCC---CCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999987667899863 47899999999999999886643 34678899999999999
Q ss_pred HhcCCCeecc-CccccccccccccCCCCcc
Q 026651 203 VHSGLDVFAH-NIETVKRLQRIVRDPRAGL 231 (235)
Q Consensus 203 ~eAG~d~ynH-NLETs~rlfp~Vcdtth~Y 231 (235)
++||++.|+| |+||+.++|++++ ++|+|
T Consensus 154 k~aGl~~l~g~~~Et~~~~~~~~~-~p~k~ 182 (350)
T PRK05927 154 WDAGQRTIPGGGAEILSERVRKII-SPKKM 182 (350)
T ss_pred HHcCcccCCCCCchhCCHHHhhcc-CCCCC
Confidence 9999999999 9999999999999 78886
No 16
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.85 E-value=4.8e-21 Score=178.23 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=130.3
Q ss_pred cHHHHHHHHccC---ChHhhhhhcCCCCccceeCCCCCCceeeeeeec--CCCCCCCCCCcccCCCC-C-CCCCCchhHH
Q 026651 65 RFQEVKESLSSL---KLNTVCEEAQCPNIGECWNGGGDGIATATIMLL--GDTCTRGCRFCAVKTSR-N-PAPPDPMEPE 137 (235)
Q Consensus 65 ~~~~~~~~l~~~---~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIl--G~~CtedC~FCAQSt~~-~-p~~ld~eE~~ 137 (235)
...+...++... .|..+++.|+ .+++-+.|+ .+..+.++ ++.|+++|+||+|+... . ...+++||+.
T Consensus 36 s~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G~----~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~ 109 (366)
T TIGR02351 36 SLEDFLALLSPAAEPYLEEMAQKAK--KLTRKRFGN----TISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIE 109 (366)
T ss_pred CHHHHHHHhCCCchHHHHHHHHHHH--HHHHHHcCC----EEEEEeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHH
Confidence 355666677543 4888999999 899888776 34446666 99999999999999532 1 2468999999
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs 217 (235)
+.|+.+++.|++.+.+++|.. ++..+++.++++++.||+..|.+.|+++ .++.+++++|++||+++||||+||.
T Consensus 110 ~~a~~~~~~Gv~~i~lvgGe~--p~~~~~e~l~eii~~Ik~~~p~i~Iei~----~lt~e~~~~Lk~aGv~r~~i~lET~ 183 (366)
T TIGR02351 110 REIEAIKKSGFKEILLVTGES--EKAAGVEYIAEAIKLAREYFSSLAIEVQ----PLNEEEYKKLVEAGLDGVTVYQETY 183 (366)
T ss_pred HHHHHHHhCCCCEEEEeeCCC--CCCCCHHHHHHHHHHHHHhCCccccccc----cCCHHHHHHHHHcCCCEEEEEeecC
Confidence 999999999998666667765 4556799999999999998888888875 4799999999999999999999998
Q ss_pred -cccccccc--CCCCccccc
Q 026651 218 -KRLQRIVR--DPRAGLVMQ 234 (235)
Q Consensus 218 -~rlfp~Vc--dtth~Y~~s 234 (235)
+++|++|+ +++|+|++.
T Consensus 184 ~~~~y~~i~~~g~~h~~~~r 203 (366)
T TIGR02351 184 NEKKYKKHHLAGKKKDFRYR 203 (366)
T ss_pred CHHHHHhcCcCCCCCCHHHH
Confidence 99999987 368999875
No 17
>PRK08444 hypothetical protein; Provisional
Probab=99.82 E-value=4.1e-20 Score=172.36 Aligned_cols=154 Identities=17% Similarity=0.228 Sum_probs=126.9
Q ss_pred cHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeee---ec--CCCCCCCCCCcccCCCC-CC--CCCCchhH
Q 026651 65 RFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM---LL--GDTCTRGCRFCAVKTSR-NP--APPDPMEP 136 (235)
Q Consensus 65 ~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~m---Il--G~~CtedC~FCAQSt~~-~p--~~ld~eE~ 136 (235)
..++...++ +.+|..++..|+ .+++-+.|+ +.||- ++ ++.|++||+||||+... .+ ..+++||+
T Consensus 14 s~eeal~Ll-~~dl~~L~~~A~--~vR~~~~G~-----~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI 85 (353)
T PRK08444 14 NQEEAVKLY-DLDLFTLGKYAD--KKRTKLHGK-----KVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEEI 85 (353)
T ss_pred CHHHHHHHh-hcCHHHHHHHHH--HHHHHhcCC-----EEEEEecCCcccccccccCCccCCCccCCCCCccccCCHHHH
Confidence 355666677 458999999999 999999887 66665 23 99999999999999422 12 25899999
Q ss_pred HHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEee-----------cCCCCCHHHHHHHHh
Q 026651 137 ENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT-----------SDFRGDLRAVETLVH 204 (235)
Q Consensus 137 ~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~-----------sdg~l~~e~l~~L~e 204 (235)
++.|+.+++.|++ +++| ||-+. +.+++.+.++|+.||+..|++ .+++ +.|+..+|++++|++
T Consensus 86 ~~~a~~a~~~G~~ei~iv-~G~~p---~~~~e~y~e~ir~Ik~~~p~i--~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lke 159 (353)
T PRK08444 86 LEIVKNSVKRGIKEVHIV-SAHNP---NYGYEWYLEIFKKIKEAYPNL--HVKAMTAAEVDFLSRKFGKSYEEVLEDMLE 159 (353)
T ss_pred HHHHHHHHHCCCCEEEEe-ccCCC---CCCHHHHHHHHHHHHHHCCCc--eEeeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999998 5555 44442 336999999999999998855 5566 889999999999999
Q ss_pred cCCCeeccC-ccc-cccccccccCCCCcccc
Q 026651 205 SGLDVFAHN-IET-VKRLQRIVRDPRAGLVM 233 (235)
Q Consensus 205 AG~d~ynHN-LET-s~rlfp~Vcdtth~Y~~ 233 (235)
||+++|+|+ .|+ ++++|++|| |+|.|.+
T Consensus 160 AGl~~~~g~~aEi~~~~vr~~I~-p~k~~~~ 189 (353)
T PRK08444 160 YGVDSMPGGGAEIFDEEVRKKIC-KGKVSSE 189 (353)
T ss_pred hCcccCCCCCchhcCHHHHhhhC-CCCCCHH
Confidence 999999994 888 788899999 9999965
No 18
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.82 E-value=4.2e-20 Score=170.74 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=131.3
Q ss_pred cHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeee---ec--CCCCCCCCCCcccCCCC-CC--CCCCchhH
Q 026651 65 RFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM---LL--GDTCTRGCRFCAVKTSR-NP--APPDPMEP 136 (235)
Q Consensus 65 ~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~m---Il--G~~CtedC~FCAQSt~~-~p--~~ld~eE~ 136 (235)
...+...+++...|..+++.|+ .+++.+.|+ ..||- ++ ++.|+++|+||+|+... .+ ..+++||+
T Consensus 12 s~~e~~~L~~~~~~~~L~~~A~--~vr~~~~g~-----~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI 84 (351)
T TIGR03700 12 SFEDGLFLYASDDLLTLGELAA--LVRERKHGD-----KVYFNVNRHLNYTNICVNGCAFCAFQRERGEPGAYAMSLEEI 84 (351)
T ss_pred CHHHHHHHcCCCcHHHHHHHHH--HHHHHhcCC-----eEEEeccCCcccccccccCCccCceeCCCCCcccCCCCHHHH
Confidence 3567777887788999999999 999988876 55553 33 99999999999999422 12 13799999
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEee---------cCCCCCHHHHHHHHhcCC
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT---------SDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~---------sdg~l~~e~l~~L~eAG~ 207 (235)
++.|+.++++|++.+.++||.++ +.+++++++.++.||+..|++.+..++ +.|..++|++++|++||+
T Consensus 85 ~~~a~~~~~~G~~~v~l~~G~~p---~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGl 161 (351)
T TIGR03700 85 VARVKEAYAPGATEVHIVGGLHP---NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGL 161 (351)
T ss_pred HHHHHHHHHCCCcEEEEecCCCC---CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 99999999999998778899774 345899999999999999988887765 478889999999999999
Q ss_pred Ceecc-Cccc-cccccccccCCCCccc
Q 026651 208 DVFAH-NIET-VKRLQRIVRDPRAGLV 232 (235)
Q Consensus 208 d~ynH-NLET-s~rlfp~Vcdtth~Y~ 232 (235)
++|+| ++|| ++++|++|| ++|.+.
T Consensus 162 d~~~~~g~E~~~~~v~~~i~-~~~~~~ 187 (351)
T TIGR03700 162 DSMPGGGAEIFAEEVRQQIC-PEKISA 187 (351)
T ss_pred CcCCCCcccccCHHHHhhcC-CCCCCH
Confidence 99999 5999 699999999 887664
No 19
>PRK08445 hypothetical protein; Provisional
Probab=99.80 E-value=2.7e-19 Score=166.10 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=126.4
Q ss_pred HHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeee---c--CCCCCCCCCCcccCCCC-CC--CCCCchhHH
Q 026651 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIML---L--GDTCTRGCRFCAVKTSR-NP--APPDPMEPE 137 (235)
Q Consensus 66 ~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mI---l--G~~CtedC~FCAQSt~~-~p--~~ld~eE~~ 137 (235)
.++...++.+..|..+++.|+ .+++.+.++ .+.||.| + ++.|+++|+||+|+... .+ ..+++||+.
T Consensus 6 ~~e~l~Ll~~~~l~~L~~~A~--~vr~~~~g~----~v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~ 79 (348)
T PRK08445 6 KEEALDLIKNAPLKELGEMAL--ERKQELHPE----KITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEID 79 (348)
T ss_pred HHHHHHHhcCCCHHHHHHHHH--HHHHHHcCC----cEEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHH
Confidence 456667787888999999999 999888755 3788877 4 89999999999999532 22 257999999
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEE--------eecCCCCC-HHHHHHHHhcCCC
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC--------LTSDFRGD-LRAVETLVHSGLD 208 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~iev--------l~sdg~l~-~e~l~~L~eAG~d 208 (235)
+.|+.+++.|.+.+++.+|. .++.+.+.+.+.++.||+..|++.+.. +++.+.++ +|++++|++||++
T Consensus 80 ~~~~~a~~~g~~~i~~~gg~---~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~ 156 (348)
T PRK08445 80 KKIEELLAIGGTQILFQGGV---HPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLS 156 (348)
T ss_pred HHHHHHHHcCCCEEEEecCC---CCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 99999999998855444433 456779999999999999999766543 23434444 8999999999999
Q ss_pred eeccC-cc-----ccccccccccCCCCcccc
Q 026651 209 VFAHN-IE-----TVKRLQRIVRDPRAGLVM 233 (235)
Q Consensus 209 ~ynHN-LE-----Ts~rlfp~Vcdtth~Y~~ 233 (235)
+|+|| +| +.++++|+++ ++|+|.+
T Consensus 157 ~~~g~glE~~~d~v~~~~~pk~~-t~~~~i~ 186 (348)
T PRK08445 157 SIPGAGAEILSDRVRDIIAPKKL-DSDRWLE 186 (348)
T ss_pred CCCCCceeeCCHHHHHhhCCCCC-CHHHHHH
Confidence 99995 99 7778889999 8998754
No 20
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.75 E-value=5.7e-18 Score=163.49 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=128.5
Q ss_pred CccHHHHHHHHccC---ChHhhhhhcCCCCccceeCCCCCCceeeeeeec--CCCCCCCCCCcccCCCCCC---CCCCch
Q 026651 63 GQRFQEVKESLSSL---KLNTVCEEAQCPNIGECWNGGGDGIATATIMLL--GDTCTRGCRFCAVKTSRNP---APPDPM 134 (235)
Q Consensus 63 ~~~~~~~~~~l~~~---~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIl--G~~CtedC~FCAQSt~~~p---~~ld~e 134 (235)
+-...+...+|... .|..+.+.|+ .+.+-+.|+ .+.+|.++ ++.|+++|.||+|+.+... ..+++|
T Consensus 45 ~Ls~eEal~LL~~~~~~~le~L~~~A~--~ir~~~~Gn----~I~lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~E 118 (469)
T PRK09613 45 GLSPEEAAVLLNVEDPELLEEIFEAAR--EIKEKIYGN----RIVLFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQE 118 (469)
T ss_pred CCCHHHHHHHHcCCChhHHHHHHHHHH--HHHHHHcCC----EEEEEEeccccCCCCCCCccCCCccCCCCCCceECCHH
Confidence 34566777777643 4788999999 999888776 46888887 9999999999999953321 368999
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCce--EEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~--ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
|+.+.|++++++|++...+.||.. +++.+++.++++|+.|++..++.. .++.+..|.++.|++++|++||+++|+|
T Consensus 119 EI~~ea~~~~~~G~~~i~LvsGe~--p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv~~~~l 196 (469)
T PRK09613 119 EIREEVKALEDMGHKRLALVAGED--PPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGIGTYQL 196 (469)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCC--CCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCCCEEEe
Confidence 999999999999998544457765 677889999999999997432111 2566677889999999999999999999
Q ss_pred Cccc-cccccccc---cCCCCccccc
Q 026651 213 NIET-VKRLQRIV---RDPRAGLVMQ 234 (235)
Q Consensus 213 NLET-s~rlfp~V---cdtth~Y~~s 234 (235)
|.|| -+..|+++ . ++|+|+++
T Consensus 197 ~qETY~~ety~~~hp~g-~k~~y~~R 221 (469)
T PRK09613 197 FQETYHKPTYEKMHPSG-PKSDYDWR 221 (469)
T ss_pred ccccCCHHHHHhcCCCC-CCCCHHHH
Confidence 9999 34444443 3 68999875
No 21
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.75 E-value=5.1e-18 Score=158.32 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=122.8
Q ss_pred cHHHHHHHHccCC---hHhhhhhcCCCCccceeCCCCCCceeeeeee---c--CCCCCCCCCCcccCCCCCC---CCCCc
Q 026651 65 RFQEVKESLSSLK---LNTVCEEAQCPNIGECWNGGGDGIATATIML---L--GDTCTRGCRFCAVKTSRNP---APPDP 133 (235)
Q Consensus 65 ~~~~~~~~l~~~~---L~TVCeeA~CPNi~ec~~~~~~~~~taT~mI---l--G~~CtedC~FCAQSt~~~p---~~ld~ 133 (235)
...+...++.... |..+.+.|+ .+++-+.|+ ..+|.+ + ++.|++||+||+|+.+... ..+++
T Consensus 21 s~~e~~~Ll~~~~~~~l~~L~~~A~--~ir~~~~G~-----~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~ 93 (371)
T PRK07360 21 SKEDALELLETTEPRRIFEILELAD--RLRKEQVGD-----TVTYVVNRNINFTNICEGHCGFCAFRRDEGDHGAFWLTI 93 (371)
T ss_pred CHHHHHHHhcCCChHHHHHHHHHHH--HHHHHhcCC-----eEEEEeccCcccchhhhcCCccCCcccCCCCCCCeeCCH
Confidence 4667777876544 899999999 999988887 566532 2 8999999999999954211 25899
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEee---------cCCCCCHHHHHHHHh
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT---------SDFRGDLRAVETLVH 204 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~---------sdg~l~~e~l~~L~e 204 (235)
||+.+.|+.++++|++.+.++||.. +...+++.+++.|++||+..|++.+..+. +.|+.++|++++|++
T Consensus 94 eeI~~~a~~a~~~G~~~i~l~~G~~--p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~Lke 171 (371)
T PRK07360 94 AEILEKAAEAVKRGATEVCIQGGLH--PAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKD 171 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCC--CCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 9999999999999999777779976 33446999999999999988865554433 579999999999999
Q ss_pred cCCCeeccCccccccc---------cccccCCCCccc
Q 026651 205 SGLDVFAHNIETVKRL---------QRIVRDPRAGLV 232 (235)
Q Consensus 205 AG~d~ynHNLETs~rl---------fp~Vcdtth~Y~ 232 (235)
||+++|| ||+.++ +|.++ ++|.|-
T Consensus 172 AGld~~~---~t~~e~l~~~vr~~i~p~~~-s~~~~l 204 (371)
T PRK07360 172 AGLDSMP---GTAAEILVDEVRRIICPEKI-KTAEWI 204 (371)
T ss_pred cCCCcCC---CcchhhccHHHHHhhCCCCC-CHHHHH
Confidence 9999996 998764 67777 666653
No 22
>PRK05926 hypothetical protein; Provisional
Probab=99.74 E-value=6.3e-18 Score=158.62 Aligned_cols=155 Identities=16% Similarity=0.194 Sum_probs=120.2
Q ss_pred cHHHHHHHH---ccCChHhhhhhcCCCCccceeCCCCCCceeeeeee----cCCCCCCCCCCcccCCCC-CC--CCCCch
Q 026651 65 RFQEVKESL---SSLKLNTVCEEAQCPNIGECWNGGGDGIATATIML----LGDTCTRGCRFCAVKTSR-NP--APPDPM 134 (235)
Q Consensus 65 ~~~~~~~~l---~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mI----lG~~CtedC~FCAQSt~~-~p--~~ld~e 134 (235)
...+...++ ....|..+++.|+ .+++-+.|+ .+-.+.+ .++.|++||+|||..... .+ ..+++|
T Consensus 29 s~eeal~Ll~~~~~~~l~~L~~~A~--~iR~~~~G~----~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~~~~~~ls~e 102 (370)
T PRK05926 29 SEEDALQLLLLTDAEDQRALWSFAD--LIRANRVGD----TVYYSSTLYLYPTNFCQFNCTFCSFYAKPGDPKGWFYTPD 102 (370)
T ss_pred CHHHHHHHHhCCCchHHHHHHHHHH--HHHHHhcCC----eEEEEEeeeeecCCCCCCCCCccccccCCCCcccccCCHH
Confidence 356666677 3467899999999 999999876 3333333 399999999999987321 12 368999
Q ss_pred hHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeec---------CCCCCHHHHHHHHh
Q 026651 135 EPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS---------DFRGDLRAVETLVH 204 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~s---------dg~l~~e~l~~L~e 204 (235)
|+++.|+.+ +.|++ +++| +|.. ++.+++.+.+.++.||+..|++.+..+.+ .++..+|++++|++
T Consensus 103 eI~~~a~~a-~~G~~ei~iv-~G~~---p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~Lke 177 (370)
T PRK05926 103 QLVQSIKEN-PSPITETHIV-AGCF---PSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKI 177 (370)
T ss_pred HHHHHHHHH-hcCCCEEEEE-eCcC---CCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 999999999 68987 6666 5765 34679999999999999999665554432 24567899999999
Q ss_pred cCCCeeccC-----cccccc-ccccccCCCCcc
Q 026651 205 SGLDVFAHN-----IETVKR-LQRIVRDPRAGL 231 (235)
Q Consensus 205 AG~d~ynHN-----LETs~r-lfp~Vcdtth~Y 231 (235)
||+++|+|| +|++++ |+|+.+ +++.|
T Consensus 178 AGl~~~~g~GaEi~~e~~r~~~~p~~~-t~~e~ 209 (370)
T PRK05926 178 AGLDSIPGGGAEILVDEIRETLAPGRL-SSQGF 209 (370)
T ss_pred cCcCccCCCCchhcCHHHHHhhCCCCC-CHHHH
Confidence 999999998 799998 778888 66544
No 23
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.71 E-value=2.6e-17 Score=150.54 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=122.2
Q ss_pred HHHHHHHHccCChHhhhhhcCCCCccceeC-CCCCCceeeeeee-----cCCCCCCCCCCcccCCCC-C--CCCCCchhH
Q 026651 66 FQEVKESLSSLKLNTVCEEAQCPNIGECWN-GGGDGIATATIML-----LGDTCTRGCRFCAVKTSR-N--PAPPDPMEP 136 (235)
Q Consensus 66 ~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~-~~~~~~~taT~mI-----lG~~CtedC~FCAQSt~~-~--p~~ld~eE~ 136 (235)
.++...+++...+..++..|+ .+++.+. |+ ..+|.+ .++.|+++|+||++.... . ...++++|+
T Consensus 5 ~~~~~~ll~~~~~~~l~~~A~--~vr~~~~~g~-----~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei 77 (340)
T TIGR03699 5 REEALELYKEADLLALGALAD--EVRRRRHPGN-----IVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEI 77 (340)
T ss_pred HHHHHHHccCCcHHHHHHHHH--HHHHHhcCCC-----eEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHH
Confidence 455667787778999999999 9999887 76 666654 399999999999976322 1 125899999
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEE---------EeecCCCCCHHHHHHHHhcCC
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE---------CLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ie---------vl~sdg~l~~e~l~~L~eAG~ 207 (235)
++.|+.+++.|++.+.+++|.. ++.+.+.+.+.+++||+..|.+.+. ++.+.|+.++|.+++|++||+
T Consensus 78 ~~~~~~~~~~G~~~i~l~gG~~---p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~ 154 (340)
T TIGR03699 78 LQKIEELVAYGGTQILLQGGVN---PDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGL 154 (340)
T ss_pred HHHHHHHHHcCCcEEEEecCCC---CCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCC
Confidence 9999999999998777777753 4566899999999999887766543 455778888999999999999
Q ss_pred CeeccC-cccc-----ccccccccCCCCccc
Q 026651 208 DVFAHN-IETV-----KRLQRIVRDPRAGLV 232 (235)
Q Consensus 208 d~ynHN-LETs-----~rlfp~Vcdtth~Y~ 232 (235)
++|+|| +||. +.++|+.+ +.+.|-
T Consensus 155 ~~~~~~g~E~~~~~~~~~~~~~~~-s~~~~l 184 (340)
T TIGR03699 155 DSIPGGGAEILSDRVRKIISPKKI-SSEEWL 184 (340)
T ss_pred CcCCCCcccccCHHHHHhhCCCCC-CHHHHH
Confidence 999985 6655 55566666 555553
No 24
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.70 E-value=1.1e-16 Score=147.28 Aligned_cols=155 Identities=18% Similarity=0.259 Sum_probs=122.1
Q ss_pred HHHHHHHHcc-CChHhhhhhcCCCCccceeCCCCCCceeeeeee-----cCCCCCCCCCCcccCCCCCC---CCCCchhH
Q 026651 66 FQEVKESLSS-LKLNTVCEEAQCPNIGECWNGGGDGIATATIML-----LGDTCTRGCRFCAVKTSRNP---APPDPMEP 136 (235)
Q Consensus 66 ~~~~~~~l~~-~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mI-----lG~~CtedC~FCAQSt~~~p---~~ld~eE~ 136 (235)
.++...++.. ..|..+.+.|+ .+++.+.|+ ..++.+ .++.|+++|.||+|+..... ..+++||+
T Consensus 3 ~~e~~~ll~~~~~~~~L~~~A~--~ir~~~~g~-----~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI 75 (343)
T TIGR03551 3 KEEALELFEARGNLFELFRLAD--ELRRDIVGD-----TVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEI 75 (343)
T ss_pred HHHHHHHHhCCChHHHHHHHHH--HHHHHhcCC-----eEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHH
Confidence 3456667754 67899999999 999998887 666532 18999999999999842211 25899999
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEe---------ecCCCCCHHHHHHHHhcCC
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL---------TSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl---------~sdg~l~~e~l~~L~eAG~ 207 (235)
++.++.++++|++.+.+++|.. ++.+.+.+.+.++.||+..|++.+.++ ++.|.+++|.+++|++||+
T Consensus 76 ~e~~~~~~~~G~~~i~l~gG~~---p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl 152 (343)
T TIGR03551 76 AERAAEAWKAGATEVCIQGGIH---PDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGL 152 (343)
T ss_pred HHHHHHHHHCCCCEEEEEeCCC---CCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 9999999999999877777753 455789999999999998886655443 2578999999999999999
Q ss_pred CeeccCccccccccc-----cccCCCC-ccccc
Q 026651 208 DVFAHNIETVKRLQR-----IVRDPRA-GLVMQ 234 (235)
Q Consensus 208 d~ynHNLETs~rlfp-----~Vcdtth-~Y~~s 234 (235)
++|+ +|+.++|+ +|| +++ +|++.
T Consensus 153 ~~i~---~~~~E~~~~~v~~~i~-~~~~~~~~~ 181 (343)
T TIGR03551 153 DSMP---GTAAEILDDEVRKVIC-PDKLSTAEW 181 (343)
T ss_pred cccc---CcchhhcCHHHHHhcC-CCCCCHHHH
Confidence 9997 77766665 788 764 77653
No 25
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.66 E-value=1.9e-16 Score=161.89 Aligned_cols=157 Identities=18% Similarity=0.132 Sum_probs=123.5
Q ss_pred HHHHHHHH--ccCChHhhhhhcCCCCccceeCCCCCCceeeeee-----ecCCCCCCCCCCcccCCCCC-C--CCCCchh
Q 026651 66 FQEVKESL--SSLKLNTVCEEAQCPNIGECWNGGGDGIATATIM-----LLGDTCTRGCRFCAVKTSRN-P--APPDPME 135 (235)
Q Consensus 66 ~~~~~~~l--~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~m-----IlG~~CtedC~FCAQSt~~~-p--~~ld~eE 135 (235)
..+...++ ++..|..+++.|+ .+++-+.|+-.-..+.||. =+++.|.++|+||+|++... + ..+++||
T Consensus 29 ~eEa~~Ll~~~~~dl~~L~~~A~--~vR~~~~G~~~~~~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eE 106 (843)
T PRK09234 29 VDEAAVLLTARGDDLADLCASAA--RVRDAGLGAAGRPGVVTYSRKVFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDE 106 (843)
T ss_pred HHHHHHHhcCCCccHHHHHHHHH--HHHHHHcCCcccCceEEEEeEEEecCCCCCCCCCCcCCCccCCCCCccccCCHHH
Confidence 45566666 4567999999999 8888776530000255554 23999999999999995321 1 3699999
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCC-------------CCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHH
Q 026651 136 PENTAKAIASWGVDYIVLTSVDRDDIP-------------DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL 202 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVTSg~RddL~-------------D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L 202 (235)
+++.|+++++.|++.+++|||.++++. +..++.+.++++.||++. .+.++++.|.++.++++.|
T Consensus 107 Il~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~---gl~p~i~~G~ls~~E~~~L 183 (843)
T PRK09234 107 VLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEET---GLLPHLNPGVMSWSELARL 183 (843)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhc---CCCceeeeCCCCHHHHHHH
Confidence 999999999999999999999986543 235899999999999863 3455677788899999999
Q ss_pred HhcCCCeeccCccc-cccccccccCCCC
Q 026651 203 VHSGLDVFAHNIET-VKRLQRIVRDPRA 229 (235)
Q Consensus 203 ~eAG~d~ynHNLET-s~rlfp~Vcdtth 229 (235)
+++|++ |+||||| +++||++++ ..|
T Consensus 184 k~~g~s-~gl~lEt~~~~l~~~~g-~~h 209 (843)
T PRK09234 184 KPVAPS-MGMMLETTSRRLFEEKG-GPH 209 (843)
T ss_pred HHhcCc-CCCCHHHHHHHHHHhhc-ccc
Confidence 999998 8999999 899998876 556
No 26
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.64 E-value=1.4e-15 Score=135.31 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=106.7
Q ss_pred ChHhhhhhcCCCCccce-eCCCCCCcee-eeeeecCCCCCCCCCCcccCCCCC-----CCCCCchhHHHHHHHHHHcCCc
Q 026651 77 KLNTVCEEAQCPNIGEC-WNGGGDGIAT-ATIMLLGDTCTRGCRFCAVKTSRN-----PAPPDPMEPENTAKAIASWGVD 149 (235)
Q Consensus 77 ~L~TVCeeA~CPNi~ec-~~~~~~~~~t-aT~mIlG~~CtedC~FCAQSt~~~-----p~~ld~eE~~~~A~aa~~~Gl~ 149 (235)
++..+..+|. .+.+- |.++ ..-. +.+-|-++.|+.+|.||+++.... ....+++|+++.|+.+++.|++
T Consensus 5 ~~~~l~~~a~--~~~~~~~~~~--~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~ 80 (296)
T TIGR00433 5 PLLDLLYEAF--QIHRKHFDPR--KVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGAT 80 (296)
T ss_pred cHHHHHHHHH--HHHHHhcCCC--EEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCC
Confidence 5555555565 44443 4343 1111 222233999999999999985321 1357889999999999999997
Q ss_pred -EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccccccccccCCC
Q 026651 150 -YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPR 228 (235)
Q Consensus 150 -y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rlfp~Vcdtt 228 (235)
++++++|.. +.+..+..+.+.|.++++. ..+.++++.|.+++|.++.|++||++.+++++|+++++|++|+ +.
T Consensus 81 ~~~l~~~g~~--~~~~~~~~~~~~i~~~~~~---~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~ 154 (296)
T TIGR00433 81 RFCLVASGRG--PKDREFMEYVEAMVQIVEE---MGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-ST 154 (296)
T ss_pred EEEEEEecCC--CChHHHHHHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CC
Confidence 577888865 3343444455555555443 3467788999999999999999999999999999999999999 78
Q ss_pred Cccccc
Q 026651 229 AGLVMQ 234 (235)
Q Consensus 229 h~Y~~s 234 (235)
|+|++.
T Consensus 155 ~s~~~~ 160 (296)
T TIGR00433 155 HTYDDR 160 (296)
T ss_pred CCHHHH
Confidence 998763
No 27
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.63 E-value=1.7e-15 Score=155.01 Aligned_cols=146 Identities=19% Similarity=0.237 Sum_probs=119.4
Q ss_pred cHHHHHHHHc--cCChHhhhhhcCCCCccceeCCCCCCceeeeeee-----cCCCCCCCCCCcccCCCCC---CCCCCch
Q 026651 65 RFQEVKESLS--SLKLNTVCEEAQCPNIGECWNGGGDGIATATIML-----LGDTCTRGCRFCAVKTSRN---PAPPDPM 134 (235)
Q Consensus 65 ~~~~~~~~l~--~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mI-----lG~~CtedC~FCAQSt~~~---p~~ld~e 134 (235)
...+...++. ...|..+|+.|+ .+++-+.|+ +.||.+ .++.|+++|+||+|+.... ...+++|
T Consensus 488 s~~eal~Ll~~~~~~l~~L~~~Ad--~iR~~~~G~-----~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~e 560 (843)
T PRK09234 488 TDDEALALFTADGPALEAVCRLAD--DLRRDVVGD-----DVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSLD 560 (843)
T ss_pred CHHHHHHHHcCCchhHHHHHHHHH--HHHHHhcCC-----eEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCHH
Confidence 4566667775 467999999999 999988887 777644 2899999999999995321 1268999
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEe---------ecCCCCCHHHHHHHHhc
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL---------TSDFRGDLRAVETLVHS 205 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl---------~sdg~l~~e~l~~L~eA 205 (235)
|+.+.|+.+.+.|++.+.+.+|..+ +...+.+.+.|++||+..|++.|+.. .+.|+..+|.+++|++|
T Consensus 561 eI~~~a~ea~~~G~tev~i~gG~~p---~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeA 637 (843)
T PRK09234 561 EVADRAWEAWVAGATEVCMQGGIHP---ELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALREA 637 (843)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC---CcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 9999999999999984444477543 45689999999999999998777654 45889999999999999
Q ss_pred CCCeeccCcccccccccc
Q 026651 206 GLDVFAHNIETVKRLQRI 223 (235)
Q Consensus 206 G~d~ynHNLETs~rlfp~ 223 (235)
|++.|+ +|++++|+.
T Consensus 638 GLds~p---gt~aeil~d 652 (843)
T PRK09234 638 GLDTIP---GTAAEILDD 652 (843)
T ss_pred CcCccC---CCchhhCCH
Confidence 999998 599999996
No 28
>PRK07094 biotin synthase; Provisional
Probab=99.62 E-value=4.1e-15 Score=134.62 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=119.5
Q ss_pred HHHHHHHccCChH---hhhhhcCCCCccceeCCCCCCceeeeeee--cCCCCCCCCCCcccCCCCC--C-CCCCchhHHH
Q 026651 67 QEVKESLSSLKLN---TVCEEAQCPNIGECWNGGGDGIATATIML--LGDTCTRGCRFCAVKTSRN--P-APPDPMEPEN 138 (235)
Q Consensus 67 ~~~~~~l~~~~L~---TVCeeA~CPNi~ec~~~~~~~~~taT~mI--lG~~CtedC~FCAQSt~~~--p-~~ld~eE~~~ 138 (235)
.+...+++..... .+.+.|+ .++.-+.++ .+-.+.+ +++.|+.+|.||+++.... . ..++++|+++
T Consensus 4 ~e~~~ll~~~~~~~~~~L~~~A~--~~r~~~~g~----~v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~ 77 (323)
T PRK07094 4 DEILELLSNDDEEELKYLFKAAD--EVRKKYVGD----EVHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILE 77 (323)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH--HHHHHhCCC----EEEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHH
Confidence 4566677544433 3888888 888777765 2222222 2999999999999984321 1 2368999999
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-
Q 026651 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV- 217 (235)
Q Consensus 139 ~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs- 217 (235)
.++.+.+.|++.+++++|.-+ .-..+.+.+.++.|++. ++ +.+..+.|..++|.++.|++||+++|++++||.
T Consensus 78 ~~~~~~~~g~~~i~l~gG~~~---~~~~~~l~~l~~~i~~~-~~--l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~ 151 (323)
T PRK07094 78 CAKKAYELGYRTIVLQSGEDP---YYTDEKIADIIKEIKKE-LD--VAITLSLGERSYEEYKAWKEAGADRYLLRHETAD 151 (323)
T ss_pred HHHHHHHCCCCEEEEecCCCC---CCCHHHHHHHHHHHHcc-CC--ceEEEecCCCCHHHHHHHHHcCCCEEEeccccCC
Confidence 999999999998888888522 22468999999999976 44 455567788999999999999999999999998
Q ss_pred ccccccccCCCCccccc
Q 026651 218 KRLQRIVRDPRAGLVMQ 234 (235)
Q Consensus 218 ~rlfp~Vcdtth~Y~~s 234 (235)
++.|..++ ++++|++.
T Consensus 152 ~~~~~~i~-~~~s~~~~ 167 (323)
T PRK07094 152 KELYAKLH-PGMSFENR 167 (323)
T ss_pred HHHHHHhC-CCCCHHHH
Confidence 99999999 88998763
No 29
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.62 E-value=1.7e-15 Score=138.75 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=95.6
Q ss_pred ecCCCCCCCCCCcccCCCCC-C--CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCC-------------CCchHHHHH
Q 026651 108 LLGDTCTRGCRFCAVKTSRN-P--APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-------------DGGSGHFAR 171 (235)
Q Consensus 108 IlG~~CtedC~FCAQSt~~~-p--~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~-------------D~ga~~~a~ 171 (235)
=+++.|+++|+||+|+.... + ..+++||+++.|+.+.+.|++.+++|||..++.. +...+++.+
T Consensus 9 ~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~ 88 (322)
T TIGR03550 9 PLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRE 88 (322)
T ss_pred ccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHH
Confidence 35999999999999995321 2 2699999999999999999999999999875543 012488999
Q ss_pred HHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCC
Q 026651 172 TVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRA 229 (235)
Q Consensus 172 ~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth 229 (235)
.++.|+++. .+.++++.|.+++++++.|++||++ +|||+||+ ++|++.+| .++
T Consensus 89 ~~~~i~~e~---~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~-~~~ 142 (322)
T TIGR03550 89 LCELALEET---GLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEA-HYG 142 (322)
T ss_pred HHHHHHHhc---CCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccc-cCC
Confidence 999999763 3567889999999999999999998 49999998 55677787 666
No 30
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.60 E-value=4e-15 Score=135.09 Aligned_cols=117 Identities=16% Similarity=0.284 Sum_probs=93.8
Q ss_pred eeecCCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCC
Q 026651 106 IMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (235)
Q Consensus 106 ~mIlG~~CtedC~FCAQSt~~~---p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~ 182 (235)
++-.++.|+++|+||+|+.... ...+++||+++.++.+.+.|++.+.+++|.. ++.+.+.+.+.++.||+..|+
T Consensus 8 ~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~---~~~~~~~~~~i~~~Ik~~~~~ 84 (309)
T TIGR00423 8 NINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLN---PQLDIEYYEELFRAIKQEFPD 84 (309)
T ss_pred eecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCC---CCCCHHHHHHHHHHHHHHCCC
Confidence 3445999999999999994221 1368999999999999999999777777754 345689999999999998887
Q ss_pred ceEEEe---------ecCCCCCHHHHHHHHhcCCCeecc-Ccccc-cccccccc
Q 026651 183 IMVECL---------TSDFRGDLRAVETLVHSGLDVFAH-NIETV-KRLQRIVR 225 (235)
Q Consensus 183 ~~ievl---------~sdg~l~~e~l~~L~eAG~d~ynH-NLETs-~rlfp~Vc 225 (235)
+.+..+ .++|+.++|.+++|++||+++|+| ++||. ++.+.+++
T Consensus 85 i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~ 138 (309)
T TIGR00423 85 VHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKIC 138 (309)
T ss_pred ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhC
Confidence 766544 368888999999999999999987 89988 44444444
No 31
>PRK06267 hypothetical protein; Provisional
Probab=99.59 E-value=1.6e-15 Score=140.73 Aligned_cols=142 Identities=17% Similarity=0.138 Sum_probs=116.4
Q ss_pred cCChHhhhhhcCCCCccceeCCCCCCceeeeeeec--CCCCC--CCCCCcccCCCCCC------CCCCchhHHHHHHHHH
Q 026651 75 SLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLL--GDTCT--RGCRFCAVKTSRNP------APPDPMEPENTAKAIA 144 (235)
Q Consensus 75 ~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIl--G~~Ct--edC~FCAQSt~~~p------~~ld~eE~~~~A~aa~ 144 (235)
+..|..+++.|+ .+++.+.|+ .+..+.++ ++.|+ ++|+||+|+..+.+ ..+++||+++.|+.++
T Consensus 3 ~~~~~~L~~~A~--~ir~~~fG~----~v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~ 76 (350)
T PRK06267 3 SEEILENSIKAF--KLTEKHHGN----IVSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMK 76 (350)
T ss_pred chHHHHHHHHHH--HHHHHHcCC----eEEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHH
Confidence 456788999999 999888876 45666666 99999 99999999953211 2579999999999999
Q ss_pred HcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-cccccc
Q 026651 145 SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRI 223 (235)
Q Consensus 145 ~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~ 223 (235)
+.|+++.+|++|.. +...++..+++.|+.++. +.++++.|..+.+++..+..+|++ +|+||. +++|+.
T Consensus 77 ~~Gv~~~~lsgG~~--~~~~el~~i~e~I~~~~~------~~~~~s~G~~d~~~~~~~~l~Gv~---g~~ET~~~~~~~~ 145 (350)
T PRK06267 77 RIGWKLEFISGGYG--YTTEEINDIAEMIAYIQG------CKQYLNVGIIDFLNINLNEIEGVV---GAVETVNPKLHRE 145 (350)
T ss_pred HcCCCEEEEecCCC--CCHHHHHHHHHHHHHhhC------CceEeecccCCHHHHhhccccCce---eeeecCCHHHHHh
Confidence 99999889999975 666677777777776653 356788999999999999999974 699999 889999
Q ss_pred ccCCCCccccc
Q 026651 224 VRDPRAGLVMQ 234 (235)
Q Consensus 224 Vcdtth~Y~~s 234 (235)
|| ++++|++.
T Consensus 146 i~-~~~s~ed~ 155 (350)
T PRK06267 146 IC-PGKPLDKI 155 (350)
T ss_pred hC-CCCCHHHH
Confidence 99 89999864
No 32
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.29 E-value=1.6e-11 Score=112.26 Aligned_cols=125 Identities=15% Similarity=0.141 Sum_probs=92.1
Q ss_pred eecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCC---------CCchHHHHHHHHHH
Q 026651 107 MLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP---------DGGSGHFARTVKAM 176 (235)
Q Consensus 107 mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~---------D~ga~~~a~~Ir~I 176 (235)
+.+++.|+.+|+||+.++.. ....+++||+++.|+.+.++|++.+++|||..+++. +.|...+.+.|++|
T Consensus 16 i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i 95 (336)
T PRK06245 16 IPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDL 95 (336)
T ss_pred eeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHH
Confidence 44599999999999977422 123799999999999999999999999999874433 11234556666665
Q ss_pred HhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-cccc---ccccCCCCcccc
Q 026651 177 KKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQ---RIVRDPRAGLVM 233 (235)
Q Consensus 177 k~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlf---p~Vcdtth~Y~~ 233 (235)
.+......+.+++..+.++++.++.|+++|+. +++|+||. +.++ ..++ +.+.|++
T Consensus 96 ~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~-~~~~~~~ 154 (336)
T PRK06245 96 CELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGS-PGKDPEL 154 (336)
T ss_pred HHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCC-CCCCHHH
Confidence 44321212344567788899999999999986 69999996 5666 5557 7777765
No 33
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=98.89 E-value=1.1e-08 Score=83.07 Aligned_cols=124 Identities=11% Similarity=0.205 Sum_probs=89.2
Q ss_pred eeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCc-----EEEEEeecCCCCCCCchHHHHHHHHHHHhh
Q 026651 106 IMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVD-----YIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (235)
Q Consensus 106 ~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~-----y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~ 179 (235)
++.++..|+.+|.||...... .....+++++.+.++.+.+.|.+ ..++++|.- .+.. ..++.+.++.+++.
T Consensus 4 ~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~-~~~~--~~~~~~~~~~~~~~ 80 (216)
T smart00729 4 LYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTP-TLLS--PEQLEELLEAIREI 80 (216)
T ss_pred EEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCC-CCCC--HHHHHHHHHHHHHh
Confidence 566799999999999998421 13457788898888888776642 344455543 2222 23566666666665
Q ss_pred CC---CceEEEeecCCCCCHHHHHHHHhcCCCeeccCccc-cccccccccCCCCcccc
Q 026651 180 KP---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIET-VKRLQRIVRDPRAGLVM 233 (235)
Q Consensus 180 ~p---~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLET-s~rlfp~Vcdtth~Y~~ 233 (235)
.+ ...+.+.+..+.++++.++.|+++|++.++.+||| .+..+..+. ..++|++
T Consensus 81 ~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~~~~ 137 (216)
T smart00729 81 LGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHTVED 137 (216)
T ss_pred CCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCCHHH
Confidence 43 35677778778899999999999999999999997 467777777 6777754
No 34
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=98.78 E-value=9.4e-08 Score=76.22 Aligned_cols=108 Identities=20% Similarity=0.310 Sum_probs=82.9
Q ss_pred cCCCCCCCCCCcccCCCCCCCC--CCc-hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceE
Q 026651 109 LGDTCTRGCRFCAVKTSRNPAP--PDP-MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV 185 (235)
Q Consensus 109 lG~~CtedC~FCAQSt~~~p~~--ld~-eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~i 185 (235)
.+..|+-+|.||.+........ .+. ++..+.+......+.++++++.|.- +... ++.+.++.+++..+...+
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep--~~~~---~~~~~i~~~~~~~~~~~~ 77 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEP--LLYP---ELAELLRRLKKELPGFEI 77 (204)
T ss_pred cCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcC--CccH---hHHHHHHHHHhhCCCceE
Confidence 4689999999999984332221 221 4677777788888887777766643 3332 899999999987677788
Q ss_pred EEeecCCCCCHHHHHHHHhcCCCeeccCcccccccc
Q 026651 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQ 221 (235)
Q Consensus 186 evl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rlf 221 (235)
.+.+..+.++++.++.|+++|++++..+||+.....
T Consensus 78 ~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~ 113 (204)
T cd01335 78 SIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEV 113 (204)
T ss_pred EEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHH
Confidence 888887777999999999999999999999986553
No 35
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=98.66 E-value=1.4e-07 Score=89.36 Aligned_cols=135 Identities=18% Similarity=0.298 Sum_probs=103.6
Q ss_pred HHHHHHHHccCChHhhhhhcCCCCcc-ceeCCCCCCceeeeeeec-----CCCCCCCCCCcccCCCC-CC--CCCCchhH
Q 026651 66 FQEVKESLSSLKLNTVCEEAQCPNIG-ECWNGGGDGIATATIMLL-----GDTCTRGCRFCAVKTSR-NP--APPDPMEP 136 (235)
Q Consensus 66 ~~~~~~~l~~~~L~TVCeeA~CPNi~-ec~~~~~~~~~taT~mIl-----G~~CtedC~FCAQSt~~-~p--~~ld~eE~ 136 (235)
..+...++....+.++=+.|+ .++ .-..+. +.||.+- ++.|--+|.||+=.... .+ ..+++||+
T Consensus 23 ~~d~~~Ll~~~~~~~l~~~A~--~~r~~~~~~~-----~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI 95 (370)
T COG1060 23 REDALALLSPADLEELEELAD--KARRRKRVGD-----GVTYVVNRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEI 95 (370)
T ss_pred HHHHHHHhccCcHHHHHHHHH--HHHHhhccCC-----cEEEEEeecCCcchhhcCCCCccccccCCCCccccccCHHHH
Confidence 456677787778888888888 666 333333 5555543 99999999999988422 12 37999999
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecC---------CCCCHHHHHHHHhcCC
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD---------FRGDLRAVETLVHSGL 207 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sd---------g~l~~e~l~~L~eAG~ 207 (235)
.+.++++.++|++.+++++|-.+ +...+-+.+.++.||+..|++.+..+.+- ++..+|.+++|++||+
T Consensus 96 ~~~~~~~~~~G~~Evli~gG~~p---~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGl 172 (370)
T COG1060 96 LEEVREAVKRGITEVLIVGGEHP---ELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGL 172 (370)
T ss_pred HHHHHHHHHcCCeEEEEecCcCC---CcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCC
Confidence 99999999999999999999764 45566999999999998888776666543 3334566999999999
Q ss_pred Cee
Q 026651 208 DVF 210 (235)
Q Consensus 208 d~y 210 (235)
+-+
T Consensus 173 dsm 175 (370)
T COG1060 173 DSM 175 (370)
T ss_pred CcC
Confidence 876
No 36
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=98.43 E-value=1.6e-06 Score=81.59 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=97.6
Q ss_pred hhhhcCCCCccceeCCCCCCceeeee-eecCCCCCCCCCCcccCCCC--C--CCCCCchhHHHHHHHHHHcCCcEEEEEe
Q 026651 81 VCEEAQCPNIGECWNGGGDGIATATI-MLLGDTCTRGCRFCAVKTSR--N--PAPPDPMEPENTAKAIASWGVDYIVLTS 155 (235)
Q Consensus 81 VCeeA~CPNi~ec~~~~~~~~~taT~-mIlG~~CtedC~FCAQSt~~--~--p~~ld~eE~~~~A~aa~~~Gl~y~VVTS 155 (235)
|=-||. |-.+|--....|...... +-+.+.|.-+|.||.+..+. . ...++.+|+.+.++...+.|++.+.+|.
T Consensus 37 ~~~~~~--~~~~~~l~D~~gr~~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tG 114 (373)
T PLN02951 37 VDPEAS--NPVSDMLVDSFGRRHNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTG 114 (373)
T ss_pred cccccC--CCCCcccccCCCCcccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEEC
Confidence 444555 555655544444444433 33489999999999876321 1 1358899999999999999999888887
Q ss_pred ecCCCCCCCchHHHHHHHHHHHhhCCCce-EEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcc
Q 026651 156 VDRDDIPDGGSGHFARTVKAMKKQKPDIM-VECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGL 231 (235)
Q Consensus 156 g~RddL~D~ga~~~a~~Ir~Ik~~~p~~~-ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y 231 (235)
|- + +-.. .+.+.|+.+++. +++. +- +++.|.+-.+.++.|+++|+++++..|++. +..|..|+ ....+
T Consensus 115 GE-P-llr~---dl~eli~~l~~~-~gi~~i~-itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~it-r~~~~ 184 (373)
T PLN02951 115 GE-P-TLRK---DIEDICLQLSSL-KGLKTLA-MTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT-RRKGH 184 (373)
T ss_pred CC-C-cchh---hHHHHHHHHHhc-CCCceEE-EeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh-cCCCH
Confidence 64 2 3222 366667777653 3332 33 456777666789999999999999999997 66788887 45554
No 37
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=98.43 E-value=2.5e-07 Score=72.30 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=84.8
Q ss_pred cCCCCCCCCCCcccCCC--C-CCCCCCchhHHHHHHHH-HHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhh-CCCc
Q 026651 109 LGDTCTRGCRFCAVKTS--R-NPAPPDPMEPENTAKAI-ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ-KPDI 183 (235)
Q Consensus 109 lG~~CtedC~FCAQSt~--~-~p~~ld~eE~~~~A~aa-~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~-~p~~ 183 (235)
.+..|+-+|.||.+... . .+..+.++++.+.++.. ...|+.++.++.|.- +... ++.+.+..+++. .+..
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep--~~~~---~~~~~~~~~~~~~~~~~ 77 (166)
T PF04055_consen 3 TTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEP--TLHP---DFIELLELLRKIKKRGI 77 (166)
T ss_dssp EESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTG--GGSC---HHHHHHHHHHHCTCTTE
T ss_pred ECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCC--Ccch---hHHHHHHHHHHhhcccc
Confidence 46789999999999952 1 22368889999999999 588855676666643 2222 444455555443 2456
Q ss_pred eEEEeecCCCCCHHHHHHHHhcCCCeeccCccccccc-ccc-ccCCCCcccc
Q 026651 184 MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-QRI-VRDPRAGLVM 233 (235)
Q Consensus 184 ~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rl-fp~-Vcdtth~Y~~ 233 (235)
.+.+.++....+.+.++.|+++|++++..+|||.... +.. +. ..+++++
T Consensus 78 ~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~ 128 (166)
T PF04055_consen 78 RISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFER 128 (166)
T ss_dssp EEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHH
T ss_pred ceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHH
Confidence 7888888888889999999999999999999999885 443 44 4555543
No 38
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=98.36 E-value=4.5e-06 Score=76.27 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=86.3
Q ss_pred CCCCCCCCCCcccCC-CC----CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCc-
Q 026651 110 GDTCTRGCRFCAVKT-SR----NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI- 183 (235)
Q Consensus 110 G~~CtedC~FCAQSt-~~----~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~- 183 (235)
.+.|.-+|.||.+.. .. ....++.+|+.++++.+.+.|++.+.+|.|.= +-..+ +.+.|+.+++. +.+
T Consensus 17 T~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEP--ll~~~---l~~li~~i~~~-~gi~ 90 (334)
T TIGR02666 17 TDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEP--LLRKD---LVELVARLAAL-PGIE 90 (334)
T ss_pred cCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccc--cccCC---HHHHHHHHHhc-CCCC
Confidence 899999999999873 21 12468999999999999999999888888743 44444 55556666542 334
Q ss_pred eEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcccc
Q 026651 184 MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLVM 233 (235)
Q Consensus 184 ~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~~ 233 (235)
.+.+ ++.|.+-.+.++.|+++|++.++-.|++. +..|..+....++|++
T Consensus 91 ~v~i-tTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~ 140 (334)
T TIGR02666 91 DIAL-TTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQ 140 (334)
T ss_pred eEEE-EeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHH
Confidence 4554 45677777899999999999999999995 5677787622346653
No 39
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=98.34 E-value=6.1e-06 Score=75.24 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=87.3
Q ss_pred eeecCCCCCCCCCCcccCCC----CCCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCC
Q 026651 106 IMLLGDTCTRGCRFCAVKTS----RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (235)
Q Consensus 106 ~mIlG~~CtedC~FCAQSt~----~~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p 181 (235)
.+-+.+.|.-+|.||..... .....++.+|+.++++.+.+.|++.+.+|.|.= +-.. .+.+.|+.+++..+
T Consensus 20 ~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEP--ll~~---~l~~li~~i~~~~~ 94 (331)
T PRK00164 20 RISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEP--LLRK---DLEDIIAALAALPG 94 (331)
T ss_pred EEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCC--cCcc---CHHHHHHHHHhcCC
Confidence 34458899999999998632 112368999999999999999999999987642 3333 35666667765422
Q ss_pred CceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcccc
Q 026651 182 DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLVM 233 (235)
Q Consensus 182 ~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~~ 233 (235)
...+.+ .+.|.+-.+.++.|+++|+++++-.|++. ++.|..|+ ...+|++
T Consensus 95 ~~~i~i-tTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~~~~~ 145 (331)
T PRK00164 95 IRDLAL-TTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRDRLDQ 145 (331)
T ss_pred CceEEE-EcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCCCHHH
Confidence 234554 45566556789999999999999999985 55677787 5566653
No 40
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=98.21 E-value=1.1e-05 Score=72.44 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=88.8
Q ss_pred eeecCCCCCCCCCCcccCCCCC--CCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCc
Q 026651 106 IMLLGDTCTRGCRFCAVKTSRN--PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (235)
Q Consensus 106 ~mIlG~~CtedC~FCAQSt~~~--p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~ 183 (235)
.+-+.+.|.-+|.||....... ...++.+|+.++.+.+...|++.+.+|.|-= +-..+ +.+.|+.+++.. .
T Consensus 13 ~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEP--ll~~~---l~~iv~~l~~~g--~ 85 (302)
T TIGR02668 13 RISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEP--LLRKD---LIEIIRRIKDYG--I 85 (302)
T ss_pred EEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECccc--ccccC---HHHHHHHHHhCC--C
Confidence 4445999999999998863211 2468999999999999999999988887642 43433 456666776542 2
Q ss_pred -eEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcccc
Q 026651 184 -MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLVM 233 (235)
Q Consensus 184 -~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~~ 233 (235)
.+. +...|.+..+.++.|+++|++.++-.|++. +..|..|. ...+|++
T Consensus 86 ~~v~-i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~ 135 (302)
T TIGR02668 86 KDVS-MTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKIT-GRGALDR 135 (302)
T ss_pred ceEE-EEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhcc-CCCcHHH
Confidence 444 355677767889999999999999999996 67788888 5666654
No 41
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=98.20 E-value=8.7e-06 Score=74.83 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=87.3
Q ss_pred cCCCCCCCCCCcccCCCC---CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCc-e
Q 026651 109 LGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI-M 184 (235)
Q Consensus 109 lG~~CtedC~FCAQSt~~---~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~-~ 184 (235)
+.+.|.-+|.||...... ....++.+|+.++++.+.++|++.+.+|.|.= +-.. .+.+.++.+++. +.+ .
T Consensus 20 iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEP--llr~---dl~~li~~i~~~-~~l~~ 93 (329)
T PRK13361 20 VTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEP--LVRR---GCDQLVARLGKL-PGLEE 93 (329)
T ss_pred ecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCC--Cccc---cHHHHHHHHHhC-CCCce
Confidence 488999999999855211 12368999999999999999999999997652 4333 355666677653 222 3
Q ss_pred EEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcccc
Q 026651 185 VECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLVM 233 (235)
Q Consensus 185 ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~~ 233 (235)
+.+ +..|.+-.+.++.|+++|+++++-.|++. +.-|..|+ ...+|++
T Consensus 94 i~i-tTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~-~~g~~~~ 141 (329)
T PRK13361 94 LSL-TTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALT-RNGRLER 141 (329)
T ss_pred EEE-EeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhc-CCCCHHH
Confidence 444 45566556789999999999999999997 67888898 6777754
No 42
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=97.88 E-value=2.9e-05 Score=73.07 Aligned_cols=104 Identities=19% Similarity=0.355 Sum_probs=75.2
Q ss_pred eeeeecCCCCCCCCCCcccCC---CCCCC-----C-CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHH
Q 026651 104 ATIMLLGDTCTRGCRFCAVKT---SRNPA-----P-PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVK 174 (235)
Q Consensus 104 aT~mIlG~~CtedC~FCAQSt---~~~p~-----~-ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir 174 (235)
...+-..|.|+++|.||-+|. ++.+. + -+.+++...|+...+.|+. ||-|+ |--.+++..+.||
T Consensus 29 KlVlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Gas---iTGGd----Pl~~ieR~~~~ir 101 (353)
T COG2108 29 KLVLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGAS---ITGGD----PLLEIERTVEYIR 101 (353)
T ss_pred ceEEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccccc---ccCCC----hHHHHHHHHHHHH
Confidence 345555999999999999993 33221 2 3446666666655555543 44442 3346899999999
Q ss_pred HHHhhC-CCceEEEeecCCCCCHHHHHHHHhcCCCeeccCc
Q 026651 175 AMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (235)
Q Consensus 175 ~Ik~~~-p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNL 214 (235)
.+|++. .+..+++.++--..++|.+++|.+||+|-+--|.
T Consensus 102 ~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp 142 (353)
T COG2108 102 LLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHP 142 (353)
T ss_pred HHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecC
Confidence 999876 4578999999999999999999999999654443
No 43
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=97.88 E-value=0.00017 Score=67.08 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=91.4
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC--CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR--NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~--~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~ 180 (235)
....+-+...|.-+|.||.+.... ....++.+++.++.+.+.+.|+..+.+|.|.= +-.. .|.+.++.+++.
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEP--ll~~---~~~~il~~~~~~- 89 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEP--LLRK---DLEELVAHAREL- 89 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCcc--CCch---hHHHHHHHHHHc-
Confidence 344455589999999999876321 13468899999999999999988888886542 3332 356778888765
Q ss_pred CCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcccc
Q 026651 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLVM 233 (235)
Q Consensus 181 p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~~ 233 (235)
+..+.+.+.-.+++++.++.|+++|++.+.--|++. +..|..++....+|++
T Consensus 90 -g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~ 142 (378)
T PRK05301 90 -GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAK 142 (378)
T ss_pred -CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHH
Confidence 345666766666899999999999999999999986 6777778732346654
No 44
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=97.87 E-value=8.1e-05 Score=72.82 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=71.1
Q ss_pred CCCCCCCCCcccCCCCC---CCCCCc------hhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhC
Q 026651 111 DTCTRGCRFCAVKTSRN---PAPPDP------MEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (235)
Q Consensus 111 ~~CtedC~FCAQSt~~~---p~~ld~------eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~ 180 (235)
--|+.+|.||++..... ....++ +|+...++.....|.+ ..|.-.|..+.+ -..+++.+.++.|++..
T Consensus 171 PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~--L~~~~L~~Ll~~i~~~f 248 (488)
T PRK08207 171 PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTS--LTAEELERLLEEIYENF 248 (488)
T ss_pred CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccC--CCHHHHHHHHHHHHHhc
Confidence 57999999999884211 111111 2333333333333444 234444433322 22456666666666554
Q ss_pred CC------ceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCcccc
Q 026651 181 PD------IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGLVM 233 (235)
Q Consensus 181 p~------~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y~~ 233 (235)
|+ .++|.--|+ .+++|.++.|+++|+++++.|+||.- +....|. ..|++++
T Consensus 249 ~~~~~~~EiTvE~grPd-~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ig-R~ht~e~ 306 (488)
T PRK08207 249 PDVKNVKEFTVEAGRPD-TITEEKLEVLKKYGVDRISINPQTMNDETLKAIG-RHHTVED 306 (488)
T ss_pred cccCCceEEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhC-CCCCHHH
Confidence 32 223322233 46999999999999999999999965 6777787 7788765
No 45
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=97.72 E-value=9.2e-05 Score=69.02 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=74.1
Q ss_pred CCCCCCCcccCCCCC-CCCCC--chhHHHHHHHHHHcC---CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC---CCc
Q 026651 113 CTRGCRFCAVKTSRN-PAPPD--PMEPENTAKAIASWG---VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDI 183 (235)
Q Consensus 113 CtedC~FCAQSt~~~-p~~ld--~eE~~~~A~aa~~~G---l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~---p~~ 183 (235)
|+..|.||++.+... ....+ .+.+.+..+.+...| ++.+.+..| .+. --..+.+.+.++.|++.. +.+
T Consensus 11 C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGG-tpt--~l~~~~l~~ll~~i~~~~~~~~~~ 87 (377)
T PRK08599 11 CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGG-TPT--ALSAEQLERLLTAIHRNLPLSGLE 87 (377)
T ss_pred cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCC-Ccc--cCCHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999873211 11221 233333334444443 333433333 222 223567777788887753 223
Q ss_pred eEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcccc
Q 026651 184 MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLVM 233 (235)
Q Consensus 184 ~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~~ 233 (235)
.+-+-+.-..++.+.++.|+++|+++++-.+||. ++....+. ..|++++
T Consensus 88 eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~~~ 137 (377)
T PRK08599 88 EFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNEED 137 (377)
T ss_pred EEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHH
Confidence 4444456667799999999999999999999996 67777887 7787764
No 46
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.72 E-value=0.00044 Score=66.98 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=82.1
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCC--CCCc-----hHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDI--PDGG-----SGHFARTVK 174 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL--~D~g-----a~~~a~~Ir 174 (235)
+-.++-++..|+..|.||+..... .....+++++++.++...+.|++.+++++.+-++. .+++ ...+++.++
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~ 247 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLE 247 (467)
T ss_pred cEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHH
Confidence 455777799999999999986322 12357889999999998888999888887653221 1111 246888888
Q ss_pred HHHhhCCCceEEEe--ecCCCCCHHHHHHHHhc--CCCeeccCccccc
Q 026651 175 AMKKQKPDIMVECL--TSDFRGDLRAVETLVHS--GLDVFAHNIETVK 218 (235)
Q Consensus 175 ~Ik~~~p~~~ievl--~sdg~l~~e~l~~L~eA--G~d~ynHNLETs~ 218 (235)
+|.+..+...|.+. -|+. ++++.++.|+++ |...+|--||+.-
T Consensus 248 ~l~~~~~~~~ir~~~~~p~~-l~~ell~~m~~~~~g~~~i~iglQSgs 294 (467)
T PRK14329 248 MVAEAVPDMRIRFSTSHPKD-MTDDVLEVMAKYDNICKHIHLPVQSGS 294 (467)
T ss_pred HHHhcCCCcEEEEecCCccc-CCHHHHHHHHhCCCCCCeEEeCCCcCC
Confidence 88765444444443 3443 588999999987 7999999999854
No 47
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=97.69 E-value=0.00042 Score=63.75 Aligned_cols=120 Identities=16% Similarity=0.240 Sum_probs=87.1
Q ss_pred eeecCCCCCCCCCCcccCCC--CCCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCc
Q 026651 106 IMLLGDTCTRGCRFCAVKTS--RNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (235)
Q Consensus 106 ~mIlG~~CtedC~FCAQSt~--~~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~ 183 (235)
..-+...|.-+|.||.+... .....++.++..++.+.+.++|+..+.+|.|.= +-.. +|.+.++.+++. +.
T Consensus 10 ~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEP--ll~~---~~~~ii~~~~~~--g~ 82 (358)
T TIGR02109 10 LAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEP--LARP---DLVELVAHARRL--GL 82 (358)
T ss_pred EEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCccc--cccc---cHHHHHHHHHHc--CC
Confidence 44458999999999987621 112468899999999999999988888887643 3222 355677777764 34
Q ss_pred eEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCccc
Q 026651 184 MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLV 232 (235)
Q Consensus 184 ~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~ 232 (235)
.+.+.+...+++++.++.|+++|++.+.=-|+.. +..+..++....+|+
T Consensus 83 ~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~ 132 (358)
T TIGR02109 83 YTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFE 132 (358)
T ss_pred eEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHH
Confidence 5666666667899999999999999998888887 356667762223454
No 48
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=97.65 E-value=0.00049 Score=66.96 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=77.4
Q ss_pred eecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHH-HHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCC-Cc
Q 026651 107 MLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAI-ASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DI 183 (235)
Q Consensus 107 mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa-~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~ 183 (235)
+..+..||-+|.||++.... .-..-+++.+++..+.. ++.|++++.++-.. + --.-+++.+..++|.+..| .+
T Consensus 197 i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~---f-~~~~~~~~~l~~~l~~~~~l~i 272 (497)
T TIGR02026 197 PNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE---P-TINRKKFQEFCEEIIARNPISV 272 (497)
T ss_pred eeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc---c-ccCHHHHHHHHHHHHhcCCCCe
Confidence 44588999999999998421 11235667666665544 56799876664322 1 1123567777777766532 23
Q ss_pred eEEEe--ecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcccc
Q 026651 184 MVECL--TSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLVM 233 (235)
Q Consensus 184 ~ievl--~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~~ 233 (235)
...+- +.+...+++.++.+++||+.++.--+||. ++-...+. ..+++++
T Consensus 273 ~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t~~~ 324 (497)
T TIGR02026 273 TWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTTTST 324 (497)
T ss_pred EEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCCHHH
Confidence 33222 23334488999999999999999999995 34555555 5555543
No 49
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=97.64 E-value=0.00051 Score=64.93 Aligned_cols=118 Identities=16% Similarity=0.243 Sum_probs=78.5
Q ss_pred eeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecC----CCCCCCchHHHHHHHHHHHhh
Q 026651 105 TIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDR----DDIPDGGSGHFARTVKAMKKQ 179 (235)
Q Consensus 105 T~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~R----ddL~D~ga~~~a~~Ir~Ik~~ 179 (235)
.++..+..|+.+|.||++...+ .....+++++++.++...+.|++.+++++.+- +|+.. ...+.+.+++|++.
T Consensus 140 ~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~--~~~l~~Ll~~l~~~ 217 (414)
T TIGR01579 140 AFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKN--GTSLAKLLEQILQI 217 (414)
T ss_pred EEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCC--CCcHHHHHHHHhcC
Confidence 3555699999999999987322 12357889999999999999999888887432 22211 24577777777753
Q ss_pred CCCceEEEe--ecCCCCCHHHHHHHHhcC--CCeeccCccccc-ccccccc
Q 026651 180 KPDIMVECL--TSDFRGDLRAVETLVHSG--LDVFAHNIETVK-RLQRIVR 225 (235)
Q Consensus 180 ~p~~~ievl--~sdg~l~~e~l~~L~eAG--~d~ynHNLETs~-rlfp~Vc 225 (235)
.....+.+. -|+ .++++.++.|+++| ...++--|||.- +-...+.
T Consensus 218 ~~~~~ir~~~~~p~-~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~ 267 (414)
T TIGR01579 218 PGIKRIRLSSIDPE-DIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR 267 (414)
T ss_pred CCCcEEEEeCCChh-hCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC
Confidence 211123332 122 35899999999887 678888888853 3333343
No 50
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.62 E-value=0.0007 Score=65.44 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=79.6
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCC
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p 181 (235)
+..++-++..|+..|.||++...+ .....+++++++.++...+.|++.+++++.+-.... .+...|++.+++|.+...
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~-~~~~~l~~Ll~~l~~~~~ 232 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYK-EQSTDFAGLIQMLLDETT 232 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCccc-CCcccHHHHHHHHhcCCC
Confidence 445777799999999999997311 123578899999999999999999888876543221 123468888888765321
Q ss_pred CceEEEee--cCCCCCHHHHHHHHhcC--CCeeccCcccc
Q 026651 182 DIMVECLT--SDFRGDLRAVETLVHSG--LDVFAHNIETV 217 (235)
Q Consensus 182 ~~~ievl~--sdg~l~~e~l~~L~eAG--~d~ynHNLETs 217 (235)
...|.+.. |+. ++++-++.++++| ...+|--+|+.
T Consensus 233 ~~~ir~~~~~p~~-~~~ell~~m~~~~~~~~~l~lgvQSg 271 (449)
T PRK14332 233 IERIRFTSPHPKD-FPDHLLSLMAKNPRFCPNIHLPLQAG 271 (449)
T ss_pred cceEEEECCCccc-CCHHHHHHHHhCCCccceEEECCCcC
Confidence 11344333 333 4788999999998 78888888875
No 51
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=97.58 E-value=0.0013 Score=55.13 Aligned_cols=116 Identities=12% Similarity=0.170 Sum_probs=77.6
Q ss_pred CceeeeeeecCCCCCCCCCCcccCCC--CC-CCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHH
Q 026651 100 GIATATIMLLGDTCTRGCRFCAVKTS--RN-PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (235)
Q Consensus 100 ~~~taT~mIlG~~CtedC~FCAQSt~--~~-p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~I 176 (235)
|.+.-++.+....|+-+|+||..... .. ...++.+++.+..+.... .++.+.+|.|.= +-.. ++.+.++.+
T Consensus 13 ~~g~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~i~~sGGEP--ll~~---~l~~li~~~ 86 (191)
T TIGR02495 13 YPGKLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQG-LIDGVVITGGEP--TLQA---GLPDFLRKV 86 (191)
T ss_pred CCCCeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhcC-CCCeEEEECCcc--cCcH---hHHHHHHHH
Confidence 33455666778999999999998621 11 135788888877665422 256677775432 3332 267777777
Q ss_pred HhhCCCceEEEeecCCCCCHHHHHHHHhcC-CCeeccCcccccccccccc
Q 026651 177 KKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDVFAHNIETVKRLQRIVR 225 (235)
Q Consensus 177 k~~~p~~~ievl~sdg~l~~e~l~~L~eAG-~d~ynHNLETs~rlfp~Vc 225 (235)
++. +..+.+ .+.|. +++.++.++++| ++.+.=.++..++.|..+.
T Consensus 87 ~~~--g~~v~i-~TNg~-~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~ 132 (191)
T TIGR02495 87 REL--GFEVKL-DTNGS-NPRVLEELLEEGLVDYVAMDVKAPPEKYPELY 132 (191)
T ss_pred HHC--CCeEEE-EeCCC-CHHHHHHHHhcCCCcEEEEeccCChHHHHHHH
Confidence 764 345543 45666 578899999999 6888888887777777765
No 52
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=97.57 E-value=0.00074 Score=64.88 Aligned_cols=115 Identities=11% Similarity=0.205 Sum_probs=74.4
Q ss_pred cCCCCCCCCCCcccCC---CCCCCCCCchhHHHHHHHHHHc--CCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCc
Q 026651 109 LGDTCTRGCRFCAVKT---SRNPAPPDPMEPENTAKAIASW--GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (235)
Q Consensus 109 lG~~CtedC~FCAQSt---~~~p~~ld~eE~~~~A~aa~~~--Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~ 183 (235)
-+-.||-+|.||+... ++.....+++.+++..+...+. |++.+.+.- |.+. ..-.++.+..+.|++. ++
T Consensus 202 tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~D---d~f~-~~~~~~~~l~~~l~~~--~i 275 (472)
T TIGR03471 202 TGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDD---DTFT-DDKPRAEEIARKLGPL--GV 275 (472)
T ss_pred ecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeC---CCCC-CCHHHHHHHHHHHhhc--Cc
Confidence 3779999999998652 2211246778888877776664 677555421 1122 2235666666677653 23
Q ss_pred eEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcc
Q 026651 184 MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGL 231 (235)
Q Consensus 184 ~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y 231 (235)
...+-+. ..+++|.++.|++||..++.--+||. ++....+. ..++.
T Consensus 276 ~~~~~~~-~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~~ 322 (472)
T TIGR03471 276 TWSCNAR-ANVDYETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLTV 322 (472)
T ss_pred eEEEEec-CCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCCH
Confidence 3333332 34689999999999999999999996 55555565 45544
No 53
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=97.56 E-value=0.0011 Score=64.30 Aligned_cols=130 Identities=17% Similarity=0.273 Sum_probs=85.9
Q ss_pred cceeCCCCCCceeee-eeecCCCCCCCCCCcccCCC-----C---CCCCCCchhHHHHHHHHHHc--CCcEEEEEeecCC
Q 026651 91 GECWNGGGDGIATAT-IMLLGDTCTRGCRFCAVKTS-----R---NPAPPDPMEPENTAKAIASW--GVDYIVLTSVDRD 159 (235)
Q Consensus 91 ~ec~~~~~~~~~taT-~mIlG~~CtedC~FCAQSt~-----~---~p~~ld~eE~~~~A~aa~~~--Gl~y~VVTSg~Rd 159 (235)
.-||+.+.++. +|- ..-+...|.=+|.||..+.. . ....++++|+++.++.+.+. +++.+.+| |-++
T Consensus 12 hpc~~~~~~~~-~~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~ia-G~GE 89 (442)
T TIGR01290 12 HPCYSVEAHHY-FARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIA-GPGD 89 (442)
T ss_pred CCCCChhhccC-cCEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEe-cCCC
Confidence 45887542222 222 23348899999999996521 1 11358999999998888765 45555555 4443
Q ss_pred CCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-----cccccccc
Q 026651 160 DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-----KRLQRIVR 225 (235)
Q Consensus 160 dL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-----~rlfp~Vc 225 (235)
-|-. .+...++++.+++..|++.+-+ ...|.+..+.+++|++.|+|.+.=-|..+ ..+||-|+
T Consensus 90 PLl~--~e~~~~~l~~~~~~~~~i~i~l-sTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~ 157 (442)
T TIGR01290 90 PLAN--IGKTFQTLELVARQLPDVKLCL-STNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVW 157 (442)
T ss_pred cccC--ccccHHHHHHHHHhcCCCeEEE-ECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhc
Confidence 3432 2456778888888877776644 45666669999999999999887666643 45555544
No 54
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=97.55 E-value=0.00071 Score=64.26 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=77.9
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCC----CCCCCchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRD----DIPDGGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd----dL~D~ga~~~a~~Ir~Ik 177 (235)
+-.++-.+..|+.+|.||++.... .....+++++++.++...+.|.+.+++|+.+-. |+. +...+.+.+++|+
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~--~~~~l~~Ll~~l~ 216 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLK--GETNLADLLRELS 216 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCC--CCcCHHHHHHHHh
Confidence 445566789999999999987322 123578899999999998899998888875421 122 1235788888887
Q ss_pred hhCCCceEEEe--ecCCCCCHHHHHHHHhcC--CCeeccCcccc
Q 026651 178 KQKPDIMVECL--TSDFRGDLRAVETLVHSG--LDVFAHNIETV 217 (235)
Q Consensus 178 ~~~p~~~ievl--~sdg~l~~e~l~~L~eAG--~d~ynHNLETs 217 (235)
+......+.+. -|+ .++++.++.++++| ...++--||+.
T Consensus 217 ~~~g~~~i~~~~~~p~-~i~~ell~~m~~~~~~~~~l~igiES~ 259 (429)
T TIGR00089 217 KIDGIERIRFGSSHPD-DVTDDLIELIAENPKVCKHLHLPVQSG 259 (429)
T ss_pred cCCCCCEEEECCCChh-hcCHHHHHHHHhCCCccCceeeccccC
Confidence 64211124433 232 35899999999995 88888888865
No 55
>PRK05660 HemN family oxidoreductase; Provisional
Probab=97.49 E-value=0.00048 Score=64.78 Aligned_cols=118 Identities=9% Similarity=0.141 Sum_probs=74.3
Q ss_pred CCCCCCCCcccCCCCCCCCCCchh-HHHHHHHHH-------HcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC---
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPME-PENTAKAIA-------SWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--- 180 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE-~~~~A~aa~-------~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~--- 180 (235)
-|...|.||...+.........++ .....+.++ ..+++.+.+..|+=--|+ .+.+.+.++.|++..
T Consensus 15 FC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~---~~~l~~ll~~l~~~~~~~ 91 (378)
T PRK05660 15 WCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS---AEAIQRLLDGVRARLPFA 91 (378)
T ss_pred CccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC---HHHHHHHHHHHHHhCCCC
Confidence 599999999986422111122222 222222222 133556777777532223 567777777777653
Q ss_pred CCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCcccc
Q 026651 181 PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGLVM 233 (235)
Q Consensus 181 p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y~~ 233 (235)
+++.+-+-+.-..++.+.++.|+++|++++.-.+|+.- .....+. ..|++++
T Consensus 92 ~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~~~ 144 (378)
T PRK05660 92 PDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGPDE 144 (378)
T ss_pred CCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCHHH
Confidence 33344444555678999999999999999999999985 5677777 6777664
No 56
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=97.49 E-value=0.00038 Score=64.68 Aligned_cols=118 Identities=10% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCCCCCCCcccCCCCCCC-CCC---chhHHHHHHHHHHcC---CcEEEEEeecCCCCCCCchHHHHHHHHHHHhh---CC
Q 026651 112 TCTRGCRFCAVKTSRNPA-PPD---PMEPENTAKAIASWG---VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ---KP 181 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~-~ld---~eE~~~~A~aa~~~G---l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~---~p 181 (235)
-|...|.||...+..... ..+ .....++...++..| ++.+.+.-|+=--++. +++.+.++.|++. .+
T Consensus 9 FC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~---~~l~~ll~~i~~~~~~~~ 85 (360)
T TIGR00539 9 FCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSV---EAFERLFESIYQHASLSD 85 (360)
T ss_pred CCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCH---HHHHHHHHHHHHhCCCCC
Confidence 499999999987432111 111 111112222233344 4455555554211233 4555555555543 23
Q ss_pred CceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcccc
Q 026651 182 DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLVM 233 (235)
Q Consensus 182 ~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~~ 233 (235)
++.+-+-+.-..++++.++.|+++|++++.-.+||. ++....+. ..|++++
T Consensus 86 ~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg-R~~~~~~ 137 (360)
T TIGR00539 86 DCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG-RQHSAKN 137 (360)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhC-CCCCHHH
Confidence 344555456667899999999999999999999987 56777775 6777664
No 57
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.48 E-value=0.0012 Score=63.74 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=81.3
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCC-CchHHHHHHHHHHHhhC
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQK 180 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D-~ga~~~a~~Ir~Ik~~~ 180 (235)
+-.|+-++..|+..|.||++...+ .-...+++++++.++...+.|++.+++++.+-....| .....+++.+++|.+..
T Consensus 149 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~ 228 (445)
T PRK14340 149 ISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAA 228 (445)
T ss_pred cEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcC
Confidence 456778899999999999998322 1235778999999999999999988888776321111 12245788888887644
Q ss_pred CCceEEE--eecCCCCCHHHHHHHHhc--CCCeeccCcccc
Q 026651 181 PDIMVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETV 217 (235)
Q Consensus 181 p~~~iev--l~sdg~l~~e~l~~L~eA--G~d~ynHNLETs 217 (235)
+...|.+ ..|+. +++|.++.|+++ |...+|=-||+.
T Consensus 229 ~~~rir~~~~~p~~-l~~ell~~~~~~~~g~~~l~iglQSg 268 (445)
T PRK14340 229 PEMRIRFTTSHPKD-ISESLVRTIAARPNICNHIHLPVQSG 268 (445)
T ss_pred CCcEEEEccCChhh-cCHHHHHHHHhCCCCCCeEEECCCcC
Confidence 4444444 33444 478999999986 789999888884
No 58
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.46 E-value=0.0012 Score=63.18 Aligned_cols=112 Identities=13% Similarity=0.211 Sum_probs=76.8
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCC----CCCCCchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRD----DIPDGGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd----dL~D~ga~~~a~~Ir~Ik 177 (235)
+-.|+-++..|+.+|.||+..... .....+++++++.++...+.|++.+++++.+-. |++. ...+++.++.|.
T Consensus 147 ~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~--~~~l~~Ll~~l~ 224 (439)
T PRK14328 147 VKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEE--KIDFADLLRRVN 224 (439)
T ss_pred cEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCC--CcCHHHHHHHHH
Confidence 344666789999999999987322 123567899999999888899998888876521 1211 124677777776
Q ss_pred hhCCCceEEEee--cCCCCCHHHHHHHHhcC--CCeeccCcccc
Q 026651 178 KQKPDIMVECLT--SDFRGDLRAVETLVHSG--LDVFAHNIETV 217 (235)
Q Consensus 178 ~~~p~~~ievl~--sdg~l~~e~l~~L~eAG--~d~ynHNLETs 217 (235)
+......+.+.. |+ .++++.++.|+++| ...+|--+|+.
T Consensus 225 ~~~~~~~ir~~~~~P~-~i~~ell~~l~~~~~~~~~l~iglQSg 267 (439)
T PRK14328 225 EIDGLERIRFMTSHPK-DLSDDLIEAIADCDKVCEHIHLPVQSG 267 (439)
T ss_pred hcCCCcEEEEecCChh-hcCHHHHHHHHhCCCcCceeeeCCCcC
Confidence 532112354433 43 35889999999996 78888888874
No 59
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=97.46 E-value=0.00042 Score=64.46 Aligned_cols=118 Identities=11% Similarity=0.084 Sum_probs=69.7
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc----CCcEEEEEeecCCCCCCCchHHHHHHHHHHHhh--CCCceE
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW----GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ--KPDIMV 185 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~----Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~--~p~~~i 185 (235)
-|+..|.||...+.........+.+.++.+.++.. +++.+.+..|+---+++..++ +..+.|++. .+++.+
T Consensus 12 fC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~---~L~~~i~~~~~~~~~ei 88 (374)
T PRK05799 12 FCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALE---ILKETIKKLNKKEDLEF 88 (374)
T ss_pred CccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHH---HHHHHHHhCCCCCCCEE
Confidence 49999999997632111112222344444444432 234455555542113443344 444444432 233444
Q ss_pred EEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCcccc
Q 026651 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGLVM 233 (235)
Q Consensus 186 evl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y~~ 233 (235)
-+-+.-..+++|.++.|+++|+++++-.+||.- +....+. ..|++++
T Consensus 89 tie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~-R~~~~~~ 136 (374)
T PRK05799 89 TVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG-RIHTFEE 136 (374)
T ss_pred EEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcC-CCCCHHH
Confidence 444444567999999999999999999999986 5566676 6777664
No 60
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.45 E-value=0.0015 Score=63.05 Aligned_cols=126 Identities=16% Similarity=0.218 Sum_probs=85.6
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecC----CCCCCCchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDR----DDIPDGGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~R----ddL~D~ga~~~a~~Ir~Ik 177 (235)
+-.++=+...|+-.|.||...... .....+++++++.++...+.|++.+++|+.+- .|+++ -..+.+.+++|+
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~--~~~l~~Ll~~l~ 232 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPG--RPDLADLLEAVH 232 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCC--hHHHHHHHHHHH
Confidence 445666689999999999987322 12357889999999999999999888887431 12221 245788888887
Q ss_pred hhCCCc-eEEEeecC-CCCCHHHHHHHHhc--CCCeeccCcccc-ccccccccCCCCccc
Q 026651 178 KQKPDI-MVECLTSD-FRGDLRAVETLVHS--GLDVFAHNIETV-KRLQRIVRDPRAGLV 232 (235)
Q Consensus 178 ~~~p~~-~ievl~sd-g~l~~e~l~~L~eA--G~d~ynHNLETs-~rlfp~Vcdtth~Y~ 232 (235)
+. ++. .+.+.... ..++++.++.|++. |...+|--+|+. .+-...+. ..++++
T Consensus 233 ~~-~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~-R~~t~e 290 (459)
T PRK14338 233 EI-PGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR-RGYTVA 290 (459)
T ss_pred hc-CCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhcc-CCCCHH
Confidence 63 332 34444322 34688999999985 578888888885 45555565 455543
No 61
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.35 E-value=0.002 Score=61.60 Aligned_cols=113 Identities=13% Similarity=0.207 Sum_probs=77.4
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCC-CC-CchHHHHHHHHHHHhh
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDI-PD-GGSGHFARTVKAMKKQ 179 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL-~D-~ga~~~a~~Ir~Ik~~ 179 (235)
+-.++-+...|+..|.||++...+ .....+++++++.++...+.|.+.+++|..+=... .| ++-..+.+.+++|++.
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 203 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI 203 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc
Confidence 555777789999999999987321 12467889999999999999999878776652100 11 1124577888888753
Q ss_pred CCC-ceEEE--eecCCCCCHHHHHHHHhc--CCCeeccCcccc
Q 026651 180 KPD-IMVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETV 217 (235)
Q Consensus 180 ~p~-~~iev--l~sdg~l~~e~l~~L~eA--G~d~ynHNLETs 217 (235)
++ ..|.+ .-|+.+ +++.++.|+++ +...+|--+|+.
T Consensus 204 -~~~~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~l~lglQSg 244 (418)
T PRK14336 204 -PGLLRIRFLTSHPKDI-SQKLIDAMAHLPKVCRSLSLPVQAG 244 (418)
T ss_pred -CCccEEEEeccChhhc-CHHHHHHHHhcCccCCceecCCCcC
Confidence 32 23443 345544 68899999885 478888888873
No 62
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=97.33 E-value=0.00089 Score=62.90 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=82.0
Q ss_pred eecCCCCCCCCCCcccCC-C-CCC--CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCC
Q 026651 107 MLLGDTCTRGCRFCAVKT-S-RNP--APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (235)
Q Consensus 107 mIlG~~CtedC~FCAQSt-~-~~p--~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~ 182 (235)
.-+.+.|-.+|.||--.. . ..| ..+..||+.++++.+.+.|++-+=+|.|-= |--+++..|.+.+.++ ...+
T Consensus 15 iSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEP--llR~dl~eIi~~l~~~--~~~~ 90 (322)
T COG2896 15 ISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEP--LLRKDLDEIIARLARL--GIRD 90 (322)
T ss_pred EEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCc--hhhcCHHHHHHHHhhc--ccce
Confidence 334899999999998662 1 123 278899999999999999999999999853 3334455555555443 1112
Q ss_pred ceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-cccccccc
Q 026651 183 IMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVR 225 (235)
Q Consensus 183 ~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vc 225 (235)
+ .++..|.+-...++.|++||++++|=-|+|- +.-|.+|-
T Consensus 91 i---slTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT 131 (322)
T COG2896 91 L---SLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKIT 131 (322)
T ss_pred E---EEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHh
Confidence 2 2566888889999999999999999999986 34555553
No 63
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=97.33 E-value=0.0016 Score=62.07 Aligned_cols=120 Identities=18% Similarity=0.301 Sum_probs=78.0
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecC----CCCCCCchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDR----DDIPDGGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~R----ddL~D~ga~~~a~~Ir~Ik 177 (235)
.-.++-.+..|+..|.||++.... .....+++++++.++...+.|.+.+++++.+- .|+.+ -.++.+.+++|+
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~--~~~l~~Ll~~i~ 212 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYR--ESKLVDLLEELG 212 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCC--cccHHHHHHHHH
Confidence 445677799999999999987322 13356789999998888888999888776432 12211 245777777776
Q ss_pred hhCC--CceEEEeecCCCCCHHHHHHHHhcC--CCeeccCcccc-cccccccc
Q 026651 178 KQKP--DIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETV-KRLQRIVR 225 (235)
Q Consensus 178 ~~~p--~~~ievl~sdg~l~~e~l~~L~eAG--~d~ynHNLETs-~rlfp~Vc 225 (235)
+... -+.+..+-|+ .++++.++.++++| ...+|=-||+. ++....+.
T Consensus 213 ~~~~i~~~r~~~~~p~-~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~ 264 (430)
T TIGR01125 213 KVGGIYWIRMHYLYPD-ELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR 264 (430)
T ss_pred hcCCccEEEEccCCcc-cCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC
Confidence 5421 1111112233 35899999999996 66777678875 33334444
No 64
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=97.30 E-value=0.0027 Score=60.79 Aligned_cols=121 Identities=14% Similarity=0.248 Sum_probs=80.7
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCC-----CCCCCchHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRD-----DIPDGGSGHFARTVKAM 176 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd-----dL~D~ga~~~a~~Ir~I 176 (235)
+-.++-++..|+.+|.||++.... .....+++++++.++...+.|++.+++|+.+-. |+. ++...|.+.+++|
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~-~~~~~l~~Ll~~l 223 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFE-GKTMDFSDLLREL 223 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCC-CCcccHHHHHHHH
Confidence 444666689999999999987311 123578899999999999999988788764321 121 1233577788888
Q ss_pred HhhCCCc-eEEEeec-CCCCCHHHHHHHHhcC--CCeeccCcccc-cccccccc
Q 026651 177 KKQKPDI-MVECLTS-DFRGDLRAVETLVHSG--LDVFAHNIETV-KRLQRIVR 225 (235)
Q Consensus 177 k~~~p~~-~ievl~s-dg~l~~e~l~~L~eAG--~d~ynHNLETs-~rlfp~Vc 225 (235)
.+. ++. .+.+... -..++++.++.|+++| ...+|--||+. .+.-..+.
T Consensus 224 ~~~-~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~ 276 (438)
T TIGR01574 224 STI-DGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK 276 (438)
T ss_pred Hhc-CCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC
Confidence 653 222 2333221 1346899999999999 88999888884 33333343
No 65
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.23 E-value=0.0034 Score=60.01 Aligned_cols=121 Identities=10% Similarity=0.162 Sum_probs=79.6
Q ss_pred eeeeeecCCCCCCCCCCcccCCCCC-CCCCCchhHHHHHHHHHHcCCcEEEEEeecCC----CCCC-CchHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIASWGVDYIVLTSVDRD----DIPD-GGSGHFARTVKAM 176 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~~-p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd----dL~D-~ga~~~a~~Ir~I 176 (235)
+-.++-++..|+..|.||++...+. .--.+++++++.++...+.|.+.+++++.+-. |+.. .....+++.++.|
T Consensus 127 ~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l 206 (420)
T PRK14339 127 YKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKL 206 (420)
T ss_pred eEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHH
Confidence 4456666999999999999984221 22368899999999999999998888876521 1211 1122477777777
Q ss_pred HhhCCCc-eEEEe--ecCCCCCHHHHHHHHhc--CCCeeccCcccc-cccccccc
Q 026651 177 KKQKPDI-MVECL--TSDFRGDLRAVETLVHS--GLDVFAHNIETV-KRLQRIVR 225 (235)
Q Consensus 177 k~~~p~~-~ievl--~sdg~l~~e~l~~L~eA--G~d~ynHNLETs-~rlfp~Vc 225 (235)
.+. ++. .+.+. -|+ .+++|.++.++++ |...+|--+|+. .+--..+.
T Consensus 207 ~~~-~g~~~ir~~s~~p~-~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~ 259 (420)
T PRK14339 207 SEI-EGLERIRFTSPHPL-HMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK 259 (420)
T ss_pred hcC-CCccEEEECCCChh-hcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc
Confidence 652 222 24432 222 3688999999998 478888888883 44444443
No 66
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.22 E-value=0.0031 Score=60.41 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=75.1
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecC----CCCCCCchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDR----DDIPDGGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~R----ddL~D~ga~~~a~~Ir~Ik 177 (235)
+-.++-++..|+..|.||++.... .....+++++++.++...+.|++.+++++.+= .|+.+ ..+.+.+++|.
T Consensus 146 ~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~---~~~~~Ll~~l~ 222 (437)
T PRK14331 146 YCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGD---VPFSELLYAVA 222 (437)
T ss_pred cEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCC---CCHHHHHHHHh
Confidence 344666689999999999987322 12346789999999988889998777775432 11211 24667777776
Q ss_pred hhCCCceEEEe--ecCCCCCHHHHHHHHhc--CCCeeccCcccc
Q 026651 178 KQKPDIMVECL--TSDFRGDLRAVETLVHS--GLDVFAHNIETV 217 (235)
Q Consensus 178 ~~~p~~~ievl--~sdg~l~~e~l~~L~eA--G~d~ynHNLETs 217 (235)
+......+.+. .|. .+++|.++.++++ |...+|--+|+.
T Consensus 223 ~~~g~~~i~~~~~~p~-~l~~ell~~~~~~~~~~~~l~igiqSg 265 (437)
T PRK14331 223 EIDGVERIRFTTGHPR-DLDEDIIKAMADIPQVCEHLHLPFQAG 265 (437)
T ss_pred cCCCccEEEEeccCcc-cCCHHHHHHHHcCCccCCceecccccC
Confidence 53211123333 343 3689999999998 488888889874
No 67
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.22 E-value=0.0033 Score=62.11 Aligned_cols=121 Identities=16% Similarity=0.241 Sum_probs=81.9
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCC----CCCCCchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRD----DIPDGGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd----dL~D~ga~~~a~~Ir~Ik 177 (235)
+-.++-+...|+..|.||.+...+ .....+++++++.++...+.|++.+++++.+-. |+.+. -..|++.+++|+
T Consensus 212 ~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~-~~~l~~Ll~~I~ 290 (509)
T PRK14327 212 IKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDI-EYGLGDLMDEIR 290 (509)
T ss_pred eEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCccccccc-chHHHHHHHHHH
Confidence 566777789999999999997312 123577899999999999999988777775421 22210 124677777776
Q ss_pred hh-CCCceEEEeecCCCCCHHHHHHHHhcC--CCeeccCcccc-cccccccc
Q 026651 178 KQ-KPDIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETV-KRLQRIVR 225 (235)
Q Consensus 178 ~~-~p~~~ievl~sdg~l~~e~l~~L~eAG--~d~ynHNLETs-~rlfp~Vc 225 (235)
+. .+.+.+...-|+. +++|.++.++++| ...+|-.+|+. .+--..+.
T Consensus 291 ~~~i~~ir~~s~~P~~-i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~ 341 (509)
T PRK14327 291 KIDIPRVRFTTSHPRD-FDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA 341 (509)
T ss_pred hCCCceEEEeecCccc-CCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC
Confidence 53 2223333333443 5889999999999 67899999984 44444444
No 68
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=97.21 E-value=0.0038 Score=59.59 Aligned_cols=115 Identities=15% Similarity=0.223 Sum_probs=70.0
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCC-CCCchHHHHHHHHHHHhhC
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQK 180 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL-~D~ga~~~a~~Ir~Ik~~~ 180 (235)
+-.++-++..|+.+|.||+....+ .....+++++++.++...+.|++.+++++.+-... .|.+ ..+.+.++.|.+..
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~-~~l~~Ll~~l~~i~ 211 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG-SRLPELLRLITEIP 211 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC-cCHHHHHHHHHhCC
Confidence 445666799999999999987322 12357789999999999999999888887542211 1111 13555555555421
Q ss_pred CCceEEEe--ecCC--CCCHHHHHHHHhcCC-CeeccCccccc
Q 026651 181 PDIMVECL--TSDF--RGDLRAVETLVHSGL-DVFAHNIETVK 218 (235)
Q Consensus 181 p~~~ievl--~sdg--~l~~e~l~~L~eAG~-d~ynHNLETs~ 218 (235)
....+.+. -|.. ..+++.++.++.+|+ ..+|--||+.-
T Consensus 212 ~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgs 254 (420)
T TIGR01578 212 GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGS 254 (420)
T ss_pred CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCC
Confidence 12233433 3332 235666666665553 56677777653
No 69
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=97.19 E-value=0.0028 Score=60.95 Aligned_cols=127 Identities=12% Similarity=0.192 Sum_probs=78.5
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecC----CCCCC------Cc--hHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDR----DDIPD------GG--SGHF 169 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~R----ddL~D------~g--a~~~ 169 (235)
.-.++..+..|+.+|.||+....+ ....-+++++++.++...+.|.+.+++++.+- -|+.. +. -.++
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~ 218 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRM 218 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHH
Confidence 345778899999999999987321 12357789999999998889999888886541 11110 10 2468
Q ss_pred HHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC-eeccCcccc-ccccccccCCCCcc
Q 026651 170 ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETV-KRLQRIVRDPRAGL 231 (235)
Q Consensus 170 a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d-~ynHNLETs-~rlfp~Vcdtth~Y 231 (235)
.+.+++|.+...-+.+..+.|.+ .++|-++.+++.++. .+|==+|+. .+-...+. ..++|
T Consensus 219 ~~Ll~~l~~~~~~~r~~~~~p~~-~~dell~~m~~g~~~~~l~IglESgs~~vLk~m~-r~~~~ 280 (440)
T PRK14862 219 TDLCEALGELGAWVRLHYVYPYP-HVDEVIPLMAEGKILPYLDIPFQHASPRVLKRMK-RPASV 280 (440)
T ss_pred HHHHHHHHhcCCEEEEecCCCCc-CCHHHHHHHhcCCCccccccccccCCHHHHHhcC-CCCCH
Confidence 88888887652112333445655 456888888883332 233346754 44444444 33443
No 70
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.14 E-value=0.0063 Score=58.24 Aligned_cols=112 Identities=15% Similarity=0.229 Sum_probs=75.3
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecC-----CCCCCCchHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDR-----DDIPDGGSGHFARTVKAM 176 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~R-----ddL~D~ga~~~a~~Ir~I 176 (235)
+..++-++..|+..|.||+....+ .....+++++++.++...+.|++.+++++.+- +++ ++....+.+.+++|
T Consensus 147 ~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~-~~~~~~l~~Ll~~l 225 (444)
T PRK14325 147 PSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGP-DGEIADFAELLRLV 225 (444)
T ss_pred ceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCC-CCCcchHHHHHHHH
Confidence 334555689999999999987311 11247789999999998889999877776542 111 11234677888887
Q ss_pred HhhCCCc-eEEE--eecCCCCCHHHHHHHHhcC--CCeeccCcccc
Q 026651 177 KKQKPDI-MVEC--LTSDFRGDLRAVETLVHSG--LDVFAHNIETV 217 (235)
Q Consensus 177 k~~~p~~-~iev--l~sdg~l~~e~l~~L~eAG--~d~ynHNLETs 217 (235)
.+. ++. .|.+ .-|+ .++++.++.++++| ...+|-=||+.
T Consensus 226 ~~~-~~~~~ir~~~~~p~-~~~~ell~~l~~~~~~~~~l~igiqSg 269 (444)
T PRK14325 226 AAI-DGIERIRYTTSHPR-DFTDDLIEAYADLPKLVPFLHLPVQSG 269 (444)
T ss_pred Hhc-CCccEEEEccCCcc-cCCHHHHHHHHcCCcccCceeccCCcC
Confidence 653 222 2443 3344 35899999999986 77777777764
No 71
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=97.12 E-value=0.0042 Score=57.87 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=71.0
Q ss_pred CCCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHH-cCCcEEEEEeecCCCCCCC
Q 026651 87 CPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDG 164 (235)
Q Consensus 87 CPNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt~~~p-~~ld~eE~~~~A~aa~~-~Gl~y~VVTSg~RddL~D~ 164 (235)
=|.+..-|.. .+.+ .+.+.|.-+|+||..+..... .....+++.++.+.+++ .|++.+++|.|+=-.++|.
T Consensus 104 ~~gl~hky~~------rvll-~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~ 176 (331)
T TIGR00238 104 VPGLTHRYVN------RALF-LVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKDH 176 (331)
T ss_pred CCCceeecCC------cEEE-EeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCHH
Confidence 3677777765 3543 346679999999998631111 11225666666666654 4678888888764333443
Q ss_pred chHHHHHHHHHHHhhCCC---ceEEEeecCC---CCCHHHHHHHHhcCCCe-----eccCccc
Q 026651 165 GSGHFARTVKAMKKQKPD---IMVECLTSDF---RGDLRAVETLVHSGLDV-----FAHNIET 216 (235)
Q Consensus 165 ga~~~a~~Ir~Ik~~~p~---~~ievl~sdg---~l~~e~l~~L~eAG~d~-----ynHNLET 216 (235)
.+.+.++.|++. |. +.+..-++.. .++++.++.|+++|+.. +||.-|+
T Consensus 177 ---~L~~ll~~L~~i-~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei 235 (331)
T TIGR00238 177 ---ELEWLLKRLEEI-PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI 235 (331)
T ss_pred ---HHHHHHHHHHhc-CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC
Confidence 355555565542 22 2233333332 36899999999999654 3665444
No 72
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=97.06 E-value=0.0026 Score=59.11 Aligned_cols=114 Identities=15% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHH-HcCCcEEEEEeecCCCCCCCc
Q 026651 88 PNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIA-SWGVDYIVLTSVDRDDIPDGG 165 (235)
Q Consensus 88 PNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~-~~Gl~y~VVTSg~RddL~D~g 165 (235)
|.+..-|.+ .+ +++..+.|.-.|+||..+... ....+..+++.++...++ ..|++.+++|.|+=-.++|..
T Consensus 88 ~gl~hkY~~------r~-l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d~~ 160 (321)
T TIGR03821 88 PGLLHKYHG------RV-LLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKDHR 160 (321)
T ss_pred CeeeeecCC------EE-EEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCchH
Confidence 445556654 23 445788899999999976321 122455567777555555 447888888887542224433
Q ss_pred hHHHHHHHHHHHhhCCCceEE----EeecCCCCCHHHHHHHHhcCCCee
Q 026651 166 SGHFARTVKAMKKQKPDIMVE----CLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 166 a~~~a~~Ir~Ik~~~p~~~ie----vl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+..+.+.++.|.. ...+.|. +..|. +++++.++.|+++|+..+
T Consensus 161 L~~ll~~l~~i~~-~~~iri~tr~~~~~p~-rit~el~~~L~~~~~~~~ 207 (321)
T TIGR03821 161 LDWLLNLLEQIPH-LKRLRIHTRLPVVIPD-RITSGLCDLLANSRLQTV 207 (321)
T ss_pred HHHHHHHHHhCCC-CcEEEEecCcceeeHH-HhhHHHHHHHHhcCCcEE
Confidence 5566655555432 1122333 24444 678999999999997665
No 73
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.01 E-value=0.0068 Score=59.51 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=76.1
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCC----CCCCCchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRD----DIPDGGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd----dL~D~ga~~~a~~Ir~Ik 177 (235)
+..++.++..|+..|.||++...+ .....+++++++.++...+.|++.+++++.+-. |+.+ -..|++.++.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~--~~~l~~Ll~~l~ 234 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGD--RGAFSKLLRACG 234 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCC--HHHHHHHHHHHH
Confidence 445677799999999999997322 123577899999999999999998888776421 1222 245677777765
Q ss_pred hhCC--CceEEEeecCCCCCHHHHHHHHhcC--CCeeccCcccc
Q 026651 178 KQKP--DIMVECLTSDFRGDLRAVETLVHSG--LDVFAHNIETV 217 (235)
Q Consensus 178 ~~~p--~~~ievl~sdg~l~~e~l~~L~eAG--~d~ynHNLETs 217 (235)
+..+ .+.+...-|+. +++|.++.|+++| ...+|-=||+.
T Consensus 235 ~i~~l~~ir~~~~~p~~-~~~ell~~m~~~g~~~~~l~lglQSg 277 (502)
T PRK14326 235 EIDGLERVRFTSPHPAE-FTDDVIEAMAETPNVCPQLHMPLQSG 277 (502)
T ss_pred hcCCccEEEEeccChhh-CCHHHHHHHHhcCCcCCcEEeccCCC
Confidence 4321 12222223333 5899999999998 67788778874
No 74
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.93 E-value=0.011 Score=56.54 Aligned_cols=108 Identities=16% Similarity=0.213 Sum_probs=70.9
Q ss_pred eeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCC----CCCCCchHHHHHHHHHHHhhC
Q 026651 106 IMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRD----DIPDGGSGHFARTVKAMKKQK 180 (235)
Q Consensus 106 ~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd----dL~D~ga~~~a~~Ir~Ik~~~ 180 (235)
++-+...|+..|.||++.... .....+++++++.++...+.|++.++++..+-+ |+.+ ...+++.++.+.+.
T Consensus 143 ~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~--~~~l~~Ll~~~~~~- 219 (434)
T PRK14330 143 WVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKD--GSSLAKLLEEASKI- 219 (434)
T ss_pred EEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCC--CccHHHHHHHHHhc-
Confidence 344469999999999987322 123577899999988888889998777654321 2222 13466666666543
Q ss_pred CCc-eEEEe--ecCCCCCHHHHHHHHhcC--CCeeccCcccc
Q 026651 181 PDI-MVECL--TSDFRGDLRAVETLVHSG--LDVFAHNIETV 217 (235)
Q Consensus 181 p~~-~ievl--~sdg~l~~e~l~~L~eAG--~d~ynHNLETs 217 (235)
++. .+.+. -|+ .++++.++.++++| ...+|--+|+.
T Consensus 220 ~~~~~~~~~~~~p~-~~~~ell~~l~~~~~~~~~l~iglQSg 260 (434)
T PRK14330 220 EGIERIWFLTSYPT-DFSDELIEVIANSPKVAKSIHLPVQSG 260 (434)
T ss_pred CCceEEEEecCChh-hcCHHHHHHHhcCCcccCceecCcCCC
Confidence 222 23332 233 34789999999998 67888888884
No 75
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.89 E-value=0.0045 Score=59.01 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=70.2
Q ss_pred CCCCCCCCCCcccCCCCC------CCCCCchhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCC
Q 026651 110 GDTCTRGCRFCAVKTSRN------PAPPDPMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD 182 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~------p~~ld~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~ 182 (235)
+..|--+|-||++..+-. .-.+|+|-.++--+.+.+..-+ --.---|-++ ..---|+.+.|+++|+. |.
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGE---P~lYP~l~~lVqalk~~-~~ 189 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGE---PLLYPHLVDLVQALKEH-KG 189 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCC---CccchhHHHHHHHHhcC-CC
Confidence 568999999999983211 1258888888776666655422 1122222222 22345899999999874 54
Q ss_pred ce-EEEeecCCCCCHHHHHHHHhcCCCeeccCcccc
Q 026651 183 IM-VECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (235)
Q Consensus 183 ~~-ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs 217 (235)
.. |-+=+-..+|+++.+++|.+||+||+|=-+.+.
T Consensus 190 v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aL 225 (414)
T COG2100 190 VEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDAL 225 (414)
T ss_pred ceEEEEeeCceeccHHHHHHHHHhCCceEEeecccC
Confidence 43 334456677899999999999999999776653
No 76
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.87 E-value=0.012 Score=56.80 Aligned_cols=122 Identities=13% Similarity=0.204 Sum_probs=78.3
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCC--CC--CchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDI--PD--GGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL--~D--~ga~~~a~~Ir~Ik 177 (235)
+-.++-+...|+.+|.||++.... .....+++++++.++...+.|++.+++++.+=... .| +....+++.+++|.
T Consensus 152 ~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~ 231 (455)
T PRK14335 152 FQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIV 231 (455)
T ss_pred ceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHH
Confidence 444555668999999999987312 12246789999998888889999888877542110 01 11236788888885
Q ss_pred hh---CCCc-eEEEeecC-CCCCHHHHHHHHh--cCCCeeccCcccc-ccccccc
Q 026651 178 KQ---KPDI-MVECLTSD-FRGDLRAVETLVH--SGLDVFAHNIETV-KRLQRIV 224 (235)
Q Consensus 178 ~~---~p~~-~ievl~sd-g~l~~e~l~~L~e--AG~d~ynHNLETs-~rlfp~V 224 (235)
+. .+.. -+-+..+. ..++++.++.|++ +|...+|--+|+. .+--..+
T Consensus 232 ~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m 286 (455)
T PRK14335 232 RRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRM 286 (455)
T ss_pred HhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHc
Confidence 32 1222 12222222 2258899999998 5899999999984 4444333
No 77
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=96.87 E-value=0.0015 Score=51.46 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEE
Q 026651 110 GDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE 186 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~---p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ie 186 (235)
...|.-+|.||..+.... ...++.+.+.++.+.+.+.++..+.++.|.= +-....+.+.+.++.+++..+ ..-
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEP--ll~~~~~~l~~i~~~~k~~~~--~~~ 87 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEP--LLHENYDELLEILKYIKEKFP--KKI 87 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTG--GGHHSHHHHHHHHHHHHHTT---SEE
T ss_pred cCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCe--eeeccHhHHHHHHHHHHHhCC--CCe
Confidence 555999999998773221 1246777777878888888887777887642 221246899999999999875 233
Q ss_pred EeecCCCCCHHHHHH
Q 026651 187 CLTSDFRGDLRAVET 201 (235)
Q Consensus 187 vl~sdg~l~~e~l~~ 201 (235)
++.+-|....+.+.+
T Consensus 88 ~~~tng~~~~~~~~~ 102 (139)
T PF13353_consen 88 IILTNGYTLDELLDE 102 (139)
T ss_dssp EEEETT--HHHHHHH
T ss_pred EEEECCCchhHHHhH
Confidence 455666665555543
No 78
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.86 E-value=0.013 Score=56.33 Aligned_cols=110 Identities=13% Similarity=0.184 Sum_probs=74.4
Q ss_pred eeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecC----CCCCCCchHHHHHHHHHHHhh
Q 026651 105 TIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDR----DDIPDGGSGHFARTVKAMKKQ 179 (235)
Q Consensus 105 T~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~R----ddL~D~ga~~~a~~Ir~Ik~~ 179 (235)
.++=+...|+..|.||++...+ .....+++++++.++...+.|++.+++++.+- .|..+. -..+++.+++|.+.
T Consensus 150 a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~-~~~l~~Ll~~l~~~ 228 (446)
T PRK14337 150 AFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGD-GTSFAQLLHKVAAL 228 (446)
T ss_pred EEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCC-CccHHHHHHHHHhc
Confidence 3455579999999999986322 12357889999999999999999888877542 111111 13577777777653
Q ss_pred CCCc-eEEE--eecCCCCCHHHHHHHHhc--CCCeeccCcccc
Q 026651 180 KPDI-MVEC--LTSDFRGDLRAVETLVHS--GLDVFAHNIETV 217 (235)
Q Consensus 180 ~p~~-~iev--l~sdg~l~~e~l~~L~eA--G~d~ynHNLETs 217 (235)
++. .|.+ +-|+. ++++.++.+++. |...+|--|||.
T Consensus 229 -~g~~~ir~~~~~p~~-i~~ell~~l~~~~~~~~~l~iglQSg 269 (446)
T PRK14337 229 -PGLERLRFTTPHPKD-IAPEVIEAFGELPNLCPRLHLPLQSG 269 (446)
T ss_pred -CCCcEEEEccCCccc-CCHHHHHHHHhCCcccCeEEECCCCC
Confidence 222 3443 23443 468899999984 578999888886
No 79
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.78 E-value=0.0081 Score=57.81 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=72.8
Q ss_pred eeeecCCCCCCCCCCcccCCCC-CCCCCCchhHHHHHHHHHHcCCcEEEEEeecCC----CCCCC-----chHHHHHHHH
Q 026651 105 TIMLLGDTCTRGCRFCAVKTSR-NPAPPDPMEPENTAKAIASWGVDYIVLTSVDRD----DIPDG-----GSGHFARTVK 174 (235)
Q Consensus 105 T~mIlG~~CtedC~FCAQSt~~-~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd----dL~D~-----ga~~~a~~Ir 174 (235)
.++-+...|+.+|.||++...+ .....+++++++.++...+.|++.+++++.+-+ |+... -...+++.++
T Consensus 150 a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~ 229 (448)
T PRK14333 150 AWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLY 229 (448)
T ss_pred EEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHH
Confidence 3555689999999999987321 123467789999999888889997777764311 12110 0136888888
Q ss_pred HHHhhCCCc-eEEEeec-CCCCCHHHHHHHHhc--CCCeeccCccccc
Q 026651 175 AMKKQKPDI-MVECLTS-DFRGDLRAVETLVHS--GLDVFAHNIETVK 218 (235)
Q Consensus 175 ~Ik~~~p~~-~ievl~s-dg~l~~e~l~~L~eA--G~d~ynHNLETs~ 218 (235)
+|++. ++. .|.+..+ -..++++.++.++++ |...+|=-+|+.-
T Consensus 230 ~i~~~-~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgs 276 (448)
T PRK14333 230 YIHDV-EGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGD 276 (448)
T ss_pred HHHhc-CCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCC
Confidence 88763 332 2333211 123568888888886 4677777777643
No 80
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=96.76 E-value=0.0071 Score=56.33 Aligned_cols=115 Identities=7% Similarity=0.154 Sum_probs=63.7
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHH----H---cCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhh-CC--
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA----S---WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ-KP-- 181 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~----~---~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~-~p-- 181 (235)
-|+..|.||+..+......+..+.+..+.+..+ . .+++.+.+.-|+=--|+. +++.+.++.|++. .+
T Consensus 9 FC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~---~~l~~ll~~i~~~~~~~~ 85 (350)
T PRK08446 9 FCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSA---KFYEPIFEIISPYLSKDC 85 (350)
T ss_pred CccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhcCCCc
Confidence 399999999976321111111112222222222 1 234455555554222344 4455555555443 22
Q ss_pred CceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCccc
Q 026651 182 DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGLV 232 (235)
Q Consensus 182 ~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y~ 232 (235)
++++|+ .-..++++.++.|+++|++|+.=.+|+.- ..-..+- ..|+++
T Consensus 86 eitiE~--nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg-R~~~~~ 134 (350)
T PRK08446 86 EITTEA--NPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG-RIHSQK 134 (350)
T ss_pred eEEEEe--CCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHH
Confidence 345553 33467899999999999999999998874 4444444 556554
No 81
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=96.76 E-value=0.0083 Score=55.55 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=74.3
Q ss_pred ChHhhhhhcCC--CCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCC--CCC-CCCCCchhHHHHHHHHHH-cCCcE
Q 026651 77 KLNTVCEEAQC--PNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKT--SRN-PAPPDPMEPENTAKAIAS-WGVDY 150 (235)
Q Consensus 77 ~L~TVCeeA~C--PNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt--~~~-p~~ld~eE~~~~A~aa~~-~Gl~y 150 (235)
..+.+.|+... |.+-.-|-. .+.++ +.+.|.-.|+||..+. +.. ...++.+++.++....++ .|+..
T Consensus 67 ~~dp~~e~~~~~~~gl~hkyp~------rvll~-vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~ 139 (321)
T TIGR03822 67 RADPIGDDAHSPVPGIVHRYPD------RVLLK-PVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWE 139 (321)
T ss_pred CCCCcccccCCCCCCcccCCCC------EEEEE-ecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccE
Confidence 44556665543 344445543 45444 4899999999999873 111 134667888887776764 47888
Q ss_pred EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCce-EEEee-----cCCCCCHHHHHHHHhcCCC
Q 026651 151 IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM-VECLT-----SDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 151 ~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~-ievl~-----sdg~l~~e~l~~L~eAG~d 208 (235)
+++|.|+=--+++ ..+.+.++.+++ .|.+. +.+-+ .-..++++.++.|+++|..
T Consensus 140 VilSGGDPl~~~~---~~L~~ll~~l~~-i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~ 199 (321)
T TIGR03822 140 VILTGGDPLVLSP---RRLGDIMARLAA-IDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT 199 (321)
T ss_pred EEEeCCCcccCCH---HHHHHHHHHHHh-CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc
Confidence 8888886422233 456666666665 33321 22221 1134689999999999954
No 82
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=96.76 E-value=0.013 Score=56.95 Aligned_cols=134 Identities=13% Similarity=0.196 Sum_probs=83.7
Q ss_pred HhhhhhcC--CCCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCC--CCCCCCCCchhHHHHHHHHHH-cCCcEEEE
Q 026651 79 NTVCEEAQ--CPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKT--SRNPAPPDPMEPENTAKAIAS-WGVDYIVL 153 (235)
Q Consensus 79 ~TVCeeA~--CPNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt--~~~p~~ld~eE~~~~A~aa~~-~Gl~y~VV 153 (235)
+-+-|+.. =|.+..-|-. .+.++ +.+.|+-.|+||-.+. +.....++.+++.+....+++ .+++-+++
T Consensus 89 Dpl~E~~~spvpGl~HrYp~------rvLl~-vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlL 161 (417)
T TIGR03820 89 DPLAEDEDSPVPGITHRYPD------RVLFL-VSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLL 161 (417)
T ss_pred CcccccccCCCCCceeccCC------EEEEE-EcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34555444 3577777775 34444 3899999999999873 221235677888888777776 47889999
Q ss_pred EeecCCCCCCCchHHHHHHHHHHHhhCCCce---EEEeecCC---CCCHHHHHHHHhcCCCeeccCcccccccccc
Q 026651 154 TSVDRDDIPDGGSGHFARTVKAMKKQKPDIM---VECLTSDF---RGDLRAVETLVHSGLDVFAHNIETVKRLQRI 223 (235)
Q Consensus 154 TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~---ievl~sdg---~l~~e~l~~L~eAG~d~ynHNLETs~rlfp~ 223 (235)
|-|+---++|.-++. .++.|++ .|.+. +..=+|.. +++.+.++.|++.++..++=-++-.+.+++.
T Consensus 162 SGGDPLll~d~~L~~---iL~~L~~-IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Eit~~ 233 (417)
T TIGR03820 162 SGGDPLLLSDDYLDW---ILTELRA-IPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREITAS 233 (417)
T ss_pred eCCccccCChHHHHH---HHHHHhh-cCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhChHH
Confidence 999875446633333 4455554 33332 33333333 4789999999999975543333333344443
No 83
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=96.74 E-value=0.0055 Score=58.89 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=69.5
Q ss_pred CCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHH--------cCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC
Q 026651 110 GDTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIAS--------WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~p-~~ld~eE~~~~A~aa~~--------~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~ 180 (235)
=--|+..|.||...+.... .....+.+.++.+.++. .+++.+.+.-|+=--|+ .+++.+.++.|++..
T Consensus 56 iPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~---~~~l~~ll~~i~~~~ 132 (455)
T TIGR00538 56 IPFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS---PEQISRLMKLIRENF 132 (455)
T ss_pred eCCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC---HHHHHHHHHHHHHhC
Confidence 3569999999998732211 11111123333222222 13445555555421122 567777777777643
Q ss_pred ---CCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCccc
Q 026651 181 ---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGLV 232 (235)
Q Consensus 181 ---p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y~ 232 (235)
+.+.+.+-+.-..++++.++.|+++|+.++.=-+||.- .....+. ..|+++
T Consensus 133 ~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~~~ 187 (455)
T TIGR00538 133 PFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQPEE 187 (455)
T ss_pred CCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCCHH
Confidence 23333333444567999999999999999999999874 4555555 455544
No 84
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=96.69 E-value=0.0061 Score=58.66 Aligned_cols=116 Identities=15% Similarity=0.217 Sum_probs=67.1
Q ss_pred CCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHH----H----cCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC-
Q 026651 111 DTCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIA----S----WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK- 180 (235)
Q Consensus 111 ~~CtedC~FCAQSt~~~p-~~ld~eE~~~~A~aa~----~----~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~- 180 (235)
--|+..|.||.-...... .....+.+.++.+.++ . .++..+.++.|+---++ .+++.+.++.|++..
T Consensus 57 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~---~~~l~~ll~~l~~~~~ 133 (453)
T PRK09249 57 PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLS---PEQLRRLMALLREHFN 133 (453)
T ss_pred CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCC---HHHHHHHHHHHHHhCC
Confidence 569999999986532111 1111112222222221 1 23445666666532223 456777777776653
Q ss_pred --C--CceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCccc
Q 026651 181 --P--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGLV 232 (235)
Q Consensus 181 --p--~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y~ 232 (235)
+ ++++| +.-..+++|.++.|+++|+.++.--+|+.- .....+. ..|+++
T Consensus 134 ~~~~~e~tie--~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~~~ 187 (453)
T PRK09249 134 FAPDAEISIE--IDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQPFE 187 (453)
T ss_pred CCCCCEEEEE--ecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHH
Confidence 2 23445 344457999999999999999999999874 3444555 556554
No 85
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=96.64 E-value=0.018 Score=51.26 Aligned_cols=110 Identities=18% Similarity=0.347 Sum_probs=76.5
Q ss_pred cCCCCCCCCCCcccCCCCC-CCCCCchhHHHHHHHHHHcC-CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEE
Q 026651 109 LGDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVE 186 (235)
Q Consensus 109 lG~~CtedC~FCAQSt~~~-p~~ld~eE~~~~A~aa~~~G-l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ie 186 (235)
+...|.-+|.||..+.... +..+..++..++-..+++.| ...++++-|.- +-. ..+.+.++.+++. +.+.+-
T Consensus 25 ~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEP--ll~---~d~~ei~~~~~~~-~~~~~~ 98 (347)
T COG0535 25 LTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEP--LLR---PDLLEIVEYARKK-GGIRVS 98 (347)
T ss_pred eccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCc--ccc---ccHHHHHHHHhhc-CCeEEE
Confidence 5899999999996664432 46788899988888889998 44455555543 332 4566666677654 334443
Q ss_pred EeecCC-CCCHHHHHHHHhcCCCeeccCccccc-ccccccc
Q 026651 187 CLTSDF-RGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVR 225 (235)
Q Consensus 187 vl~sdg-~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vc 225 (235)
+.+.| +++++.++.|+++|++.+.--|+... ..+..++
T Consensus 99 -~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~r 138 (347)
T COG0535 99 -LSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIR 138 (347)
T ss_pred -EeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhc
Confidence 33444 57889999999999999998888755 3334444
No 86
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.62 E-value=0.021 Score=54.91 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=74.5
Q ss_pred eeeeeecCCCCCCCCCCcccCCCCC-CCCCCchhHHHHHHHHHHcCCcEEEEEeecC----CCCCCCchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIASWGVDYIVLTSVDR----DDIPDGGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~~-p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~R----ddL~D~ga~~~a~~Ir~Ik 177 (235)
+..+.-++..|+..|.||....... ....+.+++++.++...+.|++.+++|+.+= .|.+. ...+.+.++.|+
T Consensus 138 ~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~--~~~~~~Ll~~l~ 215 (440)
T PRK14334 138 LSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPG--FPSFAELLRLVG 215 (440)
T ss_pred eEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCC--cCCHHHHHHHHH
Confidence 5567777999999999999874221 2246789999999999899999888876331 11111 123555666665
Q ss_pred hhCCCceEEEe--ecCCCCCHHHHHHHHhc--CCCeeccCcccc
Q 026651 178 KQKPDIMVECL--TSDFRGDLRAVETLVHS--GLDVFAHNIETV 217 (235)
Q Consensus 178 ~~~p~~~ievl--~sdg~l~~e~l~~L~eA--G~d~ynHNLETs 217 (235)
+.. --.+.+. -|+ .++++.++.|+++ |..++|=-||+.
T Consensus 216 ~~~-i~~ir~~~~~p~-~i~~ell~~l~~~~~g~~~l~igvQSg 257 (440)
T PRK14334 216 ASG-IPRVKFTTSHPM-NFTDDVIAAMAETPAVCEYIHLPVQSG 257 (440)
T ss_pred hcC-CcEEEEccCCcc-cCCHHHHHHHHhcCcCCCeEEeccccC
Confidence 431 0124443 243 3589999999995 589999888886
No 87
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=96.58 E-value=0.046 Score=50.55 Aligned_cols=124 Identities=17% Similarity=0.241 Sum_probs=73.3
Q ss_pred eeeecCCCCCC----CCCCcccCCCCCCCCCCchhHHHHHHHHH-HcCCc---EE--EEEeecCCCCCCCchHHHHHHHH
Q 026651 105 TIMLLGDTCTR----GCRFCAVKTSRNPAPPDPMEPENTAKAIA-SWGVD---YI--VLTSVDRDDIPDGGSGHFARTVK 174 (235)
Q Consensus 105 T~mIlG~~Cte----dC~FCAQSt~~~p~~ld~eE~~~~A~aa~-~~Gl~---y~--VVTSg~RddL~D~ga~~~a~~Ir 174 (235)
|+++-+..|+- +|.||+..... ....+++.+.+..+.+. ..+.+ |. +.|||.=-|...-..+.+.+.++
T Consensus 17 ~~i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~ 95 (313)
T TIGR01210 17 TIILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFE 95 (313)
T ss_pred EEEEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHH
Confidence 34444999999 59999865322 22357777776554444 33433 23 35776321111112445566666
Q ss_pred HHHhhC--CCceEEEeecCCCCCHHHHHHHHhcCCC-eeccCcccc-ccccc-cccCCCCccc
Q 026651 175 AMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETV-KRLQR-IVRDPRAGLV 232 (235)
Q Consensus 175 ~Ik~~~--p~~~ievl~sdg~l~~e~l~~L~eAG~d-~ynHNLETs-~rlfp-~Vcdtth~Y~ 232 (235)
+|++.. ..+.+|. -|+ .+++|.|+.|+++|.. ++.--+||. ++.-. .|. ..|+.+
T Consensus 96 ~l~~~~~~~~i~~es-rpd-~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg~t~~ 155 (313)
T TIGR01210 96 KIAQRDNLKEVVVES-RPE-FIDEEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KGSTFE 155 (313)
T ss_pred HHHhcCCcceEEEEe-CCC-cCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CCCCHH
Confidence 666531 1245554 344 4589999999999998 799999994 44432 354 555543
No 88
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.45 E-value=0.041 Score=52.00 Aligned_cols=103 Identities=16% Similarity=0.271 Sum_probs=63.9
Q ss_pred CCceeeeeeecC-----------CCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH------cCCcEEEEEeecCCCC
Q 026651 99 DGIATATIMLLG-----------DTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS------WGVDYIVLTSVDRDDI 161 (235)
Q Consensus 99 ~~~~taT~mIlG-----------~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~------~Gl~y~VVTSg~RddL 161 (235)
||..+-|++|.. -.|+.+|.||+-........++.+|+++....++. .|++.+|++++ +.-|
T Consensus 94 dg~~ie~V~~~~~~~~t~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~Gm-GEPL 172 (356)
T PRK14455 94 DGYLIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGI-GEPF 172 (356)
T ss_pred CCCEEEEEEEEecCCceEEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecc-cccc
Confidence 566666666653 38999999998664322446999999997665432 24556666662 3223
Q ss_pred CCCchHHHHHHHHHHHhhCCCc-----eEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 162 PDGGSGHFARTVKAMKKQKPDI-----MVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 162 ~D~ga~~~a~~Ir~Ik~~~p~~-----~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
-. .+.+.+.++.+++.. +. .+-+ ...|.. ..+..|.+.++.
T Consensus 173 ln--~~~v~~~l~~l~~~~-g~~~s~r~itv-sT~G~~--~~i~~l~d~~l~ 218 (356)
T PRK14455 173 DN--YDNVMDFLRIINDDK-GLAIGARHITV-STSGIA--PKIYDFADEGLQ 218 (356)
T ss_pred CC--HHHHHHHHHHHhccc-CcccCCCceEE-EecCch--HhHHHHHhcccC
Confidence 33 678888888887631 11 2222 223443 467788888765
No 89
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=96.35 E-value=0.012 Score=56.72 Aligned_cols=118 Identities=17% Similarity=0.231 Sum_probs=68.3
Q ss_pred CCCCCCCCCCcccCCCCC-CCCCCchhHHHHHHHHH----Hc----CCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC
Q 026651 110 GDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIA----SW----GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~-p~~ld~eE~~~~A~aa~----~~----Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~ 180 (235)
=--|+..|.||...+... ......+.+..+.+.++ .. ++..+.+.-|+=--|+ .+++.+.++.|++..
T Consensus 57 IPfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---~~~l~~ll~~i~~~~ 133 (453)
T PRK13347 57 VPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---PDQFERLMAALRDAF 133 (453)
T ss_pred eCCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC---HHHHHHHHHHHHHhC
Confidence 345999999998763221 11111111222222222 22 2334555555421123 467777777777643
Q ss_pred ---C--CceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCcccc
Q 026651 181 ---P--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGLVM 233 (235)
Q Consensus 181 ---p--~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y~~ 233 (235)
+ ++++| +.-..+++|.++.|+++|++++.=.+|+.- .....+. ..|++++
T Consensus 134 ~~~~~~e~tie--~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~-R~~~~~~ 189 (453)
T PRK13347 134 DFAPEAEIAVE--IDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAIN-RIQPEEM 189 (453)
T ss_pred CCCCCceEEEE--eccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHH
Confidence 2 23444 334456999999999999999999999873 4555565 5566543
No 90
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.042 Score=53.73 Aligned_cols=108 Identities=20% Similarity=0.312 Sum_probs=69.5
Q ss_pred eeeeeecCCCCCCCCCCcccCCCCC-CCCCCchhHHHHHHHHHHcCCcEEEEEeecC----CCCCCCchHHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSRN-PAPPDPMEPENTAKAIASWGVDYIVLTSVDR----DDIPDGGSGHFARTVKAMK 177 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~~-p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~R----ddL~D~ga~~~a~~Ir~Ik 177 (235)
+..|.=+...|...|.||.+...+- -.-.+++++++.|+...+.|++-+++|+.+- .|+.++ -..|++.+++|-
T Consensus 144 ~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~-~~~l~~Ll~~l~ 222 (437)
T COG0621 144 VRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGG-KPNLADLLRELS 222 (437)
T ss_pred eEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCC-ccCHHHHHHHHh
Confidence 5666666789999999999994331 2357899999999999999999888877653 344432 456888888887
Q ss_pred hhCCC-ceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 178 KQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 178 ~~~p~-~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
+ -|+ --|.+-.+.=.--.+.|-.+.+.++.++.|
T Consensus 223 ~-I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~ 257 (437)
T COG0621 223 K-IPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPH 257 (437)
T ss_pred c-CCCceEEEEecCCchhcCHHHHHHHhcCCccccc
Confidence 6 343 233333332221123444444444555544
No 91
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=96.23 E-value=0.017 Score=52.80 Aligned_cols=118 Identities=16% Similarity=0.162 Sum_probs=82.1
Q ss_pred eeeeeeecCCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCC
Q 026651 102 ATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (235)
Q Consensus 102 ~taT~mIlG~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p 181 (235)
++-.+.+-|..|.-||.-|+-..-..=-..+.+++++...++.+.|..-+++..| .|.--+==++.|.+.++++|+..
T Consensus 10 k~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGG-m~srg~VPl~kf~d~lK~lke~~- 87 (275)
T COG1856 10 KFISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGG-MDSRGKVPLWKFKDELKALKERT- 87 (275)
T ss_pred CCceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCC-cCCCCCccHHHHHHHHHHHHHhh-
Confidence 3667888899999999999955111011355577777777888888665555444 43222224899999999999864
Q ss_pred CceEEEeecCCCCCHHHHHHHHhcCCCeeccCc----ccccccccc
Q 026651 182 DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI----ETVKRLQRI 223 (235)
Q Consensus 182 ~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNL----ETs~rlfp~ 223 (235)
.+-+-+--|..+++.+++|+++++|+..-.+ |+.++-|..
T Consensus 88 --~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l 131 (275)
T COG1856 88 --GLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKL 131 (275)
T ss_pred --CeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcC
Confidence 4555566688899999999999999864322 555566654
No 92
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=96.22 E-value=0.046 Score=47.18 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=70.2
Q ss_pred eeeecCCCCCCCCCCcccCCCC---CCCCCCchhHHHHHHHHHHcCC---cEEEEEeecCCCCCCCchHHHHHHHHHHHh
Q 026651 105 TIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASWGV---DYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (235)
Q Consensus 105 T~mIlG~~CtedC~FCAQSt~~---~p~~ld~eE~~~~A~aa~~~Gl---~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~ 178 (235)
.++|....|+=+|.||...... ....++++++.+.+......+. ..+.+| | +.-+-. .+.+.+.++.+++
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~-G-GEPll~--~~~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFS-G-GEPLLQ--PEFLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEe-C-cccccC--HHHHHHHHHHHHH
Confidence 5568888999999999865211 1135788888887776655432 244445 4 322333 3456688888887
Q ss_pred hCCCceEEEeecCCCCC--HHHHHHHHhcCCCeeccCcccc-cccccccc
Q 026651 179 QKPDIMVECLTSDFRGD--LRAVETLVHSGLDVFAHNIETV-KRLQRIVR 225 (235)
Q Consensus 179 ~~p~~~ievl~sdg~l~--~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vc 225 (235)
.. +.+.+. +.|.+. .+.++++.+ .++.+.=.|++. +..|.+++
T Consensus 93 ~g--~~~~i~-TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~ 138 (235)
T TIGR02493 93 LG--IHTCLD-TSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLT 138 (235)
T ss_pred CC--CCEEEE-cCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHH
Confidence 53 444444 455432 567777776 467776667764 56676666
No 93
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=96.13 E-value=0.017 Score=54.84 Aligned_cols=116 Identities=9% Similarity=0.131 Sum_probs=67.6
Q ss_pred CCCCCCCCCcccCCCCCCCC-CC------chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC---
Q 026651 111 DTCTRGCRFCAVKTSRNPAP-PD------PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--- 180 (235)
Q Consensus 111 ~~CtedC~FCAQSt~~~p~~-ld------~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~--- 180 (235)
-=|...|.||+-.+...... .+ ..|+...++......++.+.+..|+---|+ .+++.+.++.|++..
T Consensus 19 PFC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~l~~ll~~i~~~~~~~ 95 (390)
T PRK06582 19 PFCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMN---PVIVEGIINKISNLAIID 95 (390)
T ss_pred CCCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCC---HHHHHHHHHHHHHhCCCC
Confidence 35999999999763211111 10 123322222221122445666666532234 456666666666532
Q ss_pred C--CceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCccc
Q 026651 181 P--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLV 232 (235)
Q Consensus 181 p--~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~ 232 (235)
+ ++++|. .-..++.+.++.|+++|++|+.=.++|. ......+- ..|+.+
T Consensus 96 ~~~eitiE~--nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg-R~h~~~ 147 (390)
T PRK06582 96 NQTEITLET--NPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG-RTHDCM 147 (390)
T ss_pred CCCEEEEEe--CCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC-CCCCHH
Confidence 2 355664 4456799999999999999999999987 34455555 566544
No 94
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=96.11 E-value=0.076 Score=46.40 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=72.0
Q ss_pred CCceeeeeeecCCCCCCCCCCcccCCCC---CCCCCCchhHHHHHHHHHHc---CCcEEEEEeecCCCCCCCchHHHHHH
Q 026651 99 DGIATATIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFART 172 (235)
Q Consensus 99 ~~~~taT~mIlG~~CtedC~FCAQSt~~---~p~~ld~eE~~~~A~aa~~~---Gl~y~VVTSg~RddL~D~ga~~~a~~ 172 (235)
||.+.. ++|--..|+-+|.||...... ....++++|+.+..+..... ..+.+++|-|- -+- -.+.+.+.
T Consensus 17 dg~g~~-~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGE--Pll--~~~~~~~l 91 (246)
T PRK11145 17 DGPGIR-FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGE--AIL--QAEFVRDW 91 (246)
T ss_pred CCCCeE-EEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCcc--Hhc--CHHHHHHH
Confidence 344443 447688999999999965211 11357888888776665443 12345555432 122 24556688
Q ss_pred HHHHHhhCCCceEEEeecCCCC--CHHHHHHHHhcCCCeeccCcccc-cccccccc
Q 026651 173 VKAMKKQKPDIMVECLTSDFRG--DLRAVETLVHSGLDVFAHNIETV-KRLQRIVR 225 (235)
Q Consensus 173 Ir~Ik~~~p~~~ievl~sdg~l--~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vc 225 (235)
++.+|+.. ..+- +.+.|.+ ..+.++.+++ .+|.++=-|++. +..|..++
T Consensus 92 ~~~~k~~g--~~i~-l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~ 143 (246)
T PRK11145 92 FRACKKEG--IHTC-LDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLV 143 (246)
T ss_pred HHHHHHcC--CCEE-EECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhccccc
Confidence 88888753 3443 3445554 3577888776 478777778876 45666666
No 95
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=96.09 E-value=0.022 Score=53.47 Aligned_cols=126 Identities=9% Similarity=0.070 Sum_probs=68.5
Q ss_pred eeeeeecCCCCCCCCCCcccCCCCCCCCC-C-----chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSRNPAPP-D-----PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~~p~~l-d-----~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~I 176 (235)
|+..=|==-=|+..|.||+..+....... + .+|+.+..+......++-+-+=-|+---|+ .+++.+.++.|
T Consensus 6 ~~~lYiHiPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i 82 (353)
T PRK05904 6 TKHLYIHIPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTI 82 (353)
T ss_pred eeEEEEEeCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHH
Confidence 33333334459999999998632111101 0 122222222211111233333333321123 46667777777
Q ss_pred HhhCC-CceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCccc
Q 026651 177 KKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLV 232 (235)
Q Consensus 177 k~~~p-~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~ 232 (235)
++..+ ++.+-+-+.-..+++|.++.|+++|+.+++--+|+. .+.-..+. ..|+.+
T Consensus 83 ~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~~ 139 (353)
T PRK05904 83 KPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTIQ 139 (353)
T ss_pred HHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHH
Confidence 66532 223333344455689999999999999999999987 45555555 556554
No 96
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=95.94 E-value=0.025 Score=54.18 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=64.2
Q ss_pred CCCCCCCCCcccCCCC-CC-CCCCc--hhHHHHHHHHHHc--CCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCC-
Q 026651 111 DTCTRGCRFCAVKTSR-NP-APPDP--MEPENTAKAIASW--GVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP- 181 (235)
Q Consensus 111 ~~CtedC~FCAQSt~~-~p-~~ld~--eE~~~~A~aa~~~--Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p- 181 (235)
--|...|.||...+.. .+ ...+. +.+.+..+...+. +.. .+.+.-|+ ..--..+++.+.++.|++..+
T Consensus 47 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGT---Ps~l~~~~l~~Ll~~i~~~~~~ 123 (430)
T PRK08208 47 PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGT---PTLLNAAELEKLFDSVERVLGV 123 (430)
T ss_pred CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCc---cccCCHHHHHHHHHHHHHhCCC
Confidence 6699999999865321 11 11111 2222222222221 222 23332332 222235666777777765432
Q ss_pred -----CceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCccc
Q 026651 182 -----DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLV 232 (235)
Q Consensus 182 -----~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~ 232 (235)
++++| +.-..++++.++.|+++|++++.--+||. .+....+- ..|+++
T Consensus 124 ~~~~~eitiE--~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~~~~ 177 (430)
T PRK08208 124 DLGNIPKSVE--TSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALH-RPQKRA 177 (430)
T ss_pred CCCCceEEEE--eCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CCCCHH
Confidence 23344 32344699999999999999999999998 44555554 555554
No 97
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=95.91 E-value=0.12 Score=49.38 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=70.1
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHH--------HHcCCcEEEEEe-ecCCCCCCCchHHHHHHHHHHHhhC
Q 026651 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAI--------ASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQK 180 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa--------~~~Gl~y~VVTS-g~RddL~D~ga~~~a~~Ir~Ik~~~ 180 (235)
-..|+-+|.||+-........+..+|+.+....+ ...+++.+|+|. |-= |-. .+.+.+.|+.+++..
T Consensus 128 q~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEP--Lln--~d~v~~~i~~l~~~~ 203 (368)
T PRK14456 128 QAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEP--LLN--TDNVFEAVLTLSTRK 203 (368)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCcc--ccC--HHHHHHHHHHHhccc
Confidence 4579999999996632222358888998875433 234567777776 432 333 356888888887631
Q ss_pred CC-----ceEEEeecCCCCCHHHHHHHHhcCCC-eeccCcccc-cccccccc
Q 026651 181 PD-----IMVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETV-KRLQRIVR 225 (235)
Q Consensus 181 p~-----~~ievl~sdg~l~~e~l~~L~eAG~d-~ynHNLETs-~rlfp~Vc 225 (235)
-. -.|.+-+. |+ .+.+++|+++|++ +++==|.+. +..|.+|.
T Consensus 204 ~~~~is~r~ItisT~-Gl--~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~ 252 (368)
T PRK14456 204 YRFSISQRKITISTV-GI--TPEIDRLATSGLKTKLAVSLHSADQEKRERLM 252 (368)
T ss_pred cccCcCcCeeEEECC-CC--hHHHHHHHHcCCCceEEEEecCCCHHHHHHhc
Confidence 11 12344443 43 3568999999997 788888874 66666665
No 98
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=95.83 E-value=0.037 Score=52.10 Aligned_cols=114 Identities=12% Similarity=0.173 Sum_probs=66.4
Q ss_pred CCCCCCCCcccCCCCCCCCCCc--------hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC---
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDP--------MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK--- 180 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~--------eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~--- 180 (235)
=|...|.||+..+..... ... +|+...+.......++-+-+-.|+---|+ .+++.+.+..|++..
T Consensus 13 FC~~kC~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i~~~f~~~ 88 (380)
T PRK09057 13 FCLAKCPYCDFNSHVRHA-IDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAIARLWPVA 88 (380)
T ss_pred CcCCcCCCCCCcccCcCc-CCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHHHHhCCCC
Confidence 499999999987422111 211 12222222211112344555555432233 467777777777653
Q ss_pred C--CceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCccc
Q 026651 181 P--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGLV 232 (235)
Q Consensus 181 p--~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y~ 232 (235)
+ ++++| +.-..++.+.++.|+++|++|+.=.+||.- +....+- ..|+.+
T Consensus 89 ~~~eit~E--~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~-R~~~~~ 140 (380)
T PRK09057 89 DDIEITLE--ANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLG-RLHSVA 140 (380)
T ss_pred CCccEEEE--ECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHH
Confidence 2 24455 344567899999999999999999998863 3344444 455544
No 99
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=95.71 E-value=0.13 Score=42.71 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=51.6
Q ss_pred CCceeeeeeecCCCCCCCCCCcccCCCC---CCCCCCchhHHHHHHHHHHcC-CcEEEEEeecCCCCCCCchHHHHHHHH
Q 026651 99 DGIATATIMLLGDTCTRGCRFCAVKTSR---NPAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVK 174 (235)
Q Consensus 99 ~~~~taT~mIlG~~CtedC~FCAQSt~~---~p~~ld~eE~~~~A~aa~~~G-l~y~VVTSg~RddL~D~ga~~~a~~Ir 174 (235)
.|.++..| + ..|+-+|+||...... ....++.+++.++.+.+.+.+ +..+.+|-|.= +-...++.+.+.++
T Consensus 14 ~G~r~~if--~-~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEP--llq~~~~~l~~ll~ 88 (154)
T TIGR02491 14 EGIRVSLF--V-AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDP--LYPRNVEELIELVK 88 (154)
T ss_pred CCcEEEEE--E-CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhh--CCCCCHHHHHHHHH
Confidence 45555444 3 4599999999976321 124688777777777777776 44566665532 44345688999999
Q ss_pred HHHhhCC
Q 026651 175 AMKKQKP 181 (235)
Q Consensus 175 ~Ik~~~p 181 (235)
.+|+..+
T Consensus 89 ~~k~~~~ 95 (154)
T TIGR02491 89 KIKAEFP 95 (154)
T ss_pred HHHHhCC
Confidence 9987643
No 100
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=95.62 E-value=0.063 Score=50.90 Aligned_cols=117 Identities=10% Similarity=0.179 Sum_probs=67.2
Q ss_pred CCCCCCCCcccCCCCCC-C-CCCc----hhHHHHHHHHHH--cCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCC
Q 026651 112 TCTRGCRFCAVKTSRNP-A-PPDP----MEPENTAKAIAS--WGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP 181 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p-~-~ld~----eE~~~~A~aa~~--~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p 181 (235)
-|...|.||+-.+...+ . .... +.+.+..+.+.. .|.+ -+.+-.|+---|+ .+++.+.++.|++..|
T Consensus 28 FC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~---~~~L~~ll~~i~~~~~ 104 (394)
T PRK08898 28 WCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLS---AAGLDRLLSDVRALLP 104 (394)
T ss_pred CccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCC---HHHHHHHHHHHHHhCC
Confidence 49999999996532111 1 1111 222222222211 1222 3444444422233 5677777777877653
Q ss_pred ---CceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCccc
Q 026651 182 ---DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLV 232 (235)
Q Consensus 182 ---~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~ 232 (235)
++.+-+-+.-..++.|.++.|+++|++++.=.+||. +.....+- ..|+.+
T Consensus 105 ~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~-R~~~~~ 158 (394)
T PRK08898 105 LDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALG-RIHDGA 158 (394)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhC-CCCCHH
Confidence 234444455556689999999999999999999986 44555554 455543
No 101
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=95.62 E-value=0.14 Score=48.52 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=59.8
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc------CCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhC-
Q 026651 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW------GVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQK- 180 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~------Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~- 180 (235)
-..|+-+|.||+-........+..+|+++....++.. |.. .-||.+|-+.-|-. .+.+.+.++.+++..
T Consensus 109 q~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln--~~~v~~~l~~l~~~~G 186 (354)
T PRK14460 109 QVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLN--LDEVMRSLRTLNNEKG 186 (354)
T ss_pred CCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCC--HHHHHHHHHHHhhhhc
Confidence 4589999999984421112368999999887544322 322 24444444432332 677888888887532
Q ss_pred ---CCceEEEeecCCCCCHHHHHHHHhcCCCeeccCc
Q 026651 181 ---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (235)
Q Consensus 181 ---p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNL 214 (235)
+.-.+-+-+ -|. .+.++.|+++|+..++==|
T Consensus 187 l~~~~r~itvsT-~G~--~~~i~~L~~~~l~~L~iSL 220 (354)
T PRK14460 187 LNFSPRRITVST-CGI--EKGLRELGESGLAFLAVSL 220 (354)
T ss_pred cCCCCCeEEEEC-CCC--hHHHHHHHhCCCcEEEEeC
Confidence 111234333 343 6789999999985554334
No 102
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=95.57 E-value=0.08 Score=49.51 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhh---CCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCccc
Q 026651 166 SGHFARTVKAMKKQ---KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGLV 232 (235)
Q Consensus 166 a~~~a~~Ir~Ik~~---~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y~ 232 (235)
.+++.+.++.|++. .+++.+-+-+.-..+++|.++.|+++|+++++=-+||.- +....+. ..|+.+
T Consensus 75 ~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~~ 144 (375)
T PRK05628 75 AEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTPG 144 (375)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHH
Confidence 35666666666653 243322222334557999999999999999999999863 4444454 555554
No 103
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=95.48 E-value=0.026 Score=43.55 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=43.8
Q ss_pred cCCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHcCCc-E-EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCc
Q 026651 109 LGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGVD-Y-IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (235)
Q Consensus 109 lG~~CtedC~FCAQSt~~~---p~~ld~eE~~~~A~aa~~~Gl~-y-~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~ 183 (235)
+-..|.-+|.||.+..... ....+.+++.+..+..++.+.. . +.+|.|. -+-....+.+.+.++.+++..|+.
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGE--Pll~~~~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGE--PLLYLNPEDLIELIEYLKERGPEI 81 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSS--GGGSTTHHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCC--CccccCHHHHHHHHHHHHhhCCCc
Confidence 4578999999999852111 2357778888888888888874 3 5556553 131133678899999999887777
Q ss_pred eEEEeecCCCCC
Q 026651 184 MVECLTSDFRGD 195 (235)
Q Consensus 184 ~ievl~sdg~l~ 195 (235)
.+.+.+. |.+.
T Consensus 82 ~i~i~TN-g~~~ 92 (119)
T PF13394_consen 82 KIRIETN-GTLP 92 (119)
T ss_dssp EEEEEE--STTH
T ss_pred eEEEEeC-Ceec
Confidence 8887765 4444
No 104
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=95.29 E-value=0.18 Score=42.08 Aligned_cols=83 Identities=13% Similarity=0.190 Sum_probs=51.6
Q ss_pred CCceeeeeeecCCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHcCC--cEEEEEeecCCCCCCCchHHHHHHH
Q 026651 99 DGIATATIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTV 173 (235)
Q Consensus 99 ~~~~taT~mIlG~~CtedC~FCAQSt~~~---p~~ld~eE~~~~A~aa~~~Gl--~y~VVTSg~RddL~D~ga~~~a~~I 173 (235)
.|.++..|+ ..|+-+|.||....... ...++.+...++.+.....+. ..+.+|.|.= |-...++.+.+.+
T Consensus 15 pG~r~~if~---~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEP--l~~~~~~~l~~l~ 89 (154)
T PRK11121 15 PGTRCTLFV---SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDP--LHPQNVPDILKLV 89 (154)
T ss_pred CCcEEEEEc---CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCc--cchhhHHHHHHHH
Confidence 355554444 89999999997762111 123554444455555555555 3566665532 3334578899999
Q ss_pred HHHHhhCCCceEE
Q 026651 174 KAMKKQKPDIMVE 186 (235)
Q Consensus 174 r~Ik~~~p~~~ie 186 (235)
+++|+..|+.+|-
T Consensus 90 ~~~k~~~~~~~i~ 102 (154)
T PRK11121 90 QRVKAECPGKDIW 102 (154)
T ss_pred HHHHHHCCCCCEE
Confidence 9999887766563
No 105
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=95.26 E-value=0.13 Score=47.57 Aligned_cols=114 Identities=10% Similarity=0.037 Sum_probs=72.1
Q ss_pred ecCCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCce
Q 026651 108 LLGDTCTRGCRFCAVKTSRNP---APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIM 184 (235)
Q Consensus 108 IlG~~CtedC~FCAQSt~~~p---~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ 184 (235)
-+...|.-+|.||.......+ ..++.+++.+. +.+.|+..+.+|.|-= |-..+ |.++|+.+++.. ..
T Consensus 33 e~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~---i~e~g~~~V~i~GGEP--LL~pd---l~eiv~~~~~~g--~~ 102 (318)
T TIGR03470 33 EPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRA---VDECGAPVVSIPGGEP--LLHPE---IDEIVRGLVARK--KF 102 (318)
T ss_pred ecccccCcCCcCCCCCcCCCcccccCCCHHHHHHH---HHHcCCCEEEEeCccc--ccccc---HHHHHHHHHHcC--Ce
Confidence 348899999999986521111 24677777654 5567888777776532 44333 456666666542 35
Q ss_pred EEEeecCCCCCHHHHHHHHhcCCCeeccCccccccccccccCCCCccc
Q 026651 185 VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGLV 232 (235)
Q Consensus 185 ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rlfp~Vcdtth~Y~ 232 (235)
+.+++. |.+-.+.++.|+++|...++=-|+..+..+..++....+|+
T Consensus 103 v~l~TN-G~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~ 149 (318)
T TIGR03470 103 VYLCTN-ALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFD 149 (318)
T ss_pred EEEecC-ceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHH
Confidence 666655 55445678999999988887777776655555542334454
No 106
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=95.14 E-value=0.11 Score=49.42 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhhC---CCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcccc
Q 026651 166 SGHFARTVKAMKKQK---PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGLVM 233 (235)
Q Consensus 166 a~~~a~~Ir~Ik~~~---p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y~~ 233 (235)
.+++.+.++.|++.. +++.+-+-+.-..++.+.++.|+++|++|+.-.+||. ++....+- ..|++++
T Consensus 82 ~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~-R~~~~~~ 152 (400)
T PRK07379 82 VEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCG-RSHRVKD 152 (400)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC-CCCCHHH
Confidence 567777777776643 2223333344455699999999999999999999986 44444554 6676654
No 107
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=95.11 E-value=0.28 Score=46.39 Aligned_cols=89 Identities=12% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc---CCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCc---eE
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI---MV 185 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~---Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~---~i 185 (235)
.|+-+|.||+-........+..+|++.....+.+. +++.+|++ |-+.-|-. .+.+.+.++.++... ++ .+
T Consensus 110 GC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~Ivfm-GmGEPlln--~~~v~~~i~~l~~~~-~i~~r~i 185 (345)
T PRK14457 110 GCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFM-GMGEPLLN--IDEVLAAIRCLNQDL-GIGQRRI 185 (345)
T ss_pred CCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEE-ecCccccC--HHHHHHHHHHHhccc-CCccCce
Confidence 79999999986532222348899999887776653 34455555 43322332 566777777776531 22 23
Q ss_pred EEeecCCCCCHHHHHHHHhcCC
Q 026651 186 ECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 186 evl~sdg~l~~e~l~~L~eAG~ 207 (235)
-+-+ .| ..+.+++|++.++
T Consensus 186 tvST-~G--~~~~i~~L~~~~~ 204 (345)
T PRK14457 186 TVST-VG--VPKTIPQLAELAF 204 (345)
T ss_pred EEEC-CC--chhhHHHHHhhhh
Confidence 3333 23 4566888888874
No 108
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=94.74 E-value=0.088 Score=48.98 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=57.3
Q ss_pred eeeeecCCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHcCCcEEE-----EEeecCCCCCCCchHHHHHHHHHHHh
Q 026651 104 ATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIV-----LTSVDRDDIPDGGSGHFARTVKAMKK 178 (235)
Q Consensus 104 aT~mIlG~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~Gl~y~V-----VTSg~RddL~D~ga~~~a~~Ir~Ik~ 178 (235)
...+..+-.||++|+||+++........+++.+++..+...+.|.+... +....+.++.+ -..+......+.+
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~l~~~~~~ 276 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALND--EKRFELLSLELIE 276 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccc--hhhcccchHHHHH
Confidence 4455558899999999999942113467777777666666555654222 22222211111 1222222222222
Q ss_pred h-CC-CceEEEeec---CCCCC-HHHHHHHHhcCCCeeccCccc
Q 026651 179 Q-KP-DIMVECLTS---DFRGD-LRAVETLVHSGLDVFAHNIET 216 (235)
Q Consensus 179 ~-~p-~~~ievl~s---dg~l~-~e~l~~L~eAG~d~ynHNLET 216 (235)
. .+ ...+..-++ .-.++ ++.++.+.++|...+-==+||
T Consensus 277 ~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Es 320 (490)
T COG1032 277 RGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIES 320 (490)
T ss_pred HhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccC
Confidence 2 11 011222222 22334 888899999997665544444
No 109
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=94.72 E-value=0.18 Score=47.87 Aligned_cols=88 Identities=8% Similarity=0.140 Sum_probs=55.8
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc-CCcEEEEEe-ecCCCCCCCchHHHHHHHHHHHhhCC----CceE
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW-GVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKP----DIMV 185 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~-Gl~y~VVTS-g~RddL~D~ga~~~a~~Ir~Ik~~~p----~~~i 185 (235)
.|+-+|.||+-........+..+|++.....+.+. +++++|+|. |- -| ..++.+.+.++.|+.... .-.|
T Consensus 112 GC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGE--PL--~N~d~vi~al~~l~~~~g~~~s~r~I 187 (345)
T PRK14466 112 GCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGE--PL--DNLDEVLKALEILTAPYGYGWSPKRI 187 (345)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCc--Cc--ccHHHHHHHHHHHhhccccCcCCceE
Confidence 99999999994432222358999999998887543 477777776 53 24 346788888888865421 1234
Q ss_pred EEeecCCCCCHHHHHHHHhcC
Q 026651 186 ECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 186 evl~sdg~l~~e~l~~L~eAG 206 (235)
-+.++ | ....++++.+..
T Consensus 188 tVsT~-G--~~~~i~~l~~~~ 205 (345)
T PRK14466 188 TVSTV-G--LKKGLKRFLEES 205 (345)
T ss_pred EEEcC-C--CchHHHHHhhcc
Confidence 44444 2 334456665533
No 110
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=94.67 E-value=0.14 Score=48.07 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhh-CCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc-cccccccCCCCcc
Q 026651 166 SGHFARTVKAMKKQ-KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK-RLQRIVRDPRAGL 231 (235)
Q Consensus 166 a~~~a~~Ir~Ik~~-~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~-rlfp~Vcdtth~Y 231 (235)
.+++.+.+..|++. ..++++|+ -| ..++++.++.|+++|+++++=.+||.- +....+- ..|+.
T Consensus 74 ~~~l~~ll~~i~~~~~~eit~E~-~P-~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~-R~~~~ 138 (370)
T PRK06294 74 PALIQDILKTLEAPHATEITLEA-NP-ENLSESYIRALALTGINRISIGVQTFDDPLLKLLG-RTHSS 138 (370)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEe-CC-CCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcC-CCCCH
Confidence 45666666677553 23456663 33 446899999999999999999998863 3333443 44543
No 111
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=94.61 E-value=0.69 Score=43.72 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH-cCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC----CCce
Q 026651 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK----PDIM 184 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~-~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~----p~~~ 184 (235)
...|+-+|.||+-........+..+|+++....+.+ .+++.+|+|+ -+..+. .++.+.+.++.+++.. +.-.
T Consensus 110 q~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG-~GEPl~--n~~~vi~~l~~l~~~~gl~~s~r~ 186 (349)
T PRK14463 110 QVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMG-MGEPLA--NLDNVIPALQILTDPDGLQFSTRK 186 (349)
T ss_pred cCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEec-CCcchh--cHHHHHHHHHHhhcccccCcCCce
Confidence 679999999998543221335889999987666543 4577776666 233343 3566777777765421 1113
Q ss_pred EEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccc
Q 026651 185 VECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIV 224 (235)
Q Consensus 185 ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~V 224 (235)
+-+. ..|.+ ..+.+|.+...-.++-.|++. +..|.+|
T Consensus 187 itVs-TnGl~--~~i~~l~~~~~~~LaiSL~a~~~e~r~~I 224 (349)
T PRK14463 187 VTVS-TSGLV--PEMEELGREVTVNLAVSLNATTDEVRDRI 224 (349)
T ss_pred EEEE-CCCch--HHHHHHhhccCeEEEEeCCCCCHHHHHHh
Confidence 3333 34443 456666554322334567766 5555555
No 112
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=94.33 E-value=0.2 Score=48.41 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhhCC-----CceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc
Q 026651 166 SGHFARTVKAMKKQKP-----DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (235)
Q Consensus 166 a~~~a~~Ir~Ik~~~p-----~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs 217 (235)
.+++.+.++.|++..| ++++| +.-..++.|.++.|+++|++|+.--+||.
T Consensus 130 ~~~l~~ll~~i~~~~~l~~~~eitiE--~~p~~~t~e~l~~l~~aGvnRiSiGVQSf 184 (449)
T PRK09058 130 AEDLARLITALREYLPLAPDCEITLE--GRINGFDDEKADAALDAGANRFSIGVQSF 184 (449)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEE--eCcCcCCHHHHHHHHHcCCCEEEecCCcC
Confidence 5677777777776543 34455 33345699999999999999999998885
No 113
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.82 E-value=0.41 Score=39.26 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
.+.++++.+.+++.++++|-.. .-.+.+-++++++++..+. .+-+++ -|..-.++.+.|+++|+++|=|
T Consensus 43 e~~v~aa~e~~adii~iSsl~~-----~~~~~~~~~~~~L~~~g~~-~i~viv-GG~~~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSLAG-----GHLTLVPALRKELDKLGRP-DILVVV-GGVIPPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCchh-----hhHHHHHHHHHHHHhcCCC-CCEEEE-eCCCChHhHHHHHHCCCCEEEC
Confidence 3455677788999888877643 3367788999999886543 344555 3444567788999999988754
No 114
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=93.78 E-value=0.43 Score=46.13 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=73.1
Q ss_pred ecCCCCCC---CCCCcccCC-CCCCCCCCchhHHHHHHHHHHcC---CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC
Q 026651 108 LLGDTCTR---GCRFCAVKT-SRNPAPPDPMEPENTAKAIASWG---VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK 180 (235)
Q Consensus 108 IlG~~Cte---dC~FCAQSt-~~~p~~ld~eE~~~~A~aa~~~G---l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~ 180 (235)
+.=+.|.+ +|.||.-+. ......++++|+++..+...... ...+.+++| .+-+- ...+.+.++.+|+..
T Consensus 27 ~~c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGG-Gepl~---~~~l~eLl~~lk~~g 102 (404)
T TIGR03278 27 FGCKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGG-GDVSC---YPELEELTKGLSDLG 102 (404)
T ss_pred CCCCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECC-ccccc---CHHHHHHHHHHHhCC
Confidence 44668977 999996552 11234788999999988887643 234444444 43222 357888889998753
Q ss_pred CCceEEEe-ecC-CCCCHHHHHHHHhcCCCeeccCcccc-cccccc
Q 026651 181 PDIMVECL-TSD-FRGDLRAVETLVHSGLDVFAHNIETV-KRLQRI 223 (235)
Q Consensus 181 p~~~ievl-~sd-g~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~ 223 (235)
+.+-+. ++- ++.+++.+++|++.|++.++--|.+. +..+.+
T Consensus 103 --i~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~k 146 (404)
T TIGR03278 103 --LPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRRE 146 (404)
T ss_pred --CCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 233432 443 56799999999999999997766665 444444
No 115
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=93.77 E-value=0.65 Score=43.44 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=61.7
Q ss_pred CCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc---CCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC-CCc---
Q 026651 111 DTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDI--- 183 (235)
Q Consensus 111 ~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~---Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~-p~~--- 183 (235)
..|.-+|.||+-........+..+|+.+.+..++.. ++..++++. .+.-|-. .+.+.+.++.++... .+.
T Consensus 109 ~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~G-mGEPLln--~d~v~~~i~~l~~~~~~~~g~~ 185 (343)
T PRK14469 109 VGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMG-MGEPLLN--YENVIKSIKILNHKKMKNIGIR 185 (343)
T ss_pred CCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEc-cChhhhh--HHHHHHHHHHHhchhcccCCCC
Confidence 689999999985422212358889998887665432 355665554 3322322 456777777775421 111
Q ss_pred eEEEeecCCCCCHHHHHHHHhcCCC-eeccCcccc
Q 026651 184 MVECLTSDFRGDLRAVETLVHSGLD-VFAHNIETV 217 (235)
Q Consensus 184 ~ievl~sdg~l~~e~l~~L~eAG~d-~ynHNLETs 217 (235)
.|-+ ...|. .+.++.|.++|++ .++=-|.+.
T Consensus 186 ~iti-sTnG~--~~~i~~L~~~~l~~~LaiSL~a~ 217 (343)
T PRK14469 186 RITI-STVGI--PEKIIQLAEEGLDVKLALSLHAP 217 (343)
T ss_pred eEEE-ECCCC--hHHHHHHHhhCCCcEEEEEeCCC
Confidence 3444 33343 7889999999998 465555554
No 116
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=93.72 E-value=0.2 Score=44.15 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
...+.+.++...++|++.+++|++.+|. ...|.+. +.++.+++.. .+.+.++-|..+.+.+++|++.|++-
T Consensus 146 ~~~~~~~~~~~~~~g~~~ii~tdi~~dG-t~~G~d~--~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~g 216 (229)
T PF00977_consen 146 GIDLEEFAKRLEELGAGEIILTDIDRDG-TMQGPDL--ELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDG 216 (229)
T ss_dssp EEEHHHHHHHHHHTT-SEEEEEETTTTT-TSSS--H--HHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECE
T ss_pred CcCHHHHHHHHHhcCCcEEEEeeccccC-CcCCCCH--HHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcE
Confidence 3567788889999999999999999974 3344543 6677777653 57899999999999999999999853
No 117
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.62 E-value=0.47 Score=41.28 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=63.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.++.++..++++...++|++++-++++...... --.....+.++.+++..|++.+-+++..+ .+.++.++++|+++
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGVDE 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCcCE
Confidence 569999999999999999999999998753111 11223467778888777667777777654 88999999999988
Q ss_pred eccCcccc
Q 026651 210 FAHNIETV 217 (235)
Q Consensus 210 ynHNLETs 217 (235)
++==+.++
T Consensus 91 i~i~~~~s 98 (265)
T cd03174 91 VRIFDSAS 98 (265)
T ss_pred EEEEEecC
Confidence 76555444
No 118
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=93.61 E-value=0.48 Score=45.14 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=57.7
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHcC-C---c-EEEEEeecCCCCCCCchHHHHHHHHHHHhhC-CCc--
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWG-V---D-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDI-- 183 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~G-l---~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~-p~~-- 183 (235)
.|+-+|.||+-.+.....-+..+|+++....++..- . + -.||++|-+.-|- -.+.+.++++.+++.. -++
T Consensus 119 GC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL~--N~d~v~~~l~~l~~~~Gl~~~~ 196 (356)
T PRK14462 119 GCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPLD--NLDNVSKAIKIFSENDGLAISP 196 (356)
T ss_pred cCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccccc--CHHHHHHHHHHhcCccCCCcCC
Confidence 699999999865332223688999999887776531 1 1 3678887664333 3778888888888742 111
Q ss_pred -eEEEeecCCCCCHHHHHHHHhcCC
Q 026651 184 -MVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 184 -~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
.|-|-++ |.. +.+++|.+.++
T Consensus 197 r~itVsTs-G~~--~~i~~L~~~dl 218 (356)
T PRK14462 197 RRQTISTS-GLA--SKIKKLGEMNL 218 (356)
T ss_pred CceEEECC-CCh--HHHHHHHhcCC
Confidence 1222232 333 57888887755
No 119
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=93.59 E-value=0.81 Score=43.14 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=61.2
Q ss_pred CCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc-C-----CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC-CCc
Q 026651 111 DTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW-G-----VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDI 183 (235)
Q Consensus 111 ~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~-G-----l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~-p~~ 183 (235)
..|+-+|.||+-.+......++.+|+++....+... | ++.+|++. -+.-|-. .+.+.++++.+.... -++
T Consensus 101 ~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G-mGEPlln--~~~v~~~i~~l~~~~g~~l 177 (343)
T PRK14468 101 VGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG-MGEPLLN--YENVLKAARIMLHPQALAM 177 (343)
T ss_pred CCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec-cCccccC--HHHHHHHHHHhcccccccc
Confidence 469999999985432223468999999877666543 3 34555654 2322332 566667666663221 011
Q ss_pred ---eEEEeecCCCCCHHHHHHHHhcCCCe-eccCcccc-cccccccc
Q 026651 184 ---MVECLTSDFRGDLRAVETLVHSGLDV-FAHNIETV-KRLQRIVR 225 (235)
Q Consensus 184 ---~ievl~sdg~l~~e~l~~L~eAG~d~-ynHNLETs-~rlfp~Vc 225 (235)
.|-+- .-|. ...+++|+++++++ ++=-|.+. +..|.+|.
T Consensus 178 ~~r~itvS-T~G~--~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~ 221 (343)
T PRK14468 178 SPRRVTLS-TVGI--PKGIRRLAEEDLGVRLALSLHAPDEETRQRII 221 (343)
T ss_pred cCceEEEE-CCCC--hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhc
Confidence 12222 2333 46888999999873 44334333 33345554
No 120
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.54 E-value=0.32 Score=43.03 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=55.2
Q ss_pred CCCchhHHHHHHHHHHcCCcE--EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCC
Q 026651 130 PPDPMEPENTAKAIASWGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y--~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
-+++||....|.+++.+|+++ ..-.||.... -+ .+.|++||+.. .+-+.+..|.-+.|+++.+.++|.
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~-v~------~e~i~~Vk~~~---~~Pv~vGGGIrs~e~a~~l~~~GA 199 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYP-VN------PETISLVKKAS---GIPLIVGGGIRSPEIAYEIVLAGA 199 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCC-CC------HHHHHHHHHhh---CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 378999999999999999994 4445665321 11 67777787753 467788899999999999999999
Q ss_pred Cee
Q 026651 208 DVF 210 (235)
Q Consensus 208 d~y 210 (235)
|++
T Consensus 200 D~V 202 (205)
T TIGR01769 200 DAI 202 (205)
T ss_pred CEE
Confidence 875
No 121
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=93.35 E-value=0.86 Score=44.10 Aligned_cols=115 Identities=13% Similarity=0.212 Sum_probs=69.7
Q ss_pred CCCCCCCCCCcccCCCCCC-CCCC--chhHHHHHHHHHHcCCcE-EEEEeecCCCCCCCchHHHHHHHHHHHhhCC--Cc
Q 026651 110 GDTCTRGCRFCAVKTSRNP-APPD--PMEPENTAKAIASWGVDY-IVLTSVDRDDIPDGGSGHFARTVKAMKKQKP--DI 183 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~p-~~ld--~eE~~~~A~aa~~~Gl~y-~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p--~~ 183 (235)
=.=|...|.||+..+.... ...+ .+.+.+..+.+++.|.++ .|--.|-.+.+. .+++.+.++.|++..+ ++
T Consensus 59 IPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l---~~~L~~ll~~i~~~f~i~ei 135 (433)
T PRK08629 59 VPFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL---EDELAKTLELAKKLFSIKEV 135 (433)
T ss_pred eCCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC---HHHHHHHHHHHHHhCCCceE
Confidence 3469999999997732111 1111 244444455555556553 444445444432 3677777888877642 45
Q ss_pred eEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccccCCCCcc
Q 026651 184 MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIVRDPRAGL 231 (235)
Q Consensus 184 ~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~Vcdtth~Y 231 (235)
++|+ -| ..++.+.++.|+++ +++++--+||. .+.-..+. ..|++
T Consensus 136 s~E~-~P-~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~g-R~h~~ 180 (433)
T PRK08629 136 SCES-DP-NHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVD-RYEKF 180 (433)
T ss_pred EEEe-Cc-ccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcC-CCCCh
Confidence 5654 33 34589999999999 99999998886 33444443 44544
No 122
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=93.07 E-value=1 Score=42.66 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=55.2
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH----cC--CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCC-Cc-
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIAS----WG--VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DI- 183 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~----~G--l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~- 183 (235)
.|+-+|.||+.........+..+|+++....+.. .| +..+|+ +|-+.-|-. .+.+.+.++.+++... ++
T Consensus 114 GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvf-mGmGEPLln--~d~v~~~l~~l~~~~g~~i~ 190 (355)
T TIGR00048 114 GCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVF-MGMGEPLLN--LNEVVKAMEIMNDDFGLGIS 190 (355)
T ss_pred CCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEE-ecCCchhhC--HHHHHHHHHHhhcccccCcC
Confidence 5999999999764222345888999887655432 22 333444 443432332 6677778887765321 12
Q ss_pred --eEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 184 --MVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 184 --~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.+-+-+ -|.. +.+++|++.++++
T Consensus 191 ~~~itisT-~G~~--~~i~~l~~~~l~~ 215 (355)
T TIGR00048 191 KRRITIST-SGVV--PKIDILADKMLQV 215 (355)
T ss_pred CCeEEEEC-CCch--HHHHHHHHhCCCc
Confidence 233333 3433 7889999988873
No 123
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=93.04 E-value=1.3 Score=42.16 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=72.1
Q ss_pred eeeec--CCCCCCCCCCcccCCCC-----CC-CCCCchhHHHHHHHHHH-cCCcEEEEE-eecCCCCCCCchHHHHHHHH
Q 026651 105 TIMLL--GDTCTRGCRFCAVKTSR-----NP-APPDPMEPENTAKAIAS-WGVDYIVLT-SVDRDDIPDGGSGHFARTVK 174 (235)
Q Consensus 105 T~mIl--G~~CtedC~FCAQSt~~-----~p-~~ld~eE~~~~A~aa~~-~Gl~y~VVT-Sg~RddL~D~ga~~~a~~Ir 174 (235)
++||. |..|--+|.||-+.... .+ ..++.++..++.+.+.+ .+...+.++ .|-=+ |-. +...+.++++
T Consensus 14 ~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEP-lL~-~~~~~~~~~~ 91 (412)
T PRK13745 14 YIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGET-LMR-PLSFYKKALE 91 (412)
T ss_pred EEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcccc-CCC-cHHHHHHHHH
Confidence 34544 67999999999986211 11 25888888888776655 456655454 34222 322 2334555554
Q ss_pred HHHhhCC--CceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccccccccccc
Q 026651 175 AMKKQKP--DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR 225 (235)
Q Consensus 175 ~Ik~~~p--~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rlfp~Vc 225 (235)
.+++... .+.+.+.+..-+++++-++.|++.|+ .+.==|+..+..+...|
T Consensus 92 ~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R 143 (412)
T PRK13745 92 LQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYR 143 (412)
T ss_pred HHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhc
Confidence 4443222 23444556655789999999999997 66666676665555555
No 124
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=92.96 E-value=0.55 Score=43.78 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=84.1
Q ss_pred CccceeCCCCCCceeeeeeec--CCC-CCCCCCCcccCCCCC-------CCCCCchhHHHHHHHHHHc------C-----
Q 026651 89 NIGECWNGGGDGIATATIMLL--GDT-CTRGCRFCAVKTSRN-------PAPPDPMEPENTAKAIASW------G----- 147 (235)
Q Consensus 89 Ni~ec~~~~~~~~~taT~mIl--G~~-CtedC~FCAQSt~~~-------p~~ld~eE~~~~A~aa~~~------G----- 147 (235)
..+.||...--|+..=-||=| +-. |+-+|.||....... ....+++|+++.+...... |
T Consensus 41 ~~~~cyk~~fygi~s~~c~q~~P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~ 120 (322)
T PRK13762 41 GGRSCYKSKFYGIESHRCVQMTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVD 120 (322)
T ss_pred CCCcccccccccccchheeccCchhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 556777765446666667777 344 999999999763221 1257788888777655221 2
Q ss_pred ---------CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-
Q 026651 148 ---------VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV- 217 (235)
Q Consensus 148 ---------l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs- 217 (235)
.+++.||-+ +.-+- -.+|.+.++.+++. ++.+- +.+.|.+ .+.++.| +++++.+.=-|...
T Consensus 121 ~~~~~ea~~~~~v~iSl~-GEPlL---~p~l~eli~~~k~~--Gi~~~-L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~ 191 (322)
T PRK13762 121 REKFEEAMEPKHVAISLS-GEPTL---YPYLPELIEEFHKR--GFTTF-LVTNGTR-PDVLEKL-EEEPTQLYVSLDAPD 191 (322)
T ss_pred HHHhhhccCCCEEEEeCC-ccccc---hhhHHHHHHHHHHc--CCCEE-EECCCCC-HHHHHHH-HhcCCEEEEEccCCC
Confidence 346777733 32222 23688888888876 34554 4566765 6888898 88999888777776
Q ss_pred cccccccc
Q 026651 218 KRLQRIVR 225 (235)
Q Consensus 218 ~rlfp~Vc 225 (235)
+..|..|+
T Consensus 192 ~e~~~~i~ 199 (322)
T PRK13762 192 EETYKKIN 199 (322)
T ss_pred HHHHHHHh
Confidence 56777776
No 125
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.77 E-value=0.59 Score=41.54 Aligned_cols=71 Identities=10% Similarity=0.129 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
-.+.+.++...++|+...++|++.+|....+ .+ .+.++++.+.. .+.+.++-|..+.+.++++.++|++..
T Consensus 148 ~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-~~--~~li~~l~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~v 218 (234)
T PRK13587 148 LNLFSFVRQLSDIPLGGIIYTDIAKDGKMSG-PN--FELTGQLVKAT---TIPVIASGGIRHQQDIQRLASLNVHAA 218 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccCcCCCCc-cC--HHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 3467788899999999999999999743222 11 33455555432 467899999999999999999999864
No 126
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=92.57 E-value=1.5 Score=41.35 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=62.9
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc---CCcEEEEEeecCCCCCCCchHHHHHHHHHHHhh----CCCce
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ----KPDIM 184 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~---Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~----~p~~~ 184 (235)
.|+-+|.||+.........+..+|+.+....+.+. .++.+|++. .+.-|- -.+.+.+.++.|+.. .+...
T Consensus 106 GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmG-mGEPll--N~d~v~~~i~~l~~~~~~~~~~~~ 182 (336)
T PRK14470 106 GCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMG-QGEPFL--NYDEVLRAAYALCDPAGARIDGRR 182 (336)
T ss_pred CcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEe-cCcccc--CHHHHHHHHHHHhCccccccCCCc
Confidence 49999999997742222346778887766555432 355666655 332122 245677777777642 12334
Q ss_pred EEEeecCCCCCHHHHHHHHhcCC-CeeccCcccc-cccccccc
Q 026651 185 VECLTSDFRGDLRAVETLVHSGL-DVFAHNIETV-KRLQRIVR 225 (235)
Q Consensus 185 ievl~sdg~l~~e~l~~L~eAG~-d~ynHNLETs-~rlfp~Vc 225 (235)
|.+-++ |. ...+++|.+.|. +.++==|.++ +..|.+|.
T Consensus 183 ItVsTn-G~--~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~ 222 (336)
T PRK14470 183 ISISTA-GV--VPMIRRYTAEGHKFRLCISLNAAIPWKRRALM 222 (336)
T ss_pred eEEEec-CC--hHHHHHHHhcCCCceEEEecCCCCHHHHHHhc
Confidence 555543 33 357888888876 6666666653 33444454
No 127
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=92.44 E-value=2.2 Score=39.19 Aligned_cols=110 Identities=11% Similarity=0.116 Sum_probs=60.2
Q ss_pred CCCCCcccCCCCCCC----CCCchhH----HHHHHHHHHcCCcE-EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceE
Q 026651 115 RGCRFCAVKTSRNPA----PPDPMEP----ENTAKAIASWGVDY-IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV 185 (235)
Q Consensus 115 edC~FCAQSt~~~p~----~ld~eE~----~~~A~aa~~~Gl~y-~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~i 185 (235)
..|.||+...+. +- ..+.+++ .+..+...+.+ +| +.+-+|+---+ ..+++.+.++.+++ .|.. +
T Consensus 38 ~gC~FC~~~~~~-~~~~~~~~~~~~i~~qi~~~~~~~~~~~-~~~iyf~ggt~t~l---~~~~L~~l~~~i~~-~~~~-~ 110 (302)
T TIGR01212 38 GGCTFCNDASRP-IFADEYTQARIPIKEQIKKQMKKYKKDK-KFIAYFQAYTNTYA---PVEVLKEMYEQALS-YDDV-V 110 (302)
T ss_pred CCcccCCCCCCc-cccccccccCCCHHHHHHHHHHHhhccC-EEEEEEECCCcCCC---CHHHHHHHHHHHhC-CCCE-E
Confidence 479999987322 21 1122233 33333333322 24 55566653223 36788888888886 4432 2
Q ss_pred EEe--e-cCCCCCHHHHH---HHHhcCC-CeeccCccccc-cccccccCCCCcccc
Q 026651 186 ECL--T-SDFRGDLRAVE---TLVHSGL-DVFAHNIETVK-RLQRIVRDPRAGLVM 233 (235)
Q Consensus 186 evl--~-sdg~l~~e~l~---~L~eAG~-d~ynHNLETs~-rlfp~Vcdtth~Y~~ 233 (235)
++. + |+ .++++.++ .|+++|. .++.-.|||.- +-...+. ..|++++
T Consensus 111 ~isi~trpd-~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~-Rg~t~~~ 164 (302)
T TIGR01212 111 GLSVGTRPD-CVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN-RGHDFAC 164 (302)
T ss_pred EEEEEecCC-cCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc-CcChHHH
Confidence 332 2 44 34665554 4556799 46899999973 3444555 6666653
No 128
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=92.38 E-value=1.5 Score=42.15 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=62.2
Q ss_pred CCceeeeeeec-----------CCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc---------C--CcEEEEEee
Q 026651 99 DGIATATIMLL-----------GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW---------G--VDYIVLTSV 156 (235)
Q Consensus 99 ~~~~taT~mIl-----------G~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~---------G--l~y~VVTSg 156 (235)
||..+-|++|= -..|+-+|.||+.........+..+|++.....+++. | ++. ||-+|
T Consensus 106 Dg~~iEtV~i~~~~~~tlCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~n-VvfmG 184 (373)
T PRK14459 106 DGTLVESVLMRYPDRATLCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSN-VVFMG 184 (373)
T ss_pred CCCEEEEEEEEEcCCceEEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeE-EEEec
Confidence 55555565553 3589999999994422112358999999987776531 1 233 44455
Q ss_pred cCCCCCCCchHHHHHHHHHHHhhCCC-ceE---EEeecCCCCCHHHHHHHHhcCCC
Q 026651 157 DRDDIPDGGSGHFARTVKAMKKQKPD-IMV---ECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 157 ~RddL~D~ga~~~a~~Ir~Ik~~~p~-~~i---evl~sdg~l~~e~l~~L~eAG~d 208 (235)
.+.-|- -.+.+.++++.|++..|+ ..| .+.+|- .|-...+++|++++++
T Consensus 185 mGEPLl--N~d~V~~~i~~l~~~~~~g~gis~r~ITvST-~Gl~~~i~~la~~~l~ 237 (373)
T PRK14459 185 MGEPLA--NYKRVVAAVRRITAPAPEGLGISARNVTVST-VGLVPAIRKLADEGLP 237 (373)
T ss_pred CCcchh--hHHHHHHHHHHHhCcccccCCccCCEEEEEC-cCchhHHHHHHHhcCC
Confidence 443232 267788888888762111 122 222221 1224678899999886
No 129
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=92.21 E-value=0.88 Score=39.23 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC-CCe
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDV 209 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG-~d~ 209 (235)
...+.+.++...++|++.+++|+.+++. ...|.+ .+.++++++.. .+-+.++-|..+.+.++++.+.| ++-
T Consensus 145 ~~~~~e~~~~~~~~g~~~ii~~~~~~~g-~~~G~d--~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~g 216 (233)
T PRK00748 145 GVTAEDLAKRFEDAGVKAIIYTDISRDG-TLSGPN--VEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVEG 216 (233)
T ss_pred CCCHHHHHHHHHhcCCCEEEEeeecCcC-CcCCCC--HHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCccE
Confidence 3456778899999999999999998864 333332 46677777654 36789999999999999999988 764
No 130
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=91.99 E-value=1.8 Score=41.22 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCceeeeeeec--------CCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHcC-CcEEEEEeecCCCCCCCchHHH
Q 026651 99 DGIATATIMLL--------GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHF 169 (235)
Q Consensus 99 ~~~~taT~mIl--------G~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~G-l~y~VVTSg~RddL~D~ga~~~ 169 (235)
||..+-|++|= -..|+-+|.||+-.......-+..+|+.+....+.+.. ++++|+ +|.++-|.. .+.+
T Consensus 84 Dg~~iEtV~i~~~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVf-mGmGEPl~N--~d~v 160 (344)
T PRK14464 84 DGQMVESVLLPRDGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVF-MGMGEPAHN--LDNV 160 (344)
T ss_pred CCCEEEEEEecCCcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE-eccCcccCC--HHHH
Confidence 56656666553 45899999999865322223578899998877776643 555544 554543432 5777
Q ss_pred HHHHHHHHhhC--CCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 170 ARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 170 a~~Ir~Ik~~~--p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
.+.++.|.+.. +.-.+-+ ... +.....++|.+.++.
T Consensus 161 l~ai~~l~~~~~i~~r~iti-ST~--G~~~~i~rL~~~~v~ 198 (344)
T PRK14464 161 LEAIDLLGTEGGIGHKNLVF-STV--GDPRVFERLPQQRVK 198 (344)
T ss_pred HHHHHHhhchhcCCCceEEE-ecc--cCchHHHHHHHhcCC
Confidence 77777775431 1111221 112 345667888876554
No 131
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=91.79 E-value=1 Score=40.04 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=55.7
Q ss_pred eeeeeecCCCCCCCCCCcccCCCC----CCC--CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSR----NPA--PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~----~p~--~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~I 176 (235)
+.++-|--..|.=+|.||...... ... .++.+|+++..+.....|.+++++|.|-= |-. ..+.+.++.+
T Consensus 22 ~~~~FvR~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEP--ll~---~~l~~li~~l 96 (238)
T TIGR03365 22 QKTMFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNP--ALQ---KPLGELIDLG 96 (238)
T ss_pred CeEEEEEeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCch--hhh---HhHHHHHHHH
Confidence 445555567999999999976311 111 37788888877766666688899998753 322 3577888888
Q ss_pred HhhCCCceEEEeecCCCCCHH
Q 026651 177 KKQKPDIMVECLTSDFRGDLR 197 (235)
Q Consensus 177 k~~~p~~~ievl~sdg~l~~e 197 (235)
++.. ..+.+.+ .|.+-.+
T Consensus 97 ~~~g--~~v~leT-NGtl~~~ 114 (238)
T TIGR03365 97 KAKG--YRFALET-QGSVWQD 114 (238)
T ss_pred HHCC--CCEEEEC-CCCCcHH
Confidence 8653 3454444 3444333
No 132
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=91.78 E-value=0.73 Score=39.75 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=57.3
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
...|.+.|+.-.+.|++...|+..++ . ..+-....+.|++|++.. .+.+.+..|.-+.++++++.++|++..-=
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~--~-~~g~~~~~~~i~~i~~~~---~~pv~~~GGI~~~ed~~~~~~~Ga~~vil 102 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDG--A-KAGKPVNLELIEAIVKAV---DIPVQVGGGIRSLETVEALLDAGVSRVII 102 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCc--c-ccCCcccHHHHHHHHHHC---CCCEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 45788899999999999888877644 1 122335577788887753 46788999999999999999999987654
Q ss_pred C
Q 026651 213 N 213 (235)
Q Consensus 213 N 213 (235)
+
T Consensus 103 g 103 (233)
T PRK00748 103 G 103 (233)
T ss_pred C
Confidence 3
No 133
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=91.73 E-value=1 Score=38.88 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
..+.+.++...++|++..++|..+++.. ..+. -.+.++++++. +.+-+.+.-|..+.+.++++++.|++.+
T Consensus 145 ~~~~~~~~~~~~~g~~~ii~~~~~~~g~-~~g~--~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv 215 (230)
T TIGR00007 145 VSLEELAKRLEELGLEGIIYTDISRDGT-LSGP--NFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGV 215 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeecCCCC-cCCC--CHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEE
Confidence 4567788899999999999999988632 2333 26667777764 2467899999999999999999999864
No 134
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=91.69 E-value=1.1 Score=38.50 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=56.3
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
..++.+.++...+.|+++.+++...++.-. .|.. .+.++++++.. .+-+++.-|..+.+.++++.+.|++.+
T Consensus 145 ~~~~~~~~~~~~~~ga~~iii~~~~~~g~~-~g~~--~~~i~~i~~~~---~ipvi~~GGi~~~~di~~~~~~Ga~gv 216 (234)
T cd04732 145 EVSLEELAKRFEELGVKAIIYTDISRDGTL-SGPN--FELYKELAAAT---GIPVIASGGVSSLDDIKALKELGVAGV 216 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCcc-CCCC--HHHHHHHHHhc---CCCEEEecCCCCHHHHHHHHHCCCCEE
Confidence 456778899999999999999998776432 3322 56777787653 467899999999999999999998764
No 135
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.60 E-value=0.96 Score=41.63 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
.+.|+.+.++|++.+.+ ..-..+.+.+.++.++...|. +.+.+|-|. +++.++.+++.|+|++-
T Consensus 192 leea~~A~~~GaDiI~L--------Dn~~~e~l~~~v~~~~~~~~~--~~ieAsGgI-t~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 192 LEEAKNAMNAGADIVMC--------DNMSVEEIKEVVAYRNANYPH--VLLEASGNI-TLENINAYAKSGVDAIS 255 (273)
T ss_pred HHHHHHHHHcCCCEEEE--------CCCCHHHHHHHHHHhhccCCC--eEEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 35567777899997763 223477888888877665664 456677777 99999999999999873
No 136
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.43 E-value=1.5 Score=38.72 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=55.6
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
..++++..+++++..+.|++..=||.-. ....+.|+++++++|++.|+.= -.++.++++..+++|.+-
T Consensus 16 ~~~~e~a~~~~~al~~~Gi~~iEit~~t---------~~a~~~i~~l~~~~~~~~vGAG---TVl~~~~a~~a~~aGA~F 83 (204)
T TIGR01182 16 IDDVDDALPLAKALIEGGLRVLEVTLRT---------PVALDAIRLLRKEVPDALIGAG---TVLNPEQLRQAVDAGAQF 83 (204)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCC---------ccHHHHHHHHHHHCCCCEEEEE---eCCCHHHHHHHHHcCCCE
Confidence 3688999999999999999988888732 1457788999988887655433 246899999999999987
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 84 i 84 (204)
T TIGR01182 84 I 84 (204)
T ss_pred E
Confidence 6
No 137
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=91.38 E-value=1.3 Score=39.96 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=49.5
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCC-CchHHHHHHHHHHHhhCC---CceEEEeecCCCCCHHHHHHHHhcC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD-GGSGHFARTVKAMKKQKP---DIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D-~ga~~~a~~Ir~Ik~~~p---~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
+.|+.|++..+..-. -+++++|.||.=+ ... .-+....+-|+++|+..+ ++.||+ ||-.+.+.++.+++||
T Consensus 116 lnP~Tp~~~i~~~l~-~vD~VllMsVnPG-fgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeV---DGGI~~~t~~~~~~AG 190 (220)
T COG0036 116 LNPATPLEALEPVLD-DVDLVLLMSVNPG-FGGQKFIPEVLEKIRELRAMIDERLDILIEV---DGGINLETIKQLAAAG 190 (220)
T ss_pred ECCCCCHHHHHHHHh-hCCEEEEEeECCC-CcccccCHHHHHHHHHHHHHhcccCCeEEEE---eCCcCHHHHHHHHHcC
Confidence 556666665555554 3789999999632 111 123455556666665544 344554 6888999999999999
Q ss_pred CCee
Q 026651 207 LDVF 210 (235)
Q Consensus 207 ~d~y 210 (235)
+|+|
T Consensus 191 ad~~ 194 (220)
T COG0036 191 ADVF 194 (220)
T ss_pred CCEE
Confidence 9986
No 138
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=91.33 E-value=1.4 Score=36.75 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=51.4
Q ss_pred eeeeeecCCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhh
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSRN---PAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~~---p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~ 179 (235)
.-+++|-=..|+-+|+||....... ...++.+++.+.-+... ..+..+++|-|. + -.+.+.+.++.+|+.
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE---l---~~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE---W---NREALLSLLKIFKEK 87 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh---c---CHHHHHHHHHHHHHC
Confidence 4567777778999999998762211 23588888877655443 235677778776 2 245788888888876
Q ss_pred CCCceEEEee
Q 026651 180 KPDIMVECLT 189 (235)
Q Consensus 180 ~p~~~ievl~ 189 (235)
. ..+.+-+
T Consensus 88 G--l~i~l~T 95 (147)
T TIGR02826 88 G--LKTCLYT 95 (147)
T ss_pred C--CCEEEEC
Confidence 3 3444444
No 139
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=91.31 E-value=1 Score=39.10 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=56.1
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHH-HHhcCCCee
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVET-LVHSGLDVF 210 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~-L~eAG~d~y 210 (235)
..++.+.|+...++|+++.++|+..++. ...|. ..+.+++|++.. .+-++++.|.-+.+.+++ |++.|++-+
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g-~~~g~--~~~~~~~i~~~~---~ipvia~GGi~s~~di~~~l~~~gadgV 224 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSIDRDG-TMKGY--DLELIKTVSDAV---SIPVIALGGAGSLDDLVEVALEAGASAV 224 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCCccC-CcCCC--CHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHHcCCCEE
Confidence 3457889999999999999999976642 22333 477788888753 467899999999999999 999998854
No 140
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=91.28 E-value=1.5 Score=34.84 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
+..+++.+.+.+++++.+... .-...+.+.++.+++..+. .+.+.+. |..-.+..++++++|+|.+=|
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~-----~~~~~~~~~~~~L~~~~~~-~i~i~~G-G~~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSG-----GHMTLFPEVIELLRELGAG-DILVVGG-GIIPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHcCCCEEEEcccch-----hhHHHHHHHHHHHHhcCCC-CCEEEEE-CCCCHHHHHHHHHCCCCEEEC
Confidence 455577788888888877643 2356677888888887553 3344432 344577899999999987644
No 141
>PRK08005 epimerase; Validated
Probab=91.02 E-value=1.5 Score=38.98 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCC-chHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~-ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
+.|..+.+..+.... -+++++|.||.=+ ...+ =.....+-|+++|+..++..|| =||-.+.+.+..|++||+|.
T Consensus 113 lnP~Tp~~~i~~~l~-~vD~VlvMsV~PG-f~GQ~f~~~~~~KI~~l~~~~~~~~I~---VDGGI~~~~i~~l~~aGad~ 187 (210)
T PRK08005 113 LNPATPLLPYRYLAL-QLDALMIMTSEPD-GRGQQFIAAMCEKVSQSREHFPAAECW---ADGGITLRAARLLAAAGAQH 187 (210)
T ss_pred ECCCCCHHHHHHHHH-hcCEEEEEEecCC-CccceecHHHHHHHHHHHHhcccCCEE---EECCCCHHHHHHHHHCCCCE
Confidence 566666665555443 4789999999532 1111 1223445556666655554333 37888999999999999997
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 188 ~ 188 (210)
T PRK08005 188 L 188 (210)
T ss_pred E
Confidence 6
No 142
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.81 E-value=0.85 Score=40.95 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhc
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
-.+.+.++...++|+...++|+..||....| .+ .+.++++.+.. .+.+.++-|..+.+.+.+|++.
T Consensus 144 ~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G-~d--~el~~~l~~~~---~~pviasGGv~s~~Dl~~l~~~ 209 (241)
T PRK14114 144 IDPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-HD--FSLTRKIAIEA---EVKVFAAGGISSENSLKTAQRV 209 (241)
T ss_pred CCHHHHHHHHHhcCCCEEEEEeechhhcCCC-cC--HHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHhc
Confidence 3566778899999999999999999854221 21 33455565542 5789999999999999999986
No 143
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=90.79 E-value=1.4 Score=42.14 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc--------C--CcEEEEEeecCCCCCCCchHHHHHHHHHHHhh
Q 026651 111 DTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW--------G--VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ 179 (235)
Q Consensus 111 ~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~--------G--l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~ 179 (235)
-.|+-+|.||+-.......-+..+|+++....++.. | ++.+|.++ -+.-|- -.+.+.+.++.+++.
T Consensus 111 vGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mG-mGEPL~--N~d~v~~al~~l~~~ 186 (372)
T PRK11194 111 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG-MGEPLL--NLNNVVPAMEIMLDD 186 (372)
T ss_pred CCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEec-CCcccc--CHHHHHHHHHHHhhh
Confidence 589999999984422212358889999887666543 2 44544444 343233 256667777777643
No 144
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.71 E-value=1.2 Score=39.78 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
-.+.+.++..+++|+...++|+.++|.... |.+ .+.++.+++. +. . +.++-|..+.+.+++|+++|++
T Consensus 146 ~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~-G~d--~el~~~~~~~-~~--~-viasGGv~s~~Dl~~l~~~G~~ 213 (232)
T PRK13586 146 MEVIDGIKKVNELELLGIIFTYISNEGTTK-GID--YNVKDYARLI-RG--L-KEYAGGVSSDADLEYLKNVGFD 213 (232)
T ss_pred CCHHHHHHHHHhcCCCEEEEecccccccCc-CcC--HHHHHHHHhC-CC--C-EEEECCCCCHHHHHHHHHCCCC
Confidence 367788889999999999999999985432 222 2235556543 32 3 6789999999999999999987
No 145
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=90.53 E-value=1.3 Score=38.82 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=59.5
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
.+++.+.|+...+.|++..+++...++. ...+. ..+.+++|++.. .+.+.+.-|..+.+.++.+.++|++.+-=
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~-~~~~~--~~~~i~~i~~~~---~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASS-EGRET--MLDVVERVAEEV---FIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCccc-ccCcc--cHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 5588889999999999999998888752 22333 457888888753 47889999999999999999999887644
Q ss_pred Cc
Q 026651 213 NI 214 (235)
Q Consensus 213 NL 214 (235)
|-
T Consensus 100 g~ 101 (243)
T cd04731 100 NS 101 (243)
T ss_pred Cc
Confidence 43
No 146
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=90.35 E-value=1.4 Score=43.51 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
++..+.+++..+.|++.++|=+- ++-...+.+.|+.||+.+|+ +.+.+ ++..+.|.++.|.++|+|.+.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a------~g~~~~~~~~i~~i~~~~~~--~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTA------HGHQVKMISAIKAVRALDLG--VPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCC------CCCcHHHHHHHHHHHHHCCC--CeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 46667788888899998777332 23347999999999998885 45666 668899999999999999987
No 147
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.25 E-value=1.5 Score=41.89 Aligned_cols=71 Identities=24% Similarity=0.292 Sum_probs=51.9
Q ss_pred CchhHHHHHHHHHH-cCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 132 DPMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 132 d~eE~~~~A~aa~~-~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.+++..++.+-++. .|+++++|=+- .+-.+.+.+.|+.||+.+|++ ++.+ --..+.|+++.|.+||+|.+
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~A------hGhs~~~i~~ik~ik~~~P~~--~vIa-GNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVA------NGYSEHFVQFVAKAREAWPDK--TICA-GNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECC------CCcHHHHHHHHHHHHHhCCCC--cEEE-ecccCHHHHHHHHHcCCCEE
Confidence 34555555555553 68999888544 445789999999999999964 4443 34568999999999999976
Q ss_pred c
Q 026651 211 A 211 (235)
Q Consensus 211 n 211 (235)
-
T Consensus 177 K 177 (346)
T PRK05096 177 K 177 (346)
T ss_pred E
Confidence 3
No 148
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.22 E-value=0.59 Score=40.19 Aligned_cols=82 Identities=23% Similarity=0.224 Sum_probs=55.9
Q ss_pred CCCchhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 130 PPDPMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
..+.+.+.+.|++..+.|+. ..|+|--.. ..+.+ +.++.||+.. .+-++.-+|..+.++++.+.++|.+
T Consensus 27 ~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~---~~g~~----~~~~~i~~~v---~iPi~~~~~i~~~~~v~~~~~~Gad 96 (217)
T cd00331 27 IREDFDPVEIAKAYEKAGAAAISVLTEPKY---FQGSL----EDLRAVREAV---SLPVLRKDFIIDPYQIYEARAAGAD 96 (217)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEeCccc---cCCCH----HHHHHHHHhc---CCCEEECCeecCHHHHHHHHHcCCC
Confidence 56788999999999999998 455554322 22223 4555665542 2334455788889999999999999
Q ss_pred eeccC-----cccccccc
Q 026651 209 VFAHN-----IETVKRLQ 221 (235)
Q Consensus 209 ~ynHN-----LETs~rlf 221 (235)
.++.. .++.++++
T Consensus 97 ~v~l~~~~~~~~~~~~~~ 114 (217)
T cd00331 97 AVLLIVAALDDEQLKELY 114 (217)
T ss_pred EEEEeeccCCHHHHHHHH
Confidence 99843 34555444
No 149
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=90.16 E-value=2.4 Score=38.16 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=52.8
Q ss_pred CCCCCchhHHHHHHHHHH-cCCcEEEEE--eecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 128 PAPPDPMEPENTAKAIAS-WGVDYIVLT--SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 128 p~~ld~eE~~~~A~aa~~-~Gl~y~VVT--Sg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
+.+++.+++...|..|.+ +|.+++-+= |+..+..+ .+.|+++|+... .+-+.+..|.=+.|+++.+.+
T Consensus 129 ~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~-------~e~i~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~ 199 (223)
T TIGR01768 129 PIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVP-------PELVAEVKKVLD--KARLFVGGGIRSVEKAREMAE 199 (223)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcC-------HHHHHHHHHHcC--CCCEEEecCCCCHHHHHHHHH
Confidence 446888888877776666 788876663 34332222 456777776543 356677899999999999999
Q ss_pred cCCCee
Q 026651 205 SGLDVF 210 (235)
Q Consensus 205 AG~d~y 210 (235)
+|+|++
T Consensus 200 aGAD~V 205 (223)
T TIGR01768 200 AGADTI 205 (223)
T ss_pred cCCCEE
Confidence 999876
No 150
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=90.11 E-value=1.5 Score=40.28 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
-.+.+.+....+.|+...++|++.||..-. |.+ .+.++.|.+. +.+.+.+|-|..+.+.+++|++.|
T Consensus 163 ~~~~e~~~~~~~~g~~eii~TdI~rDGtl~-G~d--~el~~~l~~~---~~ipVIASGGv~sleDi~~L~~~g 229 (262)
T PLN02446 163 LAVDEETLEFLAAYCDEFLVHGVDVEGKRL-GID--EELVALLGEH---SPIPVTYAGGVRSLDDLERVKVAG 229 (262)
T ss_pred CCHHHHHHHHHHhCCCEEEEEEEcCCCccc-CCC--HHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHcC
Confidence 345556677888899999999999985321 222 4555666654 357899999999999999999986
No 151
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=90.06 E-value=1.4 Score=41.28 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=73.3
Q ss_pred CCccceeCCCCCCceeeeeeecCC-CCCCCCCCcccCC-----CCCCCCCCchhHHHHHHHHHHc------CCcEEEEEe
Q 026651 88 PNIGECWNGGGDGIATATIMLLGD-TCTRGCRFCAVKT-----SRNPAPPDPMEPENTAKAIASW------GVDYIVLTS 155 (235)
Q Consensus 88 PNi~ec~~~~~~~~~taT~mIlG~-~CtedC~FCAQSt-----~~~p~~ld~eE~~~~A~aa~~~------Gl~y~VVTS 155 (235)
+..+-|+-.+.-|+.-..-|+=.. .|+.||-||-... ...|.++.++.+.+.-+..... ..+|+-++-
T Consensus 8 ~~~~gp~ksrryG~slgi~~tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~ 87 (296)
T COG0731 8 PIVFGPVKSRRYGISLGIQMTPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISL 87 (296)
T ss_pred cCCCCCccccccccccCCccccchhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeC
Confidence 455666666655666665666677 9999999999841 1123468888888776666655 345654433
Q ss_pred ecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcc
Q 026651 156 VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (235)
Q Consensus 156 g~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLE 215 (235)
.-=+.|.. ++-+.|+.+|+... . --++++.|.+ ++-++.|. -+|.+-=-|+
T Consensus 88 ~GEPTLy~----~L~elI~~~k~~g~-~-~tflvTNgsl-pdv~~~L~--~~dql~~sLd 138 (296)
T COG0731 88 SGEPTLYP----NLGELIEEIKKRGK-K-TTFLVTNGSL-PDVLEELK--LPDQLYVSLD 138 (296)
T ss_pred CCCccccc----CHHHHHHHHHhcCC-c-eEEEEeCCCh-HHHHHHhc--cCCEEEEEec
Confidence 32334433 66777778877542 1 3567788887 67777776 3444433333
No 152
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=89.93 E-value=1.2 Score=39.48 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=53.9
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.++.+|+.+.++.+.+.|++|+-..+|... +++. .+-++.|++..++ .+.+-++-|.-+.+++..+.++|.+|
T Consensus 128 ~L~~~ei~~a~~ia~eaGADfvKTsTGf~~----~gat--~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~r 200 (211)
T TIGR00126 128 LLTDEEIRKACEICIDAGADFVKTSTGFGA----GGAT--VEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASR 200 (211)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCC----CCCC--HHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHH
Confidence 377789999999999999999877666431 1110 1222333332222 47889999999999999999999998
Q ss_pred ec
Q 026651 210 FA 211 (235)
Q Consensus 210 yn 211 (235)
+.
T Consensus 201 iG 202 (211)
T TIGR00126 201 IG 202 (211)
T ss_pred hC
Confidence 75
No 153
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.89 E-value=1.5 Score=39.78 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=56.8
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCC------CchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D------~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
++.++..+.|+...+.|++|+.|+++....... ..-....+.++.||+.. .+-+.+.-+.-+.+.++++.+
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV---KIPVIAVGGIRDPEVAEEILA 301 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHH
Confidence 577899999999999999999998886532111 11234556778888754 356677777778999999999
Q ss_pred c-CCCee
Q 026651 205 S-GLDVF 210 (235)
Q Consensus 205 A-G~d~y 210 (235)
+ |+|.+
T Consensus 302 ~g~aD~V 308 (327)
T cd02803 302 EGKADLV 308 (327)
T ss_pred CCCCCee
Confidence 8 67764
No 154
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=89.83 E-value=1.5 Score=37.86 Aligned_cols=74 Identities=11% Similarity=-0.026 Sum_probs=53.2
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCC-CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL-~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
.++++++.+.++.+.++|++|+=..+|....- .-+.+.-|.++++ ..+.+.++-|.-+.+++..+.++|.+
T Consensus 127 ~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~--------~~v~ik~aGGikt~~~~l~~~~~g~~ 198 (203)
T cd00959 127 LLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG--------GRVGVKAAGGIRTLEDALAMIEAGAT 198 (203)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC--------CCceEEEeCCCCCHHHHHHHHHhChh
Confidence 35678999999999999999887766643100 1112233333332 24788899999999999999999999
Q ss_pred eec
Q 026651 209 VFA 211 (235)
Q Consensus 209 ~yn 211 (235)
|+.
T Consensus 199 riG 201 (203)
T cd00959 199 RIG 201 (203)
T ss_pred hcc
Confidence 874
No 155
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.43 E-value=1.7 Score=38.97 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHH-hcCCCee
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV-HSGLDVF 210 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~-eAG~d~y 210 (235)
...+.+.++...++|+..+++|+.+++..- .|. -.+.++++++. +.+-+.++-|..+.+.++.+. ..|++-.
T Consensus 151 ~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~-~G~--d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgV 223 (258)
T PRK01033 151 KKDPLELAKEYEALGAGEILLNSIDRDGTM-KGY--DLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAA 223 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEccCCCCCc-CCC--CHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEE
Confidence 345678888999999999999999987543 222 34555666654 357889999999999999988 7888743
No 156
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=89.43 E-value=3.4 Score=39.02 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=54.1
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc-CCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhC-C-----
Q 026651 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW-GVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-P----- 181 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~-Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~-p----- 181 (235)
--.|+-+|.||+-.......-+..+|+++.....+.. +-+ -.|||.|-+.-|- -.+.+.+.++.+++.. -
T Consensus 108 qvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLl--n~d~v~~~l~~l~~~~gi~~~~r 185 (342)
T PRK14454 108 QVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLD--NYENVMKFLKIVNSPYGLNIGQR 185 (342)
T ss_pred CCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhc--CHHHHHHHHHHHhcccccCcCCC
Confidence 4589999999985422212358999999988777652 212 2566655453233 3667788888887631 1
Q ss_pred CceEEEeecCCCCCHHHHHHHHhcCC
Q 026651 182 DIMVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 182 ~~~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
.+.|+. + |.. ..+.+|.+.++
T Consensus 186 ~itvsT--s-G~~--p~i~~l~~~~~ 206 (342)
T PRK14454 186 HITLST--C-GIV--PKIYELADENL 206 (342)
T ss_pred ceEEEC--c-CCh--hHHHHHHhhcc
Confidence 123332 2 322 34677777654
No 157
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=89.24 E-value=3.1 Score=38.84 Aligned_cols=68 Identities=26% Similarity=0.352 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+-.+.++++.+.|+++++|++..++ .+.+.+.|++||+..|+ +.+.+ ....+.+.++.|.++|+|.+-
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~------~~~~~~~i~~ik~~~p~--v~Vi~-G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGH------SVYVIEMIKFIKKKYPN--VDVIA-GNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCC------cHHHHHHHHHHHHHCCC--ceEEE-CCCCCHHHHHHHHhcCCCEEE
Confidence 3456677888889998888664331 25788899999998874 34443 344689999999999999874
No 158
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=89.15 E-value=2.6 Score=36.24 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=46.8
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 140 A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
++.+.++|++|..+|+.+...+ .-++ +.++++++..| ..+-+++.-|.-+.+.+++++++|.+.+
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~-~~~~----~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~~~Ga~gv 198 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTF-EVDL----NTTERLAPLIP-KDVILVSESGISTPEDVKRLAEAGADAV 198 (217)
T ss_pred HHHHHHcCCCEEEEeCCCcccc-CcCH----HHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHHHcCCCEE
Confidence 5667788999999995543222 2222 55677776543 2467888899999999999999998754
No 159
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=89.03 E-value=2.1 Score=40.62 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc--CCc-EEEEEeecCCCCCCCchHHHHHHHHHHHh
Q 026651 110 GDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW--GVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~--Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~ 178 (235)
-..|+-+|.||+-.+.....-+..+|+++....++.. +-+ -.||-||-+.-|- -.+.+.++++.+++
T Consensus 106 q~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~--N~d~v~~~l~~l~~ 175 (348)
T PRK14467 106 QVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLA--NYENVRKAVQIMTS 175 (348)
T ss_pred CCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhc--CHHHHHHHHHHHcC
Confidence 4589999999996532212368899999887776653 112 4567777663232 36788888888865
No 160
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=88.94 E-value=1.7 Score=39.01 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=53.4
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh---cCCC
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH---SGLD 208 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e---AG~d 208 (235)
....+.+.++...++|+...++|+++||.... |.+ .+.++++++. +.+.+.++-|..+.+.+++|++ +|++
T Consensus 147 ~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~-G~d--~~l~~~l~~~---~~~pviasGGv~s~eDl~~l~~l~~~Gv~ 220 (243)
T TIGR01919 147 GGGDLEVLERLLDSGGCSRVVVTDSKKDGLSG-GPN--ELLLEVVAAR---TDAIVAASGGSSLLDDLRAIKYLDEGGVS 220 (243)
T ss_pred CCCcHHHHHHHHHhCCCCEEEEEecCCcccCC-CcC--HHHHHHHHhh---CCCCEEEECCcCCHHHHHHHHhhccCCee
Confidence 34467788889999999999999999985432 222 3455666654 2578999999999999999864 4665
No 161
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.89 E-value=3.2 Score=36.70 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=54.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
..++++..+++++..+.|++.+=||--.- ...+.|+++++++|++.|+.=+ .++.|+++..+++|.+-
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~tp---------~a~~~I~~l~~~~~~~~vGAGT---Vl~~e~a~~ai~aGA~F 79 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRTP---------AALDAIRAVAAEVEEAIVGAGT---ILNAKQFEDAAKAGSRF 79 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHCCCCEEeeEe---CcCHHHHHHHHHcCCCE
Confidence 36789999999999999999877776421 3467888898888876554332 46899999999999975
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 80 i 80 (201)
T PRK06015 80 I 80 (201)
T ss_pred E
Confidence 4
No 162
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=88.76 E-value=1.6 Score=37.37 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhc-CCCee
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-GLDVF 210 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA-G~d~y 210 (235)
++..+.++...+.|+++..|+.+.++....++. ..+.++.|++. ..+-+++.-|..+.+++.++.++ |+|.+
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~--~~~~~~~i~~~---~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSGPA--DWDYIAEIKEA---VSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCC--CHHHHHHHHhC---CCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 588999999999999999998876532111111 23556777763 35778888889899999999998 77754
No 163
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=88.71 E-value=2 Score=38.18 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
...|.+.|+...+.|++...|+--+++. .+-..-.+.|++|++.. .+.+.+.-|.-+.+.++++.++|++++-=
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~---~~~~~n~~~i~~i~~~~---~~pv~~~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASS---EGRTTMIDVVERTAETV---FIPLTVGGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCccc---ccChhhHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4478888999999999988887776641 23445678888888753 46788889999999999999999988765
Q ss_pred Cccc
Q 026651 213 NIET 216 (235)
Q Consensus 213 NLET 216 (235)
+-++
T Consensus 103 gt~~ 106 (254)
T TIGR00735 103 NTAA 106 (254)
T ss_pred ChhH
Confidence 5444
No 164
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.34 E-value=3.2 Score=38.53 Aligned_cols=64 Identities=17% Similarity=0.346 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
.+.|+.+.+.|++|+.+- .-+.+.+.++++.+|+..|.+ -+.++-|. +.+.+..++++|+|++.
T Consensus 206 leea~eA~~~GaD~I~LD--------n~~~e~l~~av~~~~~~~~~i--~leAsGGI-t~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD--------NMPVDLMQQAVQLIRQQNPRV--KIEASGNI-TLETIRAVAETGVDYIS 269 (288)
T ss_pred HHHHHHHHHcCCCEEEEC--------CCCHHHHHHHHHHHHhcCCCe--EEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 345666678999998764 334677888888887766654 45555555 99999999999999874
No 165
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=88.34 E-value=6.5 Score=36.34 Aligned_cols=112 Identities=12% Similarity=0.154 Sum_probs=70.8
Q ss_pred CCCCCCCCCCcccCCCCC------CCCCCchhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhC-
Q 026651 110 GDTCTRGCRFCAVKTSRN------PAPPDPMEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQK- 180 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~~------p~~ld~eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~- 180 (235)
...|.=+|.||-+..... ...++.+.+.++.+.+.+.+.. .+..|-|- + |-.. .+.+.+.++.+++..
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGE-P-ll~~-~~~~~~~~~~~~~~~~ 88 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGE-P-TLAG-LEFFEELMELQRKHNY 88 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCc-c-ccCC-hHHHHHHHHHHHHhcc
Confidence 379999999999863110 1246777777777766554422 34455442 2 2211 234566777776642
Q ss_pred CCce--EEEeecCCCCCHHHHHHHHhcCCCeeccCcccccccccccc
Q 026651 181 PDIM--VECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR 225 (235)
Q Consensus 181 p~~~--ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rlfp~Vc 225 (235)
.... +.+.+...+++++-++.|++.|+ .+.=-|+..+..+...|
T Consensus 89 ~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R 134 (370)
T PRK13758 89 KNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNR 134 (370)
T ss_pred CCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhcccc
Confidence 2222 45666666789999999999987 77778888777666666
No 166
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=88.27 E-value=2.4 Score=37.95 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=53.9
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
+..+++++...|.+++.+|++.+-+- +.+.. .+ .+.|+++++... .+-+.+..|.-+.|+++.++++|.|
T Consensus 130 ~~~~~e~~~ayA~aae~~g~~ivyLe-~SG~~-~~------~e~I~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD 199 (219)
T cd02812 130 TDLKPEDAAAYALAAEYLGMPIVYLE-YSGAY-GP------PEVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGAD 199 (219)
T ss_pred cCCCHHHHHHHHHHHHHcCCeEEEeC-CCCCc-CC------HHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 37899999999999999997755554 32221 22 566777776432 3567788899999999999999998
Q ss_pred ee
Q 026651 209 VF 210 (235)
Q Consensus 209 ~y 210 (235)
++
T Consensus 200 ~V 201 (219)
T cd02812 200 TI 201 (219)
T ss_pred EE
Confidence 75
No 167
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=87.95 E-value=3 Score=37.58 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCch-HHHHHHHHHHHhh----CCCceEEEeecCCCCCHHHHHHHHhc
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGS-GHFARTVKAMKKQ----KPDIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga-~~~a~~Ir~Ik~~----~p~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
+.|+.+.+..+..-. -+++++|.||.=+ ...+.+ ....+-|+++|+. ..++.||+ ||-.+.+.++++++|
T Consensus 125 lnP~Tp~~~i~~~l~-~vD~VLiMtV~PG-fgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV---DGGI~~~ti~~l~~a 199 (228)
T PRK08091 125 LCPETPISLLEPYLD-QIDLIQILTLDPR-TGTKAPSDLILDRVIQVENRLGNRRVEKLISI---DGSMTLELASYLKQH 199 (228)
T ss_pred ECCCCCHHHHHHHHh-hcCEEEEEEECCC-CCCccccHHHHHHHHHHHHHHHhcCCCceEEE---ECCCCHHHHHHHHHC
Confidence 566666665554444 2789999999532 222111 1233344444433 22333443 788899999999999
Q ss_pred CCCee
Q 026651 206 GLDVF 210 (235)
Q Consensus 206 G~d~y 210 (235)
|+|++
T Consensus 200 GaD~~ 204 (228)
T PRK08091 200 QIDWV 204 (228)
T ss_pred CCCEE
Confidence 99976
No 168
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.92 E-value=2.7 Score=36.52 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.+.+.|+.+.++|++.+++|+.+++... .+. -.+.++++++.. .+-+.+.-|.-+.+.+..++++|++.+
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~--~~~~i~~i~~~~---~iPvia~GGI~~~~di~~~~~~Ga~gv 219 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTNVDVEGLL-EGV--NTEPVKELVDSV---DIPVIASGGVTTLDDLRALKEAGAAGV 219 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCCc-CCC--CHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 6788899999999999999988765221 222 134566666643 467899999999999999999999864
No 169
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=87.90 E-value=8 Score=38.76 Aligned_cols=145 Identities=14% Similarity=0.226 Sum_probs=85.3
Q ss_pred ccHHHHHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeeecCC--CCC-CCCCCccc---------C-CCCCCC-
Q 026651 64 QRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGD--TCT-RGCRFCAV---------K-TSRNPA- 129 (235)
Q Consensus 64 ~~~~~~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIlG~--~Ct-edC~FCAQ---------S-t~~~p~- 129 (235)
+....++.+|+....-|. . ++|++.||.. .|| -+|-||-- | ++.-|.
T Consensus 46 ~~~~~~~~~l~~kp~rt~--------------s-----gv~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~ 106 (522)
T TIGR01211 46 EEKKKLEPILRKKPVRTI--------------S-----GVAVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAA 106 (522)
T ss_pred HHHHHHHHHHhcCCcccc--------------c-----CeEEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHh
Confidence 345566677766555553 1 2677777744 899 57999973 3 233332
Q ss_pred ------CCCc-hhHHHHHHHHHHcC--CcEE--EEEeecCCCCCCCchHHHHHHHHHHHhhCC-----------------
Q 026651 130 ------PPDP-MEPENTAKAIASWG--VDYI--VLTSVDRDDIPDGGSGHFARTVKAMKKQKP----------------- 181 (235)
Q Consensus 130 ------~ld~-eE~~~~A~aa~~~G--l~y~--VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p----------------- 181 (235)
.+|| +++..-.+..+++| ++.+ ++--|+=-.++..-.+.|. +.+.+..+
T Consensus 107 ~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl---~~~~~a~~~~~~~~~~~~~~~~~~~ 183 (522)
T TIGR01211 107 MRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFI---KRCLNAMNGFDQELKGNSTLEEAIR 183 (522)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHH---HHHHHHhccccccccccchHHHHHH
Confidence 2343 55555567777777 3333 5666654445544344444 43333221
Q ss_pred ----------CceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccccc-cccccCCCCcccc
Q 026651 182 ----------DIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL-QRIVRDPRAGLVM 233 (235)
Q Consensus 182 ----------~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rl-fp~Vcdtth~Y~~ 233 (235)
.++||. =||.. +++.|+.|+++|++++.-.+||.-.- ...|. ..|+.++
T Consensus 184 ~ne~a~~~~vgitiEt-RPD~i-~~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rght~~~ 243 (522)
T TIGR01211 184 INETSKHRCVGLTIET-RPDYC-REEHIDRMLKLGATRVELGVQTIYNDILERTK-RGHTVRD 243 (522)
T ss_pred hhhcccCCeEEEEEEE-cCCcC-CHHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CCCCHHH
Confidence 123443 34443 89999999999999999999986432 33444 5666544
No 170
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.76 E-value=2.2 Score=37.11 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
..|.+.|+...+.|+++..+..-+. ...+.....+.|++|.+.. .+.+.+.-|.-+.+.++.+.++|+++++=+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~---~~~~~~~~~~~i~~i~~~~---~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDG---AFEGERKNAEAIEKIIEAV---GVPVQLGGGIRSAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechh---hhcCCcccHHHHHHHHHHc---CCcEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 4688889999999999766654432 3345566678888887754 356677778889999999999999987655
Q ss_pred ccc
Q 026651 214 IET 216 (235)
Q Consensus 214 LET 216 (235)
=+.
T Consensus 106 s~~ 108 (241)
T PRK13585 106 TAA 108 (241)
T ss_pred hHH
Confidence 433
No 171
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=87.57 E-value=3.1 Score=40.43 Aligned_cols=67 Identities=25% Similarity=0.315 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+-.+.|++..+.|++.++|++-.+ ....+.+.|+.||+.+|++. +.+ -...+.++++.|.++|+|.+
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g------~~~~~~~~i~~i~~~~~~~~--vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG------HSIYVIDSIKEIKKTYPDLD--IIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC------cHhHHHHHHHHHHHhCCCCC--EEE-EeCCCHHHHHHHHHhCCCEE
Confidence 445667788889999988876543 23578899999999888543 333 34558999999999999998
No 172
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=87.47 E-value=4.2 Score=34.53 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=53.4
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.++++..+.++++.+.|++.+.||.-+. ...+.++.|++..|+..++.- -.++.++++.+.++|.+.+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag---~v~~~~~~~~a~~~Ga~~i 80 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAG---TVLTPEQADAAIAAGAQFI 80 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEE---eCCCHHHHHHHHHcCCCEE
Confidence 5789999999999999999888886432 145589999988885543321 1346999999999999988
Q ss_pred c
Q 026651 211 A 211 (235)
Q Consensus 211 n 211 (235)
|
T Consensus 81 ~ 81 (190)
T cd00452 81 V 81 (190)
T ss_pred E
Confidence 5
No 173
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=87.42 E-value=1 Score=43.34 Aligned_cols=109 Identities=16% Similarity=0.294 Sum_probs=68.3
Q ss_pred eecCCCCccHHHHHHHHccCChHhhhhhcCC--CCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCCCCCC--CCCC
Q 026651 57 RQKAPQGQRFQEVKESLSSLKLNTVCEEAQC--PNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNP--APPD 132 (235)
Q Consensus 57 k~~~~~~~~~~~~~~~l~~~~L~TVCeeA~C--PNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt~~~p--~~ld 132 (235)
|+-+|....+.+.. ....+-+.|-+.+ |.+..-|-.+ + .|+..+.|+-.|+||--+..-.+ ..+.
T Consensus 74 rQviP~~~El~~~~----~~~~Dpl~E~~~s~Vpgl~HrY~dr------v-Lll~t~~C~vyCRyCfRr~~~~~~~~~~~ 142 (369)
T COG1509 74 RQVIPSEDELEKAP----GESEDPLGEDDSSPVPGLTHRYPDR------V-LLLVTGVCAVYCRYCFRRRFVGQDNQGFN 142 (369)
T ss_pred hhcCCCHHHHhhcc----ccccCcccccccCCCCCceeecCCe------E-EEEecCcccceeeecccccccccccccCC
Confidence 45566554443332 2234445666654 4555566543 2 33338999999999998831111 2356
Q ss_pred chhHHHHHHHHHHcC-CcEEEEEeecCCCCCCCchHHHHHHHHHH
Q 026651 133 PMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAM 176 (235)
Q Consensus 133 ~eE~~~~A~aa~~~G-l~y~VVTSg~RddL~D~ga~~~a~~Ir~I 176 (235)
+++...+....++.- ++-+++|.|+-..|+|..++.+.+.+++|
T Consensus 143 ~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~I 187 (369)
T COG1509 143 KEEWDKALDYIAAHPEIREVLLSGGDPLSLSDKKLEWLLKRLRAI 187 (369)
T ss_pred HHHHHHHHHHHHcCchhheEEecCCCccccCHHHHHHHHHHHhcC
Confidence 777777766777666 57899999998777887666666666555
No 174
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=87.39 E-value=3.2 Score=39.70 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHH-cCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCC-CCCHHHHHHHHhcCCCee
Q 026651 133 PMEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF-RGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 133 ~eE~~~~A~aa~~-~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg-~l~~e~l~~L~eAG~d~y 210 (235)
+++..++..-+++ .|+++++|=+- .+-...+.+.|+.||+..|+. .+++ | .++.|.++.|.+||+|.+
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD~A------hGhs~~~i~~ik~ir~~~p~~--~via--GNV~T~e~a~~Li~aGAD~i 175 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLDVA------NGYSEHFVEFVKLVREAFPEH--TIMA--GNVVTGEMVEELILSGADIV 175 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECC------CCcHHHHHHHHHHHHhhCCCC--eEEE--ecccCHHHHHHHHHcCCCEE
Confidence 3444444333333 25889887544 344789999999999998853 4443 4 678999999999999987
No 175
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=87.39 E-value=2.9 Score=39.29 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=65.8
Q ss_pred CCCCchhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCC----CCCHHHHHHH
Q 026651 129 APPDPMEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDF----RGDLRAVETL 202 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg----~l~~e~l~~L 202 (235)
.|+.|+|+.+.|.++.+.|+. |+=|- ..|.-+..+.+.+.+++.+||+..+++-|.+-+..| ...+|.+. .
T Consensus 24 lP~TP~qIA~~a~~aa~AGAai~HlHvR--p~dG~pt~d~~~yr~~l~rIr~~~~D~vin~ttg~g~~~~~~~~er~~-~ 100 (298)
T COG3246 24 LPVTPDQIASDAIAAAKAGAAILHLHVR--PEDGRPTLDPEAYREVLERIRAAVGDAVINLTTGEGGDLVMPTEERAS-P 100 (298)
T ss_pred CCCCHHHHHHHHHHHHhcCcceEEEEec--CCCCCcccCHHHHHHHHHHHHccCCCeEEEeccccccccccchhhhcc-c
Confidence 379999999999999999987 66665 344456778999999999999987776665554443 23455544 6
Q ss_pred HhcCCCeeccCccc-----ccccccccc
Q 026651 203 VHSGLDVFAHNIET-----VKRLQRIVR 225 (235)
Q Consensus 203 ~eAG~d~ynHNLET-----s~rlfp~Vc 225 (235)
....++..+-|+-+ +..++|.+|
T Consensus 101 ~~~~Pe~~~~~~~~~~~~~v~el~~e~~ 128 (298)
T COG3246 101 WALRPEALSMNLSEFRLPHVLELLPEIG 128 (298)
T ss_pred cccCCccccccccccccHHHHHHhHHhh
Confidence 66777765555432 335666665
No 176
>PRK01254 hypothetical protein; Provisional
Probab=87.31 E-value=5.6 Score=41.42 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=60.7
Q ss_pred eecCCCCCCCCCCcccCCCCCC--CCCCchhHHHHHHHHHHc--CCcEEE--EEeec----C------------------
Q 026651 107 MLLGDTCTRGCRFCAVKTSRNP--APPDPMEPENTAKAIASW--GVDYIV--LTSVD----R------------------ 158 (235)
Q Consensus 107 mIlG~~CtedC~FCAQSt~~~p--~~ld~eE~~~~A~aa~~~--Gl~y~V--VTSg~----R------------------ 158 (235)
+.+...|.-+|.||+...+.-. .--+.+++++.|+...+. |.+-.+ |++-+ +
T Consensus 376 V~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~Cl 455 (707)
T PRK01254 376 VNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLSCV 455 (707)
T ss_pred EEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccccccc
Confidence 3347899999999999943212 246789999999998864 776444 22211 1
Q ss_pred -----CCCCCCchHHHHHHHHHHHhhCCCc-eEEEeec--CCC--CCHHHHHHHHhcCCC
Q 026651 159 -----DDIPDGGSGHFARTVKAMKKQKPDI-MVECLTS--DFR--GDLRAVETLVHSGLD 208 (235)
Q Consensus 159 -----ddL~D~ga~~~a~~Ir~Ik~~~p~~-~ievl~s--dg~--l~~e~l~~L~eAG~d 208 (235)
++| +.+-..+.+.+++|++ .|++ .|-+... ..+ .+++-++.|++.++-
T Consensus 456 ~P~~C~nL-~~dh~~l~eLLrkLr~-IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~ 513 (707)
T PRK01254 456 YPDICPHL-DTDHEPTINLYRRARD-LKGIKKILIASGVRYDLAVEDPRYVKELVTHHVG 513 (707)
T ss_pred Cccccccc-CCCHHHHHHHHHHHHh-CCCceEEEEEcCCCccccccCHHHHHHHHHhCCc
Confidence 112 1223578888888885 4444 2333322 222 257788888885544
No 177
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=87.30 E-value=2.7 Score=36.97 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=51.3
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
..+.++..+++++..+.|++..=||--. + ...+.|+.++++.|++.|+.=+ .++.|+++..+++|.+-
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~t----~-----~a~~~I~~l~~~~p~~~vGAGT---V~~~e~a~~a~~aGA~F 83 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLRT----P-----NALEAIEALRKEFPDLLVGAGT---VLTAEQAEAAIAAGAQF 83 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETTS----T-----THHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCC----c-----cHHHHHHHHHHHCCCCeeEEEe---ccCHHHHHHHHHcCCCE
Confidence 4678999999999999999988888643 1 2467888999889987665432 46899999999999975
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 84 i 84 (196)
T PF01081_consen 84 I 84 (196)
T ss_dssp E
T ss_pred E
Confidence 4
No 178
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=87.28 E-value=3.2 Score=36.98 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=55.4
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.|+.+|+.++++.+.+.|++|+-...|. ..+| .=.+.|+.|++..+ -.+.+=++-|.-+.+++..+.+||.+|
T Consensus 132 ~L~~e~i~~a~~~~~~agadfIKTsTG~----~~~g--at~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~r 204 (221)
T PRK00507 132 LLTDEEKVKACEIAKEAGADFVKTSTGF----STGG--ATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATR 204 (221)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCC--CCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcce
Confidence 5888999999999999999965543442 1222 11355556655432 247888999999999999999999999
Q ss_pred ec
Q 026651 210 FA 211 (235)
Q Consensus 210 yn 211 (235)
+.
T Consensus 205 iG 206 (221)
T PRK00507 205 LG 206 (221)
T ss_pred Ec
Confidence 85
No 179
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=87.25 E-value=3.4 Score=36.64 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=49.0
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCc---hHHHHHHHHHHHhhCC--CceEEEeecCCCCCHHHHHHHHh
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---SGHFARTVKAMKKQKP--DIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~g---a~~~a~~Ir~Ik~~~p--~~~ievl~sdg~l~~e~l~~L~e 204 (235)
.+.|..|.+..+.... -+++++|.|+.-+ -+| ...-.+.|+++|+..+ +..+.+.+ ||-.+.+.+..|++
T Consensus 112 alnP~Tp~~~i~~~l~-~~D~vlvMtV~PG---fgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~ 186 (220)
T PRK08883 112 VLNPATPLHHLEYIMD-KVDLILLMSVNPG---FGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAE 186 (220)
T ss_pred EeCCCCCHHHHHHHHH-hCCeEEEEEecCC---CCCceecHhHHHHHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHH
Confidence 4677777776665544 3789999888642 222 2233445555554432 12244444 88889999999999
Q ss_pred cCCCee
Q 026651 205 SGLDVF 210 (235)
Q Consensus 205 AG~d~y 210 (235)
||+|.+
T Consensus 187 aGAd~v 192 (220)
T PRK08883 187 AGADMF 192 (220)
T ss_pred cCCCEE
Confidence 999976
No 180
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=87.18 E-value=2.3 Score=36.62 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=54.9
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
....+|.+.|+...+.|++...|.--++ . ..+.....+.+++|++.. .+.+.+..|.-+.++++++.++|++..
T Consensus 26 ~~~~dp~~~a~~~~~~g~d~l~v~dl~~--~-~~~~~~~~~~i~~i~~~~---~~pv~~~GgI~~~e~~~~~~~~Gad~v 99 (234)
T cd04732 26 VYSDDPVEVAKKWEEAGAKWLHVVDLDG--A-KGGEPVNLELIEEIVKAV---GIPVQVGGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred EECCCHHHHHHHHHHcCCCEEEEECCCc--c-ccCCCCCHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 3456889999999999998655542222 1 122344567888888754 467888899999999999999999876
Q ss_pred c
Q 026651 211 A 211 (235)
Q Consensus 211 n 211 (235)
-
T Consensus 100 v 100 (234)
T cd04732 100 I 100 (234)
T ss_pred E
Confidence 4
No 181
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.10 E-value=2.1 Score=38.00 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.+.+.++.+++. +...++|+++||. ...|.+.+.+ ..+ .+.+.++-|..+.+.+.+|+++|++-
T Consensus 144 ~~~~~~~~~~~~-~~~ii~t~i~~dG-t~~G~d~l~~-------~~~--~~pviasGGv~~~~Dl~~l~~~g~~g 207 (228)
T PRK04128 144 KVEDAYEMLKNY-VNRFIYTSIERDG-TLTGIEEIER-------FWG--DEEFIYAGGVSSAEDVKKLAEIGFSG 207 (228)
T ss_pred CHHHHHHHHHHH-hCEEEEEeccchh-cccCHHHHHH-------hcC--CCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 445556666666 7899999999975 3445662222 222 47899999999999999999999873
No 182
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.09 E-value=4.7 Score=35.70 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=53.8
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
..++++..+++++..+.|++..=||- +. + ...+.|+++++++|++.|. -+-.++.++++..++||.+-
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl-~~----~----~~~~~I~~l~~~~p~~~IG---AGTVl~~~~a~~a~~aGA~F 90 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTL-RT----P----AALEAIRLIAKEVPEALIG---AGTVLNPEQLAQAIEAGAQF 90 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEec-CC----c----cHHHHHHHHHHHCCCCEEE---EeeccCHHHHHHHHHcCCCE
Confidence 47889999999999999999877872 21 1 3467888999889975443 24456899999999999875
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 91 i 91 (212)
T PRK05718 91 I 91 (212)
T ss_pred E
Confidence 4
No 183
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.01 E-value=2.9 Score=40.66 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+-.+.++++.+.|+++++|=+..+ .-..+.+.|+.||+..|++. +.+. +..+.+.++.|.++|+|.+-
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g------~~~~~~~~v~~ik~~~p~~~--vi~g-~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHG------HSTRIIELVKKIKTKYPNLD--LIAG-NIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCC------CChhHHHHHHHHHhhCCCCc--EEEE-ecCCHHHHHHHHHcCCCEEE
Confidence 356778888889999888733322 24678899999999998653 3322 33489999999999999976
No 184
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=87.00 E-value=4 Score=40.38 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
..+.|++..+.|++.++|++-..+ .....+.|+.||+..|+ +.+.+ -...+.++++.|.+||+|.+
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~--~~v~a-G~V~t~~~a~~~~~aGad~I 307 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPH--VDIIA-GNVVTADQAKNLIDAGADGL 307 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCC--ceEEE-CCcCCHHHHHHHHHcCCCEE
Confidence 378888999999999998775332 23447899999998885 44444 24568999999999999987
No 185
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=86.83 E-value=2.1 Score=41.45 Aligned_cols=105 Identities=12% Similarity=0.223 Sum_probs=58.4
Q ss_pred CCCCCCCCCcccCCCCCC--CCCCc--h-hHHHHHHHHHHcCCc----EEEEEeecCCCCCCCchHHHHHHHHHHHh-hC
Q 026651 111 DTCTRGCRFCAVKTSRNP--APPDP--M-EPENTAKAIASWGVD----YIVLTSVDRDDIPDGGSGHFARTVKAMKK-QK 180 (235)
Q Consensus 111 ~~CtedC~FCAQSt~~~p--~~ld~--e-E~~~~A~aa~~~Gl~----y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~-~~ 180 (235)
-=|..-|.||+-.+.... .+.+. + =+.+.+..+...|.+ -+-+=.|+=--|+.++++.+.+.|++.-. ..
T Consensus 42 PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~ 121 (416)
T COG0635 42 PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRELFNDLD 121 (416)
T ss_pred ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHHhcccCC
Confidence 469999999998742211 11111 0 011222233333332 22233333112355555555555554431 22
Q ss_pred --CCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc
Q 026651 181 --PDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV 217 (235)
Q Consensus 181 --p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs 217 (235)
-+++||+ .-+..+.+.++.++++|+.|+.=++.+-
T Consensus 122 ~~~EitiE~--nP~~~~~e~~~~l~~~GvNRiSlGVQsf 158 (416)
T COG0635 122 PDAEITIEA--NPGTVEAEKFKALKEAGVNRISLGVQSF 158 (416)
T ss_pred CCceEEEEe--CCCCCCHHHHHHHHHcCCCEEEeccccC
Confidence 3466776 3467799999999999999999998774
No 186
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=86.59 E-value=2.8 Score=36.44 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=58.5
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
..+|.+.|+.-.+.|+++.+||-..++. ... ..-.+.+++|.+.. .+.+.+..|.-+.+.++.+.++|++.+-=
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~dl~~~~-~~~--~~n~~~~~~i~~~~---~~pv~~~ggi~~~~d~~~~~~~G~~~vil 102 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDIDASK-RGR--EPLFELISNLAEEC---FMPLTVGGGIRSLEDAKKLLSLGADKVSI 102 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCcc-cCC--CCCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3488889999999999999999998852 122 23357777787653 45678888999999999999999887655
Q ss_pred Ccc
Q 026651 213 NIE 215 (235)
Q Consensus 213 NLE 215 (235)
|-+
T Consensus 103 g~~ 105 (232)
T TIGR03572 103 NTA 105 (232)
T ss_pred Chh
Confidence 543
No 187
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=86.51 E-value=3.4 Score=36.54 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=60.8
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.....|.+.|+...+.|++...|+.-+++. .+-..-.+.|++|++.. .+.+.+.-|.-+.+.++++.++|.+.+
T Consensus 27 ~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~---~~~~~~~~~i~~i~~~~---~ipv~~~GGi~s~~~~~~~l~~Ga~~V 100 (253)
T PRK02083 27 RDAGDPVELAKRYNEEGADELVFLDITASS---EGRDTMLDVVERVAEQV---FIPLTVGGGIRSVEDARRLLRAGADKV 100 (253)
T ss_pred eecCCHHHHHHHHHHcCCCEEEEEeCCccc---ccCcchHHHHHHHHHhC---CCCEEeeCCCCCHHHHHHHHHcCCCEE
Confidence 444578888999999999988888887642 12245677888887753 467888899999999999999999887
Q ss_pred ccCcc
Q 026651 211 AHNIE 215 (235)
Q Consensus 211 nHNLE 215 (235)
.=+-+
T Consensus 101 iigt~ 105 (253)
T PRK02083 101 SINSA 105 (253)
T ss_pred EEChh
Confidence 65543
No 188
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=86.30 E-value=2.2 Score=38.86 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=52.5
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEee-cCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCC-CC-HHHHHHHHhc
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTSV-DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR-GD-LRAVETLVHS 205 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTSg-~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~-l~-~e~l~~L~eA 205 (235)
.|+.++|+.+.|.++.+.|+.-+=+=.. +.|.-+-.+.+.+++++++||+..|++-|.+-+..+. .+ ++.++.|..-
T Consensus 21 lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~ 100 (272)
T PF05853_consen 21 LPITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAW 100 (272)
T ss_dssp S--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999872222111 1112233478999999999999989887776655432 23 4455555443
Q ss_pred CCCeeccCccc
Q 026651 206 GLDVFAHNIET 216 (235)
Q Consensus 206 G~d~ynHNLET 216 (235)
.||...=|+=|
T Consensus 101 ~pd~asl~~gs 111 (272)
T PF05853_consen 101 KPDMASLNPGS 111 (272)
T ss_dssp --SEEEEE-S-
T ss_pred CCCeEEecccc
Confidence 66665554433
No 189
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=86.27 E-value=3.3 Score=37.16 Aligned_cols=68 Identities=21% Similarity=0.185 Sum_probs=54.8
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCC-CCHHHHHHHHhcCCC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR-GDLRAVETLVHSGLD 208 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~-l~~e~l~~L~eAG~d 208 (235)
..++||.+..|++..+-|++-.=||=..- ...+.|++|+++.| ++++--|. ++.+|++.+.+||.+
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp---------~a~e~I~~l~~~~p----~~lIGAGTVL~~~q~~~a~~aGa~ 87 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTP---------AALEAIRALAKEFP----EALIGAGTVLNPEQARQAIAAGAQ 87 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCC---------CHHHHHHHHHHhCc----ccEEccccccCHHHHHHHHHcCCC
Confidence 47889999999999999999777765421 45789999999998 45555554 689999999999987
Q ss_pred ee
Q 026651 209 VF 210 (235)
Q Consensus 209 ~y 210 (235)
-+
T Consensus 88 fi 89 (211)
T COG0800 88 FI 89 (211)
T ss_pred EE
Confidence 54
No 190
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=86.22 E-value=0.72 Score=43.89 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=63.2
Q ss_pred eeeeeecC--CCCCCCCCCcccCCCC-C-CC---C-------CCchhHHHHHHHHH--HcCCcEEEEEeecCCCCCCCch
Q 026651 103 TATIMLLG--DTCTRGCRFCAVKTSR-N-PA---P-------PDPMEPENTAKAIA--SWGVDYIVLTSVDRDDIPDGGS 166 (235)
Q Consensus 103 taT~mIlG--~~CtedC~FCAQSt~~-~-p~---~-------ld~eE~~~~A~aa~--~~Gl~y~VVTSg~RddL~D~ga 166 (235)
+-.+++.. +.|+-||+||+|+.+. . |+ + ...+++.+--.... ..++-+..|+=.+- ++
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~~--~~---- 102 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPRA--LN---- 102 (339)
T ss_pred ceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeeccccc--cc----
Confidence 44455556 9999999999999422 1 21 1 22233333222211 11122566666654 33
Q ss_pred HHHHHHHHHHH-hhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcccc-ccccccc
Q 026651 167 GHFARTVKAMK-KQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETV-KRLQRIV 224 (235)
Q Consensus 167 ~~~a~~Ir~Ik-~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs-~rlfp~V 224 (235)
....+++.++ ...-.++|--|+-+=-+ .+.+..-+..|.|++.-=++.+ +..|.+|
T Consensus 103 -d~~~i~~~~~~~~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v 160 (339)
T COG2516 103 -DLKLILERLHIRLGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKV 160 (339)
T ss_pred -hhhhhhhhhhhccCCceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHH
Confidence 3456666666 32222222222322222 7888899999999887777765 5678888
No 191
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=86.21 E-value=0.32 Score=46.32 Aligned_cols=103 Identities=18% Similarity=0.282 Sum_probs=66.9
Q ss_pred cCCCCCCCCCCcccC-CCCCC-CCCCchhHHHHHHHHHHcC-CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC---CC
Q 026651 109 LGDTCTRGCRFCAVK-TSRNP-APPDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PD 182 (235)
Q Consensus 109 lG~~CtedC~FCAQS-t~~~p-~~ld~eE~~~~A~aa~~~G-l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~---p~ 182 (235)
|.+.|--||+||--. ....| ..+.++|++.+--.-.+.. +.=-.+.||--- -+|.-.+++.++.+.+|-+. .-
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~-~~DyTmE~mi~var~LRle~~f~GY 138 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIK-NPDYTMEEMIEVARILRLEHKFRGY 138 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecccccc-CcchHHHHHHHHHHHHhhccccCcE
Confidence 499999999999874 23334 4689999988754444332 222344555322 36788999999999998543 11
Q ss_pred ceEEEeecCCCCCHHHHHHHHhcCC--CeeccCccccc
Q 026651 183 IMVECLTSDFRGDLRAVETLVHSGL--DVFAHNIETVK 218 (235)
Q Consensus 183 ~~ievl~sdg~l~~e~l~~L~eAG~--d~ynHNLETs~ 218 (235)
+.+.+. | ...-+.+++||+ ||+.-|||+..
T Consensus 139 IHlK~I-P-----gas~~li~eaglyadRvSiNIElp~ 170 (404)
T COG4277 139 IHLKII-P-----GASPDLIKEAGLYADRVSINIELPT 170 (404)
T ss_pred EEEEec-C-----CCCHHHHHHHhhhhheeEEeEecCC
Confidence 334433 1 233445667775 99999999865
No 192
>PLN02334 ribulose-phosphate 3-epimerase
Probab=86.21 E-value=6.4 Score=34.41 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHHcC-CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 131 PDPMEPENTAKAIASWG-VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~G-l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
+.+..+.+.+++..+.| ++|+++-++....-...-.....+.++++++..++. .+.+ +|-.+.+.+..|+++|++.
T Consensus 122 ~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~--~I~a-~GGI~~e~i~~l~~aGad~ 198 (229)
T PLN02334 122 LNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPEL--DIEV-DGGVGPSTIDKAAEAGANV 198 (229)
T ss_pred ECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCC--cEEE-eCCCCHHHHHHHHHcCCCE
Confidence 34444556666666764 999877666532111111234455667777665543 3333 5566999999999999997
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 199 v 199 (229)
T PLN02334 199 I 199 (229)
T ss_pred E
Confidence 6
No 193
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=85.93 E-value=2.3 Score=40.32 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=41.9
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHcC--CcEEEEEeecCCCCCCCchHHHHHHHHHHHh
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWG--VDYIVLTSVDRDDIPDGGSGHFARTVKAMKK 178 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~G--l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~ 178 (235)
.|+-+|.||+.........+..+|+++....+...| ++.+++|. .+.-|-. . .+.+.|+.|++
T Consensus 109 GC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmG-mGEPLln--~-~v~~~i~~l~~ 173 (347)
T PRK14453 109 GCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMG-MGEALAN--P-ELFDALKILTD 173 (347)
T ss_pred CcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEee-cCCccCC--H-HHHHHHHHHhc
Confidence 599999999966322234689999999887776665 56666655 3322333 2 36777777765
No 194
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=85.92 E-value=3.8 Score=38.10 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh-cCCCee
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SGLDVF 210 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e-AG~d~y 210 (235)
++..+.|+.+.+.|++...|++.+++....+.++ -+.|++|++.. ++-|.+.-|..+.+.++++.+ .|+|-+
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~--~~~i~~ik~~~---~iPVI~nGgI~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAE--YDSIRAVKQKV---SIPVIANGDITDPLKARAVLDYTGADAL 221 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCCCcC--hHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence 4678999999999999999988876544333232 36778887743 577899999999999988886 577643
No 195
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=85.81 E-value=4.4 Score=34.68 Aligned_cols=64 Identities=20% Similarity=0.357 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
.+.|+.+.+.|++.+.+--. ..+.+.++++.+++..|.+.|| +| |-++.+.+..+++.|+|+|.
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~--------~~~~~~~~v~~l~~~~~~v~ie--~S-GGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNM--------SPEDLKEAVEELRELNPRVKIE--AS-GGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES---------CHHHHHHHHHHHHHHTTTSEEE--EE-SSSSTTTHHHHHHTT-SEEE
T ss_pred HHHHHHHHHhCCCEEEecCc--------CHHHHHHHHHHHhhcCCcEEEE--EE-CCCCHHHHHHHHhcCCCEEE
Confidence 34567777889888776333 2478888888888888876555 44 44589999999999999873
No 196
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=85.79 E-value=3.5 Score=37.25 Aligned_cols=73 Identities=22% Similarity=0.208 Sum_probs=54.8
Q ss_pred CCchhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 131 PDPMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
-+...+.+.|++.++.|+. .+|+|-.+. -.++ .+.++++|+.. .+=++..||..++.|++...++|.|.
T Consensus 67 ~~~~~~~~~A~~~~~~GA~aisvlte~~~---f~g~----~~~l~~v~~~v---~iPvl~kdfi~~~~qi~~a~~~GAD~ 136 (260)
T PRK00278 67 REDFDPVEIAKAYEAGGAACLSVLTDERF---FQGS----LEYLRAARAAV---SLPVLRKDFIIDPYQIYEARAAGADA 136 (260)
T ss_pred CCCCCHHHHHHHHHhCCCeEEEEeccccc---CCCC----HHHHHHHHHhc---CCCEEeeeecCCHHHHHHHHHcCCCE
Confidence 3456788999999999997 788887764 1233 45555666532 34567799999999999999999998
Q ss_pred eccC
Q 026651 210 FAHN 213 (235)
Q Consensus 210 ynHN 213 (235)
++=.
T Consensus 137 VlLi 140 (260)
T PRK00278 137 ILLI 140 (260)
T ss_pred EEEE
Confidence 7643
No 197
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.76 E-value=8.8 Score=29.71 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCC-CceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
+..+++.+.+.+.+++++... ..+..+.+.++.+|+..| ++.|-+--..+.. .-+.+++.|+|.|-|+
T Consensus 41 ~l~~~~~~~~pdvV~iS~~~~-----~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~---~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 41 EIVEAAKEEDADAIGLSGLLT-----THMTLMKEVIEELKEAGLDDIPVLVGGAIVTR---DFKFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHHHcCCCEEEEecccc-----ccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh---hHHHHHHcCCeEEECC
Confidence 444567777778777765532 346788888999998877 6655555444332 2257899999998775
No 198
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=85.69 E-value=5.3 Score=35.10 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=53.7
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 139 ~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
.|..+.+.|+.|+-.--+|-+|.-..+++.+.++++.+++.. ...+++++-++ +..++-.+..+|.+.+-
T Consensus 114 Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~--~~tkil~As~r-~~~ei~~a~~~Gad~vT 183 (211)
T cd00956 114 QALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYG--FDTKILAASIR-NPQHVIEAALAGADAIT 183 (211)
T ss_pred HHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcC--CCceEEecccC-CHHHHHHHHHcCCCEEE
Confidence 455667779999666777766777778888889888887753 34688887666 78888889999999874
No 199
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=85.47 E-value=4.1 Score=35.59 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhc-CCCe
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-GLDV 209 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA-G~d~ 209 (235)
..+..+.++.+.++|+++++||...++. ...+. ..+.++++++.. .+-+.++.|..+.+.+..+++. |++.
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g-~~~g~--~~~~i~~i~~~~---~~pvia~GGi~~~~di~~~l~~~g~dg 219 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDG-TKKGY--DLELIRAVSSAV---NIPVIASGGAGKPEHFVEAFEEGGADA 219 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCC-CCCCC--CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHhCCCCE
Confidence 5667788999999999999998876532 22222 356677777643 4678999999999999998886 8864
No 200
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=85.39 E-value=7.7 Score=34.63 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=47.3
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCC-chHHHHHHHHHHHhh----CCCceEEEeecCCCCCHHHHHHHHh
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-GSGHFARTVKAMKKQ----KPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~-ga~~~a~~Ir~Ik~~----~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
-+.|+.+.+..+..-. -+++++|.||.=+ ...+ =.....+-|+++|+. .+++.||+ ||-.+.+.+..+++
T Consensus 116 alnP~T~~~~i~~~l~-~vD~VlvMtV~PG-f~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeV---DGGI~~eti~~l~~ 190 (223)
T PRK08745 116 VLNPATPVDILDWVLP-ELDLVLVMSVNPG-FGGQAFIPSALDKLRAIRKKIDALGKPIRLEI---DGGVKADNIGAIAA 190 (223)
T ss_pred EeCCCCCHHHHHHHHh-hcCEEEEEEECCC-CCCccccHHHHHHHHHHHHHHHhcCCCeeEEE---ECCCCHHHHHHHHH
Confidence 3667667666655544 3789999999532 1111 122333445555543 23333443 68889999999999
Q ss_pred cCCCee
Q 026651 205 SGLDVF 210 (235)
Q Consensus 205 AG~d~y 210 (235)
||+|++
T Consensus 191 aGaDi~ 196 (223)
T PRK08745 191 AGADTF 196 (223)
T ss_pred cCCCEE
Confidence 999976
No 201
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=85.39 E-value=3.2 Score=41.68 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh-cCCC
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SGLD 208 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e-AG~d 208 (235)
-.+.+.|+.++++|+...++||.+||.... |++ .+.++.|++. +++-+.+|-|.++.+.+..|.. .|++
T Consensus 438 ~~~~~~~~~~~~~Gageil~t~id~DGt~~-G~d--~~l~~~v~~~---~~ipviasGG~g~~~d~~~~~~~~~~~ 507 (538)
T PLN02617 438 IGAYELAKAVEELGAGEILLNCIDCDGQGK-GFD--IELVKLVSDA---VTIPVIASSGAGTPEHFSDVFSKTNAS 507 (538)
T ss_pred CCHHHHHHHHHhcCCCEEEEeecccccccc-CcC--HHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHhcCCcc
Confidence 355778899999999999999999975432 222 4555666653 3688999999999999988876 5543
No 202
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=85.01 E-value=4.8 Score=35.68 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh---cCCCe
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH---SGLDV 209 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e---AG~d~ 209 (235)
...+.+.++...+.|+...++|+.+++... .|.+ .+.++++++.. .+.++++-|..+.+.+.++.+ .|++-
T Consensus 145 ~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~-~G~d--~~~i~~i~~~~---~ipviasGGi~s~~D~~~l~~~~~~Gvdg 218 (241)
T PRK14024 145 GGDLWEVLERLDSAGCSRYVVTDVTKDGTL-TGPN--LELLREVCART---DAPVVASGGVSSLDDLRALAELVPLGVEG 218 (241)
T ss_pred CccHHHHHHHHHhcCCCEEEEEeecCCCCc-cCCC--HHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHhhhccCCccE
Confidence 456788899999999999999999997543 3332 56666776643 578999999999999998864 47764
No 203
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=84.80 E-value=11 Score=36.33 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc----C-----------Cc-EEEEEeecCCCCCCCchHHHHHHHHH
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW----G-----------VD-YIVLTSVDRDDIPDGGSGHFARTVKA 175 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~----G-----------l~-y~VVTSg~RddL~D~ga~~~a~~Ir~ 175 (235)
.|+-+|+|||--+..-..-|...|++.+...+.+. | -+ .-||-.|-+.-|. -.+.+.++|+.
T Consensus 116 GC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~--NydnV~~ai~i 193 (371)
T PRK14461 116 GCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFA--NYDRWWQAVER 193 (371)
T ss_pred CccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchh--hHHHHHHHHHH
Confidence 79999999985532223358999999887666432 1 11 3556666663232 35666776666
Q ss_pred HHhhCC-Cc---eEEEeecCCCCCHHHHHHHHhcCC
Q 026651 176 MKKQKP-DI---MVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 176 Ik~~~p-~~---~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
|..... ++ .|-|-++ |-...+++|.+-++
T Consensus 194 l~d~~g~~is~R~ITVST~---Givp~I~~la~~~~ 226 (371)
T PRK14461 194 LHDPQGFNLGARSMTVSTV---GLVKGIRRLANERL 226 (371)
T ss_pred hcCccccCcCCCceEEEee---cchhHHHHHHhccc
Confidence 644210 11 1222222 23567778877664
No 204
>PRK14057 epimerase; Provisional
Probab=84.78 E-value=5.4 Score=36.59 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=45.8
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchH---HHHHHHHHHHhh----CCCceEEEeecCCCCCHHHHHHHH
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSG---HFARTVKAMKKQ----KPDIMVECLTSDFRGDLRAVETLV 203 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~---~~a~~Ir~Ik~~----~p~~~ievl~sdg~l~~e~l~~L~ 203 (235)
+.|..|.+..+..-.. +++++|.||.=+ . +|-. ...+-|+++|+. ..++.||+ ||-.+.+.+..|+
T Consensus 139 lnP~Tp~e~i~~~l~~-vD~VLvMtV~PG-f--gGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeV---DGGI~~~ti~~l~ 211 (254)
T PRK14057 139 LCPATPLDVIIPILSD-VEVIQLLAVNPG-Y--GSKMRSSDLHERVAQLLCLLGDKREGKIIVI---DGSLTQDQLPSLI 211 (254)
T ss_pred ECCCCCHHHHHHHHHh-CCEEEEEEECCC-C--CchhccHHHHHHHHHHHHHHHhcCCCceEEE---ECCCCHHHHHHHH
Confidence 6666666666655553 789999999532 1 2222 223334443332 22344443 6888999999999
Q ss_pred hcCCCee
Q 026651 204 HSGLDVF 210 (235)
Q Consensus 204 eAG~d~y 210 (235)
+||+|.|
T Consensus 212 ~aGad~~ 218 (254)
T PRK14057 212 AQGIDRV 218 (254)
T ss_pred HCCCCEE
Confidence 9999976
No 205
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=84.77 E-value=6.9 Score=35.30 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=50.2
Q ss_pred CCCCCchhHHHHHHHH-HHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCCceE-EEeecCCCCCHHHHHHHH
Q 026651 128 PAPPDPMEPENTAKAI-ASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV-ECLTSDFRGDLRAVETLV 203 (235)
Q Consensus 128 p~~ld~eE~~~~A~aa-~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~i-evl~sdg~l~~e~l~~L~ 203 (235)
+.++|.+|+...|..| +-+|.+.+.+ +|+.+ +..+ .+.|+++++.. .+ -+.+..|.-+.|+++++.
T Consensus 134 ~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g-~~~~------~e~I~~v~~~~---~~~pvivGGGIrs~e~a~~~l 203 (232)
T PRK04169 134 PIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAG-DPVP------PEMVKAVKKAL---DITPLIYGGGIRSPEQARELM 203 (232)
T ss_pred cCCCChHHHHHHHHHHHHHcCCCeEEEECCCCCC-CCCC------HHHHHHHHHhc---CCCcEEEECCCCCHHHHHHHH
Confidence 6678888887765555 5667775444 34433 2233 56666777643 23 667888999999999999
Q ss_pred hcCCCee
Q 026651 204 HSGLDVF 210 (235)
Q Consensus 204 eAG~d~y 210 (235)
++|.|.+
T Consensus 204 ~~GAD~V 210 (232)
T PRK04169 204 AAGADTI 210 (232)
T ss_pred HhCCCEE
Confidence 9999875
No 206
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.77 E-value=5.1 Score=39.88 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+..++..+.|++..+.|+++++|++-. +-.....+.|+.||+..|. .+.+.+ --.++.++++.|.+||+|.+
T Consensus 238 v~~~~~~~ra~~Lv~aGvd~i~vd~a~------g~~~~~~~~i~~ir~~~~~-~~~V~a-GnV~t~e~a~~li~aGAd~I 309 (502)
T PRK07107 238 INTRDYAERVPALVEAGADVLCIDSSE------GYSEWQKRTLDWIREKYGD-SVKVGA-GNVVDREGFRYLAEAGADFV 309 (502)
T ss_pred cChhhHHHHHHHHHHhCCCeEeecCcc------cccHHHHHHHHHHHHhCCC-CceEEe-ccccCHHHHHHHHHcCCCEE
Confidence 444567788889999999999987332 2345678999999998873 122222 11347999999999999986
No 207
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=84.52 E-value=4.2 Score=36.21 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=55.3
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC-CCe
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDV 209 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG-~d~ 209 (235)
..++...++...+.|++..++|+..++.- .+|++ .+.++++++.. .+-+.++-|..+.+.+.++.+.| ++-
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~-~~g~~--~~~~~~i~~~~---~ipvia~GGi~s~~di~~~~~~g~~dg 225 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGT-KSGYD--LELTKAVSEAV---KIPVIASGGAGKPEHFYEAFTKGKADA 225 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccC-CCCCC--HHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCcce
Confidence 56778889999999999999999887532 23332 45677777653 47789999999999999999988 776
No 208
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=84.49 E-value=2.8 Score=37.40 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHHHcCCc-EEEE-EeecCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEeecCCCCCHHHHHHHHhcC
Q 026651 131 PDPMEPENTAKAIASWGVD-YIVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~-y~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~--~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
.++++..+.++.+.++|++ +++. |.|.- .| ..+.+.++.||+..+. +.++.---.|+.-.-.+..+ ++|
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~--~P----~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi-~aG 210 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTDSAGAM--LP----DDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAV-EAG 210 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCc--CH----HHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHH-HhC
Confidence 5678899999999999987 4444 66643 23 4778888888877654 34444445555555555554 688
Q ss_pred CCeecc
Q 026651 207 LDVFAH 212 (235)
Q Consensus 207 ~d~ynH 212 (235)
+++++=
T Consensus 211 a~~vd~ 216 (263)
T cd07943 211 ATRIDG 216 (263)
T ss_pred CCEEEe
Confidence 887753
No 209
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=84.48 E-value=6.8 Score=33.21 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.-.++|+.+.| .+..++ +|+-|. +..+-...+.+.++++|+...+- |.+ .--|.+..+.++.|++.|+++
T Consensus 49 ~~tp~e~v~aA---~~~dv~-vIgvSs----l~g~h~~l~~~lve~lre~G~~~-i~v-~~GGvip~~d~~~l~~~G~~~ 118 (143)
T COG2185 49 FQTPEEAVRAA---VEEDVD-VIGVSS----LDGGHLTLVPGLVEALREAGVED-ILV-VVGGVIPPGDYQELKEMGVDR 118 (143)
T ss_pred cCCHHHHHHHH---HhcCCC-EEEEEe----ccchHHHHHHHHHHHHHHhCCcc-eEE-eecCccCchhHHHHHHhCcce
Confidence 34556666544 444454 444444 33455778899999999876542 333 346777889999999999998
Q ss_pred ec
Q 026651 210 FA 211 (235)
Q Consensus 210 yn 211 (235)
|=
T Consensus 119 if 120 (143)
T COG2185 119 IF 120 (143)
T ss_pred ee
Confidence 73
No 210
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=84.40 E-value=4.3 Score=36.41 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
.+|.+.|+.-.+.|++..+||-.+++. . +-..-.+.|++|.+.. .+.+.+..|.-+.++++++.++|++.+-=|
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~-~--~~~~n~~~i~~i~~~~---~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASK-R--GSEPNYELIENLASEC---FMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCc-C--CCcccHHHHHHHHHhC---CCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 378889999999999999999888752 1 2234467777777642 466788889999999999999999998767
Q ss_pred cccc
Q 026651 214 IETV 217 (235)
Q Consensus 214 LETs 217 (235)
-++.
T Consensus 104 s~~~ 107 (258)
T PRK01033 104 TAAL 107 (258)
T ss_pred hHHh
Confidence 5543
No 211
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=84.32 E-value=4.9 Score=35.92 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=54.9
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCC---CCC---------CCc---h---HHHHHHHHHHHhhCCCceEEEeecC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD---DIP---------DGG---S---GHFARTVKAMKKQKPDIMVECLTSD 191 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd---dL~---------D~g---a---~~~a~~Ir~Ik~~~p~~~ievl~sd 191 (235)
..+.++..+.|+.+.+.|+++++++..... +.. .++ . ..-.+.|++|++..| ..+-+++.-
T Consensus 172 ~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~-~~ipiia~G 250 (289)
T cd02810 172 YFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ-LDIPIIGVG 250 (289)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC-CCCCEEEEC
Confidence 466779999999999999998887643221 110 011 1 112456777777553 146788999
Q ss_pred CCCCHHHHHHHHhcCCCee
Q 026651 192 FRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 192 g~l~~e~l~~L~eAG~d~y 210 (235)
|.-+.+.+.++.++|.+.+
T Consensus 251 GI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 251 GIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred CCCCHHHHHHHHHcCccHh
Confidence 9999999999999997643
No 212
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=84.29 E-value=10 Score=33.79 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=57.4
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEe--------ecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHH
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTS--------VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVE 200 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTS--------g~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~ 200 (235)
..++.++..+.|+...++|++++=++. .+.. .+. +. =.+.++.+++..+++.+-++..-+..+.+.++
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~-~~~--~~-~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYG-FAA--HT-DEEYLEAAAEALKQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccC-CCC--CC-hHHHHHHHHHhccCCEEEEEecCCccCHHHHH
Confidence 368899999999999999999877762 2211 111 11 13466777666677777777666677889999
Q ss_pred HHHhcCCCeec
Q 026651 201 TLVHSGLDVFA 211 (235)
Q Consensus 201 ~L~eAG~d~yn 211 (235)
..+++|++.++
T Consensus 93 ~a~~~g~~~ir 103 (263)
T cd07943 93 MAADLGVDVVR 103 (263)
T ss_pred HHHHcCCCEEE
Confidence 99999999875
No 213
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.19 E-value=8.8 Score=34.39 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=52.8
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
..|+++..+++++..+.|++..=||--. +...+.|.+..+.++++.|++.|+.= -.++.++++..+++|.+-
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~t-----p~a~~~i~~l~~~~~~~~p~~~vGaG---TVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRG-----DFAHEVFAELVKYAAKELPGMILGVG---SIVDAATAALYIQLGANF 94 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC-----CcHHHHHHHHHHHHHhhCCCeEEeeE---eCcCHHHHHHHHHcCCCE
Confidence 3688999999999999999987777643 22344454444555566786655433 246899999999999975
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 95 i 95 (222)
T PRK07114 95 I 95 (222)
T ss_pred E
Confidence 4
No 214
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.15 E-value=3.9 Score=38.34 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=52.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
-++.+|.+++++.+.+.|++|+-|+.+.........-......++.|++... ..+=|.+..++-+.+.++++++.|.|.
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t~e~ae~~l~~gaD~ 309 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIA-GRLPLIAVGSINTPDDALEALETGADL 309 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhC-CCCCEEEECCCCCHHHHHHHHHcCCCh
Confidence 3567899999999999999998888775432211110112333445555321 134467777777899999988888775
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 310 V 310 (353)
T cd04735 310 V 310 (353)
T ss_pred H
Confidence 4
No 215
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=84.04 E-value=4.1 Score=36.62 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchH---HHHHHHHHHHhhCC--CceEEEeecCCCCCHHHHHHHHhc
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSG---HFARTVKAMKKQKP--DIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~---~~a~~Ir~Ik~~~p--~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
+.|+.+.+..+..-. -+++++|.||.=+ -+|-. ...+-|+++|+..+ +.++.+.+ ||-.+.+.+..|++|
T Consensus 115 lnP~T~~~~l~~~l~-~vD~VLvMsV~PG---f~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeV-DGGI~~~~i~~~~~a 189 (229)
T PRK09722 115 LNPETPVESIKYYIH-LLDKITVMTVDPG---FAGQPFIPEMLDKIAELKALRERNGLEYLIEV-DGSCNQKTYEKLMEA 189 (229)
T ss_pred eCCCCCHHHHHHHHH-hcCEEEEEEEcCC---CcchhccHHHHHHHHHHHHHHHhcCCCeEEEE-ECCCCHHHHHHHHHc
Confidence 566666655554444 2789999999522 12222 23334444443322 12233333 677899999999999
Q ss_pred CCCee
Q 026651 206 GLDVF 210 (235)
Q Consensus 206 G~d~y 210 (235)
|+|++
T Consensus 190 Gad~~ 194 (229)
T PRK09722 190 GADVF 194 (229)
T ss_pred CCCEE
Confidence 99976
No 216
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=83.75 E-value=4.6 Score=34.89 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
..|.+.|+.-.+.|++...|..-++ .. .+-..-.+.|++|++.. .+.+.+..|.-+.++++.+.++|++.+-
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~--~~-~g~~~~~~~i~~i~~~~---~~pi~~ggGI~~~ed~~~~~~~Ga~~vv 99 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDG--AK-EGGPVNLPVIKKIVRET---GVPVQVGGGIRSLEDVEKLLDLGVDRVI 99 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCc--cc-cCCCCcHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 4788899999999998544422111 11 12223456777777653 4567788999999999999999998664
No 217
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=83.66 E-value=3.6 Score=39.38 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
-.+.+++..+.|+++.+|=+- .+-.+++.+.|+.||+..|++ .+.+- ...+.|+++.|.++|+|.+-
T Consensus 109 ~~er~~~L~~agvD~ivID~a------~g~s~~~~~~ik~ik~~~~~~--~viaG-NV~T~e~a~~L~~aGad~vk 175 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSA------HGHSEHVIDMIKKIKKKFPDV--PVIAG-NVVTYEGAKDLIDAGADAVK 175 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-S------STTSHHHHHHHHHHHHHSTTS--EEEEE-EE-SHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHcCCCEEEcccc------CccHHHHHHHHHHHHHhCCCc--eEEec-ccCCHHHHHHHHHcCCCEEE
Confidence 356677777889998877443 344689999999999999954 33432 24589999999999999763
No 218
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=83.62 E-value=4.6 Score=34.97 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=50.4
Q ss_pred CCCchhHHHHHHHHHHcCCc-EEEE-EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecC--CCCCHHHHHHHHhc
Q 026651 130 PPDPMEPENTAKAIASWGVD-YIVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD--FRGDLRAVETLVHS 205 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~-y~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sd--g~l~~e~l~~L~eA 205 (235)
..++++..+.++.+.++|++ .++. |.|.- .| ..+.+.|+.|++..|++.|++-.-+ |+.....+ .-.+|
T Consensus 133 ~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~--~P----~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~l-aA~~a 205 (237)
T PF00682_consen 133 RTDPEELLELAEALAEAGADIIYLADTVGIM--TP----EDVAELVRALREALPDIPLGFHAHNDLGLAVANAL-AALEA 205 (237)
T ss_dssp GSSHHHHHHHHHHHHHHT-SEEEEEETTS-S---H----HHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHH-HHHHT
T ss_pred cccHHHHHHHHHHHHHcCCeEEEeeCccCCc--CH----HHHHHHHHHHHHhccCCeEEEEecCCccchhHHHH-HHHHc
Confidence 36789999999999999998 4555 77754 33 4788999999998887666665544 44333333 44569
Q ss_pred CCCeec
Q 026651 206 GLDVFA 211 (235)
Q Consensus 206 G~d~yn 211 (235)
|+++++
T Consensus 206 Ga~~id 211 (237)
T PF00682_consen 206 GADRID 211 (237)
T ss_dssp T-SEEE
T ss_pred CCCEEE
Confidence 999864
No 219
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=83.59 E-value=3.9 Score=38.83 Aligned_cols=88 Identities=11% Similarity=0.139 Sum_probs=54.7
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHc-CCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhC-CC---ceE
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASW-GVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PD---IMV 185 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~-Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~-p~---~~i 185 (235)
.|+-+|.||+........-+...|+...+..+.+. |-+ .-||-.|-+.-| -..+.+.++++.|+... .+ -.|
T Consensus 114 GC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL--~N~d~V~~~~~~l~~~~~~~~~~r~i 191 (342)
T PRK14465 114 GCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPM--HNYFNVIRAASILHDPDAFNLGAKRI 191 (342)
T ss_pred CCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcch--hhHHHHHHHHHHHhChhhhcCCCCeE
Confidence 79999999997653333467889999888777653 322 355556655323 33678888888887641 11 133
Q ss_pred EEeecCCCCCHHHHHHHHh
Q 026651 186 ECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 186 evl~sdg~l~~e~l~~L~e 204 (235)
-+ ...|.+ ..+.+|.+
T Consensus 192 tv-ST~G~~--~~i~~l~~ 207 (342)
T PRK14465 192 TI-STSGVV--NGIRRFIE 207 (342)
T ss_pred EE-eCCCch--HHHHHHHh
Confidence 33 334554 66777765
No 220
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=83.29 E-value=4.4 Score=35.77 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
...+.+.++...++ ++..++|...++.- ..| .-.+.++.|.+. +.+.+.++-|..+.+.+++|+++|++..
T Consensus 145 ~~~~~~~~~~~~~~-~~~li~~di~~~G~-~~g--~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~v 215 (233)
T cd04723 145 FIGPEELLRRLAKW-PEELIVLDIDRVGS-GQG--PDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGA 215 (233)
T ss_pred cCCHHHHHHHHHHh-CCeEEEEEcCcccc-CCC--cCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 44577888899999 99999999988632 222 224556666654 2578899999999999999999998764
No 221
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=82.99 E-value=5.4 Score=35.33 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCc
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNL 214 (235)
+|.+.|+.-.+.|++...|.--++. . +...-.++|++|.+.. .+.+.+.-|.-+.|+++++.++|.++..-|-
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~--~--g~~~n~~~i~~i~~~~---~~pv~vgGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA--F--GRGSNRELLAEVVGKL---DVKVELSGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc--C--CCCccHHHHHHHHHHc---CCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 7888999999999986555444432 1 2333458888887753 4667788899999999999999999987776
Q ss_pred cccc
Q 026651 215 ETVK 218 (235)
Q Consensus 215 ETs~ 218 (235)
++..
T Consensus 106 ~~l~ 109 (241)
T PRK14024 106 AALE 109 (241)
T ss_pred hHhC
Confidence 6543
No 222
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=82.92 E-value=4.9 Score=39.94 Aligned_cols=67 Identities=24% Similarity=0.347 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+..+.|++..+.|++.++|=+ .++....+.+.|+.||+..|+..| . --...+.+.++.+.++|+|.+
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~------~~g~~~~~~~~i~~ik~~~p~~~v--i-~g~v~t~e~a~~a~~aGaD~i 314 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDS------SQGDSIYQLEMIKYIKKTYPELDV--I-GGNVVTMYQAQNLIQAGVDGL 314 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeC------CCCCcHHHHHHHHHHHHhCCCCcE--E-EecCCCHHHHHHHHHcCcCEE
Confidence 445677888888999888744 345566778999999998886432 2 123458999999999999987
No 223
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=82.83 E-value=4 Score=35.25 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=44.8
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 140 A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
|+++.++|++|+.++...+............+.+++|++.. .+-+++.-|..+.+.++++.++|.|-+
T Consensus 136 a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~~~~~~~~~l~~GadgV 203 (219)
T cd04729 136 ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRINSPEQAAKALELGADAV 203 (219)
T ss_pred HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHCCCCEE
Confidence 57788889999876543221111011112236777787653 467788888889999999999998754
No 224
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=82.79 E-value=8.3 Score=35.40 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHH-hcCCCe
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV-HSGLDV 209 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~-eAG~d~ 209 (235)
.+..+.|+.+++.|+++..|+...+.....+. ...+.+++|++.. .+-+.+.-|..+.+.++++. ..|+|.
T Consensus 147 ~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~--~~~~~i~~i~~~~---~ipvi~nGgI~~~~da~~~l~~~gad~ 218 (319)
T TIGR00737 147 INAVEAARIAEDAGAQAVTLHGRTRAQGYSGE--ANWDIIARVKQAV---RIPVIGNGDIFSPEDAKAMLETTGCDG 218 (319)
T ss_pred chHHHHHHHHHHhCCCEEEEEcccccccCCCc--hhHHHHHHHHHcC---CCcEEEeCCCCCHHHHHHHHHhhCCCE
Confidence 45778999999999998888765443222222 3457888888754 47788999999999998888 567764
No 225
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=82.69 E-value=4.5 Score=37.49 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=54.9
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCC-------CC--CCch----H--HHHHHHHHHHhhCCCceEEEeecCCCCC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD-------IP--DGGS----G--HFARTVKAMKKQKPDIMVECLTSDFRGD 195 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rdd-------L~--D~ga----~--~~a~~Ir~Ik~~~p~~~ievl~sdg~l~ 195 (235)
.+.+++.++|+++.+.|+++++++....+. +. -+++ . ...+.|+.+++..+ -.+-+.+.-|.-+
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~-~~ipIi~~GGI~t 291 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTG-GKIPIIGVGGISS 291 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhC-CCCcEEEECCCCC
Confidence 344689999999999999998877653311 00 0111 1 23567777877543 1367889999999
Q ss_pred HHHHHHHHhcCCCee
Q 026651 196 LRAVETLVHSGLDVF 210 (235)
Q Consensus 196 ~e~l~~L~eAG~d~y 210 (235)
.+++.++..+|.+.+
T Consensus 292 ~~da~e~l~aGAd~V 306 (327)
T cd04738 292 GEDAYEKIRAGASLV 306 (327)
T ss_pred HHHHHHHHHcCCCHH
Confidence 999999999998754
No 226
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.49 E-value=6.8 Score=38.77 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
++..+.+++..+.|++.++|=+-.+ -...+.+.|+.||+++|++ .+.+. -..+.|+++.|.+||+|.+-=-
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~------~~~~~~~~i~~ik~~~p~~--~v~ag-nv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHG------HQEKMLEALRAVRALDPGV--PIVAG-NVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCC------ccHHHHHHHHHHHHHCCCC--eEEee-ccCCHHHHHHHHHcCCCEEEEC
Confidence 4566778888889999877744333 2578999999999999964 44442 2347999999999999987644
Q ss_pred ccccccccccccCCCCcc
Q 026651 214 IETVKRLQRIVRDPRAGL 231 (235)
Q Consensus 214 LETs~rlfp~Vcdtth~Y 231 (235)
|=+ .+|| ||..|
T Consensus 297 ig~-----gsic-tt~~~ 308 (479)
T PRK07807 297 VGP-----GAMC-TTRMM 308 (479)
T ss_pred ccC-----Cccc-ccccc
Confidence 443 3566 55544
No 227
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=82.49 E-value=3.5 Score=38.02 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 133 PMEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.+.|.+.|+.-++.|++ |+|=--+ +...=.++|++|.+ .+ +.+-+.-|+= .|+++++.++|++++
T Consensus 42 ~~dP~~~A~~~~~~Ga~~lHvVDLdg--------g~~~n~~~i~~i~~-~~---~~vqvGGGIR-~e~i~~~l~~Ga~rV 108 (262)
T PLN02446 42 DKSAAEFAEMYKRDGLTGGHVIMLGA--------DDASLAAALEALRA-YP---GGLQVGGGVN-SENAMSYLDAGASHV 108 (262)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCC--------CCcccHHHHHHHHh-CC---CCEEEeCCcc-HHHHHHHHHcCCCEE
Confidence 46899999999999998 5543221 22222778888887 43 4555666775 599999999999998
Q ss_pred ccC
Q 026651 211 AHN 213 (235)
Q Consensus 211 nHN 213 (235)
-=|
T Consensus 109 iig 111 (262)
T PLN02446 109 IVT 111 (262)
T ss_pred EEc
Confidence 655
No 228
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=82.39 E-value=7.2 Score=35.18 Aligned_cols=73 Identities=18% Similarity=0.340 Sum_probs=48.7
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCc---hHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGG---SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~g---a~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
+.|..+++.+....+ -++.++|.+|.-. =|| .+..-.-|+.+|+++|+..||+ ||-+..+.+.+.++||.
T Consensus 119 lkPgT~Ve~~~~~~~-~~D~vLvMtVePG---FGGQkFme~mm~KV~~lR~kyp~l~iev---DGGv~~~ti~~~a~AGA 191 (224)
T KOG3111|consen 119 LKPGTPVEDLEPLAE-HVDMVLVMTVEPG---FGGQKFMEDMMPKVEWLREKYPNLDIEV---DGGVGPSTIDKAAEAGA 191 (224)
T ss_pred eCCCCcHHHHHHhhc-cccEEEEEEecCC---CchhhhHHHHHHHHHHHHHhCCCceEEe---cCCcCcchHHHHHHcCC
Confidence 445555544443333 3678888888521 122 2333455788888899998887 57778899999999998
Q ss_pred Cee
Q 026651 208 DVF 210 (235)
Q Consensus 208 d~y 210 (235)
+.+
T Consensus 192 N~i 194 (224)
T KOG3111|consen 192 NMI 194 (224)
T ss_pred CEE
Confidence 764
No 229
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=82.28 E-value=6.5 Score=36.02 Aligned_cols=61 Identities=8% Similarity=0.136 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhc
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
+.++...+. +...++|+++||..-. |.+ .+.++.+.+. +.+-+.+|-|.++.+.+.+|++.
T Consensus 162 e~~~~~~~~-~~~il~TdI~rDGtl~-G~d--lel~~~l~~~---~~ipVIASGGv~s~eDi~~l~~~ 222 (253)
T TIGR02129 162 ETLEELSKY-CDEFLIHAADVEGLCK-GID--EELVSKLGEW---SPIPITYAGGAKSIDDLDLVDEL 222 (253)
T ss_pred HHHHHHHhh-CCEEEEeeecccCccc-cCC--HHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHh
Confidence 777788888 9999999999986522 222 3455666554 35789999999999999999664
No 230
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=82.18 E-value=7.9 Score=36.26 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCC--CCC-------CCch------HHHHHHHHHHHhhCCCceEEEeecCCCCC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRD--DIP-------DGGS------GHFARTVKAMKKQKPDIMVECLTSDFRGD 195 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd--dL~-------D~ga------~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~ 195 (235)
.+.+++.++|+++.+.|++.++++....+ ++. .++. ....+.|+.+++..+. .+-+.+.-|.-+
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~-~ipIig~GGI~s 300 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGG-RLPIIGVGGIDS 300 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCC-CCCEEEECCCCC
Confidence 44458999999999999998777664321 110 0111 1234577778775421 367889999999
Q ss_pred HHHHHHHHhcCCCee
Q 026651 196 LRAVETLVHSGLDVF 210 (235)
Q Consensus 196 ~e~l~~L~eAG~d~y 210 (235)
.+++.+...+|.+.+
T Consensus 301 ~eda~e~l~aGAd~V 315 (344)
T PRK05286 301 AEDAYEKIRAGASLV 315 (344)
T ss_pred HHHHHHHHHcCCCHH
Confidence 999999888998754
No 231
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=82.14 E-value=7 Score=36.72 Aligned_cols=79 Identities=16% Similarity=0.094 Sum_probs=56.8
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCC-------CCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD-------DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL 202 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd-------dL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L 202 (235)
.++.++..++|++..+.|++++=|+-++.- ..+. ...+ +.++++.+..+.+.+-++.--|.++.+.++..
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~--~~~~-e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA--HTDL-EYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC--CChH-HHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 688999999999999999999888744320 0110 1111 34455555555677776665578899999999
Q ss_pred HhcCCCeec
Q 026651 203 VHSGLDVFA 211 (235)
Q Consensus 203 ~eAG~d~yn 211 (235)
.++|++.++
T Consensus 97 ~~~gvd~ir 105 (333)
T TIGR03217 97 YDAGARTVR 105 (333)
T ss_pred HHCCCCEEE
Confidence 999999865
No 232
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=82.01 E-value=7.2 Score=35.96 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=67.0
Q ss_pred CCCCCcccCC-CCCCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCC
Q 026651 115 RGCRFCAVKT-SRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR 193 (235)
Q Consensus 115 edC~FCAQSt-~~~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~ 193 (235)
++|.|+-..+ ++.++.+ .+++-|++++++|+.-.++||-++|....+ .+ .+.+++|++. ++|=|.+|-|-
T Consensus 138 ~~~~~~v~~~gGr~~t~~---d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G-yD--l~l~~~v~~~---v~iPvIASGGa 208 (256)
T COG0107 138 ENGWYEVFTHGGREDTGL---DAVEWAKEVEELGAGEILLTSMDRDGTKAG-YD--LELTRAVREA---VNIPVIASGGA 208 (256)
T ss_pred CCCcEEEEecCCCcCCCc---CHHHHHHHHHHcCCceEEEeeecccccccC-cC--HHHHHHHHHh---CCCCEEecCCC
Confidence 7888876664 3333333 467789999999999999999999865443 32 3455666664 46789999999
Q ss_pred CCHHHHHHHHhcC-------CCeeccCcccccc
Q 026651 194 GDLRAVETLVHSG-------LDVFAHNIETVKR 219 (235)
Q Consensus 194 l~~e~l~~L~eAG-------~d~ynHNLETs~r 219 (235)
|+.+.+-.....| ..+||-+.=|++.
T Consensus 209 G~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~e 241 (256)
T COG0107 209 GKPEHFVEAFTEGKADAALAASIFHFGEITIGE 241 (256)
T ss_pred CcHHHHHHHHHhcCccHHHhhhhhhcCcccHHH
Confidence 9999887766544 3456655544443
No 233
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=81.99 E-value=6.5 Score=34.67 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.+.+..+....+|+ ..++|+..+|.- ..|.+ .+.++++.+.. .+.+.++-|..+.+.+++|.++|++-
T Consensus 142 ~~~~~~~~~~~~g~-~ii~tdI~~dGt-~~G~d--~eli~~i~~~~---~~pvia~GGi~s~ed~~~l~~~Ga~~ 209 (221)
T TIGR00734 142 SLEEVRDFLNSFDY-GLIVLDIHSVGT-MKGPN--LELLTKTLELS---EHPVMLGGGISGVEDLELLKEMGVSA 209 (221)
T ss_pred cHHHHHHHHHhcCC-EEEEEECCcccc-CCCCC--HHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHCCCCE
Confidence 45556666677888 678899999743 22222 45556666542 46799999999999999999999874
No 234
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=81.86 E-value=6.1 Score=36.56 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=55.9
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCC--CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC-
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI--PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG- 206 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL--~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG- 206 (235)
-.+.+|..+.|+..++.|+.|+-|++|.+..- .........+.++.||+.. ++-|++..+..+.+.++.++++|
T Consensus 237 g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~G~i~t~~~a~~~l~~g~ 313 (336)
T cd02932 237 GWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA---GIPVIAVGLITDPEQAEAILESGR 313 (336)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 35688999999999999999888877654211 0111233456777888754 46677878888999999999988
Q ss_pred CCee
Q 026651 207 LDVF 210 (235)
Q Consensus 207 ~d~y 210 (235)
+|.+
T Consensus 314 aD~V 317 (336)
T cd02932 314 ADLV 317 (336)
T ss_pred CCee
Confidence 6653
No 235
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.75 E-value=16 Score=30.00 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhh-CCCceEEEeecCCCC---CHHHHHHHHhcCCCeecc
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ-KPDIMVECLTSDFRG---DLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~-~p~~~ievl~sdg~l---~~e~l~~L~eAG~d~ynH 212 (235)
++++++.+.+.+++.+++... .....+-+.++.+++. .+++.|-+--..+.. ..+..++|++.|++.+=.
T Consensus 45 ~i~~~a~~~~~d~V~lS~~~~-----~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 45 EFIDAAIETDADAILVSSLYG-----HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHHcCCCEEEEcCccc-----cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 445577888889888877654 3366788888999887 445555555444333 355668999999975433
No 236
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=81.60 E-value=7 Score=35.78 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=54.4
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCC-chHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhc-CCC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS-GLD 208 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~-ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA-G~d 208 (235)
...-++.+.++.-.+.|+.+.++|...||.+-.+ .+ +.++++.+. +.+-+.+|-|.-+.+.++.|++. |+.
T Consensus 144 ~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~----~l~~~l~~~---~~ipviaSGGv~s~~Di~~l~~~~G~~ 216 (241)
T COG0106 144 DSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNV----DLVKELAEA---VDIPVIASGGVSSLDDIKALKELSGVE 216 (241)
T ss_pred cccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCH----HHHHHHHHH---hCcCEEEecCcCCHHHHHHHHhcCCCc
Confidence 3444788889999999999999999999865322 33 344444443 25788999999999999999999 654
No 237
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=81.53 E-value=9.4 Score=32.30 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=49.5
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+++.++.+.++.+.+.|++|+-+..+........ ...+.++++++..+.. .+. .+|-.+.+.+..++++|++.+
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~---~~~~~i~~l~~~~~~~--~i~-v~GGI~~~n~~~~~~~Ga~~v 183 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHTGLDEQAKGQ---NPFEDLQTILKLVKEA--RVA-VAGGINLDTIPDVIKLGPDIV 183 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCC---CCHHHHHHHHHhcCCC--cEE-EECCcCHHHHHHHHHcCCCEE
Confidence 5778888888888889999887755432111110 1234566666666543 333 346669999999999999865
Q ss_pred c
Q 026651 211 A 211 (235)
Q Consensus 211 n 211 (235)
-
T Consensus 184 ~ 184 (206)
T TIGR03128 184 I 184 (206)
T ss_pred E
Confidence 4
No 238
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=81.53 E-value=6.9 Score=35.46 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEE---eecCCCCCC---------Cc------hHHHHHHHHHHHhhCCCceEEEeecCC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLT---SVDRDDIPD---------GG------SGHFARTVKAMKKQKPDIMVECLTSDF 192 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVT---Sg~RddL~D---------~g------a~~~a~~Ir~Ik~~~p~~~ievl~sdg 192 (235)
.+.++..+.|+.+++.|++.++++ .+...|+.. ++ .....+.+++|++.. .+-+.+.-|
T Consensus 166 ~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~---~ipvi~~GG 242 (301)
T PRK07259 166 PNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV---DIPIIGMGG 242 (301)
T ss_pred CCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC---CCCEEEECC
Confidence 355688899999999999976653 232212211 11 112456777777753 467888899
Q ss_pred CCCHHHHHHHHhcCCCee
Q 026651 193 RGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 193 ~l~~e~l~~L~eAG~d~y 210 (235)
.-+.+.+.++..+|.|.+
T Consensus 243 I~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 243 ISSAEDAIEFIMAGASAV 260 (301)
T ss_pred CCCHHHHHHHHHcCCCce
Confidence 999999999999998743
No 239
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=81.37 E-value=8.1 Score=37.89 Aligned_cols=68 Identities=25% Similarity=0.421 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+..+.+++..+.|++..+|.+-. +....+.+.++.||+..|++ .+.+ -+..+.++++.|.++|+|.+.
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~------g~~~~vl~~i~~i~~~~p~~--~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAH------GHSEGVLDRVREIKAKYPDV--QIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCC------CcchhHHHHHHHHHhhCCCC--CEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 45788999999999976654332 23467889999999988754 4344 455689999999999999984
No 240
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=81.04 E-value=12 Score=35.30 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=57.5
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCC-------CCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD-------DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL 202 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd-------dL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L 202 (235)
.++.++..++|++..+.|++++=|+-+++- ..+-. . =.+.++++++..+++.+-++.--|.++.+.++..
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~--~-~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 97 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAH--T-DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMA 97 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCC--C-HHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHH
Confidence 688999999999999999999888744320 01110 0 1346666666566778877665678889999999
Q ss_pred HhcCCCeec
Q 026651 203 VHSGLDVFA 211 (235)
Q Consensus 203 ~eAG~d~yn 211 (235)
.++|++.+.
T Consensus 98 ~~~gvd~ir 106 (337)
T PRK08195 98 YDAGVRVVR 106 (337)
T ss_pred HHcCCCEEE
Confidence 999999754
No 241
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=80.30 E-value=5.6 Score=34.34 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=44.0
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 140 A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
++.+.+.|++|++++++..............+.+++|++.. .+-+++..|.-+.+.++++.++|.+-+
T Consensus 132 ~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~iPvia~GGI~t~~~~~~~l~~GadgV 199 (221)
T PRK01130 132 GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---GCPVIAEGRINTPEQAKKALELGAHAV 199 (221)
T ss_pred HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEE
Confidence 46788899998776543211111011122346777777653 355777778879999999999998754
No 242
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=80.26 E-value=13 Score=34.57 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
-++.|+.+.+.|++.+++ |..+ .+.+.++++.+++..|.+ .+.+|-| .+.+.+..+++.|+|++
T Consensus 198 tleqa~ea~~agaDiI~L-----Dn~~---~e~l~~av~~~~~~~~~~--~leaSGG-I~~~ni~~yA~tGvD~I 261 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQL-----DKFS---PQQATEIAQIAPSLAPHC--TLSLAGG-INLNTLKNYADCGIRLF 261 (284)
T ss_pred CHHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHHhhccCCCe--EEEEECC-CCHHHHHHHHhcCCCEE
Confidence 456677788899998887 3344 566777777776556644 4455544 59999999999999997
No 243
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=80.20 E-value=8.6 Score=36.01 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=53.3
Q ss_pred CCchhHHHHHHHHHHcC-CcEEEEEeecCCCC-------C--CCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHH
Q 026651 131 PDPMEPENTAKAIASWG-VDYIVLTSVDRDDI-------P--DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVE 200 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~G-l~y~VVTSg~RddL-------~--D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~ 200 (235)
++.+|.++.|+..++.| ++|+-|+.|+.... + ..+-..+.+.++.||+.. ++=|++..++-+.+.++
T Consensus 225 ~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~ipvi~~G~i~~~~~~~ 301 (343)
T cd04734 225 LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV---DLPVFHAGRIRDPAEAE 301 (343)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc---CCCEEeeCCCCCHHHHH
Confidence 56789999999999998 89998887754211 0 112234567777888754 35577777777888888
Q ss_pred HHHhcC-CCe
Q 026651 201 TLVHSG-LDV 209 (235)
Q Consensus 201 ~L~eAG-~d~ 209 (235)
++.+.| +|-
T Consensus 302 ~~l~~~~~D~ 311 (343)
T cd04734 302 QALAAGHADM 311 (343)
T ss_pred HHHHcCCCCe
Confidence 888765 554
No 244
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=79.96 E-value=8.4 Score=34.06 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh-cCCC
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SGLD 208 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e-AG~d 208 (235)
..+.+.++.+.+.|+++.++|+..|+.-. .|.+ .+.++++++.. .+-+.++.|..+.+.+.++++ .|++
T Consensus 153 ~~~~~~~~~~~~~g~~~ii~~~i~~~g~~-~g~d--~~~i~~~~~~~---~ipvia~GGv~s~~d~~~~~~~~G~~ 222 (253)
T PRK02083 153 LDAVEWAKEVEELGAGEILLTSMDRDGTK-NGYD--LELTRAVSDAV---NVPVIASGGAGNLEHFVEAFTEGGAD 222 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcCCCCC-CCcC--HHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhCCcc
Confidence 35667788889999999999998775322 2332 45666666643 478899999999999988886 4886
No 245
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=79.89 E-value=9.4 Score=35.40 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=55.7
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCC---------chHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG---------GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVE 200 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~---------ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~ 200 (235)
-++.+|..+.|+..++.|++++-|+.+........ .-..+.+.+++||+.. .+-|++.-++-+.+.++
T Consensus 232 g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i~t~~~a~ 308 (338)
T cd04733 232 GFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT---KTPLMVTGGFRTRAAME 308 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc---CCCEEEeCCCCCHHHHH
Confidence 36788999999999999999988887754222110 1123467778888754 45677777777899998
Q ss_pred HHHhcC-CCee
Q 026651 201 TLVHSG-LDVF 210 (235)
Q Consensus 201 ~L~eAG-~d~y 210 (235)
++.+.| +|.+
T Consensus 309 ~~l~~g~aD~V 319 (338)
T cd04733 309 QALASGAVDGI 319 (338)
T ss_pred HHHHcCCCCee
Confidence 888876 5654
No 246
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=79.77 E-value=6.2 Score=35.67 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=53.1
Q ss_pred CCchhHHHHHHHHHHcCCcE-EEE-EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEE--eecCCCCCHHHHHHHHhcC
Q 026651 131 PDPMEPENTAKAIASWGVDY-IVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC--LTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y-~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~iev--l~sdg~l~~e~l~~L~eAG 206 (235)
.+++...+.++++.++|++. ++. |.|.- .| ..+.+.++.+|+..|++.|++ --..|++....+..+ ++|
T Consensus 148 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~--~P----~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~-~aG 220 (273)
T cd07941 148 ANPEYALATLKAAAEAGADWLVLCDTNGGT--LP----HEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAV-EAG 220 (273)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCC--CH----HHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHH-HcC
Confidence 46888899999999999984 444 66643 33 478888889988877655544 445566666666665 689
Q ss_pred CCeec
Q 026651 207 LDVFA 211 (235)
Q Consensus 207 ~d~yn 211 (235)
+++++
T Consensus 221 a~~id 225 (273)
T cd07941 221 ATQVQ 225 (273)
T ss_pred CCEEE
Confidence 99876
No 247
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.66 E-value=14 Score=32.68 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCCceEEEeecCCCC-CHHHHHHHHhcCCCee
Q 026651 167 GHFARTVKAMKKQKPDIMVECLTSDFRG-DLRAVETLVHSGLDVF 210 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~~~ievl~sdg~l-~~e~l~~L~eAG~d~y 210 (235)
..+.+.|+.+|+..++.. +.+ +|-. +.++++.++++|+|.+
T Consensus 170 ~~~~~~i~~lr~~~~~~~--i~v-~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 170 VSVERNIKRVRNLVGNKY--LVV-GFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred HHHHHHHHHHHHhcCCCC--EEE-eCCcCCHHHHHHHHHcCCCEE
Confidence 445668888887665332 334 5555 9999999999999976
No 248
>PRK00955 hypothetical protein; Provisional
Probab=79.15 E-value=27 Score=35.95 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=34.6
Q ss_pred eeeeeec-CCCCCCCCCCcccCCCCCC--CCCCchhHHHHHHHHHHc-CCc
Q 026651 103 TATIMLL-GDTCTRGCRFCAVKTSRNP--APPDPMEPENTAKAIASW-GVD 149 (235)
Q Consensus 103 taT~mIl-G~~CtedC~FCAQSt~~~p--~~ld~eE~~~~A~aa~~~-Gl~ 149 (235)
+-.|.|. ...|.-+|.||+...+.-. ..-+.+++++.++...+. |.+
T Consensus 291 ~i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfk 341 (620)
T PRK00955 291 EVKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFK 341 (620)
T ss_pred eEEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCe
Confidence 4445555 7899999999999843212 357889999988888776 555
No 249
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=79.11 E-value=7.7 Score=35.88 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
..+|.++.|++.++.|++-+.|-++.. + .+++.+.+++++...|.+.+ ++++- ....-.++.|.+.|+.++-
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~----~--~~ei~~~~~~~~~~~p~~pl-~~~~~-~~~~~~~~eL~~lG~~~v~ 238 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKK----D--PDEILEFARRFRNHYPRTPL-VIVPT-SYYTTPTDEFRDAGISVVI 238 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCC----C--HHHHHHHHHHhhhhCCCCCE-EEecC-CCCCCCHHHHHHcCCCEEE
Confidence 357888888888888888666654321 1 35666666677665555444 34341 1111247888888998874
Q ss_pred c
Q 026651 212 H 212 (235)
Q Consensus 212 H 212 (235)
+
T Consensus 239 ~ 239 (285)
T TIGR02320 239 Y 239 (285)
T ss_pred E
Confidence 4
No 250
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=79.02 E-value=13 Score=33.80 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=52.7
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEee--cCCCCCHHHHHHHHhc
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFRGDLRAVETLVHS 205 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~--sdg~l~~e~l~~L~eA 205 (235)
..+++...+.++.+.++|++.+.+ |.|.- .| ..+.+.|+.|++..|++.|++-. -.|+.....+ .-.+|
T Consensus 145 ~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~--~P----~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~l-aA~~a 217 (274)
T cd07938 145 EVPPERVAEVAERLLDLGCDEISLGDTIGVA--TP----AQVRRLLEAVLERFPDEKLALHFHDTRGQALANIL-AALEA 217 (274)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCcc--CH----HHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHH-HHHHh
Confidence 358899999999999999985333 66643 23 47888899999888765555544 3344434444 44688
Q ss_pred CCCeecc
Q 026651 206 GLDVFAH 212 (235)
Q Consensus 206 G~d~ynH 212 (235)
|+++++-
T Consensus 218 Ga~~id~ 224 (274)
T cd07938 218 GVRRFDS 224 (274)
T ss_pred CCCEEEE
Confidence 9988763
No 251
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=78.97 E-value=1.2 Score=41.80 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=74.3
Q ss_pred CCCCCCCCCCcccCCCC--CC--CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceE
Q 026651 110 GDTCTRGCRFCAVKTSR--NP--APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV 185 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~--~p--~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~i 185 (235)
...|--.|.||-.|++. .| .++...||++.|.-....|++-.=+|-|.- +--.+..++..-+..+.... .+.|
T Consensus 18 te~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggep--tIr~di~~i~~g~~~l~gLk-s~~I 94 (323)
T KOG2876|consen 18 TEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEP--LIRQDIVPIVAGLSSLPGLK-SIGI 94 (323)
T ss_pred hhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCC--cccccccchhhhhhcccchh-hhce
Confidence 57899999999999766 22 368889999999999999998777776643 22234555555555444321 2333
Q ss_pred EEeecCCCCCHHHHHHHHhcCCCeeccCccc
Q 026651 186 ECLTSDFRGDLRAVETLVHSGLDVFAHNIET 216 (235)
Q Consensus 186 evl~sdg~l~~e~l~~L~eAG~d~ynHNLET 216 (235)
++.|.....++-.|.+||++-.|--|+|
T Consensus 95 ---Ttng~vl~R~lp~lhkaglssiNiSldt 122 (323)
T KOG2876|consen 95 ---TTNGLVLARLLPQLHKAGLSSINISLDT 122 (323)
T ss_pred ---eccchhhhhhhhHHHhhcccchhhhhhh
Confidence 4667777888999999999999999886
No 252
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=78.90 E-value=6.6 Score=36.06 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCCce--EEEeecCCCCCHHHHHHHHhc
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIM--VECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~--ievl~sdg~l~~e~l~~L~eA 205 (235)
..+++...+.++.+.++|++.+.+ |.|.- .| .++.+.|+.||+..|++. ++.---.|+.....+.. .++
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~--~P----~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA-~~a 223 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIGVG--TP----GQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYAS-LEE 223 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccCcc--CH----HHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHH-HHh
Confidence 367888999999999999874333 55543 23 478888888888776544 44444555555555544 488
Q ss_pred CCCeeccCcc
Q 026651 206 GLDVFAHNIE 215 (235)
Q Consensus 206 G~d~ynHNLE 215 (235)
|+++++--+.
T Consensus 224 G~~~id~s~~ 233 (287)
T PRK05692 224 GITVFDASVG 233 (287)
T ss_pred CCCEEEEEcc
Confidence 8888764443
No 253
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.82 E-value=14 Score=34.22 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
-++.|+.+.+.|++.+++-- -..+.+.++++.+++....-.+.+.+|-|. +.+.++.+++.|+|++.
T Consensus 191 ~leea~~a~~agaDiI~LDn--------~~~e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDN--------MTPEEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVIS 257 (278)
T ss_pred CHHHHHHHHHcCcCEEEECC--------CCHHHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 34556677788988655422 235678888888877541114556677666 99999999999999874
No 254
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.78 E-value=13 Score=34.59 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=45.3
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 139 ~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
.|+.+.+.|++.+++- +-..+.+.++++.+++..|.+. +.+|-| .+.+.+..+++.|+|++.
T Consensus 211 ea~eal~~gaDiI~LD--------nm~~e~vk~av~~~~~~~~~v~--ieaSGG-I~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 211 QLDEVLAEGAELVLLD--------NFPVWQTQEAVQRRDARAPTVL--LESSGG-LTLDTAAAYAETGVDYLA 272 (289)
T ss_pred HHHHHHHcCCCEEEeC--------CCCHHHHHHHHHHHhccCCCEE--EEEECC-CCHHHHHHHHhcCCCEEE
Confidence 5666677888877653 2336788888888877777554 445544 599999999999999974
No 255
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=78.73 E-value=13 Score=34.38 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
-++.|+.+.+.|++.+++- .-..+.+.+.++.+++..|.+. +.++-| .+.+.+..+++.|+|++
T Consensus 197 tleea~ea~~~GaDiI~lD--------n~~~e~l~~~v~~l~~~~~~~~--leasGG-I~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLD--------KFTPQQLHHLHERLKFFDHIPT--LAAAGG-INPENIADYIEAGIDLF 260 (277)
T ss_pred CHHHHHHHHHcCcCEEEEC--------CCCHHHHHHHHHHHhccCCCEE--EEEECC-CCHHHHHHHHhcCCCEE
Confidence 4566777888999887764 2236788888888876667554 445544 59999999999999997
No 256
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.72 E-value=12 Score=33.35 Aligned_cols=86 Identities=6% Similarity=0.023 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHH-cCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 134 MEPENTAKAIAS-WGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 134 eE~~~~A~aa~~-~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
..|.+.|+.-.+ .|++...|.--++ ...+-..-.++|++|.+. +.+.+.+--|.-+.|+++++.++|+++.-=
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~---a~~~~~~n~~~I~~i~~~---~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIG---AKAQHAREFDYIKSLRRL---TTKDIEVGGGIRTKSQIMDYFAAGINYCIV 104 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcc---cccCCcchHHHHHHHHhh---cCCeEEEcCCcCCHHHHHHHHHCCCCEEEE
Confidence 466678888888 6898544433322 112334557788888763 346778888999999999999999999987
Q ss_pred Ccccccc--cccccc
Q 026651 213 NIETVKR--LQRIVR 225 (235)
Q Consensus 213 NLETs~r--lfp~Vc 225 (235)
|-++..+ ++.++.
T Consensus 105 gt~a~~~~~~l~~~~ 119 (234)
T PRK13587 105 GTKGIQDTDWLKEMA 119 (234)
T ss_pred CchHhcCHHHHHHHH
Confidence 8777543 455444
No 257
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.59 E-value=12 Score=33.60 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=58.3
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
...+|.+.|+.-.+.|++...|.--++ ...+-..-.++|++|.+.. +.+.+--|.-+.|+++++.++|+++.-
T Consensus 28 ~~~dP~~~A~~~~~~ga~~lhivDLd~---a~~g~~~n~~~i~~i~~~~----~~v~vGGGIrs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 28 YEKDPAELVEKLIEEGFTLIHVVDLSK---AIENSVENLPVLEKLSEFA----EHIQIGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred ECCCHHHHHHHHHHCCCCEEEEEECCC---cccCCcchHHHHHHHHhhc----CcEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 346899999999999998544433322 1123445577888887753 356777888899999999999999987
Q ss_pred cCcccccc
Q 026651 212 HNIETVKR 219 (235)
Q Consensus 212 HNLETs~r 219 (235)
=|-++.++
T Consensus 101 igT~a~~~ 108 (241)
T PRK14114 101 VSSKVLED 108 (241)
T ss_pred ECchhhCC
Confidence 67666543
No 258
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=78.35 E-value=11 Score=34.15 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=56.7
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCC--CC-CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRD--DI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~Rd--dL-~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
..+++++.+.|+.-.+.|+++.=| .|.+-+ .. ++.|.+++..+|+.+++.. ++.|-+- .-+.+.++.-.+
T Consensus 19 ~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiD----T~~~~vi~~al~ 93 (257)
T TIGR01496 19 FLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVD----TYRAEVARAALE 93 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEe----CCCHHHHHHHHH
Confidence 478899999999999999998666 222111 11 2336778999999998752 2222222 237888888888
Q ss_pred cCCCeecc-Cccc
Q 026651 205 SGLDVFAH-NIET 216 (235)
Q Consensus 205 AG~d~ynH-NLET 216 (235)
+|++.+|| +.++
T Consensus 94 ~G~~iINsis~~~ 106 (257)
T TIGR01496 94 AGADIINDVSGGQ 106 (257)
T ss_pred cCCCEEEECCCCC
Confidence 89999998 5554
No 259
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=78.13 E-value=7.7 Score=38.54 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=50.3
Q ss_pred HHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCcc
Q 026651 142 AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIE 215 (235)
Q Consensus 142 aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLE 215 (235)
...+.|++++|+-|-.+ -..+..+.|+-||+.+|+ +++.+... .+.+|++.|++||+|.+.--+-
T Consensus 258 ll~~aGvdvviLDSSqG------nS~~qiemik~iK~~yP~--l~ViaGNV-VT~~qa~nLI~aGaDgLrVGMG 322 (503)
T KOG2550|consen 258 LLVQAGVDVVILDSSQG------NSIYQLEMIKYIKETYPD--LQIIAGNV-VTKEQAANLIAAGADGLRVGMG 322 (503)
T ss_pred HhhhcCCcEEEEecCCC------cchhHHHHHHHHHhhCCC--ceeeccce-eeHHHHHHHHHccCceeEeccc
Confidence 45567999999977644 357889999999999995 45555433 3799999999999998865554
No 260
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=77.77 E-value=15 Score=32.67 Aligned_cols=71 Identities=23% Similarity=0.256 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
.+|..+.+.|+.|+=.=-||=+|.-+.|++.+.++.+.+++..+++ ++++--+. +.+++-.+..+|.|.+-
T Consensus 113 ~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~t--kIlaAS~r-~~~~v~~~~~~G~d~vT 183 (213)
T TIGR00875 113 AQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDT--EVIAASVR-HPRHVLEAALIGADIAT 183 (213)
T ss_pred HHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCC--EEEEeccC-CHHHHHHHHHcCCCEEE
Confidence 3455666679888777777766666678888888888887765544 67777676 78888899999998764
No 261
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=77.70 E-value=10 Score=35.28 Aligned_cols=74 Identities=11% Similarity=0.155 Sum_probs=52.4
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHH-hcCCCe
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV-HSGLDV 209 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~-eAG~d~ 209 (235)
+.++..+.|+.+++.|+++..|..+++...-.+...++ +.|++||+.. +|-|++..+.-+.++++.+. ..|+|.
T Consensus 146 ~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~-~~i~~ik~~~---~iPVi~nGdI~t~~da~~~l~~~g~Dg 220 (312)
T PRK10550 146 SGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINW-QAIGEIRQRL---TIPVIANGEIWDWQSAQQCMAITGCDA 220 (312)
T ss_pred CchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccH-HHHHHHHhhc---CCcEEEeCCcCCHHHHHHHHhccCCCE
Confidence 34667899999999999988887666533222222233 6788888753 57788888888999888876 466663
No 262
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=77.63 E-value=13 Score=33.59 Aligned_cols=76 Identities=20% Similarity=0.167 Sum_probs=51.9
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEe---ecCCCCCC---------CchH------HHHHHHHHHHhhCCCceEEEeecCC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTS---VDRDDIPD---------GGSG------HFARTVKAMKKQKPDIMVECLTSDF 192 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTS---g~RddL~D---------~ga~------~~a~~Ir~Ik~~~p~~~ievl~sdg 192 (235)
.+.++..+.|+.+++.|+++.+|+. +...|+.. ++.. ...+.+.+|++.. .+-+.+.-|
T Consensus 166 ~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~---~ipvi~~GG 242 (300)
T TIGR01037 166 PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV---DIPIIGVGG 242 (300)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC---CCCEEEECC
Confidence 3557888999999999999877652 22111111 1111 1235666777643 477888999
Q ss_pred CCCHHHHHHHHhcCCCe
Q 026651 193 RGDLRAVETLVHSGLDV 209 (235)
Q Consensus 193 ~l~~e~l~~L~eAG~d~ 209 (235)
..+.+++.++.++|.|.
T Consensus 243 I~s~~da~~~l~~GAd~ 259 (300)
T TIGR01037 243 ITSFEDALEFLMAGASA 259 (300)
T ss_pred CCCHHHHHHHHHcCCCc
Confidence 99999999999999875
No 263
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=77.04 E-value=8 Score=34.44 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=49.1
Q ss_pred CCchhHHHHHHHHHHcCCcE-EEE-EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEe--ecCCCCCHHHHHHHHhcC
Q 026651 131 PDPMEPENTAKAIASWGVDY-IVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL--TSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y-~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl--~sdg~l~~e~l~~L~eAG 206 (235)
.+++...+.++.+.++|++. ++. |.|.- .| ..+.+.|+.+++..| +.|++- --.|+...-.+..+ ++|
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~--~P----~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi-~aG 207 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTVGIL--DP----FTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAV-RAG 207 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--CH----HHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHH-HhC
Confidence 67889999999999999874 444 66643 33 477888888887765 444444 44455545555444 788
Q ss_pred CCeec
Q 026651 207 LDVFA 211 (235)
Q Consensus 207 ~d~yn 211 (235)
+++++
T Consensus 208 ~~~vd 212 (259)
T cd07939 208 ATHVS 212 (259)
T ss_pred CCEEE
Confidence 88764
No 264
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=76.91 E-value=9.3 Score=34.62 Aligned_cols=75 Identities=17% Similarity=0.075 Sum_probs=51.3
Q ss_pred CCCchhHHHHHHHHHHcCCcE-EEE-EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEee--cCCCCCHHHHHHHHhc
Q 026651 130 PPDPMEPENTAKAIASWGVDY-IVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFRGDLRAVETLVHS 205 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y-~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~--sdg~l~~e~l~~L~eA 205 (235)
..+++...+.++.+.++|++. .+. |.|.- .| .++.+.|++||+..+ +.|++-. -.|+.....+..+ ++
T Consensus 145 ~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~--~P----~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~-~a 216 (275)
T cd07937 145 VHTLEYYVKLAKELEDMGADSICIKDMAGLL--TP----YAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAA-EA 216 (275)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC--CH----HHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHH-Hh
Confidence 467889999999999999884 444 66643 23 478888888888765 4455543 4555555555554 67
Q ss_pred CCCeecc
Q 026651 206 GLDVFAH 212 (235)
Q Consensus 206 G~d~ynH 212 (235)
|++.++-
T Consensus 217 Ga~~vd~ 223 (275)
T cd07937 217 GVDIVDT 223 (275)
T ss_pred CCCEEEE
Confidence 8887764
No 265
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=76.87 E-value=19 Score=33.09 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=58.2
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEeecCCC-CCC-CchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPD-GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rdd-L~D-~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
..++.++-+++|+...+.|+++.=++|-..++ .+. .+. .+.++.|++ .+++.+-.+++ +.+.+++.+++|
T Consensus 21 ~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~---~e~~~~l~~-~~~~~~~~l~~----~~~~ie~A~~~g 92 (287)
T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADA---AEVMAGIQR-RPGVTYAALTP----NLKGLEAALAAG 92 (287)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccH---HHHHHhhhc-cCCCeEEEEec----CHHHHHHHHHcC
Confidence 46899999999999999999987777554432 121 112 466666754 45666666664 789999999999
Q ss_pred CCeeccCccccc
Q 026651 207 LDVFAHNIETVK 218 (235)
Q Consensus 207 ~d~ynHNLETs~ 218 (235)
++.++==+-+++
T Consensus 93 ~~~v~i~~~~s~ 104 (287)
T PRK05692 93 ADEVAVFASASE 104 (287)
T ss_pred CCEEEEEEecCH
Confidence 998775444444
No 266
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.85 E-value=18 Score=32.01 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC---CCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK---PDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~---p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
..+.++...++++..+.|++..=||--.- ...+.|++|++++ |++.|+.= -.++.++++..+++|
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iEit~~~~---------~a~~~i~~l~~~~~~~p~~~vGaG---TV~~~~~~~~a~~aG 88 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVTYTNP---------FASEVIKELVELYKDDPEVLIGAG---TVLDAVTARLAILAG 88 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCc---------cHHHHHHHHHHHcCCCCCeEEeee---eCCCHHHHHHHHHcC
Confidence 36889999999999999999777776421 3467888898876 44444332 246899999999999
Q ss_pred CCee
Q 026651 207 LDVF 210 (235)
Q Consensus 207 ~d~y 210 (235)
.+-+
T Consensus 89 A~Fi 92 (213)
T PRK06552 89 AQFI 92 (213)
T ss_pred CCEE
Confidence 9755
No 267
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=76.46 E-value=11 Score=33.38 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCc
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNI 214 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNL 214 (235)
.|.+.|+.-.+. ++..++ ++.|.. ..|...-.+.|++|.+. +.+.+.++-|.-+.|++++|.++|+++.-=|-
T Consensus 31 dp~~~a~~~~~~-~~~l~i--vDldga-~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHV--VDLDGA-FEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CHHHHHHHHHHh-CCEEEE--EECcch-hcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 577888888887 886666 444311 12333346677777764 35678999999999999999999999765554
Q ss_pred ccc
Q 026651 215 ETV 217 (235)
Q Consensus 215 ETs 217 (235)
++.
T Consensus 104 aa~ 106 (228)
T PRK04128 104 KAF 106 (228)
T ss_pred hhc
Confidence 444
No 268
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=76.33 E-value=12 Score=35.57 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEee----cCCCC---CCCchHHHHHHHHHHHhhCCCceE---------------EE
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSV----DRDDI---PDGGSGHFARTVKAMKKQKPDIMV---------------EC 187 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg----~RddL---~D~ga~~~a~~Ir~Ik~~~p~~~i---------------ev 187 (235)
-+..+.+.+..+.+.++|++-+++--+ .+|.. ...+=.-+.++|+.||+..|++.| ++
T Consensus 50 r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGi 129 (320)
T cd04823 50 RLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGI 129 (320)
T ss_pred eeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCccee
Confidence 367799999999999999984444333 23311 001123589999999999998542 12
Q ss_pred eecCCCCCHHHHHHH-------HhcCCCeec
Q 026651 188 LTSDFRGDLRAVETL-------VHSGLDVFA 211 (235)
Q Consensus 188 l~sdg~l~~e~l~~L-------~eAG~d~yn 211 (235)
+-..+..+.+.++.| ++||.|+++
T Consensus 130 l~~~~idND~Tl~~L~~~Avs~A~AGADiVA 160 (320)
T cd04823 130 VRDGGILNDETVEVLCKQALVQAEAGADIVA 160 (320)
T ss_pred ccCCcCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 222234466666655 578888764
No 269
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=76.29 E-value=25 Score=30.28 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=55.3
Q ss_pred CCchhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHH----HHHHhc
Q 026651 131 PDPMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAV----ETLVHS 205 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l----~~L~eA 205 (235)
...+.....++.+.++|++ ..+|--... +.++..+++.+-+.++++...+..+.+....+.++.+++ +...++
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~--~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~ 143 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGA--LKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEA 143 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHH--HhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3456666778889999998 445544433 556667888888999988765566777788888886664 455677
Q ss_pred CCCee
Q 026651 206 GLDVF 210 (235)
Q Consensus 206 G~d~y 210 (235)
|+|.+
T Consensus 144 GaD~I 148 (203)
T cd00959 144 GADFI 148 (203)
T ss_pred CCCEE
Confidence 87753
No 270
>PRK01362 putative translaldolase; Provisional
Probab=76.24 E-value=16 Score=32.40 Aligned_cols=72 Identities=18% Similarity=0.103 Sum_probs=54.3
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 139 ~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
.|..+.+.|+.|+-.=-||=+|....++..+.+..+.+++... ..++++--+. +.+++-.+..+|+|.+-=.
T Consensus 114 Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~--~tkilaAS~r-~~~~v~~~~~~G~d~iTi~ 185 (214)
T PRK01362 114 QALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGF--DTEIIAASVR-HPMHVLEAALAGADIATIP 185 (214)
T ss_pred HHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCC--CcEEEEeecC-CHHHHHHHHHcCCCEEecC
Confidence 4555666799987777787777777788888888888876543 3477776666 7889999999999876444
No 271
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=75.76 E-value=12 Score=35.19 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=53.5
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCC-CCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC-C
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIP-DGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-L 207 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~-D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG-~ 207 (235)
-++.+|..++|+..++.|++|+-|+.|.....+ +..-..+....+.||+.. ++-|.+..++-+.+.++++++.| +
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~---~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA---NIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc---CCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 467899999999999999999999888531101 100112445667777753 45567777777899899988887 5
Q ss_pred Ce
Q 026651 208 DV 209 (235)
Q Consensus 208 d~ 209 (235)
|-
T Consensus 300 D~ 301 (337)
T PRK13523 300 DL 301 (337)
T ss_pred Ch
Confidence 54
No 272
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.67 E-value=29 Score=32.16 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=52.4
Q ss_pred CCCCCchhHHH-------HHHHHHHcCCcEEEEEee--------------cCCCCC----CCchHHHHHHHHHHHhhC-C
Q 026651 128 PAPPDPMEPEN-------TAKAIASWGVDYIVLTSV--------------DRDDIP----DGGSGHFARTVKAMKKQK-P 181 (235)
Q Consensus 128 p~~ld~eE~~~-------~A~aa~~~Gl~y~VVTSg--------------~RddL~----D~ga~~~a~~Ir~Ik~~~-p 181 (235)
|..++.+|+.+ .|+.+++.|.+-+=|-.+ +|.|-- +.-.....++|++||+.. +
T Consensus 136 p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~ 215 (338)
T cd04733 136 PRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGP 215 (338)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 34577777754 488888899875544322 332211 113677889999999876 3
Q ss_pred CceEEEeec------CCCCCH----HHHHHHHhcCCCeec
Q 026651 182 DIMVECLTS------DFRGDL----RAVETLVHSGLDVFA 211 (235)
Q Consensus 182 ~~~ievl~s------dg~l~~----e~l~~L~eAG~d~yn 211 (235)
+..|.+-++ .|. +. +-++.|.++|+|.++
T Consensus 216 d~~v~vris~~~~~~~g~-~~eea~~ia~~Le~~Gvd~ie 254 (338)
T cd04733 216 GFPVGIKLNSADFQRGGF-TEEDALEVVEALEEAGVDLVE 254 (338)
T ss_pred CCeEEEEEcHHHcCCCCC-CHHHHHHHHHHHHHcCCCEEE
Confidence 555666554 233 42 335788899999887
No 273
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=75.56 E-value=16 Score=32.72 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=52.2
Q ss_pred CCCchhHHHHHHHHHHcCCcE-EEE-EeecCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEeec--CCCCCHHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDY-IVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTS--DFRGDLRAVETLV 203 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y-~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~--~~ievl~s--dg~l~~e~l~~L~ 203 (235)
..+++...+.++.+.++|++. ++. |.|.- .| .++.+.|+.||+..|+ +.|++-.- .|+...-.+.. .
T Consensus 139 ~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~--~P----~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laA-i 211 (268)
T cd07940 139 RTDLDFLIEVVEAAIEAGATTINIPDTVGYL--TP----EEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAA-V 211 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCC--CH----HHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHH-H
Confidence 367899999999999999974 444 77753 33 5888899999988775 55555543 44444444444 4
Q ss_pred hcCCCeec
Q 026651 204 HSGLDVFA 211 (235)
Q Consensus 204 eAG~d~yn 211 (235)
++|+++++
T Consensus 212 ~aG~~~iD 219 (268)
T cd07940 212 EAGARQVE 219 (268)
T ss_pred HhCCCEEE
Confidence 78998875
No 274
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=75.50 E-value=12 Score=34.34 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=47.3
Q ss_pred cCCc-EEEEEeecCCC-CCCCchHHHHHHHHHHHhhC-CCceEEEeecCCCCCHHHHHHHHhc
Q 026651 146 WGVD-YIVLTSVDRDD-IPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 146 ~Gl~-y~VVTSg~Rdd-L~D~ga~~~a~~Ir~Ik~~~-p~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
..+. |++|--..+|- .++.|++.+.+-|+.+|+.. .+.-+++|.++|.+|.+.+++|.++
T Consensus 50 ~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~ 112 (248)
T PRK11572 50 VTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAA 112 (248)
T ss_pred cCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH
Confidence 3565 77775544432 26789999999999999863 5677999999999999999988876
No 275
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=74.87 E-value=38 Score=30.62 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=44.1
Q ss_pred eeeeeecCCCCCCCCCCcccCCCCC---C---CCCCchhHHHHHHHHHHc-CCcEEEEEeecCCCCCCCchHHHHHHHHH
Q 026651 103 TATIMLLGDTCTRGCRFCAVKTSRN---P---APPDPMEPENTAKAIASW-GVDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (235)
Q Consensus 103 taT~mIlG~~CtedC~FCAQSt~~~---p---~~ld~eE~~~~A~aa~~~-Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~ 175 (235)
...+.|---.|+-+|.||.--.... + ..++++++.+.| ... +.+-+.+|-|. +-=-.+.+.+..++
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~---~~~~~~~gvt~SGGE----P~~q~e~~~~~~~~ 107 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKA---FYSESGGGVTFSGGE----PTLQAEFALDLLRA 107 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHh---hhcCCCCEEEEECCc----chhhHHHHHHHHHH
Confidence 3445566678999999997541110 1 123333332222 111 22233333331 11224455555555
Q ss_pred HHhhCCCceEEEeecCCCCCHHHHHHHHhc
Q 026651 176 MKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 176 Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
.|+. ++. -++.+.|...++.++.|.+.
T Consensus 108 ake~--Gl~-~~l~TnG~~~~~~~~~l~~~ 134 (260)
T COG1180 108 AKER--GLH-VALDTNGFLPPEALEELLPL 134 (260)
T ss_pred HHHC--CCc-EEEEcCCCCCHHHHHHHHhh
Confidence 5554 222 22445566666666666655
No 276
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=74.85 E-value=17 Score=33.28 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=50.3
Q ss_pred CCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEee--cCCCCCHHHHHHHHhcC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFRGDLRAVETLVHSG 206 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~--sdg~l~~e~l~~L~eAG 206 (235)
.+++...+.++++.++|++.+.+ |.|.- .| .++.+.++.+++..|++.|++-. -.|+.....+ .-.++|
T Consensus 144 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~--~P----~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~l-aA~~aG 216 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPIKRIMLPDTLGIL--SP----FETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVL-AAVKAG 216 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCC--CH----HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHH-HHHHhC
Confidence 46789999999999999985333 66653 23 47888888888877765555543 3344334444 346788
Q ss_pred CCeecc
Q 026651 207 LDVFAH 212 (235)
Q Consensus 207 ~d~ynH 212 (235)
+++++-
T Consensus 217 a~~vd~ 222 (280)
T cd07945 217 IKGLHT 222 (280)
T ss_pred CCEEEE
Confidence 887753
No 277
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=74.83 E-value=14 Score=38.58 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc---
Q 026651 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH--- 212 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH--- 212 (235)
+.++++++.+.|.+.++|.|-+. .-.+.+.+++++||+...+ .+-+++- |..-++..+.|+++|+|.|-|
T Consensus 622 ~e~~v~aa~~~~a~ivvlcs~d~-----~~~e~~~~l~~~Lk~~G~~-~v~vl~G-G~~~~~~~~~l~~aGvD~~i~~g~ 694 (714)
T PRK09426 622 PEEAARQAVENDVHVVGVSSLAA-----GHKTLVPALIEALKKLGRE-DIMVVVG-GVIPPQDYDFLYEAGVAAIFGPGT 694 (714)
T ss_pred HHHHHHHHHHcCCCEEEEeccch-----hhHHHHHHHHHHHHhcCCC-CcEEEEe-CCCChhhHHHHHhCCCCEEECCCC
Confidence 44667788888999888877643 3366788899999987432 2444543 443456668999999998876
Q ss_pred C-cccccccccccc
Q 026651 213 N-IETVKRLQRIVR 225 (235)
Q Consensus 213 N-LETs~rlfp~Vc 225 (235)
| +|+...+...+.
T Consensus 695 d~~~~L~~l~~~l~ 708 (714)
T PRK09426 695 VIADAAIDLLELLS 708 (714)
T ss_pred CHHHHHHHHHHHHH
Confidence 3 345555555554
No 278
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=74.73 E-value=16 Score=33.20 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=44.4
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+..+-+ +.|..+...|++|+.+-.. . .+.+.+.++.+++. |. +-+.++ |-.+.+.+..++++|+|.+
T Consensus 186 vev~t~-eea~~A~~~gaD~I~ld~~-----~---~e~l~~~v~~i~~~-~~--i~i~as-GGIt~~ni~~~a~~Gad~I 252 (269)
T cd01568 186 VEVETL-EEAEEALEAGADIIMLDNM-----S---PEELKEAVKLLKGL-PR--VLLEAS-GGITLENIRAYAETGVDVI 252 (269)
T ss_pred EecCCH-HHHHHHHHcCCCEEEECCC-----C---HHHHHHHHHHhccC-CC--eEEEEE-CCCCHHHHHHHHHcCCCEE
Confidence 334444 3355556779999888333 2 25566666666654 43 334444 5569999999999999998
Q ss_pred c
Q 026651 211 A 211 (235)
Q Consensus 211 n 211 (235)
.
T Consensus 253 s 253 (269)
T cd01568 253 S 253 (269)
T ss_pred E
Confidence 5
No 279
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.72 E-value=23 Score=31.53 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
.+|.+.|+.-.+.|++...|.--++ ... -..-.+.|++|.+... ..+-+.-|.-+.|+++++.++|++++-=|
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~--a~~--~~~n~~~i~~i~~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~kvvig 102 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDA--AEG--VGNNEMYIKEISKIGF---DWIQVGGGIRDIEKAKRLLSLDVNALVFS 102 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC--cCC--CcchHHHHHHHHhhCC---CCEEEeCCcCCHHHHHHHHHCCCCEEEEC
Confidence 4799999999999998655544433 112 1222388888876421 24566678889999999999999999877
Q ss_pred ccccc
Q 026651 214 IETVK 218 (235)
Q Consensus 214 LETs~ 218 (235)
-++.+
T Consensus 103 t~a~~ 107 (232)
T PRK13586 103 TIVFT 107 (232)
T ss_pred chhhC
Confidence 77643
No 280
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=74.62 E-value=30 Score=30.89 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=51.5
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCC-----CCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC----HHHHHHH
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRD-----DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETL 202 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~Rd-----dL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~----~e~l~~L 202 (235)
++++..+.|+.+.+.|++.+-|.-+--. ++ ....+.+.+++++||+.. +.-|-+=++.+. + .+.++.|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~-~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~-~~~~~~~~a~~l 185 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQL-GQDPEAVANLLKAVKAAV-DIPLLVKLSPYF-DLEDIVELAKAA 185 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCccc-ccCHHHHHHHHHHHHHcc-CCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 5689999999999999997766533110 11 124678889999999763 222222223222 3 4667889
Q ss_pred HhcCCCeec-cC
Q 026651 203 VHSGLDVFA-HN 213 (235)
Q Consensus 203 ~eAG~d~yn-HN 213 (235)
.++|+|.+. ||
T Consensus 186 ~~~Gad~i~~~~ 197 (289)
T cd02810 186 ERAGADGLTAIN 197 (289)
T ss_pred HHcCCCEEEEEc
Confidence 999999876 44
No 281
>PF15088 NADH_dh_m_C1: NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Probab=74.57 E-value=2.9 Score=29.37 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=18.6
Q ss_pred CCCCCCCCCCccceecCCCCccHH
Q 026651 44 TGRDPDVKKPEWLRQKAPQGQRFQ 67 (235)
Q Consensus 44 ~~~~~~~~~P~Wlk~~~~~~~~~~ 67 (235)
..|+|...+|.||||-+.-|...-
T Consensus 3 yvr~P~~~kPnWlkVGLtlGts~f 26 (49)
T PF15088_consen 3 YVREPPNAKPNWLKVGLTLGTSVF 26 (49)
T ss_pred cccCCCCCCCChhheeeecchHHH
Confidence 357787889999999888776543
No 282
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=74.30 E-value=28 Score=32.91 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=56.6
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
..++.++..++|+...++|++++=+.+-.. ++++ .+.++.|.+..+.+.|-. ....+.+.+++++++|++
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~---~~~~----~e~i~~i~~~~~~~~v~~---~~r~~~~di~~a~~~g~~ 86 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGFPIA---SEGE----FEAIKKISQEGLNAEICS---LARALKKDIDKAIDCGVD 86 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---ChHH----HHHHHHHHhcCCCcEEEE---EcccCHHHHHHHHHcCcC
Confidence 368999999999999999999877766533 2322 466777776655444433 345789999999999999
Q ss_pred eeccCccc
Q 026651 209 VFAHNIET 216 (235)
Q Consensus 209 ~ynHNLET 216 (235)
.++-=+=+
T Consensus 87 ~i~i~~~~ 94 (363)
T TIGR02090 87 SIHTFIAT 94 (363)
T ss_pred EEEEEEcC
Confidence 87653333
No 283
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=74.01 E-value=12 Score=33.08 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=58.2
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.....|++.|+.-.+.|++...|.--++ .. +-..-.++|++|.+.. .+.+.+.-|.-+.|+++++.++|.++.
T Consensus 32 ~~~~dp~~~a~~~~~~g~~~l~i~DLd~--~~--~~~~n~~~i~~i~~~~---~~~v~vgGGir~~edv~~~l~~Ga~~v 104 (233)
T cd04723 32 CSTSDPLDVARAYKELGFRGLYIADLDA--IM--GRGDNDEAIRELAAAW---PLGLWVDGGIRSLENAQEWLKRGASRV 104 (233)
T ss_pred ccCCCHHHHHHHHHHCCCCEEEEEeCcc--cc--CCCccHHHHHHHHHhC---CCCEEEecCcCCHHHHHHHHHcCCCeE
Confidence 3356899999999999998544432222 11 2333466777777643 356667779999999999999999988
Q ss_pred ccCcccccc
Q 026651 211 AHNIETVKR 219 (235)
Q Consensus 211 nHNLETs~r 219 (235)
-=|-||..+
T Consensus 105 iigt~~~~~ 113 (233)
T cd04723 105 IVGTETLPS 113 (233)
T ss_pred EEcceeccc
Confidence 878887653
No 284
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=73.89 E-value=20 Score=30.13 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=38.9
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCCchH-HH-HHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 140 AKAIASWGVDYIVLTSVDRDDIPDGGSG-HF-ARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 140 A~aa~~~Gl~y~VVTSg~RddL~D~ga~-~~-a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+..+.+.|++|+.+..+.-. ....+.. .. .+.++.+++..++ +.+.+- |-.+.+.+..+.++|.+.+.
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~--~~v~a~-GGI~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPT-PTKKDAKAPQGLEGLREIRAAVGD--IPIVAI-GGITPENAPEVLEAGADGVA 186 (212)
T ss_pred HHHHhHcCCCEEEECCccCC-CCCCCCCCCCCHHHHHHHHHhcCC--CCEEEE-CCcCHHHHHHHHHcCCCEEE
Confidence 45666789999887544221 1111110 01 3444555544433 334443 44489999999999998874
No 285
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=73.70 E-value=30 Score=31.77 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred CCCCCCchhHHHHHHHHH-HcCCcEEEE-EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 127 NPAPPDPMEPENTAKAIA-SWGVDYIVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 127 ~p~~ld~eE~~~~A~aa~-~~Gl~y~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
.|.+++.+++...|..++ =+|.+.+-+ .|+.-++... .+.|+.+++. ..+..--|.=+.|+++++++
T Consensus 143 ~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~------~e~v~~v~~~-----~~LivGGGIrs~E~A~~~a~ 211 (240)
T COG1646 143 KPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVP------VEMVSRVLSD-----TPLIVGGGIRSPEQAREMAE 211 (240)
T ss_pred ccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcC------HHHHHHhhcc-----ceEEEcCCcCCHHHHHHHHH
Confidence 357899999887766665 567775444 3333333332 4555666653 26788899999999999999
Q ss_pred cCCCee
Q 026651 205 SGLDVF 210 (235)
Q Consensus 205 AG~d~y 210 (235)
||.|.+
T Consensus 212 agAD~I 217 (240)
T COG1646 212 AGADTI 217 (240)
T ss_pred cCCCEE
Confidence 999875
No 286
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=73.57 E-value=19 Score=34.44 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=51.4
Q ss_pred CCCchhHHHHHHHHHHcCCc----EEEEEeecCCCC---CCCchHHHHHHHHHHHhhCCCceEE---------------E
Q 026651 130 PPDPMEPENTAKAIASWGVD----YIVLTSVDRDDI---PDGGSGHFARTVKAMKKQKPDIMVE---------------C 187 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~----y~VVTSg~RddL---~D~ga~~~a~~Ir~Ik~~~p~~~ie---------------v 187 (235)
-++.++.++.|+.+.++|++ |.|+....+|.. ....-.-+.++||+||+..|++.|= +
T Consensus 57 r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGi 136 (330)
T COG0113 57 RYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGI 136 (330)
T ss_pred eccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCcccc
Confidence 37789999999999999998 444432223211 0011236889999999998864321 1
Q ss_pred eecCC-CCCHHHHHHH-------HhcCCCeec
Q 026651 188 LTSDF-RGDLRAVETL-------VHSGLDVFA 211 (235)
Q Consensus 188 l~sdg-~l~~e~l~~L-------~eAG~d~yn 211 (235)
+-.++ .++.+.++.| ++||.|+++
T Consensus 137 l~~~~~V~ND~Tle~l~k~Avs~AeAGAdivA 168 (330)
T COG0113 137 LDDGGYVDNDETLEILAKQAVSQAEAGADIVA 168 (330)
T ss_pred ccCCCeecchHHHHHHHHHHHHHHHcCCCeec
Confidence 11222 3566666665 467887764
No 287
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=73.45 E-value=23 Score=31.62 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC---
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG--- 206 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG--- 206 (235)
.++.++..++++...+.|++++=|++... ...+ .+.++.+++..|++.+-.++ ..+.+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~---~~~~----~~~~~~l~~~~~~~~~~~l~---r~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAA---SPGD----FEAVKRIAREVLNAEICGLA---RAVKKDIDAAAEALKPA 85 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---CHHH----HHHHHHHHHhCCCCEEEEEc---cCCHhhHHHHHHhCCCC
Confidence 68899999999999999999988887642 1222 26778887767777766665 34688899999999
Q ss_pred -CCeec
Q 026651 207 -LDVFA 211 (235)
Q Consensus 207 -~d~yn 211 (235)
+++++
T Consensus 86 ~~~~i~ 91 (268)
T cd07940 86 KVDRIH 91 (268)
T ss_pred CCCEEE
Confidence 76543
No 288
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=73.10 E-value=17 Score=33.40 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=48.8
Q ss_pred cCCc-EEEEEeecCCCC-CCCchHHHHHHHHHHHhh-CCCceEEEeecCCCCCHHHHHHHHhc
Q 026651 146 WGVD-YIVLTSVDRDDI-PDGGSGHFARTVKAMKKQ-KPDIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 146 ~Gl~-y~VVTSg~RddL-~D~ga~~~a~~Ir~Ik~~-~p~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
..+- |.+|--.-+|=. ++.|++-+.+=|+..|+. .+++-+++|.+||.+|.+.+++|.++
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~a 112 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEA 112 (241)
T ss_pred cCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHH
Confidence 5665 777765544422 778999999999999986 58889999999999999999999875
No 289
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=73.07 E-value=16 Score=33.55 Aligned_cols=89 Identities=6% Similarity=-0.035 Sum_probs=60.6
Q ss_pred CCCch-hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 130 PPDPM-EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 130 ~ld~e-E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
.|+.+ ++.++.+.+.+.|++|+--.+|... ..--.+++.-..+.+++..-.-.+.+=++-|.-+.+++..+.++|-+
T Consensus 142 ~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~--~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 142 ELKDEALIRKASEIAIKAGADFIKTSTGKVP--VNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEcCCCCCC--CCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 57777 4999999999999999887777541 11223333333333332210124788899999999999999999988
Q ss_pred eeccCcccccccc
Q 026651 209 VFAHNIETVKRLQ 221 (235)
Q Consensus 209 ~ynHNLETs~rlf 221 (235)
++.-+-=| ++.|
T Consensus 220 ~lg~~~~~-~~~f 231 (257)
T PRK05283 220 ILGADWAD-ARHF 231 (257)
T ss_pred HhChhhcC-cccE
Confidence 88776544 4444
No 290
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=73.05 E-value=9.4 Score=35.87 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=47.9
Q ss_pred CCCchhHHHHHHHHHHcCCc-EEEE-EeecCCCCCCCchHHHHHHHHHHHhhCC-CceEEEe--ecCCCCCHHHHHHHHh
Q 026651 130 PPDPMEPENTAKAIASWGVD-YIVL-TSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECL--TSDFRGDLRAVETLVH 204 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~-y~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~~ievl--~sdg~l~~e~l~~L~e 204 (235)
..++++..+.|+.+.+.|++ ++++ |.|.- +| +.+.+.|+++|+..+ ++.|++- --+|+.-...+.. .+
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~--~P----~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaA-i~ 211 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVDSAGAM--LP----DDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAA-IE 211 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccCCCCC--CH----HHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHH-HH
Confidence 35678899999999999987 4555 55542 33 377778888877653 4444443 4444444444444 47
Q ss_pred cCCCeec
Q 026651 205 SGLDVFA 211 (235)
Q Consensus 205 AG~d~yn 211 (235)
+|+++++
T Consensus 212 aGa~~iD 218 (333)
T TIGR03217 212 AGATRID 218 (333)
T ss_pred hCCCEEE
Confidence 8888754
No 291
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=72.51 E-value=18 Score=33.98 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=47.1
Q ss_pred CCCchhHHHHHHHHHHcCCc-EEEE-EeecCCCCCCCchHHHHHHHHHHHhhC-CCceEEEee--cCCCCCHHHHHHHHh
Q 026651 130 PPDPMEPENTAKAIASWGVD-YIVL-TSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLT--SDFRGDLRAVETLVH 204 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~-y~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~-p~~~ievl~--sdg~l~~e~l~~L~e 204 (235)
..++++..+.|+.+.+.|++ +.++ |.|.- .| +.+.+.|++|++.. |++.|++-. -+|+.-.-.+.. .+
T Consensus 140 ~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~--~P----~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaA-i~ 212 (337)
T PRK08195 140 MAPPEKLAEQAKLMESYGAQCVYVVDSAGAL--LP----EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAA-VE 212 (337)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEeCCCCCCC--CH----HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHH-HH
Confidence 35778888888888888887 3444 66643 33 37778888888765 565555543 333333444433 36
Q ss_pred cCCCeec
Q 026651 205 SGLDVFA 211 (235)
Q Consensus 205 AG~d~yn 211 (235)
+|++++.
T Consensus 213 aGa~~iD 219 (337)
T PRK08195 213 AGATRID 219 (337)
T ss_pred hCCCEEE
Confidence 8877654
No 292
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=72.38 E-value=29 Score=33.18 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=38.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEee--cCCCC---CCCchHHHHHHHHHHHhhCCCce
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSV--DRDDI---PDGGSGHFARTVKAMKKQKPDIM 184 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg--~RddL---~D~ga~~~a~~Ir~Ik~~~p~~~ 184 (235)
-+..+++.+.++.+.++|++.+++--+ .+|.. ...+=.-+.++|+.||+..|++.
T Consensus 55 r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~ 114 (323)
T PRK09283 55 RLSIDLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYNPDGLVQRAIRAIKKAFPELG 114 (323)
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccCCCCHHHHHHHHHHHhCCCcE
Confidence 367899999999999999996555443 22211 00112348999999999999754
No 293
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.14 E-value=22 Score=31.82 Aligned_cols=82 Identities=12% Similarity=0.121 Sum_probs=56.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE-EeecCCCC----CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL-TSVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV-TSg~RddL----~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
..|.+++++.|+.-.+.|+++.=| .-..|++. .+.|.+++..+|++|++.. ++-|-+- .-+.+.++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSID----T~~~~v~~aaL~ 94 (258)
T cd00423 20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVD----TFNAEVAEAALK 94 (258)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEe----CCcHHHHHHHHH
Confidence 478999999999999999997555 22233332 4568889999999998653 2223222 336777777777
Q ss_pred cCCCeecc-Cccc
Q 026651 205 SGLDVFAH-NIET 216 (235)
Q Consensus 205 AG~d~ynH-NLET 216 (235)
+|.+.+|- |.++
T Consensus 95 ~g~~iINdis~~~ 107 (258)
T cd00423 95 AGADIINDVSGGR 107 (258)
T ss_pred hCCCEEEeCCCCC
Confidence 77777765 4444
No 294
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=71.99 E-value=20 Score=32.47 Aligned_cols=75 Identities=27% Similarity=0.273 Sum_probs=55.0
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
..++.++.+++++...+.|++++=|+|... ..+.++.++.|.+..... ++ ......+.+.++..+++|++
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~P~~-------~~~~~~~~~~l~~~~~~~--~v-~~~~r~~~~di~~a~~~g~~ 86 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTSPAA-------SPQSRADCEAIAKLGLKA--KI-LTHIRCHMDDARIAVETGVD 86 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEECCCC-------CHHHHHHHHHHHhCCCCC--cE-EEEecCCHHHHHHHHHcCcC
Confidence 368999999999999999999988888543 234566666665433222 33 33457789999999999999
Q ss_pred eeccC
Q 026651 209 VFAHN 213 (235)
Q Consensus 209 ~ynHN 213 (235)
.++==
T Consensus 87 ~i~i~ 91 (262)
T cd07948 87 GVDLV 91 (262)
T ss_pred EEEEE
Confidence 86643
No 295
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=71.36 E-value=26 Score=30.86 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=46.9
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+.+.-.+.|+.+.+.++...+|-+-. ..++.+++.+.|+.+....|.-+.-.+ .|.+++.++-.+...|+|.|-
T Consensus 66 ~~~lR~~s~~~l~~~~~~g~~igGl~----~~~~~~~~~~~l~~i~~~lp~~~pr~l--~G~~~P~~i~~~v~~GvD~fD 139 (238)
T PF01702_consen 66 DKDLRRRSAEELSEDGFDGYAIGGLS----PGEEKEERLEILEAIINNLPPDKPRYL--LGVGTPEEILEAVYLGVDLFD 139 (238)
T ss_dssp -HHHHHHHHHHHHHSS-SEEEE-SSS----SSSHHHHHHHHHHHHHHCS-TTS-EEE--TTB-SHHHHHHHHHTT--EEE
T ss_pred CHHHHHHHHHHHHhcccccccccCCc----CCCCHHHHHHHHHHHHhhCCcccceec--cCCCCHHHHHHHHHcCCcEEc
Confidence 34455566777777556544444322 123578999999999887664443333 788899999999999999885
Q ss_pred c
Q 026651 212 H 212 (235)
Q Consensus 212 H 212 (235)
-
T Consensus 140 s 140 (238)
T PF01702_consen 140 S 140 (238)
T ss_dssp E
T ss_pred c
Confidence 3
No 296
>PLN02591 tryptophan synthase
Probab=71.16 E-value=27 Score=31.72 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
..+.+.++.||+. +.+-+++-.|.-+.|+++++.+.|.|-
T Consensus 175 ~~~~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADG 214 (250)
T PLN02591 175 GRVESLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADG 214 (250)
T ss_pred hhHHHHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCE
Confidence 5677778888874 256778888888899999999998764
No 297
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=71.06 E-value=37 Score=32.06 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=56.1
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
..++.++.+++|+...++|++++=+.... ..+.+ .+.++.|++..+...+ +.....+.+.++.+.++|++
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~---~~~~~----~e~i~~i~~~~~~~~i---~~~~r~~~~di~~a~~~g~~ 87 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVGIPA---MGEEE----RAVIRAIVALGLPARL---MAWCRARDADIEAAARCGVD 87 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCC---CCHHH----HHHHHHHHHcCCCcEE---EEEcCCCHHHHHHHHcCCcC
Confidence 36899999999999999999986665332 22322 3456677665554433 33456789999999999999
Q ss_pred eeccCccccc
Q 026651 209 VFAHNIETVK 218 (235)
Q Consensus 209 ~ynHNLETs~ 218 (235)
.++==+=+++
T Consensus 88 ~i~i~~~~Sd 97 (365)
T TIGR02660 88 AVHISIPVSD 97 (365)
T ss_pred EEEEEEccCH
Confidence 8765544443
No 298
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=70.65 E-value=76 Score=30.59 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=68.9
Q ss_pred eeec-CC-CCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHcCC-cEEEEEeecCCCCCCCchHHHHHHHHHHHhh-C
Q 026651 106 IMLL-GD-TCTRGCRFCAVKTSRNP-APPDPMEPENTAKAIASWGV-DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ-K 180 (235)
Q Consensus 106 ~mIl-G~-~CtedC~FCAQSt~~~p-~~ld~eE~~~~A~aa~~~Gl-~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~-~ 180 (235)
+|+. .+ .|.-||.||-+...... ..++.+.+.+.-+...+... +.+-|| .-+..+.=. ...|-+.+..+.++ .
T Consensus 9 ~~~kpt~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~-w~GGEPlL~-~~~f~~~~~~l~~k~~ 86 (378)
T COG0641 9 VMAKPTGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFT-WQGGEPLLA-GLDFYRKAVALQQKYA 86 (378)
T ss_pred hhcCcccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEE-EECCccccc-hHHHHHHHHHHHHHHh
Confidence 4444 44 49999999999943321 24788888777777666654 442222 222211111 23444444444333 2
Q ss_pred CCceEE--EeecCCCCCHHHHHHHHhcCCCeeccCcccccccccccc
Q 026651 181 PDIMVE--CLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVR 225 (235)
Q Consensus 181 p~~~ie--vl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rlfp~Vc 225 (235)
.+.++. +-+..=+++++-++.|++.|+ .+--=|+-.+.+-.+-|
T Consensus 87 ~~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R 132 (378)
T COG0641 87 NGKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYR 132 (378)
T ss_pred cCCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccc
Confidence 233333 556666679999999999998 77666666666655555
No 299
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=70.49 E-value=32 Score=30.12 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=51.6
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~-~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
..++++..++++++.+.|++..=||.-. + ...+.|+.|++++|. +.|+.= -.++.++++..+++|.+
T Consensus 18 ~~~~~~~~~~~~a~~~gGi~~iEvt~~~----~-----~~~~~i~~l~~~~~~~~~iGaG---TV~~~~~~~~a~~aGA~ 85 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPLNS----P-----DPFDSIAALVKALGDRALIGAG---TVLSPEQVDRLADAGGR 85 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCC----c-----cHHHHHHHHHHHcCCCcEEeEE---ecCCHHHHHHHHHcCCC
Confidence 3678999999999999999988787422 1 123478888887763 333321 24579999999999998
Q ss_pred eec
Q 026651 209 VFA 211 (235)
Q Consensus 209 ~yn 211 (235)
-++
T Consensus 86 fiv 88 (206)
T PRK09140 86 LIV 88 (206)
T ss_pred EEE
Confidence 776
No 300
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=70.01 E-value=23 Score=32.43 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=41.1
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 140 A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
|..+.+.|++|+.+--. .. +.+.+.++.+++..|. +-+.++-|. +.+.+..++++|+|.+
T Consensus 196 a~~A~~~gaD~I~ld~~-----~p---~~l~~~~~~~~~~~~~--i~i~AsGGI-~~~ni~~~~~~Gvd~I 255 (272)
T cd01573 196 ALAAAEAGADILQLDKF-----SP---EELAELVPKLRSLAPP--VLLAAAGGI-NIENAAAYAAAGADIL 255 (272)
T ss_pred HHHHHHcCCCEEEECCC-----CH---HHHHHHHHHHhccCCC--ceEEEECCC-CHHHHHHHHHcCCcEE
Confidence 44455789998877422 22 2345666667665554 455666665 9999999999999987
No 301
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=69.85 E-value=22 Score=33.19 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=53.8
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCC-CCC----CchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPD----GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rdd-L~D----~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
..+.+|..+.++..++.|++|+-|+.+.... .+. ..-..+...+++||+.. ++=|.+..++-+.+.++.+++
T Consensus 220 g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i~~~~~a~~~i~ 296 (353)
T cd02930 220 GSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV---DIPVIASNRINTPEVAERLLA 296 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC---CCCEEEcCCCCCHHHHHHHHH
Confidence 3678899999999999999998887653110 111 11224566778888754 455677777778999999888
Q ss_pred cC-CCee
Q 026651 205 SG-LDVF 210 (235)
Q Consensus 205 AG-~d~y 210 (235)
.| +|.+
T Consensus 297 ~g~~D~V 303 (353)
T cd02930 297 DGDADMV 303 (353)
T ss_pred CCCCChh
Confidence 76 5543
No 302
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=69.75 E-value=34 Score=31.27 Aligned_cols=40 Identities=5% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.++.+.++.||+.. .+=+++-.|.-+.|++++++++|.|.
T Consensus 188 ~~~~~~i~~ir~~t---~~Pi~vGFGI~~~e~~~~~~~~GADG 227 (263)
T CHL00200 188 KKLKKLIETIKKMT---NKPIILGFGISTSEQIKQIKGWNING 227 (263)
T ss_pred HHHHHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHhcCCCE
Confidence 66788888888743 44566777777799999999998874
No 303
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=69.62 E-value=32 Score=29.63 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
+++.+..+..+++|++-++|.. ...++.+|+..|+..|.+=.+...-+.++++.+.+-|++++-=-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~--------------~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls 67 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN--------------PGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLS 67 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC--------------HHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEEC
Confidence 5677788889999998766642 34667777888888888888888889999999999999876433
No 304
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=69.43 E-value=25 Score=29.85 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 140 AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 140 A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
++.+.+.|++|+-+.... .. -.+.++.+++..|. +-+++.-|. +.+.+..++++|++.+.
T Consensus 110 ~~~A~~~Gad~i~~~p~~-----~~----g~~~~~~l~~~~~~--~p~~a~GGI-~~~n~~~~~~~G~~~v~ 169 (190)
T cd00452 110 IMQALELGADIVKLFPAE-----AV----GPAYIKALKGPFPQ--VRFMPTGGV-SLDNAAEWLAAGVVAVG 169 (190)
T ss_pred HHHHHHCCCCEEEEcCCc-----cc----CHHHHHHHHhhCCC--CeEEEeCCC-CHHHHHHHHHCCCEEEE
Confidence 455678999998874321 11 24567777776664 566666666 99999999999988754
No 305
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=68.94 E-value=28 Score=31.31 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=51.2
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEe---ecCCCCCC---------Cch------HHHHHHHHHHHhhCCCceEEEeecCC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTS---VDRDDIPD---------GGS------GHFARTVKAMKKQKPDIMVECLTSDF 192 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTS---g~RddL~D---------~ga------~~~a~~Ir~Ik~~~p~~~ievl~sdg 192 (235)
.+.++..+.|+.+.+.|++.++++. +...|+.. ++. ....+.++.|++.. .+-+.+.-|
T Consensus 163 ~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~---~ipii~~GG 239 (296)
T cd04740 163 PNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV---EIPIIGVGG 239 (296)
T ss_pred CCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc---CCCEEEECC
Confidence 3456788999999999999766532 11111110 111 12346677777653 467888888
Q ss_pred CCCHHHHHHHHhcCCCee
Q 026651 193 RGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 193 ~l~~e~l~~L~eAG~d~y 210 (235)
.-+.+.+.+..++|.|.+
T Consensus 240 I~~~~da~~~l~~GAd~V 257 (296)
T cd04740 240 IASGEDALEFLMAGASAV 257 (296)
T ss_pred CCCHHHHHHHHHcCCCEE
Confidence 889999999889998754
No 306
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=68.68 E-value=23 Score=32.13 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=51.7
Q ss_pred eeecCCCCCCCCCCcccC-CCCCCCCCCchhHHHHHH-HHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCc
Q 026651 106 IMLLGDTCTRGCRFCAVK-TSRNPAPPDPMEPENTAK-AIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (235)
Q Consensus 106 ~mIlG~~CtedC~FCAQS-t~~~p~~ld~eE~~~~A~-aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~ 183 (235)
.+|++..++ +.. +...|.+++.+|+...+. +.+=+|.+++-+=.|.+- .+ .+-+.+.+.++...
T Consensus 116 Yivi~~g~~------v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa---~~---~v~~~v~~~~~~~~-- 181 (230)
T PF01884_consen 116 YIVINPGSK------VARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEAGSGA---YG---PVPEEVIAAVKKLS-- 181 (230)
T ss_dssp EEEESTTSH------HHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE--TTS---SS----HHHHHHHHHHHSS--
T ss_pred EEEECCCCc------eEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCC---CC---CccHHHHHHHHhcC--
Confidence 566665554 333 333356788877776654 677788998777544331 12 33233333444443
Q ss_pred eEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 184 MVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 184 ~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.+-+...-|+-+.|+++.+.+||.|.+
T Consensus 182 ~~~LivGGGIrs~e~A~~~~~aGAD~I 208 (230)
T PF01884_consen 182 DIPLIVGGGIRSPEQAREMAEAGADTI 208 (230)
T ss_dssp SSEEEEESS--SHHHHHHHHCTTSSEE
T ss_pred CccEEEeCCcCCHHHHHHHHHCCCCEE
Confidence 457899999999999999999999875
No 307
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=68.66 E-value=26 Score=31.68 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=53.9
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHH--HHHHHHHHhhC-CCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHF--ARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~--a~~Ir~Ik~~~-p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
..+.++..++|+...+.|++++=|.......-...+...+ .+.+++|.+.. +++.+-.++--+..+.+.++...+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 5889999999999999999977665332210001111111 23455554433 35778888777777888999999999
Q ss_pred CCeec
Q 026651 207 LDVFA 211 (235)
Q Consensus 207 ~d~yn 211 (235)
++.++
T Consensus 96 v~~ir 100 (266)
T cd07944 96 VDMIR 100 (266)
T ss_pred cCEEE
Confidence 98743
No 308
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=68.58 E-value=33 Score=32.73 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=52.0
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEee--cCCCC---CCCchHHHHHHHHHHHhhCCCceE---------------EEee
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSV--DRDDI---PDGGSGHFARTVKAMKKQKPDIMV---------------ECLT 189 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg--~RddL---~D~ga~~~a~~Ir~Ik~~~p~~~i---------------evl~ 189 (235)
-+..+.+.+.++.+.++|++-+++--+ .+|.. ....-.-+.++|+.||+..|++.| +++-
T Consensus 57 r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~ 136 (322)
T PRK13384 57 RLPESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLH 136 (322)
T ss_pred eECHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeecc
Confidence 367799999999999999985554332 23211 011224678999999999997542 1221
Q ss_pred cCCCCCHHHHHHH-------HhcCCCeec
Q 026651 190 SDFRGDLRAVETL-------VHSGLDVFA 211 (235)
Q Consensus 190 sdg~l~~e~l~~L-------~eAG~d~yn 211 (235)
.....+.+.++.| ++||.|+++
T Consensus 137 ~g~i~ND~Tl~~L~~~Als~A~AGADiVA 165 (322)
T PRK13384 137 NDEVDNDATVENLVKQSVTAAKAGADMLA 165 (322)
T ss_pred CCcCccHHHHHHHHHHHHHHHHcCCCeEe
Confidence 1123456666655 578888764
No 309
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=68.37 E-value=37 Score=32.34 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=38.0
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeec--CCCC---CCCchHHHHHHHHHHHhhCCCce
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVD--RDDI---PDGGSGHFARTVKAMKKQKPDIM 184 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~--RddL---~D~ga~~~a~~Ir~Ik~~~p~~~ 184 (235)
-+..+...+.++.+.++|++-+++--+. +|.. ....-.-+.++|+.||+..|++.
T Consensus 47 r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~ 106 (314)
T cd00384 47 RLSVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGIVQRAIRAIKEAVPELV 106 (314)
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCChHHHHHHHHHHhCCCcE
Confidence 3678999999999999999855554331 2211 00112357999999999999754
No 310
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=68.01 E-value=61 Score=30.86 Aligned_cols=85 Identities=21% Similarity=0.125 Sum_probs=51.9
Q ss_pred CCCCCchhHHHH-------HHHHHHcCCcEEEEEe---e------------cCCCCC----CCchHHHHHHHHHHHhhCC
Q 026651 128 PAPPDPMEPENT-------AKAIASWGVDYIVLTS---V------------DRDDIP----DGGSGHFARTVKAMKKQKP 181 (235)
Q Consensus 128 p~~ld~eE~~~~-------A~aa~~~Gl~y~VVTS---g------------~RddL~----D~ga~~~a~~Ir~Ik~~~p 181 (235)
|..++.+||.++ |+.|++.|.+-+=|-. | +|.|-- +.-+..+.++|++||+..+
T Consensus 137 p~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g 216 (382)
T cd02931 137 CRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCG 216 (382)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcC
Confidence 445777777755 8888888987554433 2 333311 1126778899999998764
Q ss_pred -CceEEEeecC-------------------CCCCH----HHHHHHHhcCCCeecc
Q 026651 182 -DIMVECLTSD-------------------FRGDL----RAVETLVHSGLDVFAH 212 (235)
Q Consensus 182 -~~~ievl~sd-------------------g~l~~----e~l~~L~eAG~d~ynH 212 (235)
+..|.+-.+. +-++. +-++.|.++|+|.+|=
T Consensus 217 ~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~v 271 (382)
T cd02931 217 EDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDV 271 (382)
T ss_pred CCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 4344543331 11222 3457788899998853
No 311
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=67.86 E-value=22 Score=33.90 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=51.9
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCC----CC--CchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDI----PD--GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL----~D--~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
++.+|..++|+..++.|++|+-|+.|..... +. .+-..+...++.||+.. ++=|.+.-++-+.+.++++.+
T Consensus 249 ~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~~~~~l~ 325 (382)
T cd02931 249 RDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV---DVPVIMAGRMEDPELASEAIN 325 (382)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHH
Confidence 5678999999999999999999987764211 11 11123345566677653 345677777778898888888
Q ss_pred cC-CCe
Q 026651 205 SG-LDV 209 (235)
Q Consensus 205 AG-~d~ 209 (235)
.| .|-
T Consensus 326 ~g~~D~ 331 (382)
T cd02931 326 EGIADM 331 (382)
T ss_pred cCCCCe
Confidence 66 443
No 312
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=67.30 E-value=36 Score=30.51 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=48.8
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 139 TAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 139 ~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+|..|.+.|+.|+=.=-||-||..-.+...+.+..+.++...++ .++|+--+. +.+++-.+..+|.+.+-
T Consensus 118 Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~--tkILaAS~r-~~~~v~~a~~~G~d~vT 187 (222)
T PRK12656 118 QGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSD--SKILAASFK-NVAQVNKAFALGAQAVT 187 (222)
T ss_pred HHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCC--CEEEEEecC-CHHHHHHHHHcCCCEEe
Confidence 34556668998866666776666445566677777777665554 477766665 78888899999998763
No 313
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=67.29 E-value=17 Score=34.75 Aligned_cols=34 Identities=12% Similarity=-0.076 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHH
Q 026651 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVE 200 (235)
Q Consensus 166 a~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~ 200 (235)
.+.+.+.++++.+.-. ..|.++-..|.+++.++.
T Consensus 196 ~~~l~~~~~~~~~~Ga-d~I~l~DT~G~a~P~~v~ 229 (347)
T PLN02746 196 PSKVAYVAKELYDMGC-YEISLGDTIGVGTPGTVV 229 (347)
T ss_pred HHHHHHHHHHHHHcCC-CEEEecCCcCCcCHHHHH
Confidence 4455555555543321 234444555555554443
No 314
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=67.09 E-value=42 Score=28.91 Aligned_cols=66 Identities=27% Similarity=0.355 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+.++.+.+.|++++++-..... .+++ +.+.+.++.+++. ++ +.++++ ..+.+.++++.++|+|.+.
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~-~p~~--~~~~~~i~~~~~~-~~--i~vi~~--v~t~ee~~~a~~~G~d~i~ 144 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRP-RPDG--ETLAELVKRIKEY-PG--QLLMAD--CSTLEEGLAAQKLGFDFIG 144 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-CCCC--CCHHHHHHHHHhC-CC--CeEEEe--CCCHHHHHHHHHcCCCEEE
Confidence 4578889999996665433211 1221 3445667777764 43 334432 3378889999999999883
No 315
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=66.90 E-value=20 Score=29.13 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCcEEEEEeecCC----CC-CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 138 NTAKAIASWGVDYIVLTSVDRD----DI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~Rd----dL-~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
..++.+.+.|++|+++..+.-. .. ...+ .+.++.+++. + .+.+++- |-.+.+.++.++++|++.+
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~--~~pv~a~-GGi~~~~i~~~~~~Ga~~i 175 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLG----LELLREIAEL-V--EIPVVAI-GGITPENAAEVLAAGADGV 175 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCC----HHHHHHHHHh-C--CCCEEEE-CCCCHHHHHHHHHcCCCEE
Confidence 3456677889999888655211 11 1222 3344555543 2 2344444 4447899999999999876
No 316
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=66.85 E-value=45 Score=28.37 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeec------CCC---CCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC----HH
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVD------RDD---IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LR 197 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~------Rdd---L~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~----~e 197 (235)
-++++..+.|+.+++.|.+-+=|-.+- +|. .-....+.+.++|++|++..+ ..+-+=+..|... .+
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~ 142 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLE 142 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHH
Confidence 467899999999999998755443221 110 011246788999999998754 2333333333322 34
Q ss_pred HHHHHHhcCCCeecc
Q 026651 198 AVETLVHSGLDVFAH 212 (235)
Q Consensus 198 ~l~~L~eAG~d~ynH 212 (235)
.++.|.++|++.++-
T Consensus 143 ~~~~l~~~Gvd~i~v 157 (231)
T cd02801 143 LAKALEDAGASALTV 157 (231)
T ss_pred HHHHHHHhCCCEEEE
Confidence 567888999988864
No 317
>PRK13753 dihydropteroate synthase; Provisional
Probab=66.73 E-value=36 Score=31.66 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=52.8
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE-E-eecCCCC----CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL-T-SVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV 203 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV-T-Sg~RddL----~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~ 203 (235)
.++++.+++.|+...+.|++.+=| . |. |++. +++|++++..+|++|++...-++| =..+.+-++.-.
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeST-rPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISI------DT~~~~va~~al 93 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAAS-HPDARPVSPADEIRRIAPLLDALSDQMHRVSI------DSFQPETQRYAL 93 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCC-CCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEE------ECCCHHHHHHHH
Confidence 578999999999999999996555 2 22 2221 224788888999999875322333 233677777777
Q ss_pred hcCCCeecc
Q 026651 204 HSGLDVFAH 212 (235)
Q Consensus 204 eAG~d~ynH 212 (235)
++|++.+|-
T Consensus 94 ~aGadiIND 102 (279)
T PRK13753 94 KRGVGYLND 102 (279)
T ss_pred HcCCCEEEe
Confidence 888887764
No 318
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=66.63 E-value=17 Score=32.02 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=58.2
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.....|.++|+.-.+.|++...|.--++ .. .+-..-.+.|++|.+..+ +.+-+.-|.-+.|+++++.++|++++
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLda--a~-~g~~~n~~~i~~i~~~~~---~~i~vgGGIrs~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDA--AK-EGRGSNLELIKEIAKETG---IPIQVGGGIRSIEDAERLLDAGADRV 99 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHH--HC-CTHHHHHHHHHHHHHHSS---SEEEEESSE-SHHHHHHHHHTT-SEE
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccC--cc-cCchhHHHHHHHHHhcCC---ccEEEeCccCcHHHHHHHHHhCCCEE
Confidence 4456788899999999999555543333 11 233455688888887653 67777789999999999999999998
Q ss_pred ccCcccccc
Q 026651 211 AHNIETVKR 219 (235)
Q Consensus 211 nHNLETs~r 219 (235)
-=|-++.++
T Consensus 100 vigt~~~~~ 108 (229)
T PF00977_consen 100 VIGTEALED 108 (229)
T ss_dssp EESHHHHHC
T ss_pred EeChHHhhc
Confidence 777666543
No 319
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.33 E-value=63 Score=28.72 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=53.8
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
..++.++..++++...+.|++++=++... +.+.+ .+.+++|++..+++.+-.+ ...+.+.++..+++|++
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~---~~~~~----~e~~~~l~~~~~~~~~~~~---~r~~~~~v~~a~~~g~~ 84 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVGIPA---MGEEE----REAIRAIVALGLPARLIVW---CRAVKEDIEAALRCGVT 84 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCC---CCHHH----HHHHHHHHhcCCCCEEEEe---ccCCHHHHHHHHhCCcC
Confidence 36899999999999999999987775432 22222 3566777765555554433 44678999999999999
Q ss_pred eeccCc
Q 026651 209 VFAHNI 214 (235)
Q Consensus 209 ~ynHNL 214 (235)
.++==+
T Consensus 85 ~i~i~~ 90 (259)
T cd07939 85 AVHISI 90 (259)
T ss_pred EEEEEE
Confidence 865433
No 320
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=65.56 E-value=31 Score=29.55 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCch-HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGS-GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga-~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+.++.+.+.|++|.++.+....... ... ....+.++++++.. .+-+++.-|.-+.+.+.++.++|++-+
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~-~~~~~~~~~~i~~i~~~~---~~Pvi~~GGI~~~~~v~~~l~~GadgV 182 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHR-GTFDIGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAALALGADGV 182 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCC-CccccCHHHHHHHHHHHh---CCCEEEECCCCCHHHHHHHHHcCCcEE
Confidence 4456677789998777553211110 111 12345677777643 356788888878799999889998743
No 321
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=64.92 E-value=28 Score=31.82 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 133 PMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.-.|.+.|+..++.|+. .+|+|=++. -.|..+. ++.+++. +++=+|..||.+++.|+..-+.+|.|.+
T Consensus 60 ~~d~~~~A~~y~~~GA~aISVlTe~~~---F~Gs~~~----l~~v~~~---v~~PvL~KDFIid~~QI~ea~~~GADav 128 (247)
T PRK13957 60 DYHPVQIAKTYETLGASAISVLTDQSY---FGGSLED----LKSVSSE---LKIPVLRKDFILDEIQIREARAFGASAI 128 (247)
T ss_pred CCCHHHHHHHHHHCCCcEEEEEcCCCc---CCCCHHH----HHHHHHh---cCCCEEeccccCCHHHHHHHHHcCCCEE
Confidence 34677889999999987 788887754 2333333 3334442 2356899999999999999999999876
No 322
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=64.84 E-value=47 Score=31.45 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=49.7
Q ss_pred CCchhHHHHHHHHHHcC--CcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 131 PDPMEPENTAKAIASWG--VDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~G--l~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
..+++..++++-+++ | ++++++-+- .+-...+.+.|+.||+..|. ..+++. ..++.+.++.|.++|+|
T Consensus 91 ~t~e~~~r~~~lv~a-~~~~d~i~~D~a------hg~s~~~~~~i~~i~~~~p~--~~vi~G-nV~t~e~a~~l~~aGad 160 (321)
T TIGR01306 91 VKACEYEFVTQLAEE-ALTPEYITIDIA------HGHSNSVINMIKHIKTHLPD--SFVIAG-NVGTPEAVRELENAGAD 160 (321)
T ss_pred CCHHHHHHHHHHHhc-CCCCCEEEEeCc------cCchHHHHHHHHHHHHhCCC--CEEEEe-cCCCHHHHHHHHHcCcC
Confidence 445666665555544 6 477777543 44467999999999998874 344443 24699999999999999
Q ss_pred ee
Q 026651 209 VF 210 (235)
Q Consensus 209 ~y 210 (235)
.+
T Consensus 161 ~I 162 (321)
T TIGR01306 161 AT 162 (321)
T ss_pred EE
Confidence 87
No 323
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=64.61 E-value=21 Score=29.88 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=42.5
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+.+..+.+..+ +...|++|+++.-+... ...+.....+.++.+++. + .+.+++.-|. +.+.++.++++|++.+
T Consensus 111 ~~~~t~~e~~~-~~~~~~d~v~~~~~~~~--~~~~~~~~~~~i~~~~~~-~--~~~i~~~GGI-~~~~i~~~~~~Gad~v 183 (202)
T cd04726 111 IGVEDPEKRAK-LLKLGVDIVILHRGIDA--QAAGGWWPEDDLKKVKKL-L--GVKVAVAGGI-TPDTLPEFKKAGADIV 183 (202)
T ss_pred eCCCCHHHHHH-HHHCCCCEEEEcCcccc--cccCCCCCHHHHHHHHhh-c--CCCEEEECCc-CHHHHHHHHhcCCCEE
Confidence 34444544444 66678998777432211 111112345666666653 3 2344554444 8999999999999865
No 324
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=64.52 E-value=87 Score=28.39 Aligned_cols=84 Identities=21% Similarity=0.226 Sum_probs=50.7
Q ss_pred CCCCCchhHHHH-------HHHHHHcCCcEEEEEee--------------cCCCCCC----CchHHHHHHHHHHHhhC-C
Q 026651 128 PAPPDPMEPENT-------AKAIASWGVDYIVLTSV--------------DRDDIPD----GGSGHFARTVKAMKKQK-P 181 (235)
Q Consensus 128 p~~ld~eE~~~~-------A~aa~~~Gl~y~VVTSg--------------~RddL~D----~ga~~~a~~Ir~Ik~~~-p 181 (235)
|..++.+|+.++ |+.+++.|.+-+=|-.+ +|.|--. .-...+.++|++||+.. +
T Consensus 128 ~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~ 207 (327)
T cd02803 128 PREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGP 207 (327)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 446777777654 88888889874333222 3332111 12455689999999875 4
Q ss_pred CceEEEeecCC-----CCCHH----HHHHHHhcCCCeec
Q 026651 182 DIMVECLTSDF-----RGDLR----AVETLVHSGLDVFA 211 (235)
Q Consensus 182 ~~~ievl~sdg-----~l~~e----~l~~L~eAG~d~yn 211 (235)
+..|.+=++.. ..+.+ -++.|.++|+|.++
T Consensus 208 d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 208 DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALH 246 (327)
T ss_pred CceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 44455444421 12333 36788999999886
No 325
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.39 E-value=31 Score=31.88 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
.+.|+.+.+.|++|+.+ +. + +.+.+.++++.++ +.+ -+.++-| .+.+.+..++++|+|.+.
T Consensus 199 leea~eA~~~gaD~I~L---D~--~---~~e~l~~~v~~~~---~~i--~leAsGG-It~~ni~~~a~tGvD~Is 259 (277)
T PRK05742 199 LDELRQALAAGADIVML---DE--L---SLDDMREAVRLTA---GRA--KLEASGG-INESTLRVIAETGVDYIS 259 (277)
T ss_pred HHHHHHHHHcCCCEEEE---CC--C---CHHHHHHHHHHhC---CCC--cEEEECC-CCHHHHHHHHHcCCCEEE
Confidence 44566777889999866 11 3 3456666665543 333 3445544 499999999999999874
No 326
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=64.36 E-value=27 Score=31.49 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
..+.+.|+.+|+.. .+.+++-.|.-+.|++++++++|.|.+
T Consensus 184 ~~~~~~i~~lr~~~---~~pi~vgfGI~~~e~~~~~~~~GADgv 224 (256)
T TIGR00262 184 SALNELVKRLKAYS---AKPVLVGFGISKPEQVKQAIDAGADGV 224 (256)
T ss_pred hhHHHHHHHHHhhc---CCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 45788888888754 235677666667999999999999865
No 327
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=64.30 E-value=38 Score=34.02 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=53.9
Q ss_pred CCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCC-CceEEEee--cCCCCCHHHHHHHHhc
Q 026651 131 PDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLT--SDFRGDLRAVETLVHS 205 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~~ievl~--sdg~l~~e~l~~L~eA 205 (235)
.+++...+.|+.+.++|++.+.+ |+|- +.. ..+.+.|++||+..| ++.|++-+ ..|+...- .-.-.+|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDtaGl---l~P---~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An-~laAieA 224 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMAAL---LKP---QPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVS-LMKAIEA 224 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccC---CCH---HHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHH-HHHHHHc
Confidence 47899999999999999985444 6664 222 478888999998875 65555554 34443333 3355789
Q ss_pred CCCeeccCccc
Q 026651 206 GLDVFAHNIET 216 (235)
Q Consensus 206 G~d~ynHNLET 216 (235)
|+++++--+.-
T Consensus 225 Gad~vDtai~G 235 (499)
T PRK12330 225 GVDVVDTAISS 235 (499)
T ss_pred CCCEEEeeccc
Confidence 99988755443
No 328
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.83 E-value=40 Score=28.88 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=50.9
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
..++++..+.++++.+.|++.+-+|.-+- +.. +.++.+++..|.+.+..-+ .+..++++..+++|.+-
T Consensus 20 ~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~------~~~---e~~~~~~~~~~~~~~g~gt---vl~~d~~~~A~~~gAdg 87 (187)
T PRK07455 20 APDLELGLQMAEAVAAGGMRLIEITWNSD------QPA---ELISQLREKLPECIIGTGT---ILTLEDLEEAIAAGAQF 87 (187)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCC------CHH---HHHHHHHHhCCCcEEeEEE---EEcHHHHHHHHHcCCCE
Confidence 36889999999999999999988885432 123 4444555555544433211 23569999999999998
Q ss_pred e---ccCcc
Q 026651 210 F---AHNIE 215 (235)
Q Consensus 210 y---nHNLE 215 (235)
+ |-+.|
T Consensus 88 v~~p~~~~~ 96 (187)
T PRK07455 88 CFTPHVDPE 96 (187)
T ss_pred EECCCCCHH
Confidence 8 66543
No 329
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=63.80 E-value=49 Score=26.58 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhc
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
+.-....+.|.+.++|-+.-= .+..+.+.+-+.+++.+ .|...|.+.-|++. +.+..+.+++|
T Consensus 60 eaL~~l~~~G~~~V~V~Pl~l--~~G~e~~di~~~v~~~~--~~~~~i~~g~pLl~-~~~d~~~v~~a 122 (127)
T cd03412 60 EALAKLAADGYTEVIVQSLHI--IPGEEYEKLKREVDAFK--KGFKKIKLGRPLLY-SPEDYEEVAAA 122 (127)
T ss_pred HHHHHHHHCCCCEEEEEeCee--ECcHHHHHHHHHHHHHh--CCCceEEEccCCCC-CHHHHHHHHHH
Confidence 334467778999999988752 24445566666666655 57778898888775 56666666654
No 330
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=63.60 E-value=18 Score=35.81 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=51.9
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCC-----ceEEEeecCCCCCHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPD-----IMVECLTSDFRGDLRAVETL 202 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~-----~~ievl~sdg~l~~e~l~~L 202 (235)
..|++...++++++.+.|++.+.+ |-|.. .| ..+.+.|+.|++..|. +.++.---.|+.....+..+
T Consensus 142 r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~--~P----~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv 215 (494)
T TIGR00973 142 RTEIPFLARIVEAAINAGATTINIPDTVGYA--LP----AEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAV 215 (494)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CH----HHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHH
Confidence 367899999999999999985444 66643 34 4788888888877653 33444444566566666655
Q ss_pred HhcCCCeec
Q 026651 203 VHSGLDVFA 211 (235)
Q Consensus 203 ~eAG~d~yn 211 (235)
+||+++++
T Consensus 216 -~aGa~~vd 223 (494)
T TIGR00973 216 -QNGARQVE 223 (494)
T ss_pred -HhCCCEEE
Confidence 68988875
No 331
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=63.47 E-value=44 Score=30.49 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+.|+.+.+.|++|+.+-. +. .+.+.+.++.+++. +-+.++-| .+.+.+..++++|+|.+.
T Consensus 189 eea~~A~~~gaDyI~ld~-----~~---~e~lk~~v~~~~~~-----ipi~AsGG-I~~~ni~~~a~~Gvd~Is 248 (265)
T TIGR00078 189 EEAEEAAEAGADIIMLDN-----MK---PEEIKEAVQLLKGR-----VLLEASGG-ITLDNLEEYAETGVDVIS 248 (265)
T ss_pred HHHHHHHHcCCCEEEECC-----CC---HHHHHHHHHHhcCC-----CcEEEECC-CCHHHHHHHHHcCCCEEE
Confidence 457777889999987722 22 34555555555432 23444444 599999999999999875
No 332
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.29 E-value=91 Score=29.73 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=52.1
Q ss_pred CCCCCchhHHHH-------HHHHHHcCCcEEEEEeec--------------CCCCCC----CchHHHHHHHHHHHhhC-C
Q 026651 128 PAPPDPMEPENT-------AKAIASWGVDYIVLTSVD--------------RDDIPD----GGSGHFARTVKAMKKQK-P 181 (235)
Q Consensus 128 p~~ld~eE~~~~-------A~aa~~~Gl~y~VVTSg~--------------RddL~D----~ga~~~a~~Ir~Ik~~~-p 181 (235)
|..++.+|+.++ |+.+++.|.+.+=|-.+. |.|--- .-+.-+.++|++||+.. |
T Consensus 131 p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~ 210 (361)
T cd04747 131 GREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGP 210 (361)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 446777777644 888888898755554333 332111 12567889999999975 4
Q ss_pred CceEEEeecC-----C----CCCHH----HHHHHHhcCCCeecc
Q 026651 182 DIMVECLTSD-----F----RGDLR----AVETLVHSGLDVFAH 212 (235)
Q Consensus 182 ~~~ievl~sd-----g----~l~~e----~l~~L~eAG~d~ynH 212 (235)
+.-|.+=++. + -.+.+ -++.|.++|+|.+|=
T Consensus 211 d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 211 DFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred CCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 5455654442 1 13433 234568899998754
No 333
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=63.18 E-value=37 Score=31.47 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCcEEEEE--eecCCCCCCCchHHHH-----HHHHHHHhhCCCc-eEEEeecCCCCCHHHHHHHHhcC
Q 026651 135 EPENTAKAIASWGVDYIVLT--SVDRDDIPDGGSGHFA-----RTVKAMKKQKPDI-MVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVT--Sg~RddL~D~ga~~~a-----~~Ir~Ik~~~p~~-~ievl~sdg~l~~e~l~~L~eAG 206 (235)
-..+.+++..+.|++.+.+- ++. -++.+.+++|+ +.++.|++..|+. -+..|. +....++.+++.|
T Consensus 187 ~~~~~~~~~~eaGad~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg----~~~~~~~~~~~~~ 260 (346)
T PRK00115 187 ATIAYLNAQIEAGAQAVQIFDSWAG--ALSPADYREFVLPYMKRIVAELKREHPDVPVILFGK----GAGELLEAMAETG 260 (346)
T ss_pred HHHHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcC----CcHHHHHHHHhcC
Confidence 34555777778899854432 333 37888888775 5777787764432 345453 3456789999999
Q ss_pred CCee----ccCcccccccccc
Q 026651 207 LDVF----AHNIETVKRLQRI 223 (235)
Q Consensus 207 ~d~y----nHNLETs~rlfp~ 223 (235)
++.+ +.+|+.+++.++.
T Consensus 261 ~~~is~d~~~dl~~~k~~~g~ 281 (346)
T PRK00115 261 ADVVGLDWTVDLAEARRRVGD 281 (346)
T ss_pred CCEEeeCCCCCHHHHHHHcCC
Confidence 9998 6778777777775
No 334
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=63.16 E-value=46 Score=31.57 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCC--cEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 137 ENTAKAIASWGV--DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 137 ~~~A~aa~~~Gl--~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.+.+.+..+.|+ +..+|=+- ++....+.+.|+.||+..|+. .+.+-+ ..+.|.++.|.++|+|.+
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a------~gh~~~~~e~I~~ir~~~p~~--~vi~g~-V~t~e~a~~l~~aGad~i 165 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIA------HGHSDSVINMIQHIKKHLPET--FVIAGN-VGTPEAVRELENAGADAT 165 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECC------CCchHHHHHHHHHHHhhCCCC--eEEEEe-cCCHHHHHHHHHcCcCEE
Confidence 345556666665 87666322 244678899999999998854 333311 338999999999999986
No 335
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=62.97 E-value=29 Score=30.73 Aligned_cols=85 Identities=11% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCchhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHH----HHhc
Q 026651 131 PDPMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVET----LVHS 205 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~----L~eA 205 (235)
...+.-...++.+.++|++ .-+|--... +.++..+.+.+-|++|++...+..+.+...-+.++.+++.+ ..++
T Consensus 67 ~~~~~K~~E~~~Av~~GAdEiDvv~n~g~--l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~ea 144 (211)
T TIGR00126 67 STTDVKLYETKEAIKYGADEVDMVINIGA--LKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDA 144 (211)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEeecchHh--hhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3444555667888889997 455555444 67788899999999999876556677788888888777654 4567
Q ss_pred CCCeeccCcccccccc
Q 026651 206 GLDVFAHNIETVKRLQ 221 (235)
Q Consensus 206 G~d~ynHNLETs~rlf 221 (235)
|+|. +-|+-.|.
T Consensus 145 GADf----vKTsTGf~ 156 (211)
T TIGR00126 145 GADF----VKTSTGFG 156 (211)
T ss_pred CCCE----EEeCCCCC
Confidence 7764 45655544
No 336
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=62.88 E-value=41 Score=33.95 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=61.1
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCH----------
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL---------- 196 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~---------- 196 (235)
.+.+...|++.|+.-.+.|++..++ -++.+. .+.+-+.+.++|++|.+. +.|-+.+--|.-+.
T Consensus 262 ~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~--~~~~~~~~~~~i~~i~~~---~~ip~~vGGGIr~~~d~~~~~~~~ 336 (538)
T PLN02617 262 EVRNLGKPVELAGQYYKDGADEVAFLNITGFRD--FPLGDLPMLEVLRRASEN---VFVPLTVGGGIRDFTDANGRYYSS 336 (538)
T ss_pred CCCcCCCHHHHHHHHHHcCCCEEEEEECCCCcC--CcccchhHHHHHHHHHhh---CCCCEEEcCCccccccccccccch
Confidence 3677889999999999999984333 222221 122234568888888774 34667777788775
Q ss_pred -HHHHHHHhcCCCeeccCccccc
Q 026651 197 -RAVETLVHSGLDVFAHNIETVK 218 (235)
Q Consensus 197 -e~l~~L~eAG~d~ynHNLETs~ 218 (235)
|++++|.++|+|++.=|=..++
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~ 359 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVY 359 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHh
Confidence 8899999999999988864444
No 337
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=62.70 E-value=35 Score=30.03 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=35.9
Q ss_pred CCCCCCCCCCcccCCCC------CCCCCCchhHHHHHHHHHHcC--CcEEEEEeecCCCCCCCchHHHHHHHHH
Q 026651 110 GDTCTRGCRFCAVKTSR------NPAPPDPMEPENTAKAIASWG--VDYIVLTSVDRDDIPDGGSGHFARTVKA 175 (235)
Q Consensus 110 G~~CtedC~FCAQSt~~------~p~~ld~eE~~~~A~aa~~~G--l~y~VVTSg~RddL~D~ga~~~a~~Ir~ 175 (235)
=+.|+-+|.||...... ...+++.+|+++ .+++++ .+++++|-|.= +--.++..+.+.+++
T Consensus 29 ~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~---~i~~~~~~~~~V~lTGGEP--~~~~~l~~Ll~~l~~ 97 (212)
T COG0602 29 FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILA---DIKSLGYKARGVSLTGGEP--LLQPNLLELLELLKR 97 (212)
T ss_pred cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHH---HHHhcCCCcceEEEeCCcC--CCcccHHHHHHHHHh
Confidence 56899999999965211 123566666665 566654 34788888852 222234444444443
No 338
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=62.59 E-value=42 Score=30.07 Aligned_cols=98 Identities=15% Similarity=0.059 Sum_probs=62.7
Q ss_pred eeecCCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCc
Q 026651 106 IMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDI 183 (235)
Q Consensus 106 ~mIlG~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~ 183 (235)
+=|++|.|-+--+|= + +. ...++ .|...|+.-++.|.+ |++..-+.. +...-.+.|++|.+..
T Consensus 9 IDl~~G~vVrl~~G~--~-~~-~~~y~--~p~~~a~~~~~~g~~~lhivDLd~a~------g~~~n~~~i~~i~~~~--- 73 (243)
T TIGR01919 9 VDVNGGAAVRLQQGA--G-GS-KTYYG--SLESAAKWWEQGGAEWIHLVDLDAAF------GGGNNEMMLEEVVKLL--- 73 (243)
T ss_pred EEEECCEEEEeecCC--C-CC-ceecC--CHHHHHHHHHhCCCeEEEEEECCCCC------CCcchHHHHHHHHHHC---
Confidence 345577766554441 1 01 12222 445677777888887 555543321 1223356788887754
Q ss_pred eEEEeecCCCCCHHHHHHHHhcCCCeeccCccccc
Q 026651 184 MVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVK 218 (235)
Q Consensus 184 ~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~ 218 (235)
.+.+.+.-|.-+.|+++.+.++|++++-=|-++.+
T Consensus 74 ~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 74 VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALE 108 (243)
T ss_pred CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 35667778999999999999999999977766654
No 339
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=62.57 E-value=68 Score=30.13 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=51.0
Q ss_pred CCCCCchhHHHH-------HHHHHHcCCcEEEEEee--------------cCCCCCCC----chHHHHHHHHHHHhhCCC
Q 026651 128 PAPPDPMEPENT-------AKAIASWGVDYIVLTSV--------------DRDDIPDG----GSGHFARTVKAMKKQKPD 182 (235)
Q Consensus 128 p~~ld~eE~~~~-------A~aa~~~Gl~y~VVTSg--------------~RddL~D~----ga~~~a~~Ir~Ik~~~p~ 182 (235)
|..++.+|+.++ |+.+++.|.+-+=|-.+ +|.|---+ -+..+.++|++||+..+.
T Consensus 129 p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~ 208 (337)
T PRK13523 129 PVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDG 208 (337)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445888888755 88888889875555433 34331111 256778999999987521
Q ss_pred -ceEEEeecC----CCCCH---HHHHHHHhcCCCeecc
Q 026651 183 -IMVECLTSD----FRGDL---RAVETLVHSGLDVFAH 212 (235)
Q Consensus 183 -~~ievl~sd----g~l~~---e~l~~L~eAG~d~ynH 212 (235)
+.+.+-..+ |.--+ +-++.|.++|+|-+|=
T Consensus 209 ~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~v 246 (337)
T PRK13523 209 PLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDV 246 (337)
T ss_pred CeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 233333322 33222 3347888899998763
No 340
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=62.52 E-value=23 Score=33.35 Aligned_cols=75 Identities=15% Similarity=0.051 Sum_probs=49.5
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCC-CceEEEeecCCCCCHHHHHHHHhcC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
..|++...+.++++.++|++.+.+ |.|.. .| ..+.+.|+.|++..+ .+.++.---.|+.....+..+ +||
T Consensus 138 r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~--~P----~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~-~aG 210 (365)
T TIGR02660 138 RADPDFLVELAEVAAEAGADRFRFADTVGIL--DP----FSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAV-RAG 210 (365)
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEEcccCCCC--CH----HHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH-HhC
Confidence 357899999999999999985333 66643 34 477888888887643 133444444555555555554 888
Q ss_pred CCeec
Q 026651 207 LDVFA 211 (235)
Q Consensus 207 ~d~yn 211 (235)
+++++
T Consensus 211 a~~vd 215 (365)
T TIGR02660 211 ATHVN 215 (365)
T ss_pred CCEEE
Confidence 88775
No 341
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=62.50 E-value=59 Score=30.81 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCCCCCCCchhHHHH-------HHHHHHcCCcEEEEEeec-------------------CCCCCCCchHHHHHHHHHHHh
Q 026651 125 SRNPAPPDPMEPENT-------AKAIASWGVDYIVLTSVD-------------------RDDIPDGGSGHFARTVKAMKK 178 (235)
Q Consensus 125 ~~~p~~ld~eE~~~~-------A~aa~~~Gl~y~VVTSg~-------------------RddL~D~ga~~~a~~Ir~Ik~ 178 (235)
+..|..++.+|+.++ |+.|++.|.+-+-|-.+. +.++.++ +.-+.++|++||+
T Consensus 143 ~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR-~Rf~~Eiv~aVr~ 221 (362)
T PRK10605 143 TSTPRALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENR-ARLVLEVVDAGIA 221 (362)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHH-HHHHHHHHHHHHH
Q ss_pred hCCCceEEEeec--------CCCCCHHH-----HHHHHhcCCCeec
Q 026651 179 QKPDIMVECLTS--------DFRGDLRA-----VETLVHSGLDVFA 211 (235)
Q Consensus 179 ~~p~~~ievl~s--------dg~l~~e~-----l~~L~eAG~d~yn 211 (235)
..+.--|.+=.| .+-.+.+. ++.|.++|+|-+|
T Consensus 222 ~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~ 267 (362)
T PRK10605 222 EWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLH 267 (362)
T ss_pred HcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEE
No 342
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=62.48 E-value=68 Score=30.07 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=50.2
Q ss_pred CCCCCchhHHHH-------HHHHHHcCCcEEEEEee--------------cCCCCC----CCchHHHHHHHHHHHhhCCC
Q 026651 128 PAPPDPMEPENT-------AKAIASWGVDYIVLTSV--------------DRDDIP----DGGSGHFARTVKAMKKQKPD 182 (235)
Q Consensus 128 p~~ld~eE~~~~-------A~aa~~~Gl~y~VVTSg--------------~RddL~----D~ga~~~a~~Ir~Ik~~~p~ 182 (235)
|..++.+|+.++ |+.+++.|.+.+=|-.+ +|.|-- +.-+..+.++|++||+..+.
T Consensus 139 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~ 218 (338)
T cd02933 139 PRALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGA 218 (338)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCC
Confidence 345777777654 88888899885555322 332210 11367788999999987533
Q ss_pred --ceEEEeecCCC------CCH----HHHHHHHhcCCCeec
Q 026651 183 --IMVECLTSDFR------GDL----RAVETLVHSGLDVFA 211 (235)
Q Consensus 183 --~~ievl~sdg~------l~~----e~l~~L~eAG~d~yn 211 (235)
+.+.+-..++. .+. +-++.|.++|+|.+|
T Consensus 219 d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~ 259 (338)
T cd02933 219 DRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLH 259 (338)
T ss_pred CceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 33333333321 132 345778889998875
No 343
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=62.45 E-value=17 Score=32.23 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=46.8
Q ss_pred HcCCc-EEEEEeecCCC-CCCCchHHHHHHHHHHHhhC-CCceEEEeecCCCCCHHHHHHHHhc-C--CCeeccCccccc
Q 026651 145 SWGVD-YIVLTSVDRDD-IPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHS-G--LDVFAHNIETVK 218 (235)
Q Consensus 145 ~~Gl~-y~VVTSg~Rdd-L~D~ga~~~a~~Ir~Ik~~~-p~~~ievl~sdg~l~~e~l~~L~eA-G--~d~ynHNLETs~ 218 (235)
...+. |++|--..+|- .++.|++.+.+-|+.+++.. .+.-+++|.+||.+|.+.+++|.++ + +-+||=-++-++
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~ 127 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVP 127 (201)
T ss_dssp HTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSS
T ss_pred hcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhC
Confidence 55665 77775433331 26779999999999999863 4567999999999999999999874 3 234554444443
Q ss_pred c
Q 026651 219 R 219 (235)
Q Consensus 219 r 219 (235)
.
T Consensus 128 d 128 (201)
T PF03932_consen 128 D 128 (201)
T ss_dssp T
T ss_pred C
Confidence 3
No 344
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=62.19 E-value=84 Score=25.93 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCC-C----HHHHHHHHhcCCCee
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-D----LRAVETLVHSGLDVF 210 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l-~----~e~l~~L~eAG~d~y 210 (235)
.+.+++|.+.+++.+.++|-.. ....++-++++.+++.... .+-+.+--... . ++..++|++.|++..
T Consensus 40 e~~v~aa~~~~adiVglS~L~t-----~~~~~~~~~~~~l~~~gl~-~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 40 EEFIDAAIETDADAILVSSLYG-----HGEIDCKGLREKCDEAGLK-DILLYVGGNLVVGKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred HHHHHHHHHcCCCEEEEecccc-----CCHHHHHHHHHHHHHCCCC-CCeEEEECCCCCChhhhHHHHHHHHHcCCCEE
Confidence 3445577777888887776543 3367888999999886431 24555544332 2 334578999999864
No 345
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=62.10 E-value=43 Score=30.31 Aligned_cols=77 Identities=18% Similarity=0.069 Sum_probs=48.1
Q ss_pred CchhHHHHHHHHHHcC-CcEEEE------EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC-HHHHHHHH
Q 026651 132 DPMEPENTAKAIASWG-VDYIVL------TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLV 203 (235)
Q Consensus 132 d~eE~~~~A~aa~~~G-l~y~VV------TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~-~e~l~~L~ 203 (235)
++++..+.|+.+++.| ++++-+ +..-. ..-....+.+.++|++||+.. +.-|-+=.+...-+ .+-++.|.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg-~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~ 179 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGG-MAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAE 179 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCc-cccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHH
Confidence 4788999999999998 886544 22101 122234678999999999864 22233322222112 34467889
Q ss_pred hcCCCee
Q 026651 204 HSGLDVF 210 (235)
Q Consensus 204 eAG~d~y 210 (235)
++|+|-+
T Consensus 180 ~~G~d~i 186 (301)
T PRK07259 180 EAGADGL 186 (301)
T ss_pred HcCCCEE
Confidence 9999865
No 346
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=62.10 E-value=57 Score=31.15 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=63.8
Q ss_pred cCCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCC-CCCCchHHHHHHHHHHHhhCCCceEEE
Q 026651 109 LGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVEC 187 (235)
Q Consensus 109 lG~~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rdd-L~D~ga~~~a~~Ir~Ik~~~p~~~iev 187 (235)
+-+.+.||= .|+ .+..++.++-+++|+...+.|+++.=++|.-.+. .|- +....+.+++|++ .+.+.+-.
T Consensus 49 I~DtTlRDG---~Q~---~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq--mad~~ev~~~i~~-~~~~~~~~ 119 (347)
T PLN02746 49 IVEVGPRDG---LQN---EKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQ--LADAKDVMAAVRN-LEGARFPV 119 (347)
T ss_pred EEECCCCcc---CcC---CCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cccHHHHHHHHHh-ccCCceeE
Confidence 346666662 233 1346899999999999999999987777754321 111 1122334455544 23344555
Q ss_pred eecCCCCCHHHHHHHHhcCCCeeccCccccccc
Q 026651 188 LTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL 220 (235)
Q Consensus 188 l~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rl 220 (235)
+++ +.+.+++.+++|++.++==+=+|+.|
T Consensus 120 l~~----n~~die~A~~~g~~~v~i~~s~Sd~h 148 (347)
T PLN02746 120 LTP----NLKGFEAAIAAGAKEVAVFASASESF 148 (347)
T ss_pred EcC----CHHHHHHHHHcCcCEEEEEEecCHHH
Confidence 554 89999999999999887665555544
No 347
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=61.86 E-value=57 Score=29.28 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEee------cCCCCCCCchHHHHHHHHHHHhhC--CCceEEEeecCCCCCHHHHHHHH
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSV------DRDDIPDGGSGHFARTVKAMKKQK--PDIMVECLTSDFRGDLRAVETLV 203 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg------~RddL~D~ga~~~a~~Ir~Ik~~~--p~~~ievl~sdg~l~~e~l~~L~ 203 (235)
++++..+.|+.+++.|++++-|.-. +++++ .+..+.+.++|++||+.. | +.+. +.++.--..+-++.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~-~~~~~~~~eiv~~vr~~~~~P-v~vK-l~~~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAF-GTDPEAVAEIVKAVKKATDVP-VIVK-LTPNVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccc-cCCHHHHHHHHHHHHhccCCC-EEEE-eCCCchhHHHHHHHHH
Confidence 3688899999999999987655322 12212 134578889999999863 3 3333 2333221234467788
Q ss_pred hcCCCee
Q 026651 204 HSGLDVF 210 (235)
Q Consensus 204 eAG~d~y 210 (235)
++|+|.+
T Consensus 177 ~~G~d~i 183 (296)
T cd04740 177 EAGADGL 183 (296)
T ss_pred HcCCCEE
Confidence 9999854
No 348
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.56 E-value=48 Score=30.58 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+.|+.+.+.|++|+.+ |. -+.+.+.++++.++ .| +-+.++ |-.+.+.+..++++|+|.+.
T Consensus 199 eea~~A~~~gaDyI~l-----D~---~~~e~l~~~~~~~~--~~---i~i~Ai-GGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 199 EQVREAVAAGADIIMF-----DN---RTPDEIREFVKLVP--SA---IVTEAS-GGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred HHHHHHHHcCCCEEEE-----CC---CCHHHHHHHHHhcC--CC---ceEEEE-CCCCHHHHHHHHHcCCCEEE
Confidence 4466677899999877 22 33455555554443 12 233444 44599999999999999875
No 349
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=61.02 E-value=20 Score=33.44 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCC-CCCchHHHHHHHHHHHh-hCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKK-QKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL-~D~ga~~~a~~Ir~Ik~-~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
+-..+.+++++.+|+.++|+=.|..... .+.+++++++.+.++-. +...+.+|-.++-|.+-..++..|++
T Consensus 87 ~~l~~e~~r~~~lG~~~lv~HpG~~~~~~~e~~l~~i~~~Ln~~~~~~~v~i~~e~~agegs~~g~~F~~L~e 159 (280)
T COG0648 87 ERLIDEIDRCEQLGAKLLVFHPGSYLGQGKEEGLNRIAEALNELLEEEGVIILLENTAGEGSGKGTQFGELAE 159 (280)
T ss_pred HHHHHHHHHHHHcCCcEEEECCccccCCCHHHHHHHHHHHHHHHhhccCCeEEEEEeccccCccccchhhHHH
Confidence 3455668999999999999988876332 44688899998888876 33345678788877776555555554
No 350
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.48 E-value=28 Score=33.37 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=45.2
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
++....+.++.+.+.|+++++|-..++|.---.....+...++.+++ . .+.+.+ -...+.+.++.+.++|+|.+
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~---~ipVIa-G~V~t~e~A~~l~~aGAD~V 212 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-L---DVPVIV-GGCVTYTTALHLMRTGAAGV 212 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-C---CCCEEE-eCCCCHHHHHHHHHcCCCEE
Confidence 34456788889999999988875444332110101123333444443 2 244555 33668999999999999997
No 351
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=60.26 E-value=66 Score=29.80 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=61.4
Q ss_pred CCCchhHHHHHHHHHHcCCc---EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 130 PPDPMEPENTAKAIASWGVD---YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~---y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
+-|.-.|++.|+.-.+.|++ |-=||+-.. +=+-+.+.|+++-++ +-|=+++--|.-+.|.+++|..+|
T Consensus 26 lrd~GDpVelA~~Y~e~GADElvFlDItAs~~------gr~~~~~vv~r~A~~---vfiPltVGGGI~s~eD~~~ll~aG 96 (256)
T COG0107 26 LRDAGDPVELAKRYNEEGADELVFLDITASSE------GRETMLDVVERVAEQ---VFIPLTVGGGIRSVEDARKLLRAG 96 (256)
T ss_pred hhhcCChHHHHHHHHHcCCCeEEEEecccccc------cchhHHHHHHHHHhh---ceeeeEecCCcCCHHHHHHHHHcC
Confidence 56778899999999999998 333454432 234567777777664 468889999999999999999999
Q ss_pred CCeeccCcccc
Q 026651 207 LDVFAHNIETV 217 (235)
Q Consensus 207 ~d~ynHNLETs 217 (235)
.|-+.-|=-.+
T Consensus 97 ADKVSINsaAv 107 (256)
T COG0107 97 ADKVSINSAAV 107 (256)
T ss_pred CCeeeeChhHh
Confidence 99999885444
No 352
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=60.25 E-value=75 Score=28.65 Aligned_cols=80 Identities=23% Similarity=0.107 Sum_probs=49.6
Q ss_pred CchhHHHHHHHHHHcC--CcEEEE------EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC-HHHHHHH
Q 026651 132 DPMEPENTAKAIASWG--VDYIVL------TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETL 202 (235)
Q Consensus 132 d~eE~~~~A~aa~~~G--l~y~VV------TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~-~e~l~~L 202 (235)
++++..+.|+.+++.+ +++.-+ +.++.+.+ -+..+.+.++|++||+.. +.-|-+=++...-+ .+-++.|
T Consensus 101 ~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l-~~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l 178 (300)
T TIGR01037 101 SVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAI-GQDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAA 178 (300)
T ss_pred CHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCcccc-ccCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHH
Confidence 4688999999998764 554333 22333222 234678999999999864 12233333322212 3456778
Q ss_pred HhcCCCeec-cC
Q 026651 203 VHSGLDVFA-HN 213 (235)
Q Consensus 203 ~eAG~d~yn-HN 213 (235)
.++|+|.++ ||
T Consensus 179 ~~~G~d~i~v~n 190 (300)
T TIGR01037 179 EEAGADGLTLIN 190 (300)
T ss_pred HHcCCCEEEEEc
Confidence 999999997 66
No 353
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=60.24 E-value=82 Score=25.47 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=48.0
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC-CCceEEE-eecCCCCCHHHHHH----HHh
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVEC-LTSDFRGDLRAVET----LVH 204 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~-p~~~iev-l~sdg~l~~e~l~~----L~e 204 (235)
...++..+.|+.+.++|++.++++..-.- .+++..+.+.+.+++|.+.. .+..+=+ ..|.+.++.+.+.+ +.+
T Consensus 62 ~~~~~~~~~a~~a~~~Gad~i~v~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~ 140 (201)
T cd00945 62 TTTEVKVAEVEEAIDLGADEIDVVINIGS-LKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAE 140 (201)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeccHHH-HhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999998877644321 12222466667777776642 1222221 23444445565554 357
Q ss_pred cCCCeec
Q 026651 205 SGLDVFA 211 (235)
Q Consensus 205 AG~d~yn 211 (235)
+|++.+-
T Consensus 141 ~g~~~iK 147 (201)
T cd00945 141 AGADFIK 147 (201)
T ss_pred hCCCEEE
Confidence 8887764
No 354
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=59.93 E-value=32 Score=31.38 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=54.6
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.|+.+|..+..+.+.+.|++|+=-..|-. .+++ =.+-++.|++.. +-.+++=+|-|.-+.|++..+.+||.+|
T Consensus 136 ~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gA--T~edv~lM~~~v-g~~vgvKaSGGIrt~eda~~~i~aga~R 208 (228)
T COG0274 136 LLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGA--TVEDVKLMKETV-GGRVGVKASGGIRTAEDAKAMIEAGATR 208 (228)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCC--CHHHHHHHHHHh-ccCceeeccCCcCCHHHHHHHHHHhHHH
Confidence 68899999999999999999865544432 2221 133444444432 2257888999999999999999999888
Q ss_pred ec
Q 026651 210 FA 211 (235)
Q Consensus 210 yn 211 (235)
+.
T Consensus 209 iG 210 (228)
T COG0274 209 IG 210 (228)
T ss_pred hc
Confidence 74
No 355
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=59.65 E-value=36 Score=30.23 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCC-CCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rdd-L~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
+.|..+.+..+.+.+....|+.+.|+..-. -...-...+.+.|+++|+.. .+.+++-.|.-+.|++++++++ +|.
T Consensus 136 i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~---~~pI~vggGI~~~e~~~~~~~~-ADg 211 (242)
T cd04724 136 VAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT---DLPIAVGFGISTPEQAAEVAKY-ADG 211 (242)
T ss_pred eCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC---CCcEEEEccCCCHHHHHHHHcc-CCE
Confidence 344444444444444444555554432210 00111245667788888742 4667777777779999999998 875
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 212 v 212 (242)
T cd04724 212 V 212 (242)
T ss_pred E
Confidence 4
No 356
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=59.58 E-value=92 Score=29.08 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=50.0
Q ss_pred CCCCCchhHHHH-------HHHHHHcCCcEEEEEe--------------ecCCCCCC----CchHHHHHHHHHHHhhC-C
Q 026651 128 PAPPDPMEPENT-------AKAIASWGVDYIVLTS--------------VDRDDIPD----GGSGHFARTVKAMKKQK-P 181 (235)
Q Consensus 128 p~~ld~eE~~~~-------A~aa~~~Gl~y~VVTS--------------g~RddL~D----~ga~~~a~~Ir~Ik~~~-p 181 (235)
|..++.+|+.++ |+.+++.|.+.+=|-. -+|.|--- .-+....++|++||+.. +
T Consensus 124 p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~ 203 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE 203 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 445777777644 7788888987544422 12322100 12677889999999875 3
Q ss_pred CceEEEee--cCCC---CCH----HHHHHHHhcCCCeecc
Q 026651 182 DIMVECLT--SDFR---GDL----RAVETLVHSGLDVFAH 212 (235)
Q Consensus 182 ~~~ievl~--sdg~---l~~----e~l~~L~eAG~d~ynH 212 (235)
+..|.+=. .|+. .+. +-++.|.++|+|.+|=
T Consensus 204 d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 204 DFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred CceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 44444322 2321 343 3346788899887753
No 357
>PRK07695 transcriptional regulator TenI; Provisional
Probab=59.56 E-value=34 Score=29.04 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=39.6
Q ss_pred HHHHHHHcCCcEEEEEeec----CCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 139 TAKAIASWGVDYIVLTSVD----RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 139 ~A~aa~~~Gl~y~VVTSg~----RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.++.+.+.|++|+++--+. ..+.+..+. +.++.+++.. .+.+.+..|. +.+.+..+.++|++.+
T Consensus 107 ~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~----~~l~~~~~~~---~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 107 EAIQAEKNGADYVVYGHVFPTDCKKGVPARGL----EELSDIARAL---SIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCH----HHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 3567788999997642111 111112233 4445555432 3566776666 9999999999999865
No 358
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=59.55 E-value=49 Score=32.17 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=45.6
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEe-ecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTS-g~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
.+.++.+.+.++.. ..+++++++-+ ++-+ +.....+-|+++|+..+++ .+.+ +|-.+.+.+..++++|+|
T Consensus 283 ~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~-----~~~~~~~kI~~ikk~~~~~--~I~V-dGGI~~eti~~l~~aGAD 353 (391)
T PRK13307 283 MLNVEDPVKLLESL-KVKPDVVELHRGIDEE-----GTEHAWGNIKEIKKAGGKI--LVAV-AGGVRVENVEEALKAGAD 353 (391)
T ss_pred EcCCCCHHHHHHHh-hCCCCEEEEccccCCC-----cccchHHHHHHHHHhCCCC--cEEE-ECCcCHHHHHHHHHcCCC
Confidence 35566677766666 66788876654 4321 1223335777788765443 3334 344568899999999999
Q ss_pred ee
Q 026651 209 VF 210 (235)
Q Consensus 209 ~y 210 (235)
.+
T Consensus 354 iv 355 (391)
T PRK13307 354 IL 355 (391)
T ss_pred EE
Confidence 64
No 359
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=59.26 E-value=54 Score=30.41 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 166 SGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 166 a~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
...+.+.|+.||+.. .+=+++-.|.=+.|+++++.++ .|
T Consensus 190 ~~~~~~~v~~vr~~~---~~Pv~vGFGIs~~e~~~~v~~~-AD 228 (265)
T COG0159 190 SADVKELVKRVRKYT---DVPVLVGFGISSPEQAAQVAEA-AD 228 (265)
T ss_pred chhHHHHHHHHHHhc---CCCeEEecCcCCHHHHHHHHHh-CC
Confidence 345788888898864 4677888999999999999988 55
No 360
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=58.98 E-value=73 Score=27.54 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHH
Q 026651 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVET 201 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~ 201 (235)
+.+.+.++.+.+..++ .|.+.-+.|.++++++..
T Consensus 146 ~~l~~~~~~~~~~g~~-~i~l~Dt~G~~~P~~v~~ 179 (265)
T cd03174 146 EYVLEVAKALEEAGAD-EISLKDTVGLATPEEVAE 179 (265)
T ss_pred HHHHHHHHHHHHcCCC-EEEechhcCCcCHHHHHH
Confidence 3444444444443221 344444455555544433
No 361
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=58.88 E-value=37 Score=30.63 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=38.2
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 141 KAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 141 ~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+.+.+.|++++-+++.+...+. -+++.+ .++.+..|+. +-+.+--|..+.+.++.++++|.+.+
T Consensus 174 ~~A~~~gadiIgin~rdl~~~~-~d~~~~----~~l~~~~p~~-~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 174 ERALKLGAPLIGINNRNLKTFE-VDLETT----ERLAPLIPSD-RLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred HHHHHcCCCEEEECCCCccccc-CCHHHH----HHHHHhCCCC-CEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 4566889998777743322221 124444 4444444431 22333446668999999999999865
No 362
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=58.82 E-value=45 Score=30.72 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=66.6
Q ss_pred CCCcccCCCCCCCC-CCchhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCC-CceEEEeecCCC
Q 026651 117 CRFCAVKTSRNPAP-PDPMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFR 193 (235)
Q Consensus 117 C~FCAQSt~~~p~~-ld~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~~ievl~sdg~ 193 (235)
=+=|++= +. |.- -..+--...|+.+.+.|++ .=+|--... +.+++.+.+.+-|++|++... +..+.|..--+.
T Consensus 67 vkv~tVi-gF-P~G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~--lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~ 142 (257)
T PRK05283 67 IRIATVT-NF-PHGNDDIDIALAETRAAIAYGADEVDVVFPYRA--LMAGNEQVGFELVKACKEACAANVLLKVIIETGE 142 (257)
T ss_pred CeEEEEe-cC-CCCCCcHHHHHHHHHHHHHcCCCEEeeeccHHH--HhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccc
Confidence 4445543 33 432 3334445667788888997 555555544 788889999999999998754 467888888888
Q ss_pred CCHHH-HH----HHHhcCCCeeccCccccccccc
Q 026651 194 GDLRA-VE----TLVHSGLDVFAHNIETVKRLQR 222 (235)
Q Consensus 194 l~~e~-l~----~L~eAG~d~ynHNLETs~rlfp 222 (235)
|++++ +. ...+||+|- |-||-.|.+
T Consensus 143 L~~ee~i~~a~~~a~~aGADF----VKTSTGf~~ 172 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADF----IKTSTGKVP 172 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCE----EEcCCCCCC
Confidence 98774 43 567888875 456666553
No 363
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=58.76 E-value=55 Score=29.12 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHH----HHhcCCC
Q 026651 134 MEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVET----LVHSGLD 208 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~----L~eAG~d 208 (235)
+.-...++.+.+.|++ .-+|-.... +..++.+.+.+-|+++++......+.+..--+.|+++++.+ ..++|+|
T Consensus 74 ~~K~~e~~~Ai~~GA~EiD~Vin~~~--~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agad 151 (221)
T PRK00507 74 AVKAFEAKDAIANGADEIDMVINIGA--LKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGAD 151 (221)
T ss_pred HHHHHHHHHHHHcCCceEeeeccHHH--hcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCC
Confidence 3344567778889987 555555544 67788999999999999865446788888888888777654 5678888
Q ss_pred eeccCccccccc
Q 026651 209 VFAHNIETVKRL 220 (235)
Q Consensus 209 ~ynHNLETs~rl 220 (235)
-|-|+-.|
T Consensus 152 ----fIKTsTG~ 159 (221)
T PRK00507 152 ----FVKTSTGF 159 (221)
T ss_pred ----EEEcCCCC
Confidence 45666555
No 364
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=58.72 E-value=51 Score=29.85 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCCCC----CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV 203 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL----~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~ 203 (235)
.+|.+++++.|+.-.+.|+++.=| .|. |++. ++.|.+.+..+|+.|++.. ++-| |.=.-+.+.++.-.
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st-~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~pl----SIDT~~~~v~e~al 93 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGEST-RPGADPVSVEEELERVIPVLEALRGEL-DVLI----SVDTFRAEVARAAL 93 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcC-CCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcE----EEeCCCHHHHHHHH
Confidence 589999999999999999997666 333 2211 3457778888899998753 1222 22233678888888
Q ss_pred hcCCCeecc-Ccccc-ccccc
Q 026651 204 HSGLDVFAH-NIETV-KRLQR 222 (235)
Q Consensus 204 eAG~d~ynH-NLETs-~rlfp 222 (235)
++|++.+|- +.++- +..++
T Consensus 94 ~~G~~iINdisg~~~~~~~~~ 114 (257)
T cd00739 94 EAGADIINDVSGGSDDPAMLE 114 (257)
T ss_pred HhCCCEEEeCCCCCCChHHHH
Confidence 889998884 66553 34443
No 365
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.68 E-value=14 Score=32.99 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=60.8
Q ss_pred CCCchhHHHHHHHHHHcCCcE--EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC----HHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLV 203 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y--~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~----~e~l~~L~ 203 (235)
-+|.+...+..+...+.|++- +.-|+|-...|+++|-.++.+.+.+.-. . .+.+++.-+-.+ .+.++...
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~--~--~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN--G--RVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC--C--CCcEEeccCCccHHHHHHHHHHHH
Confidence 589999999999999999983 3447777777888777777776655432 1 234444444333 45556778
Q ss_pred hcCCCe--------eccCcccccccccccc
Q 026651 204 HSGLDV--------FAHNIETVKRLQRIVR 225 (235)
Q Consensus 204 eAG~d~--------ynHNLETs~rlfp~Vc 225 (235)
++|+|. |.-+=+..-+||..|+
T Consensus 93 ~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia 122 (284)
T cd00950 93 KAGADAALVVTPYYNKPSQEGLYAHFKAIA 122 (284)
T ss_pred HcCCCEEEEcccccCCCCHHHHHHHHHHHH
Confidence 889873 2223355667777776
No 366
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=58.63 E-value=33 Score=31.31 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+.|+.+.+.|++|+.+-.. . .+.+.++++.+++ .+-+.++-| .+.+.+..++++|+|.+.
T Consensus 193 eea~~A~~~gaDyI~ld~~-----~---~e~l~~~~~~~~~-----~ipi~AiGG-I~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 193 EQLKEALEAGADIIMLDNM-----S---PEELREAVALLKG-----RVLLEASGG-ITLENIRAYAETGVDYIS 252 (268)
T ss_pred HHHHHHHHcCCCEEEECCc-----C---HHHHHHHHHHcCC-----CCcEEEECC-CCHHHHHHHHHcCCCEEE
Confidence 4466677889999887322 2 3455555554432 233455545 499999999999999874
No 367
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=58.48 E-value=23 Score=29.71 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=39.3
Q ss_pred HHHHHHcCCcEEEEEee----cCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 140 AKAIASWGVDYIVLTSV----DRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 140 A~aa~~~Gl~y~VVTSg----~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
++.+.+.|++|+.+..+ ...+.+..|.+.+.+..+..+ +-+++ +|-.+.+.+..|+++|.+-+
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~-------~pv~A-lGGI~~~~i~~l~~~Ga~gv 174 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASP-------IPVYA-LGGITPENIPELREAGADGV 174 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTS-------SCEEE-ESS--TTTHHHHHHTT-SEE
T ss_pred HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCC-------CCEEE-EcCCCHHHHHHHHHcCCCEE
Confidence 66777899999998766 233345556666555443332 33444 34458999999999998865
No 368
>PRK00915 2-isopropylmalate synthase; Validated
Probab=58.38 E-value=27 Score=34.66 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCC---ceEEE--eecCCCCCHHHHHHHH
Q 026651 131 PDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVEC--LTSDFRGDLRAVETLV 203 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~---~~iev--l~sdg~l~~e~l~~L~ 203 (235)
-|++...++++++.+.|++.+.+ |.|.. .| ..+.+.|+.+++..|+ +.|++ ---.|+...-.+..+
T Consensus 146 ~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~--~P----~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv- 218 (513)
T PRK00915 146 TDLDFLCRVVEAAIDAGATTINIPDTVGYT--TP----EEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAV- 218 (513)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCCCC--CH----HHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHH-
Confidence 56788888888888888874333 55543 34 3677778888776654 33444 344455445555554
Q ss_pred hcCCCeec
Q 026651 204 HSGLDVFA 211 (235)
Q Consensus 204 eAG~d~yn 211 (235)
+||+++++
T Consensus 219 ~aGa~~Vd 226 (513)
T PRK00915 219 EAGARQVE 226 (513)
T ss_pred HhCCCEEE
Confidence 58887764
No 369
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=57.92 E-value=44 Score=31.95 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=51.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceE-EEeecCCCCCHHHHHHHHhcCCC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV-ECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~i-evl~sdg~l~~e~l~~L~eAG~d 208 (235)
.++++++.+..+.+.+.|+...+=+.++ +.++.+.+.++++.+..|-... -.+.=...+++++++++++.|+.
T Consensus 291 ~~~~e~l~~~~~~a~~~g~~v~~Ha~gd------~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~ 364 (479)
T cd01300 291 LISPEELEELVRAADEAGLQVAIHAIGD------RAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVI 364 (479)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEecH------HHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCc
Confidence 5789999999999999998744444443 3467777777777766441111 12233345689999999999975
Q ss_pred e
Q 026651 209 V 209 (235)
Q Consensus 209 ~ 209 (235)
+
T Consensus 365 ~ 365 (479)
T cd01300 365 A 365 (479)
T ss_pred e
Confidence 4
No 370
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=57.77 E-value=12 Score=33.66 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=33.5
Q ss_pred CCCCCcccCCCCC----CC--CCCchhHHHHHHHHHHcCCc-EEEEEeecCC
Q 026651 115 RGCRFCAVKTSRN----PA--PPDPMEPENTAKAIASWGVD-YIVLTSVDRD 159 (235)
Q Consensus 115 edC~FCAQSt~~~----p~--~ld~eE~~~~A~aa~~~Gl~-y~VVTSg~Rd 159 (235)
-|=.||+--|.+. .. .+|-|-.+..|++|++.|.+ |++|.|.-.|
T Consensus 84 ~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd 135 (238)
T KOG4039|consen 84 PDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD 135 (238)
T ss_pred CceEEEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC
Confidence 3456777764321 11 58999999999999999998 7888887654
No 371
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=57.75 E-value=48 Score=29.60 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=55.5
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccccc
Q 026651 141 KAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL 220 (235)
Q Consensus 141 ~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rl 220 (235)
-.+...|+.|+=.=-||=||....|+..+.++.+.++...+ ..++|+--+. +.+++-.+..+|.+.+-=..+....+
T Consensus 118 ~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~--~tkILaAS~r-~~~~v~~~~~~G~d~vTip~~vl~~l 194 (220)
T PRK12653 118 LLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAP--QAKVLAASFK-TPRQALDCLLAGCESITLPLDVAQQM 194 (220)
T ss_pred HHHHhcCCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCC--CcEEEEEecC-CHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 34456788886666676666666678888887777776544 3577766555 67777778889999887666666665
Q ss_pred cc
Q 026651 221 QR 222 (235)
Q Consensus 221 fp 222 (235)
|.
T Consensus 195 ~~ 196 (220)
T PRK12653 195 IS 196 (220)
T ss_pred Hc
Confidence 54
No 372
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=57.61 E-value=21 Score=33.25 Aligned_cols=39 Identities=8% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 168 ~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
-+.+.|+++|+..|...|||=+. +.|++++.+++|+|++
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv~----tleqa~ea~~agaDiI 213 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEAD----TPKEAIAALRAQPDVL 213 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC----CHHHHHHHHHcCCCEE
Confidence 57789999998877655555543 8999999999999987
No 373
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=57.38 E-value=17 Score=32.30 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=59.4
Q ss_pred CCCchhHHHHHHHHHHcCCcE--EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC----HHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLV 203 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y--~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~----~e~l~~L~ 203 (235)
-+|.+...+..+...+.|++- +.-|+|-...|+++|-.++.+.+.+.-. . .+.+.+.-+-.+ .+.++...
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~--~--~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA--G--RVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC--C--CCeEEEecCCccHHHHHHHHHHHH
Confidence 689999999999999999983 4447787777787666666665544322 1 234455445443 34556778
Q ss_pred hcCCCee--------ccCcccccccccccc
Q 026651 204 HSGLDVF--------AHNIETVKRLQRIVR 225 (235)
Q Consensus 204 eAG~d~y--------nHNLETs~rlfp~Vc 225 (235)
++|+|.+ ..+=|-..+||..|.
T Consensus 90 ~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia 119 (281)
T cd00408 90 EAGADGVLVVPPYYNKPSQEGIVAHFKAVA 119 (281)
T ss_pred HcCCCEEEECCCcCCCCCHHHHHHHHHHHH
Confidence 8898853 223455556666665
No 374
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=57.25 E-value=22 Score=33.23 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.-+.++.+.+++..+ ..|.+++..|+++.+++++|.++|++.+
T Consensus 231 ~Tl~~aa~~Lk~~GA-~~V~~~~tHglf~~~a~~~l~~~~i~~i 273 (320)
T PRK02269 231 GTICHAADALAEAGA-TEVYASCTHPVLSGPALDNIQKSAIEKL 273 (320)
T ss_pred HHHHHHHHHHHHCCC-CEEEEEEECcccCchHHHHHHhCCCCEE
Confidence 357888899987654 4799999999999999999999999764
No 375
>PLN02321 2-isopropylmalate synthase
Probab=57.18 E-value=28 Score=35.95 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=47.6
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCC---ceEEEee--cCCCCCHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPD---IMVECLT--SDFRGDLRAVETL 202 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~---~~ievl~--sdg~l~~e~l~~L 202 (235)
..|++...++++++.++|++.+.+ |-|.. +| .++.+.|+.|++..|. +.|++-. -.|+.....+..
T Consensus 236 rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~--~P----~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaA- 308 (632)
T PLN02321 236 RSDPEFLYRILGEVIKAGATTLNIPDTVGYT--LP----SEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAG- 308 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecccccCC--CH----HHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHH-
Confidence 366788888888888888874443 54543 34 4777778888776653 3345444 335555555544
Q ss_pred HhcCCCeecc
Q 026651 203 VHSGLDVFAH 212 (235)
Q Consensus 203 ~eAG~d~ynH 212 (235)
.++|+++++-
T Consensus 309 v~AGA~~Vd~ 318 (632)
T PLN02321 309 AHAGARQVEV 318 (632)
T ss_pred HHhCCCEEEE
Confidence 4778877653
No 376
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=57.12 E-value=40 Score=32.23 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=37.8
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCC-------chHHHHHHHHHHHhhCCCceE
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG-------GSGHFARTVKAMKKQKPDIMV 185 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~-------ga~~~a~~Ir~Ik~~~p~~~i 185 (235)
+..+.+.+.++.+.++|++.+++--+-.++.+|. +-.-+.++|++||+..|++.|
T Consensus 54 ~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~v 115 (324)
T PF00490_consen 54 YSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLV 115 (324)
T ss_dssp EEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEE
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEE
Confidence 6779999999999999999555544422223332 234789999999999998653
No 377
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=56.89 E-value=24 Score=35.31 Aligned_cols=32 Identities=6% Similarity=-0.106 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHH
Q 026651 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAV 199 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l 199 (235)
+.+++.++++.+..++ .|.++-..|.++++++
T Consensus 239 efl~~~~~~a~~~Gad-~I~l~DTvG~~tP~~v 270 (503)
T PLN03228 239 EFLCKILGEAIKAGAT-SVGIADTVGINMPHEF 270 (503)
T ss_pred HHHHHHHHHHHhcCCC-EEEEecCCCCCCHHHH
Confidence 3344444444332221 2444444444444443
No 378
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=56.87 E-value=10 Score=34.38 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=62.0
Q ss_pred CCCCchhHHHHHHHHHHcCCcE--EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC---HHHHHHHH
Q 026651 129 APPDPMEPENTAKAIASWGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD---LRAVETLV 203 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y--~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~---~e~l~~L~ 203 (235)
.-+|.+...+..+...+.|++- +.-|+|---.|+++|-.++.+.+.+.-. . .+-|.+.-+..+ .+.++...
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~--~--~~pvi~gv~~~t~~~i~~a~~a~ 91 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA--G--RVPVLAGAGYGTATAIAYAQAAE 91 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--C--CCCEEEecCCCHHHHHHHHHHHH
Confidence 3589999999999999999983 4447777777888777777664433321 1 122333333333 34456677
Q ss_pred hcCCCe-------e-ccCccccccccccccC
Q 026651 204 HSGLDV-------F-AHNIETVKRLQRIVRD 226 (235)
Q Consensus 204 eAG~d~-------y-nHNLETs~rlfp~Vcd 226 (235)
++|+|- | ..+-|...+||..|++
T Consensus 92 ~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~ 122 (289)
T cd00951 92 KAGADGILLLPPYLTEAPQEGLYAHVEAVCK 122 (289)
T ss_pred HhCCCEEEECCCCCCCCCHHHHHHHHHHHHh
Confidence 888876 3 4567888888888874
No 379
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=56.60 E-value=45 Score=31.27 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=51.4
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC-CCe
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG-LDV 209 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG-~d~ 209 (235)
.+.+|..++++...+.|++|+-|+.|+..... -..+.+.+++||+.. ++-|++.-+. +.+.++++.+.| .|-
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~---~~~~~~~~~~ik~~~---~ipvi~~G~i-~~~~a~~~l~~g~~D~ 310 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGNP---EDQPPDFLDFLRKAF---KGPLIAAGGY-DAESAEAALADGKADL 310 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc---cccchHHHHHHHHHc---CCCEEEECCC-CHHHHHHHHHcCCCCE
Confidence 56788999999999999999888887542211 234567777787754 3456666554 588888888876 554
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 311 V 311 (338)
T cd02933 311 V 311 (338)
T ss_pred E
Confidence 3
No 380
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=56.34 E-value=56 Score=30.71 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
.+.|+.+.+.|++.+++- .-..+.+.++++.++. .+.+.+|-| .+.+.+..+++.|+|++.
T Consensus 218 leea~ea~~~gaDiI~LD--------n~s~e~~~~av~~~~~-----~~~ieaSGG-I~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 218 LDELDQALKAGADIIMLD--------NFTTEQMREAVKRTNG-----RALLEVSGN-VTLETLREFAETGVDFIS 278 (296)
T ss_pred HHHHHHHHHcCCCEEEeC--------CCChHHHHHHHHhhcC-----CeEEEEECC-CCHHHHHHHHhcCCCEEE
Confidence 456777778888776652 2224677777776653 345556655 499999999999999874
No 381
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=56.22 E-value=66 Score=26.06 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
.++..+..+++.+.|+.++.+.-. |.......+.+++|++......+.+++. +.++...++|++.+|
T Consensus 11 ~~~~~~~l~~l~~~g~~~i~lr~~------~~~~~~~~~~~~~i~~~~~~~~~~l~~~------~~~~~a~~~g~~~vh 77 (196)
T cd00564 11 GEDLLEVVEAALKGGVTLVQLREK------DLSARELLELARALRELCRKYGVPLIIN------DRVDLALAVGADGVH 77 (196)
T ss_pred cchHHHHHHHHHhcCCCEEEEeCC------CCCHHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEe
Confidence 456677788888889988776543 2334444555666665433345666764 356778888988775
No 382
>PRK05985 cytosine deaminase; Provisional
Probab=56.02 E-value=59 Score=30.26 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEeecCCCCCHH----HHHHHHh
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFRGDLR----AVETLVH 204 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~--~~ievl~sdg~l~~e----~l~~L~e 204 (235)
..+++..++.+.|++.|+.+-+=..-.+ |.+...+.+.++..++.... ..++=+.+++.++++ .+++|++
T Consensus 188 ~~~~~l~~~~~~A~~~g~~i~~Hv~e~~----d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae 263 (391)
T PRK05985 188 DPEGQLDIVFGLAERHGVGIDIHLHEPG----ELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAE 263 (391)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEeeCCCC----CccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHH
Confidence 3447778888999999986433333322 33455555666665543322 345555566666654 4699999
Q ss_pred cCCCeeccCccc
Q 026651 205 SGLDVFAHNIET 216 (235)
Q Consensus 205 AG~d~ynHNLET 216 (235)
+|+.+. ||...
T Consensus 264 ~g~~v~-~~~~~ 274 (391)
T PRK05985 264 AGVAIM-TNAPG 274 (391)
T ss_pred cCCeEE-EeCCC
Confidence 999764 45433
No 383
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=56.01 E-value=49 Score=33.37 Aligned_cols=146 Identities=16% Similarity=0.276 Sum_probs=77.2
Q ss_pred HHHHHccCChHhhhhhcCCCCccceeCCCCCCceeeeeeecCCCCCC-CCCCcccCCCC-CCCC---------------C
Q 026651 69 VKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTR-GCRFCAVKTSR-NPAP---------------P 131 (235)
Q Consensus 69 ~~~~l~~~~L~TVCeeA~CPNi~ec~~~~~~~~~taT~mIlG~~Cte-dC~FCAQSt~~-~p~~---------------l 131 (235)
++.+|+....-|. .|.++..+|.-=-.||- .|-||.|.-.. .|+- +
T Consensus 50 l~~~lr~KPvRt~-----------------sgvaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~y 112 (515)
T COG1243 50 LREILRRKPVRTI-----------------SGVAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRY 112 (515)
T ss_pred HHHHHhhcCcccc-----------------ccceEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccC
Confidence 7777776666554 12233444444669996 99999988211 1222 2
Q ss_pred Cc-hhHHHHHHHHHHcCCc---E-EEEEeecCCCCCCCchHHH-HHHHHHHH-------------h--hCCC--ceEEEe
Q 026651 132 DP-MEPENTAKAIASWGVD---Y-IVLTSVDRDDIPDGGSGHF-ARTVKAMK-------------K--QKPD--IMVECL 188 (235)
Q Consensus 132 d~-eE~~~~A~aa~~~Gl~---y-~VVTSg~RddL~D~ga~~~-a~~Ir~Ik-------------~--~~p~--~~ievl 188 (235)
|| .+...--+..+..|-. . .++..|+=..++-.=-+.| ..+.+++. + ..-+ +.||.
T Consensus 113 dpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiET- 191 (515)
T COG1243 113 DPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIET- 191 (515)
T ss_pred CcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEec-
Confidence 22 2222334456677742 3 5555555333332211222 22223332 0 1111 22332
Q ss_pred ecCCCCCHHHHHHHHhcCCCeeccCccccccccccccCCCCcccc
Q 026651 189 TSDFRGDLRAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGLVM 233 (235)
Q Consensus 189 ~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rlfp~Vcdtth~Y~~ 233 (235)
=||.. +++.++.|+.-|++++-=-+.|.-++--......|++++
T Consensus 192 RPD~~-~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHtved 235 (515)
T COG1243 192 RPDYI-DEEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHTVED 235 (515)
T ss_pred Ccccc-CHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCccHHH
Confidence 15554 799999999999999987777665544333335666654
No 384
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=55.83 E-value=74 Score=26.57 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=18.8
Q ss_pred EEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 185 VECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 185 ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+.+++.-|+ +.+.++.+.++|++.+
T Consensus 166 ~~i~v~GGI-~~env~~l~~~gad~i 190 (210)
T TIGR01163 166 ILIEVDGGV-NDDNARELAEAGADIL 190 (210)
T ss_pred ceEEEECCc-CHHHHHHHHHcCCCEE
Confidence 345554455 7899999999999865
No 385
>PLN02433 uroporphyrinogen decarboxylase
Probab=55.72 E-value=53 Score=30.53 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCcEEEEE--eecCCCCCCCchHHHH-----HHHHHHHhhCCCc--eEEEeecCCCCCHHHHHHHHhcC
Q 026651 136 PENTAKAIASWGVDYIVLT--SVDRDDIPDGGSGHFA-----RTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVT--Sg~RddL~D~ga~~~a-----~~Ir~Ik~~~p~~--~ievl~sdg~l~~e~l~~L~eAG 206 (235)
..+.+++..+.|+..+.+. ++. -|+.+.+++|+ ++++.|++..++. .+..| ++...++.+++.|
T Consensus 181 ~~~~~~~~ieaGa~~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c-----G~~~~~~~~~~~~ 253 (345)
T PLN02433 181 VIEYVDYQIDAGAQVVQIFDSWAG--HLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN-----GSGGLLERLAGTG 253 (345)
T ss_pred HHHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-----CCHHHHHHHHhcC
Confidence 4455777778899865443 332 37777777766 4777887754433 23334 2347799999999
Q ss_pred CCeec----cCccccccccc
Q 026651 207 LDVFA----HNIETVKRLQR 222 (235)
Q Consensus 207 ~d~yn----HNLETs~rlfp 222 (235)
+++++ .+|+.+++.++
T Consensus 254 ~~~i~~d~~~dl~e~~~~~g 273 (345)
T PLN02433 254 VDVIGLDWTVDMADARRRLG 273 (345)
T ss_pred CCEEEcCCCCCHHHHHHHhC
Confidence 99975 78888887776
No 386
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=55.69 E-value=46 Score=31.87 Aligned_cols=91 Identities=13% Similarity=0.207 Sum_probs=60.9
Q ss_pred CCCCCCCCCcccC---CCCCCCCCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEE
Q 026651 111 DTCTRGCRFCAVK---TSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC 187 (235)
Q Consensus 111 ~~CtedC~FCAQS---t~~~p~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~iev 187 (235)
..|+=.|-||.-= .-.....+++++..++-...+++|++-+=...|+ |.--+-.|.++++.+.+..| -|
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~----Ptp~lp~Ile~l~~~~~~iP----vv 197 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGD----PTPHLPFILEALRYASENIP----VV 197 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCC----CCCchHHHHHHHHHHhcCCC----EE
Confidence 4799999999632 1112346899999999999999999854333332 23336678888887776655 34
Q ss_pred eecCCCCCHHHHHHHHhcCCCee
Q 026651 188 LTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 188 l~sdg~l~~e~l~~L~eAG~d~y 210 (235)
--|.+-.++|.++.|. -=+|+|
T Consensus 198 wNSnmY~s~E~l~lL~-gvVDiy 219 (335)
T COG1313 198 WNSNMYMSEETLKLLD-GVVDIY 219 (335)
T ss_pred EecCCccCHHHHHHhh-ccceee
Confidence 5677777788775543 335655
No 387
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=55.52 E-value=63 Score=31.81 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=52.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEee--cCCCCCHHHHHHHHhc
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLT--SDFRGDLRAVETLVHS 205 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~--sdg~l~~e~l~~L~eA 205 (235)
..+++-..+.|+.+.++|++.+.+ |.|-- .. .++.+.|++||+..+ +.|++-+ ..|++..-.+. -.+|
T Consensus 150 ~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l---~P---~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~la-Aiea 221 (448)
T PRK12331 150 VHTIDYFVKLAKEMQEMGADSICIKDMAGIL---TP---YVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLK-AIEA 221 (448)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CH---HHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHH-HHHc
Confidence 367888899999999999985444 66643 22 478888889988754 4455543 44554444443 4588
Q ss_pred CCCeeccCcc
Q 026651 206 GLDVFAHNIE 215 (235)
Q Consensus 206 G~d~ynHNLE 215 (235)
|+++++--+.
T Consensus 222 Gad~vD~sv~ 231 (448)
T PRK12331 222 GADIIDTAIS 231 (448)
T ss_pred CCCEEEeecc
Confidence 9888765443
No 388
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=55.46 E-value=60 Score=32.24 Aligned_cols=77 Identities=25% Similarity=0.200 Sum_probs=51.7
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEE--eecCCCCCHHHHHHHHhc
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVEC--LTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~iev--l~sdg~l~~e~l~~L~eA 205 (235)
..+.+...+.|+.+.++|++.+.+ |.|-- .| .++.+.|++||+..+ +.|++ --..|++..-.+. -.+|
T Consensus 149 ~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l--~P----~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~la-Aiea 220 (467)
T PRK14041 149 VHTLEYYLEFARELVDMGVDSICIKDMAGLL--TP----KRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLA-AVEA 220 (467)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccCCc--CH----HHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHH-HHHh
Confidence 356788999999999999985444 77753 23 477888888888764 44444 4445555444444 4589
Q ss_pred CCCeeccCc
Q 026651 206 GLDVFAHNI 214 (235)
Q Consensus 206 G~d~ynHNL 214 (235)
|+++++--+
T Consensus 221 Gad~vD~sv 229 (467)
T PRK14041 221 GADMFDTAI 229 (467)
T ss_pred CCCEEEeec
Confidence 998876443
No 389
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=55.24 E-value=65 Score=30.46 Aligned_cols=71 Identities=20% Similarity=0.153 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCcEEEEEeecCC------------------CCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHH
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRD------------------DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRA 198 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~Rd------------------dL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~ 198 (235)
.+.|+.+.+.|+++++| ||... .+.+-+.. .++.+..+++..+ .+.+.++-|.-+...
T Consensus 200 ~~~a~~l~~~Gvd~I~V-sg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p-t~~~l~~i~~~~~--~ipvia~GGI~~~~d 275 (352)
T PRK05437 200 KETAKRLADAGVKAIDV-AGAGGTSWAAIENYRARDDRLASYFADWGIP-TAQSLLEARSLLP--DLPIIASGGIRNGLD 275 (352)
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCCCccchhhhhhhccccccccccccCC-HHHHHHHHHHhcC--CCeEEEECCCCCHHH
Confidence 47788888999999888 44321 01122222 3455666665432 578999999999999
Q ss_pred HHHHHhcCCCeec
Q 026651 199 VETLVHSGLDVFA 211 (235)
Q Consensus 199 l~~L~eAG~d~yn 211 (235)
+.+...+|.+.+.
T Consensus 276 v~k~l~~GAd~v~ 288 (352)
T PRK05437 276 IAKALALGADAVG 288 (352)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999987653
No 390
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=55.16 E-value=59 Score=33.15 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=52.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCC-CceEEEeecCCCCCHHHHHHHHhcC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
..+++..++.|+.+.++|++.+.+ |+|-- .| ..+.+.|++||+..+ .+.++.-.-.|+.-.-.+ .-.+||
T Consensus 150 ~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~--~P----~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~l-aAv~aG 222 (592)
T PRK09282 150 VHTIEKYVELAKELEEMGCDSICIKDMAGLL--TP----YAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYL-KAVEAG 222 (592)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcCCCc--CH----HHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHH-HHHHhC
Confidence 357899999999999999985544 77753 23 477888888888754 134444445555444444 445899
Q ss_pred CCeeccC
Q 026651 207 LDVFAHN 213 (235)
Q Consensus 207 ~d~ynHN 213 (235)
+++++--
T Consensus 223 ad~vD~a 229 (592)
T PRK09282 223 VDIIDTA 229 (592)
T ss_pred CCEEEee
Confidence 9887543
No 391
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=55.13 E-value=17 Score=31.71 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=47.8
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCC------CCHHHHHHHHhc
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR------GDLRAVETLVHS 205 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~------l~~e~l~~L~eA 205 (235)
+++.+...++.+.++|++|+=...+..-.-..++.+.|.++++... .|. .+.+.++-|. -+.+++..++++
T Consensus 144 ~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~--~p~-~~~Vk~sGGi~~~~~~~~l~~a~~~i~a 220 (236)
T PF01791_consen 144 KPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAP--VPG-KVGVKASGGIDAEDFLRTLEDALEFIEA 220 (236)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHS--STT-TSEEEEESSSSHHHHHHSHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcC--CCc-ceEEEEeCCCChHHHHHHHHHHHHHHHc
Confidence 5667899999999999998777666221111223344444443321 221 3568888898 677888888899
Q ss_pred CCCee
Q 026651 206 GLDVF 210 (235)
Q Consensus 206 G~d~y 210 (235)
|.++.
T Consensus 221 Ga~~~ 225 (236)
T PF01791_consen 221 GADRI 225 (236)
T ss_dssp THSEE
T ss_pred CChhH
Confidence 98763
No 392
>PRK07094 biotin synthase; Provisional
Probab=55.08 E-value=78 Score=28.75 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=49.9
Q ss_pred CchhHHHHHHHHHHcCCcEEEE---E--eecCC-CCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhc
Q 026651 132 DPMEPENTAKAIASWGVDYIVL---T--SVDRD-DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VV---T--Sg~Rd-dL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
+.++..+.++.+++++++++-+ + -|+.- +.+...++...+++...|...|++.|-..++.+.+.++.......+
T Consensus 193 t~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~ 272 (323)
T PRK07094 193 TLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKA 272 (323)
T ss_pred CHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHc
Confidence 3466667777777777653222 1 11110 1122456666777777777777766666655555556666778888
Q ss_pred CCCeeccCc
Q 026651 206 GLDVFAHNI 214 (235)
Q Consensus 206 G~d~ynHNL 214 (235)
|++.+==|+
T Consensus 273 Gan~~~~~~ 281 (323)
T PRK07094 273 GANVVMPNL 281 (323)
T ss_pred CCceecCCC
Confidence 887776665
No 393
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=55.03 E-value=58 Score=31.95 Aligned_cols=84 Identities=7% Similarity=0.111 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCC--CCCchHHHHHHHHHHHhhCCC--ceEEEeecCCC---CCHHHHHHHHhc--
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDI--PDGGSGHFARTVKAMKKQKPD--IMVECLTSDFR---GDLRAVETLVHS-- 205 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL--~D~ga~~~a~~Ir~Ik~~~p~--~~ievl~sdg~---l~~e~l~~L~eA-- 205 (235)
...+..+++.++|+.++|+..|..... .+.+++.+++.+.++-++..+ +.||-.+.-|. .+.+++..+.+.
T Consensus 219 ~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~v~ 298 (413)
T PTZ00372 219 AFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDIIALVE 298 (413)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHHHhcC
Confidence 355668899999999999988875211 245688888888887655433 34565544331 267888887763
Q ss_pred CCCeeccCccccc
Q 026651 206 GLDVFAHNIETVK 218 (235)
Q Consensus 206 G~d~ynHNLETs~ 218 (235)
..+++.=-|+|.-
T Consensus 299 ~~~rlGvCLDTcH 311 (413)
T PTZ00372 299 DKSRVGVCLDTCH 311 (413)
T ss_pred CcCCeEEEEEHHH
Confidence 2344444444443
No 394
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=54.98 E-value=19 Score=32.37 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=61.4
Q ss_pred CCCchhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC----HHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLV 203 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~----~e~l~~L~ 203 (235)
-+|.+...+..+...+.|++ ++.-|+|--..|++.|-.++.+.+.+.-+. .+.+.+.-+-.+ .+.++..+
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG----RVPVIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC----CCcEEeecCCchHHHHHHHHHHHH
Confidence 58999999999999999998 344477777778887777777655544221 233444444322 45556778
Q ss_pred hcCCCe--------eccCccccccccccccC
Q 026651 204 HSGLDV--------FAHNIETVKRLQRIVRD 226 (235)
Q Consensus 204 eAG~d~--------ynHNLETs~rlfp~Vcd 226 (235)
++|+|. +..+=+...+||..|++
T Consensus 94 ~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~ 124 (292)
T PRK03170 94 KAGADGALVVTPYYNKPTQEGLYQHFKAIAE 124 (292)
T ss_pred HcCCCEEEECCCcCCCCCHHHHHHHHHHHHh
Confidence 889874 33344667777777763
No 395
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=54.62 E-value=1e+02 Score=29.26 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=54.0
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.++.++.+++|+...++|++++=+.... ..+.+ .+.++.|.+.... ..+++. .....+.++.++++|+++
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~---~~~~~----~e~i~~i~~~~~~--~~i~~~-~r~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPA---VSEDE----KEAIKAIAKLGLN--ASILAL-NRAVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCC---cChHH----HHHHHHHHhcCCC--eEEEEE-cccCHHHHHHHHhCCcCE
Confidence 6899999999999999999976665332 33333 3456666654333 344432 555688999999999998
Q ss_pred eccCccccc
Q 026651 210 FAHNIETVK 218 (235)
Q Consensus 210 ynHNLETs~ 218 (235)
++==+-+++
T Consensus 92 i~i~~~~Sd 100 (378)
T PRK11858 92 VHIFIATSD 100 (378)
T ss_pred EEEEEcCCH
Confidence 765444444
No 396
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=54.42 E-value=84 Score=28.39 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHH
Q 026651 132 DPMEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV 203 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~ 203 (235)
+.++..+.++.++++|+. +.+..+.+- ..+.+.+.++++.+..+ ..|-++-+.|.++++++..|.
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~~~~a~~~------~~~~~~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~lv 173 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFNLMAISGY------SDEELLELLELVNEIKP-DVFYIVDSFGSMYPEDIKRII 173 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEEEEeecCC------CHHHHHHHHHHHHhCCC-CEEEEecCCCCCCHHHHHHHH
Confidence 456666667777777764 344443321 13455666666654322 246666666777766665443
No 397
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=54.38 E-value=49 Score=27.59 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=37.7
Q ss_pred HHHHHcCCcEEEE----EeecCCCC-CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 141 KAIASWGVDYIVL----TSVDRDDI-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 141 ~aa~~~Gl~y~VV----TSg~RddL-~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
..+.+.|++|+.+ ++...++. +..+.+.+. .+++..++ +.+++..|. +.+.++.++++|.+.+
T Consensus 110 ~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~----~~~~~~~~--~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLR----EIAATSID--IPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHH----HHHHhcCC--CCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 3577789999765 33333221 222444444 44433333 345555455 8999999999999865
No 398
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=54.35 E-value=37 Score=30.02 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh-cCCCeec
Q 026651 136 PENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SGLDVFA 211 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e-AG~d~yn 211 (235)
+.+.-+...++|++ -|+|||-..... .+++.+.+.++.-+. .|++++.-|. +.+-+..|.+ +|+.-||
T Consensus 129 ~~~al~~L~~lG~~-rVLTSGg~~~a~-~g~~~L~~lv~~a~~-----~i~Im~GgGv-~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 129 PEEALEQLIELGFD-RVLTSGGAPTAL-EGIENLKELVEQAKG-----RIEIMPGGGV-RAENVPELVEETGVREIH 197 (201)
T ss_dssp HHHHHHHHHHHT-S-EEEESTTSSSTT-TCHHHHHHHHHHHTT-----SSEEEEESS---TTTHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHhcCCC-EEECCCCCCCHH-HHHHHHHHHHHHcCC-----CcEEEecCCC-CHHHHHHHHHhhCCeEEe
Confidence 33444466677766 578999775433 457777776654321 4787776655 6666666665 9999887
No 399
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=54.34 E-value=67 Score=30.80 Aligned_cols=78 Identities=24% Similarity=0.263 Sum_probs=55.0
Q ss_pred CCCchhHHHHHHHHHHcC-CcEEEEEeecCCC---CCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhc
Q 026651 130 PPDPMEPENTAKAIASWG-VDYIVLTSVDRDD---IPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~G-l~y~VVTSg~Rdd---L~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA 205 (235)
..+.+|..++|+..++.| +.|.=|+++.-.. ..-.+-..+....+.||... .+=+.+..++-+.++++.+++.
T Consensus 233 g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~---~~pvi~~G~i~~~~~Ae~~l~~ 309 (363)
T COG1902 233 GLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV---RIPVIAVGGINDPEQAEEILAS 309 (363)
T ss_pred CCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHc
Confidence 577889999999999999 6998888876531 11111335556666676642 3455666667899999999999
Q ss_pred C-CCee
Q 026651 206 G-LDVF 210 (235)
Q Consensus 206 G-~d~y 210 (235)
| +|.+
T Consensus 310 g~aDlV 315 (363)
T COG1902 310 GRADLV 315 (363)
T ss_pred CCCCEE
Confidence 8 5543
No 400
>PRK15452 putative protease; Provisional
Probab=54.25 E-value=99 Score=30.45 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHH-------------------HHhhCCCceEEEeecC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKA-------------------MKKQKPDIMVECLTSD 191 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~-------------------Ik~~~p~~~ievl~sd 191 (235)
.+.+++.+..+.+++.|++..| |.-+- ..+.+++.+.+.++. +|+..|++.|.+=++.
T Consensus 43 f~~edl~eav~~ah~~g~kvyv-t~n~i--~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke~~p~l~ih~stql 119 (443)
T PRK15452 43 FNHENLALGINEAHALGKKFYV-VVNIA--PHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVREHFPEMPIHLSVQA 119 (443)
T ss_pred CCHHHHHHHHHHHHHcCCEEEE-EecCc--CCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCCCeEEEEecc
Confidence 4567888888888899987322 22211 234556566555554 4444566666666666
Q ss_pred CCCCHHHHHHHHhcCCCee
Q 026651 192 FRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 192 g~l~~e~l~~L~eAG~d~y 210 (235)
-.-+..+++.+++.|++++
T Consensus 120 ni~N~~a~~f~~~lG~~rv 138 (443)
T PRK15452 120 NAVNWATVKFWQQMGLTRV 138 (443)
T ss_pred cCCCHHHHHHHHHCCCcEE
Confidence 6667777777777777654
No 401
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.17 E-value=52 Score=30.59 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+.|+.+.+.|++.+++- .-..+.+.++++.++... .+-+|-| ++.+.++.+++.|+|++.
T Consensus 205 eea~ea~~~gaDiI~LD--------n~s~e~l~~av~~~~~~~-----~leaSGG-I~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 205 DQLEEALELGVDAVLLD--------NMTPDTLREAVAIVAGRA-----ITEASGR-ITPETAPAIAASGVDLIS 264 (281)
T ss_pred HHHHHHHHcCCCEEEeC--------CCCHHHHHHHHHHhCCCc-----eEEEECC-CCHHHHHHHHhcCCCEEE
Confidence 45666778888877652 223567788888776433 2445544 599999999999999874
No 402
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=54.12 E-value=33 Score=30.26 Aligned_cols=59 Identities=17% Similarity=0.333 Sum_probs=37.3
Q ss_pred CcEEEEEeecCCCCCCCch-HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 148 VDYIVLTSVDRDDIPDGGS-GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 148 l~y~VVTSg~RddL~D~ga-~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
++++++.++.-+ ....-+ ....+-|+++|+..++. ++ .=||-.+.+.+..++++|+|.+
T Consensus 139 vD~Vl~m~v~pG-~~gq~~~~~~~~ki~~~~~~~~~~--~I-~VdGGI~~~ti~~~~~aGad~i 198 (228)
T PTZ00170 139 VDMVLVMTVEPG-FGGQSFMHDMMPKVRELRKRYPHL--NI-QVDGGINLETIDIAADAGANVI 198 (228)
T ss_pred hhhHHhhhcccC-CCCcEecHHHHHHHHHHHHhcccC--eE-EECCCCCHHHHHHHHHcCCCEE
Confidence 566666666521 111111 23456677777766643 33 3367789999999999999975
No 403
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=53.71 E-value=75 Score=28.42 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=53.8
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccccc
Q 026651 141 KAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL 220 (235)
Q Consensus 141 ~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rl 220 (235)
-.+...|+.|+=.=-||-||.-..|+..+.+..+.++...++ .++|+--|. +.+++-.+..+|.+.+-=..+..+.+
T Consensus 118 ~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~--tkILaAS~r-~~~~v~~~~~~G~d~vTip~~vl~~l 194 (220)
T PRK12655 118 LLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPE--SMVLAASFK-TPRQALDCLLAGCQSITLPLDVAQQM 194 (220)
T ss_pred HHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCCC--cEEEEEecC-CHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 455567888877766777666556788888888888765443 467766565 67777778889999875554444444
Q ss_pred c
Q 026651 221 Q 221 (235)
Q Consensus 221 f 221 (235)
+
T Consensus 195 ~ 195 (220)
T PRK12655 195 L 195 (220)
T ss_pred H
Confidence 3
No 404
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=53.61 E-value=66 Score=27.57 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
++++++. +++.+.+.+++.+++... .....+.+.|+.+|+..|.-.+.+++.-...+++-.+. -|.|.|
T Consensus 120 ~p~~~l~---~~~~~~~~d~v~lS~~~~-----~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~~~~~---~GaD~~ 188 (201)
T cd02070 120 VPPEEFV---EAVKEHKPDILGLSALMT-----TTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQEFADE---IGADGY 188 (201)
T ss_pred CCHHHHH---HHHHHcCCCEEEEecccc-----ccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHHHHHH---cCCcEE
Confidence 4445554 467777778766655432 23678899999999886622345555555556654444 499999
Q ss_pred ccCcccccc
Q 026651 211 AHNIETVKR 219 (235)
Q Consensus 211 nHNLETs~r 219 (235)
.=|-.++.+
T Consensus 189 ~~da~~av~ 197 (201)
T cd02070 189 AEDAAEAVA 197 (201)
T ss_pred ECCHHHHHH
Confidence 877665443
No 405
>PRK01060 endonuclease IV; Provisional
Probab=53.55 E-value=83 Score=27.60 Aligned_cols=72 Identities=8% Similarity=0.060 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCC-CC-CchHHHHHHHHHHHhhCCC--ceEEEeecCC--C-CCHHHHHHHHh
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDI-PD-GGSGHFARTVKAMKKQKPD--IMVECLTSDF--R-GDLRAVETLVH 204 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL-~D-~ga~~~a~~Ir~Ik~~~p~--~~ievl~sdg--~-l~~e~l~~L~e 204 (235)
.+...+..+.|+++|+.++|+.+|..... +. ...+.+++.+++|-+...+ +.||.+...+ + -+.+++.+|.+
T Consensus 88 ~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~~ 166 (281)
T PRK01060 88 RDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRFEELARIID 166 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCHHHHHHHHH
Confidence 45677888999999999999988864211 11 2456677777776433333 3456554332 2 25677766665
No 406
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=53.22 E-value=71 Score=29.24 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCcEEEEE--eecCCCCCCCchHHHH-----HHHHHHHhhCCCc-eEEEeecCCCCCHHHHHHHHhcCC
Q 026651 136 PENTAKAIASWGVDYIVLT--SVDRDDIPDGGSGHFA-----RTVKAMKKQKPDI-MVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVT--Sg~RddL~D~ga~~~a-----~~Ir~Ik~~~p~~-~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
..+.+++..+.|++.+.+- ++.. ++.+.+++|+ ++++.|++..|+. .+..|. ++...++.+++.|+
T Consensus 179 ~~~~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg----~~~~~~~~~~~~~~ 252 (335)
T cd00717 179 TIEYLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAK----GAGGLLEDLAQLGA 252 (335)
T ss_pred HHHHHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcC----CCHHHHHHHHhcCC
Confidence 4555777778899854442 3333 7777777776 4777777764332 345453 35688999999999
Q ss_pred Cee----ccCccccccccc
Q 026651 208 DVF----AHNIETVKRLQR 222 (235)
Q Consensus 208 d~y----nHNLETs~rlfp 222 (235)
+.+ +.+|+.+++.++
T Consensus 253 ~~~s~d~~~dl~e~k~~~g 271 (335)
T cd00717 253 DVVGLDWRVDLDEARKRLG 271 (335)
T ss_pred CEEEeCCCCCHHHHHHHhC
Confidence 995 456666666666
No 407
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=53.12 E-value=1.3e+02 Score=31.36 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=51.6
Q ss_pred CCCCCchhHHHH-------HHHHHHcCCcEEEEEee--------------cCCCCCCCc----hHHHHHHHHHHHhhCC-
Q 026651 128 PAPPDPMEPENT-------AKAIASWGVDYIVLTSV--------------DRDDIPDGG----SGHFARTVKAMKKQKP- 181 (235)
Q Consensus 128 p~~ld~eE~~~~-------A~aa~~~Gl~y~VVTSg--------------~RddL~D~g----a~~~a~~Ir~Ik~~~p- 181 (235)
|..++.+||.++ |+.+++.|.+.+=|-.+ +|.|---+. +....++|++||+..+
T Consensus 538 p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~ 617 (765)
T PRK08255 538 PREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPA 617 (765)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCC
Confidence 345777777644 88888899886555433 343311111 5678899999998753
Q ss_pred CceEEEeec--CC---CCCH----HHHHHHHhcCCCeec
Q 026651 182 DIMVECLTS--DF---RGDL----RAVETLVHSGLDVFA 211 (235)
Q Consensus 182 ~~~ievl~s--dg---~l~~----e~l~~L~eAG~d~yn 211 (235)
+.-|.+=++ ++ -.+. +-++.|.++|+|.++
T Consensus 618 ~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~ 656 (765)
T PRK08255 618 EKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLID 656 (765)
T ss_pred CCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 333444344 22 1232 344788899999876
No 408
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=53.00 E-value=57 Score=29.54 Aligned_cols=67 Identities=24% Similarity=0.240 Sum_probs=40.0
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCC-------------CchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 140 AKAIASWGVDYIVLTSVDRDDIPD-------------GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 140 A~aa~~~Gl~y~VVTSg~RddL~D-------------~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
|..+.+.|..|+=.--||=||.-+ .|+..+.++.+.+++....+.| ++--+. +..++..|. |
T Consensus 153 a~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tki--L~AS~r-~~~~v~~l~--G 227 (252)
T cd00439 153 YEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRV--LWASFS-DTLYVAPLI--G 227 (252)
T ss_pred HHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeE--EEEeeC-CHHHHHHhh--C
Confidence 444444555554444444444444 6788888888888776655544 444344 677777766 8
Q ss_pred CCeec
Q 026651 207 LDVFA 211 (235)
Q Consensus 207 ~d~yn 211 (235)
++.+.
T Consensus 228 ~d~vT 232 (252)
T cd00439 228 CDTVT 232 (252)
T ss_pred CCeee
Confidence 87654
No 409
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.83 E-value=13 Score=34.16 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCCCchhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC----HHHHHHH
Q 026651 129 APPDPMEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETL 202 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~----~e~l~~L 202 (235)
..+|.+...+..+...+.|++ ++.-|+|--..|+++|-.++.+.+.+.-.. .+-+.+.-+-.+ .+.++..
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g----rvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG----RVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC----CCCEEEEeccCCHHHHHHHHHHH
Confidence 358999999999999999998 344588887778887777777655443221 122333333222 3444556
Q ss_pred HhcCCC--------eeccCccccccccccccC
Q 026651 203 VHSGLD--------VFAHNIETVKRLQRIVRD 226 (235)
Q Consensus 203 ~eAG~d--------~ynHNLETs~rlfp~Vcd 226 (235)
.++|+| .|.-+=|-.-.||..|++
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~ 131 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDVDTAVQFYRDVAE 131 (309)
T ss_pred HHhCCCEEEECCCcCCCCCHHHHHHHHHHHHH
Confidence 677877 344455777888888874
No 410
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=52.49 E-value=53 Score=29.97 Aligned_cols=71 Identities=15% Similarity=0.035 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~-~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
.++++..+.++.+.+.|++...++-+-- ..+.....+.+++|++..+. +.+. +..+.+.++++.++|+|.
T Consensus 126 ~~~~~~~~~i~~~~~~g~~~i~l~~~~p----~~~~~~~~~~i~~l~~~~~~pvivK-----~v~s~~~a~~a~~~G~d~ 196 (299)
T cd02809 126 RDREITEDLLRRAEAAGYKALVLTVDTP----VLGRRLTWDDLAWLRSQWKGPLILK-----GILTPEDALRAVDAGADG 196 (299)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC----CCCCCCCHHHHHHHHHhcCCCEEEe-----ecCCHHHHHHHHHCCCCE
Confidence 3778888888999999998777765421 11111345778888876421 2222 235789999999999986
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 197 I 197 (299)
T cd02809 197 I 197 (299)
T ss_pred E
Confidence 5
No 411
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=52.38 E-value=1.1e+02 Score=28.56 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHcCCcEEEE-Ee--ecCCCCCCCch-HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCC
Q 026651 132 DPMEPENTAKAIASWGVDYIVL-TS--VDRDDIPDGGS-GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VV-TS--g~RddL~D~ga-~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
++++..+.|+.+++.|+++..+ .| ..+.++..... +.+.+.++++++...---+==+.|++---.+-++.+.++|+
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGA 189 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCC
Q ss_pred Cee
Q 026651 208 DVF 210 (235)
Q Consensus 208 d~y 210 (235)
+-+
T Consensus 190 dgi 192 (325)
T cd04739 190 DGL 192 (325)
T ss_pred CeE
No 412
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=52.25 E-value=76 Score=28.92 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCcEEEEEe-ecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 138 NTAKAIASWGVDYIVLTS-VDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTS-g~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+.|+.+.+.|++.++|+- |.+ ..+.+... .+.+.++++..+. .+.++++-|.-+...+.+....|.+-+
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~--~~~~g~~~-~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal~lGAd~V 253 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGR--QLDGAPAT-IDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKALALGADAV 253 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCC--CCCCCcCH-HHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 558899999999877743 212 12333333 3445555554321 478999999999888888888998843
No 413
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=52.20 E-value=39 Score=34.74 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
.+.+.+.++.+.|...+||-|-+.+. .+...++.++||+..+ ..-+|+ |.+..++.+.++|+|-|=|
T Consensus 534 ~~~~~~~a~~~sga~i~viCssD~~Y-----~~~a~~~~~al~~ag~--~~v~lA----G~p~~~~~~~~aGvd~fi~ 600 (619)
T TIGR00642 534 TAEIVVEAFKKAGAQVAVLCSSDKVY-----AQQGLEVAKALKAAGA--KALYLA----GAFKEFGDDAAEAIDGRLF 600 (619)
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCcch-----HHHHHHHHHHHHhCCC--CEEEEe----CCCcchhhHHhcCCcceeE
Confidence 34577888889999999998876543 4566788888887655 234454 2333365699999998865
No 414
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=52.11 E-value=44 Score=31.18 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCC--CCCCC---ch-HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRD--DIPDG---GS-GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~Rd--dL~D~---ga-~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
.++..+.++.+.+.|++...|++.++. .+... .. .-..+.+++|++..+ ++-|+++.|.-+.+.++++.+ |
T Consensus 150 ~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~iPVI~nGgI~s~eda~~~l~-~ 226 (333)
T PRK11815 150 YEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP--HLTIEINGGIKTLEEAKEHLQ-H 226 (333)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC--CCeEEEECCcCCHHHHHHHHh-c
Confidence 356778899999999999999865431 01100 00 011355667777544 467889999999999988886 4
Q ss_pred CC
Q 026651 207 LD 208 (235)
Q Consensus 207 ~d 208 (235)
+|
T Consensus 227 aD 228 (333)
T PRK11815 227 VD 228 (333)
T ss_pred CC
Confidence 44
No 415
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=52.08 E-value=74 Score=28.28 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
++..+.|+.+.+.|++..-+..+.. ...+ . .+.|++++ ..+-+.+..+.-+.++++++.+.|.|-+
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~----g~~a-d-~~~I~~i~-----~~ipVIgnGgI~s~eda~~~l~~GaD~V 217 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDP----GNHA-D-LKKIRDIS-----TELFIIGNNSVTTIESAKEMFSYGADMV 217 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCC----CCCC-c-HHHHHHhc-----CCCEEEEECCcCCHHHHHHHHHcCCCEE
Confidence 6788999999999999644432221 1111 1 13444444 2577899999999999999999998754
No 416
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=52.04 E-value=50 Score=30.63 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=49.8
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEE-eecCCCC----CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLT-SVDRDDI----PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVT-Sg~RddL----~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
..+.+++++.|+.-.+.|++..=|= --+|++. +++|++++..+|++|++.. ++- +|.=.-+.+-++.-.+
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~----ISIDT~~~~va~~AL~ 108 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVW----ISVDTSKPEVIRESAK 108 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCe----EEEECCCHHHHHHHHH
Confidence 4689999999999999999865442 1112222 2347778888999998643 222 2222336677777777
Q ss_pred cCCCeec
Q 026651 205 SGLDVFA 211 (235)
Q Consensus 205 AG~d~yn 211 (235)
+|++.+|
T Consensus 109 ~GadiIN 115 (282)
T PRK11613 109 AGAHIIN 115 (282)
T ss_pred cCCCEEE
Confidence 7777764
No 417
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=51.95 E-value=43 Score=31.86 Aligned_cols=74 Identities=20% Similarity=0.029 Sum_probs=46.3
Q ss_pred CCchhHHHHHHHHHHcCCcE-EEE-EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEe--ecCCCCCHHHHHHHHhcC
Q 026651 131 PDPMEPENTAKAIASWGVDY-IVL-TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL--TSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y-~VV-TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl--~sdg~l~~e~l~~L~eAG 206 (235)
.|++...+.++++.+.|++. ++. |.|.- .| ..+.+.|+.+++.. ++.|++- --.|+...-.+..+ +||
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~--~P----~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv-~aG 213 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTVGIL--DP----FTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGI-EAG 213 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCC--CH----HHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHH-HcC
Confidence 57888889999999999874 333 55543 23 46777777887664 3334443 34455444455444 688
Q ss_pred CCeecc
Q 026651 207 LDVFAH 212 (235)
Q Consensus 207 ~d~ynH 212 (235)
+++++-
T Consensus 214 a~~vd~ 219 (378)
T PRK11858 214 AKQVHT 219 (378)
T ss_pred CCEEEE
Confidence 877653
No 418
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=51.86 E-value=59 Score=28.95 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCcEEEEEeecC----CCCCCCchHHHHHHHHHHHhh--CCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 138 NTAKAIASWGVDYIVLTSVDR----DDIPDGGSGHFARTVKAMKKQ--KPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~R----ddL~D~ga~~~a~~Ir~Ik~~--~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+.|+.+.++|++|+.+=.+-- ++.+..|.+.+. .+++. .| ++-.|-++.+.+..++++|++.+.
T Consensus 115 eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~----~~~~~~~iP------~vAIGGi~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 115 EEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLR----EIRELVNIP------VVAIGGINLENVPEVLEAGADGVA 184 (211)
T ss_pred HHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHH----HHHHhCCCC------EEEEcCCCHHHHHHHHHhCCCeEE
Confidence 446678888999987744332 233445555555 34332 34 444577799999999999998653
No 419
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=51.72 E-value=1.1e+02 Score=28.34 Aligned_cols=84 Identities=18% Similarity=0.115 Sum_probs=49.9
Q ss_pred CCCCCchhHHHH-------HHHHHHcCCcEEEEEe--------------ecCCCCC----CCchHHHHHHHHHHHhhC-C
Q 026651 128 PAPPDPMEPENT-------AKAIASWGVDYIVLTS--------------VDRDDIP----DGGSGHFARTVKAMKKQK-P 181 (235)
Q Consensus 128 p~~ld~eE~~~~-------A~aa~~~Gl~y~VVTS--------------g~RddL~----D~ga~~~a~~Ir~Ik~~~-p 181 (235)
|..++.+|+.++ |+.+++.|.+-+=|-. -+|.|-- +.-.+...++|++||+.. |
T Consensus 141 p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~ 220 (336)
T cd02932 141 PRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPE 220 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 345787777544 7888888887544432 1232210 123566789999999876 3
Q ss_pred CceEEEeec------CCCCCH---HHHHHHHhcCCCeec
Q 026651 182 DIMVECLTS------DFRGDL---RAVETLVHSGLDVFA 211 (235)
Q Consensus 182 ~~~ievl~s------dg~l~~---e~l~~L~eAG~d~yn 211 (235)
+..|.+=.+ .|.--+ +-++.|.++|+|.++
T Consensus 221 d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~ie 259 (336)
T cd02932 221 DKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLID 259 (336)
T ss_pred CceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 544555333 333222 234577888999887
No 420
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=51.60 E-value=61 Score=29.62 Aligned_cols=68 Identities=25% Similarity=0.271 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 133 PMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
...|.+.|+.-.+.|+. .+|+|=.+. =.|. .+-++.+++.. .+=+|.-||+.++.|+..-+.+|.|.+
T Consensus 67 ~~d~~~~a~~y~~~GA~aiSVlTe~~~---F~Gs----~~dL~~v~~~~---~~PvL~KDFIid~~QI~eA~~~GADaV 135 (254)
T PF00218_consen 67 DFDPAEIAKAYEEAGAAAISVLTEPKF---FGGS----LEDLRAVRKAV---DLPVLRKDFIIDPYQIYEARAAGADAV 135 (254)
T ss_dssp S-SHHHHHHHHHHTT-SEEEEE--SCC---CHHH----HHHHHHHHHHS---SS-EEEES---SHHHHHHHHHTT-SEE
T ss_pred cCCHHHHHHHHHhcCCCEEEEECCCCC---CCCC----HHHHHHHHHHh---CCCcccccCCCCHHHHHHHHHcCCCEe
Confidence 34778889999999998 799886643 1122 23334444432 456788999999999999999999875
No 421
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=51.52 E-value=62 Score=29.98 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+.|+.+.+.|++.+++++...+.-. +... --..++++++.. ++-+.+.-|..+.+.+......|.+-+
T Consensus 120 ~~a~~a~~~GaD~Ivv~g~eagGh~-g~~~-~~~ll~~v~~~~---~iPviaaGGI~~~~~~~~al~~GA~gV 187 (307)
T TIGR03151 120 ALAKRMEKAGADAVIAEGMESGGHI-GELT-TMALVPQVVDAV---SIPVIAAGGIADGRGMAAAFALGAEAV 187 (307)
T ss_pred HHHHHHHHcCCCEEEEECcccCCCC-CCCc-HHHHHHHHHHHh---CCCEEEECCCCCHHHHHHHHHcCCCEe
Confidence 4578888999999988775332111 1111 234555565543 366889999999998888888998743
No 422
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=51.47 E-value=83 Score=29.15 Aligned_cols=75 Identities=19% Similarity=0.030 Sum_probs=49.9
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCC------------c---hHHHHHHHHHHHhhCCCceEEEeecCCCCCH
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG------------G---SGHFARTVKAMKKQKPDIMVECLTSDFRGDL 196 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~------------g---a~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~ 196 (235)
+.+++.+.|+.+++.|++.++++......--|- + .....+.|+++++.. .+.+.++-|.-+.
T Consensus 175 ~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~---~ipIig~GGI~s~ 251 (334)
T PRK07565 175 YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV---GADLAATTGVHDA 251 (334)
T ss_pred CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc---CCCEEEECCCCCH
Confidence 445788999999999999876643321100110 0 112345666776643 5788999999998
Q ss_pred HHHHHHHhcCCCe
Q 026651 197 RAVETLVHSGLDV 209 (235)
Q Consensus 197 e~l~~L~eAG~d~ 209 (235)
+.+.+...+|.+.
T Consensus 252 ~Da~e~l~aGA~~ 264 (334)
T PRK07565 252 EDVIKMLLAGADV 264 (334)
T ss_pred HHHHHHHHcCCCc
Confidence 8888887899864
No 423
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=51.07 E-value=54 Score=33.97 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=50.1
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCC--CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDI--PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL--~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG 206 (235)
-++.+|.+++|+..++.|++|+-|++|+.... +..+-.......++||+.. ++=|.+.-++-+.+.++++.+.|
T Consensus 634 g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 634 GNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEA---GIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHc---CCEEEEeCCCCCHHHHHHHHHcC
Confidence 46778999999999999999999988864211 0111112234456777643 45567777777888888888766
No 424
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=50.99 E-value=72 Score=32.49 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCC-CceEEEeecCCCCCHHHHHHHHhcCC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
.+.+...+.|+++.++|++...+ |.|-- .| ..+.+.|++||+..+ .+.++.---.|+...-.+ .-.+||+
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~--~P----~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~l-aAveaGa 218 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKDMAGIL--TP----KAAYELVSALKKRFGLPVHLHSHATTGMAEMALL-KAIEAGA 218 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCc--CH----HHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHH-HHHHhCC
Confidence 57889999999999999985444 67653 23 478888888888764 134444445555444444 3458888
Q ss_pred CeeccC
Q 026651 208 DVFAHN 213 (235)
Q Consensus 208 d~ynHN 213 (235)
+.++--
T Consensus 219 ~~vd~a 224 (582)
T TIGR01108 219 DGIDTA 224 (582)
T ss_pred CEEEec
Confidence 887643
No 425
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=50.96 E-value=75 Score=27.46 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCC--CCHHH----HHHHHh
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--GDLRA----VETLVH 204 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~--l~~e~----l~~L~e 204 (235)
++.+++.+.++.+.+.|++|+-+.-... .+.++++.+..| +-++++-|. .+.++ ++.+++
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~-----------~~~~~~i~~~~~---~pvv~~GG~~~~~~~~~l~~~~~~~~ 205 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGD-----------AESFKEVVEGCP---VPVVIAGGPKKDSEEEFLKMVYDAME 205 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCC-----------HHHHHHHHhcCC---CCEEEeCCCCCCCHHHHHHHHHHHHH
Q ss_pred cCCCee
Q 026651 205 SGLDVF 210 (235)
Q Consensus 205 AG~d~y 210 (235)
+|++.+
T Consensus 206 ~Ga~gv 211 (235)
T cd00958 206 AGAAGV 211 (235)
T ss_pred cCCcEE
No 426
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.95 E-value=86 Score=28.06 Aligned_cols=87 Identities=9% Similarity=0.090 Sum_probs=52.6
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCC-CCCchHHHHHHHHHHHhhCCC--ceEEEeecCC--CC-CHHHHHHHHh
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDI-PDGGSGHFARTVKAMKKQKPD--IMVECLTSDF--RG-DLRAVETLVH 204 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL-~D~ga~~~a~~Ir~Ik~~~p~--~~ievl~sdg--~l-~~e~l~~L~e 204 (235)
...+...+..+.++.+|++++|+.+|...+. .+...+.+.+.++.+-+...+ +.||-+...+ ++ +.+++..|.+
T Consensus 85 ~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~ 164 (274)
T TIGR00587 85 KSLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIK 164 (274)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHH
Confidence 3346677889999999999999998875322 223456777777776543322 2345443222 23 7888888876
Q ss_pred c-C-CCeeccCcccc
Q 026651 205 S-G-LDVFAHNIETV 217 (235)
Q Consensus 205 A-G-~d~ynHNLETs 217 (235)
. + .+++.-.|.|.
T Consensus 165 ~~~~~~~lg~~lDt~ 179 (274)
T TIGR00587 165 VIVDKRRIGVCLDTC 179 (274)
T ss_pred hcCCCCceEEEEEhh
Confidence 3 3 24444444443
No 427
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=50.63 E-value=45 Score=33.48 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=48.0
Q ss_pred CCchhHHHHHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCCc--eEEEeecCCCCCHHHHHHHHhcC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~--~ievl~sdg~l~~e~l~~L~eAG 206 (235)
.+++...++++++.+.|++...+ |-|.- +| ..+.+.|+.|++..|.. .++.---.|+.....+.. .+||
T Consensus 151 ~~~~~l~~~~~~a~~aGad~i~i~DTvG~~--~P----~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaA-v~AG 223 (526)
T TIGR00977 151 ANPEYALATLATAQQAGADWLVLCDTNGGT--LP----HEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLA-VEAG 223 (526)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCc--CH----HHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHH-HHhC
Confidence 57888889999999999885444 44432 34 47788888888776543 444444445544444444 4778
Q ss_pred CCeecc
Q 026651 207 LDVFAH 212 (235)
Q Consensus 207 ~d~ynH 212 (235)
+++++-
T Consensus 224 A~~Vd~ 229 (526)
T TIGR00977 224 ATMVQG 229 (526)
T ss_pred CCEEEE
Confidence 877653
No 428
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=50.33 E-value=35 Score=31.63 Aligned_cols=39 Identities=10% Similarity=0.318 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 168 ~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
-|.+.|+++|+..|+..|+|=+. +.|+++..+++|+|++
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~----tleea~ea~~~GaDiI 212 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD----TIEQALTVLQASPDIL 212 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC----CHHHHHHHHHcCcCEE
Confidence 57788999998877655555543 8999999999999976
No 429
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=50.06 E-value=45 Score=30.84 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCC---Cce-EEEeecCCCC------CHHHHHHH
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKP---DIM-VECLTSDFRG------DLRAVETL 202 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p---~~~-ievl~sdg~l------~~e~l~~L 202 (235)
+.|....|..|+..|++--|+--++.++- .+.+...-..+.+||...| .-. .++.-|+|.- ..|+++.+
T Consensus 82 ~a~a~~la~yA~acGA~aLvlcPlNd~s~-~~~~vr~~~lv~AlkaLkpil~~~gi~GLVEPLGF~~csLRsk~eA~~aI 160 (272)
T COG4130 82 VAEARGLADYAAACGAKALVLCPLNDGSW-PGTAVRREDLVEALKALKPILDEYGITGLVEPLGFRVCSLRSKAEAAEAI 160 (272)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCCC-CCcccchHHHHHHHHHhhHHHHHhCccccccccCchhhhhhhHHHHHHHH
Confidence 35666778899999998544443332221 2344444555555554322 111 2444455542 46777777
Q ss_pred HhcCC--------CeeccCcccccccccccc
Q 026651 203 VHSGL--------DVFAHNIETVKRLQRIVR 225 (235)
Q Consensus 203 ~eAG~--------d~ynHNLETs~rlfp~Vc 225 (235)
.++|= |.|||.|+-=..|||.+-
T Consensus 161 ~aa~g~~~fklvhDTFHHhLagE~~ffpdlT 191 (272)
T COG4130 161 RAAGGERVFKLVHDTFHHHLAGETEFFPDLT 191 (272)
T ss_pred HHhCCCceeeeehhhhhhhhcccceeccccc
Confidence 77763 579999998888998753
No 430
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=50.02 E-value=35 Score=32.01 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 169 FARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 169 ~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+.+.|+++|+..|...|||-+. +.|++.+.+++|+|++
T Consensus 195 i~~av~~~r~~~~~~kIeVEv~----sleea~ea~~~gaDiI 232 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEVEVE----NLDELDQALKAGADII 232 (296)
T ss_pred HHHHHHHHHHhCCCCCEEEEeC----CHHHHHHHHHcCCCEE
Confidence 6788888888877767777765 7899999999999987
No 431
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=49.87 E-value=93 Score=29.21 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=50.0
Q ss_pred CchhHHHHHHHHHHcCCcEEEEE--eecCCCCCC-------C------chHHHHHHHHHHHhhCCCceEEEeecCCCCCH
Q 026651 132 DPMEPENTAKAIASWGVDYIVLT--SVDRDDIPD-------G------GSGHFARTVKAMKKQKPDIMVECLTSDFRGDL 196 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVT--Sg~RddL~D-------~------ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~ 196 (235)
+.+++.+.|+++.+.|++-++++ ...++-+.. + ....-.+.|+.+++..+ -.+-+.+.-|.-+.
T Consensus 222 ~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~-~~ipiig~GGI~~~ 300 (335)
T TIGR01036 222 TESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQ-GRLPIIGVGGISSA 300 (335)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhC-CCCCEEEECCCCCH
Confidence 33479999999999999955442 222211110 0 11233456666665443 13678889999999
Q ss_pred HHHHHHHhcCCCe
Q 026651 197 RAVETLVHSGLDV 209 (235)
Q Consensus 197 e~l~~L~eAG~d~ 209 (235)
+++.+...||.+.
T Consensus 301 ~da~e~l~aGA~~ 313 (335)
T TIGR01036 301 QDALEKIRAGASL 313 (335)
T ss_pred HHHHHHHHcCCcH
Confidence 9999999999864
No 432
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=49.80 E-value=75 Score=26.78 Aligned_cols=77 Identities=23% Similarity=0.111 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCH--HHHHHHHhcCC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL--RAVETLVHSGL 207 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~--e~l~~L~eAG~ 207 (235)
..+.++..+.++++ +.|++.+=|++.-. . ..+ .+.|+.||+..|+..+-+=.- ..+. .++++++++|.
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev~~~l~--~-~~g----~~~i~~l~~~~~~~~i~~d~k--~~d~~~~~~~~~~~~Ga 77 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEIGTPLI--K-NEG----IEAVKEMKEAFPDRKVLADLK--TMDAGEYEAEQAFAAGA 77 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEeCCHHH--H-HhC----HHHHHHHHHHCCCCEEEEEEe--eccchHHHHHHHHHcCC
Confidence 36788999999988 77877544432211 1 111 567888888766433321110 1132 37999999999
Q ss_pred CeeccCccc
Q 026651 208 DVFAHNIET 216 (235)
Q Consensus 208 d~ynHNLET 216 (235)
|.+.=..|+
T Consensus 78 d~i~vh~~~ 86 (206)
T TIGR03128 78 DIVTVLGVA 86 (206)
T ss_pred CEEEEeccC
Confidence 988544554
No 433
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=49.54 E-value=68 Score=26.73 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEE-eecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLT-SVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLD 208 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVT-Sg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d 208 (235)
..+.++..+.+++..+. ++..=++ +..+ ..| .+.|+.||+..|+..+-+-.-.-......++.++++|++
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~~ieig~~~~~----~~g----~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad 79 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VDIIEAGTPLIK----SEG----MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGAD 79 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CCEEEcCCHHHH----HhC----HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCC
Confidence 35678888999998887 7754332 2221 112 567788887656544332111111123467889999999
Q ss_pred eeccCcc
Q 026651 209 VFAHNIE 215 (235)
Q Consensus 209 ~ynHNLE 215 (235)
.+.=.-|
T Consensus 80 ~i~~h~~ 86 (202)
T cd04726 80 IVTVLGA 86 (202)
T ss_pred EEEEEee
Confidence 8883333
No 434
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=49.53 E-value=81 Score=30.21 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhC-CCceEEEeecCCCCCHHHHHHHHhcC--CCeec
Q 026651 167 GHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSG--LDVFA 211 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~-p~~~ievl~sdg~l~~e~l~~L~eAG--~d~yn 211 (235)
+.+.++.+.+.+.. | .+.+.+|-|+ +++.++.+.++| +|.|.
T Consensus 264 ~l~~~vr~~Ld~~g~~--~vkI~aSgGi-ne~~I~~~~~~g~piD~~G 308 (352)
T PRK07188 264 ELIKALRKALDENGGK--HVKIIVSSGF-DAKKIREFEAQNVPVDIYG 308 (352)
T ss_pred HHHHHHHHHHhhCCCC--CcEEEEeCCC-CHHHHHHHHHcCCCccEEe
Confidence 33444444444433 5 5677888776 999999999999 57764
No 435
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=49.33 E-value=93 Score=26.79 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHcCCcE--EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHH
Q 026651 133 PMEPENTAKAIASWGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV 203 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y--~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~ 203 (235)
.+.+.+.++.++++|... ++..+. + -..+.+.+.++++.+..++ .|.++-+.|.++++++..|.
T Consensus 107 ~~~~~~~v~~ak~~g~~v~~~~~~~~-~-----~~~~~~~~~~~~~~~~g~~-~i~l~Dt~G~~~P~~v~~lv 172 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEVAFGCEDAS-R-----TDPEELLELAEALAEAGAD-IIYLADTVGIMTPEDVAELV 172 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTTG-G-----SSHHHHHHHHHHHHHHT-S-EEEEEETTS-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEeCccccc-c-----ccHHHHHHHHHHHHHcCCe-EEEeeCccCCcCHHHHHHHH
Confidence 356667788889999873 332333 2 2256788888888776554 48889999999988876554
No 436
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=49.24 E-value=28 Score=31.41 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=60.7
Q ss_pred CCCchhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC----HHHHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD----LRAVETLV 203 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~----~e~l~~L~ 203 (235)
-+|.+...+..+...+.|++ ++.-|+|-...|+++|-.++.+.+.+.-+. .+.+++.-+-.+ -+.++...
T Consensus 15 ~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~----~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 15 SVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG----RVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC----CCeEEEeCCCccHHHHHHHHHHHH
Confidence 58999999999999999998 334488888788887777777654443221 233444444333 34556777
Q ss_pred hcCCCee--------ccCccccccccccccC
Q 026651 204 HSGLDVF--------AHNIETVKRLQRIVRD 226 (235)
Q Consensus 204 eAG~d~y--------nHNLETs~rlfp~Vcd 226 (235)
++|+|.+ ...=+..-+||..|++
T Consensus 91 ~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 91 DVGADGFLVVTPYYNKPTQEGLYQHFKAIAE 121 (285)
T ss_pred HcCCCEEEEcCCcCCCCCHHHHHHHHHHHHh
Confidence 8888742 2234666677777763
No 437
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=49.22 E-value=1.2e+02 Score=28.00 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=45.7
Q ss_pred CchhHHHHHHHHHHcCCcEEEE-E---eecCCCCCCCch-HHHHHHHHHHHhhCCCceEEEeecCCCCC-HHHHHHHHhc
Q 026651 132 DPMEPENTAKAIASWGVDYIVL-T---SVDRDDIPDGGS-GHFARTVKAMKKQKPDIMVECLTSDFRGD-LRAVETLVHS 205 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VV-T---Sg~RddL~D~ga-~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~-~e~l~~L~eA 205 (235)
+.+|..+.|+.+++.|+++.-+ . -++. +...... +++.+.+++|++... +-|-+=.+.+..+ .+.++.|.++
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~-~~~g~~~~~~~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~ 189 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDP-DISGAEVEQRYLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAA 189 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC-CCccccHHHHHHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHc
Confidence 3568889999999999886555 1 1221 1222222 457889999987531 1122222223322 5667889999
Q ss_pred CCCee
Q 026651 206 GLDVF 210 (235)
Q Consensus 206 G~d~y 210 (235)
|+|-+
T Consensus 190 G~dgI 194 (334)
T PRK07565 190 GADGL 194 (334)
T ss_pred CCCeE
Confidence 99854
No 438
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=49.17 E-value=1.1e+02 Score=28.96 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=60.0
Q ss_pred CchhHHHHHHHHHHcCCcEEEE--EeecCC--CCCC---------Cc------hHHHHHHHHHHHhhCCCceEEEeecCC
Q 026651 132 DPMEPENTAKAIASWGVDYIVL--TSVDRD--DIPD---------GG------SGHFARTVKAMKKQKPDIMVECLTSDF 192 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VV--TSg~Rd--dL~D---------~g------a~~~a~~Ir~Ik~~~p~~~ievl~sdg 192 (235)
+.+++.++|+++.+.|++.+++ |...|+ |+.- +| ...-.+.|+++.+... ..+-+...-|
T Consensus 171 ~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~-~~ipIIGvGG 249 (310)
T COG0167 171 NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLG-GDIPIIGVGG 249 (310)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcC-CCCcEEEecC
Confidence 7899999999999999996555 444343 1111 11 1234566777766532 2578888999
Q ss_pred CCCHHHHHHHHhcCCC---eeccCccccccccccc
Q 026651 193 RGDLRAVETLVHSGLD---VFAHNIETVKRLQRIV 224 (235)
Q Consensus 193 ~l~~e~l~~L~eAG~d---~ynHNLETs~rlfp~V 224 (235)
.-+.+.+-+...||.+ +|.=++.=-+.++++|
T Consensus 250 I~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I 284 (310)
T COG0167 250 IETGEDALEFILAGASAVQVGTALIYKGPGIVKEI 284 (310)
T ss_pred cCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHH
Confidence 9998888888888864 5555554444444443
No 439
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=49.14 E-value=91 Score=27.45 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=52.0
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCC----------------CCC--C---------CchHHHHHHHHHHHhhCCC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRD----------------DIP--D---------GGSGHFARTVKAMKKQKPD 182 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd----------------dL~--D---------~ga~~~a~~Ir~Ik~~~p~ 182 (235)
.+-++-+.++++++++.|+.-++.|+|.-+ |++ | ...+.+.+.++.+.+....
T Consensus 50 llq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~ 129 (213)
T PRK10076 50 LMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVN 129 (213)
T ss_pred HcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCc
Confidence 455666889999999999999999999543 121 1 1234566777777665333
Q ss_pred ceEE-EeecCCCCCHHHHHHHH----hcCCCeec
Q 026651 183 IMVE-CLTSDFRGDLRAVETLV----HSGLDVFA 211 (235)
Q Consensus 183 ~~ie-vl~sdg~l~~e~l~~L~----eAG~d~yn 211 (235)
+.|. +++|.+.-++|.++.++ +-+++.||
T Consensus 130 v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~ 163 (213)
T PRK10076 130 VIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIH 163 (213)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 3222 35777777777665554 44555554
No 440
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=49.13 E-value=14 Score=35.85 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=46.4
Q ss_pred CCchHHHHHHHHHHHhhCCCceEEEe-------ec-----------CCCCCHHHHHHHHhcCCCeec--cCccccccccc
Q 026651 163 DGGSGHFARTVKAMKKQKPDIMVECL-------TS-----------DFRGDLRAVETLVHSGLDVFA--HNIETVKRLQR 222 (235)
Q Consensus 163 D~ga~~~a~~Ir~Ik~~~p~~~ievl-------~s-----------dg~l~~e~l~~L~eAG~d~yn--HNLETs~rlfp 222 (235)
|+++-.-..+|+++|+++|+..||.= -= -|+--.+|+..+.+||+++|. .|.+||.++--
T Consensus 218 d~Df~atL~AvE~Lr~~fP~m~IE~GMAgE~vLGMHG~leYdg~~LAGL~PHqQa~l~~kAGanvFGPVvNtntS~t~~W 297 (466)
T PF09505_consen 218 DGDFYATLKAVEALRKKFPNMYIEMGMAGEFVLGMHGELEYDGVTLAGLWPHQQAPLAEKAGANVFGPVVNTNTSKTSPW 297 (466)
T ss_pred ChhHHHHHHHHHHHHHhCcceeEecccccceeeecccceeECCEeeeccCcccccchHHhcCcceecceecCCCccccch
Confidence 34466667889999999999888752 11 122347899999999999997 58888888766
Q ss_pred ccc
Q 026651 223 IVR 225 (235)
Q Consensus 223 ~Vc 225 (235)
++-
T Consensus 298 Nla 300 (466)
T PF09505_consen 298 NLA 300 (466)
T ss_pred HHH
Confidence 654
No 441
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=49.09 E-value=84 Score=29.26 Aligned_cols=70 Identities=21% Similarity=0.185 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCcEEEEEeecCC------------CC--------CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCH
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRD------------DI--------PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDL 196 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~Rd------------dL--------~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~ 196 (235)
.+.|+...+.|+++++| ||.+. +. .+-+.. .++.+..+++..+ .+.+.++-|.-+.
T Consensus 192 ~~~a~~l~~~Gvd~I~v-sG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~-t~~~l~~~~~~~~--~ipIiasGGIr~~ 267 (326)
T cd02811 192 RETAKRLADAGVKAIDV-AGAGGTSWARVENYRAKDSDQRLAEYFADWGIP-TAASLLEVRSALP--DLPLIASGGIRNG 267 (326)
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCCccccccccccccccccccccccccccc-HHHHHHHHHHHcC--CCcEEEECCCCCH
Confidence 57788899999999888 44211 10 111221 2456666666544 5789999999999
Q ss_pred HHHHHHHhcCCCee
Q 026651 197 RAVETLVHSGLDVF 210 (235)
Q Consensus 197 e~l~~L~eAG~d~y 210 (235)
+.+.+...+|.+.+
T Consensus 268 ~dv~kal~lGAd~V 281 (326)
T cd02811 268 LDIAKALALGADLV 281 (326)
T ss_pred HHHHHHHHhCCCEE
Confidence 99999998998754
No 442
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.94 E-value=38 Score=31.64 Aligned_cols=49 Identities=12% Similarity=0.304 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee---ccCccccccc
Q 026651 168 HFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF---AHNIETVKRL 220 (235)
Q Consensus 168 ~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y---nHNLETs~rl 220 (235)
-+.+.|+++|+..|+..|||-+. +.+++....++|+|++ |-+.|+++..
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv~----tl~ea~eal~~gaDiI~LDnm~~e~vk~a 236 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEVD----SLEQLDEVLAEGAELVLLDNFPVWQTQEA 236 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcC----CHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 45678888888777767777764 7789999999999987 4444544443
No 443
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=48.80 E-value=1.6e+02 Score=25.03 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCC-cEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeec-----------------CCCCCHH
Q 026651 136 PENTAKAIASWGV-DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTS-----------------DFRGDLR 197 (235)
Q Consensus 136 ~~~~A~aa~~~Gl-~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~s-----------------dg~l~~e 197 (235)
..++++..++.|. +.++|+|.+ .+.++.+++..|+..+..+.+ ...++.+
T Consensus 114 ~~~v~~~l~~~~~~~~v~v~Sf~------------~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (220)
T cd08579 114 VEKFVKLYKQNLIENQHQVHSLD------------YRVIEKVKKLDPKIKTGYILPFNIGNLPKTNVDFYSIEYSTLNKE 181 (220)
T ss_pred HHHHHHHHHHcCCCcCeEEEeCC------------HHHHHHHHHHCCCCeEEEEEecccCcccccCceEEeeehhhcCHH
Confidence 3456777777886 478888864 345566666677665544443 1234677
Q ss_pred HHHHHHhcCCCeeccCcccccc
Q 026651 198 AVETLVHSGLDVFAHNIETVKR 219 (235)
Q Consensus 198 ~l~~L~eAG~d~ynHNLETs~r 219 (235)
-++.++++|..++-.-+++...
T Consensus 182 ~v~~~~~~G~~v~~wtvn~~~~ 203 (220)
T cd08579 182 FIRQAHQNGKKVYVWTVNDPDD 203 (220)
T ss_pred HHHHHHHCCCEEEEEcCCCHHH
Confidence 8888888999888776666444
No 444
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=48.52 E-value=16 Score=31.97 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=32.4
Q ss_pred CcEEEEEeecCCCCCCCc-hHHHHHHHHHHHhh----CCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 148 VDYIVLTSVDRDDIPDGG-SGHFARTVKAMKKQ----KPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 148 l~y~VVTSg~RddL~D~g-a~~~a~~Ir~Ik~~----~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+++++|.|+.=+ ...+. .....+-|+++|+. ..++.|++ ||-.+.+.++.+.+||+|.+
T Consensus 128 vD~VlvMsV~PG-~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v---DGGI~~~~~~~~~~aGad~~ 191 (201)
T PF00834_consen 128 VDMVLVMSVEPG-FGGQKFIPEVLEKIRELRKLIPENGLDFEIEV---DGGINEENIKQLVEAGADIF 191 (201)
T ss_dssp SSEEEEESS-TT-TSSB--HGGHHHHHHHHHHHHHHHTCGSEEEE---ESSESTTTHHHHHHHT--EE
T ss_pred cCEEEEEEecCC-CCcccccHHHHHHHHHHHHHHHhcCCceEEEE---ECCCCHHHHHHHHHcCCCEE
Confidence 567788887521 11111 11233444444433 33344443 67889999999999999976
No 445
>PF08091 Toxin_21: Spider insecticidal peptide; InterPro: IPR012626 This family consists of insecticidal peptides isolated from venom of spiders of Aptostichus schlingeri (Trap-door spider) and Calisoga sp. Nine insecticidal peptides were isolated from the venom of the A. schlinger spider and seven of these toxins cause flaccid paralysis to insect larvae within 10 min of injection. However, all nine peptides were lethal within 24 hours [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=48.44 E-value=19 Score=24.23 Aligned_cols=29 Identities=34% Similarity=0.786 Sum_probs=23.9
Q ss_pred CCCccceeCCCCCCceeeeeeecCCCCCCCC
Q 026651 87 CPNIGECWNGGGDGIATATIMLLGDTCTRGC 117 (235)
Q Consensus 87 CPNi~ec~~~~~~~~~taT~mIlG~~CtedC 117 (235)
|-|-.+|-+++ =|. +=|+.|+|+.|++-|
T Consensus 8 C~ns~dCC~g~-C~~-fWtC~~~~~~CSk~C 36 (39)
T PF08091_consen 8 CSNSKDCCSGN-CGY-FWTCQIRGDGCSKEC 36 (39)
T ss_pred CCCchhhccCC-ccc-eEEEEEcCCCcccee
Confidence 77888998875 344 778899999999988
No 446
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=48.43 E-value=84 Score=28.38 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=52.6
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCC----CCCCchHHHHHHHHHHHhhCCCceEEEee-cCCCCC----HHH---
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD----IPDGGSGHFARTVKAMKKQKPDIMVECLT-SDFRGD----LRA--- 198 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rdd----L~D~ga~~~a~~Ir~Ik~~~p~~~ievl~-sdg~l~----~e~--- 198 (235)
.+..++......+.+.|++.+++-.|+... -.++.+..-.+.|+.|++.++...|.+-+ |.|.-+ ++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 567788888889999999988877776531 12355677777888888877767777544 554222 233
Q ss_pred HHHHHhcCCCe
Q 026651 199 VETLVHSGLDV 209 (235)
Q Consensus 199 l~~L~eAG~d~ 209 (235)
|++=.+||.+.
T Consensus 150 L~~K~~aGA~f 160 (272)
T TIGR00676 150 LKRKVDAGADY 160 (272)
T ss_pred HHHHHHcCCCe
Confidence 34444788863
No 447
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.31 E-value=83 Score=29.57 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
++.|+.+.+.|++.+++- .++ .+.+.++++.++. .+.+-+|-| .+.+.+..+++.|+|++.
T Consensus 215 leea~eA~~aGaDiImLD-----nms---pe~l~~av~~~~~-----~~~lEaSGG-It~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 215 LAQLETALAHGAQSVLLD-----NFT---LDMMREAVRVTAG-----RAVLEVSGG-VNFDTVRAFAETGVDRIS 275 (294)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCC---HHHHHHHHHhhcC-----CeEEEEECC-CCHHHHHHHHhcCCCEEE
Confidence 456677778898877752 233 4566777776653 244556644 599999999999999874
No 448
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=48.29 E-value=64 Score=28.53 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=38.8
Q ss_pred HHHHHHcCCcEEEEEeec---CCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 140 AKAIASWGVDYIVLTSVD---RDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 140 A~aa~~~Gl~y~VVTSg~---RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
|..+.+.|++|+.+-.+. ..+.+..|.+.+.. +++.. .+-+++ .|-++.+.+..+.++|.+.+.
T Consensus 124 a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~----~~~~~---~iPvvA-IGGI~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEW----WAEMI---EIPCIV-QAGSDLASAVEVAETGAEFVA 190 (221)
T ss_pred HHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHH----HHHhC---CCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 444667999998874442 22233445555433 43322 233333 455599999999999998753
No 449
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=48.23 E-value=1e+02 Score=28.34 Aligned_cols=82 Identities=12% Similarity=0.206 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCcEEEEE--eecCCCCCCCchHHHH-----HHHHHHHhhCCCc-eEEEeecCCCCCHHHHHHHHhcCC
Q 026651 136 PENTAKAIASWGVDYIVLT--SVDRDDIPDGGSGHFA-----RTVKAMKKQKPDI-MVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 136 ~~~~A~aa~~~Gl~y~VVT--Sg~RddL~D~ga~~~a-----~~Ir~Ik~~~p~~-~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
..+.+++..+.|++.+.+. ++. -++.+.+++|+ +.++.|++..+.. -+..|. .....++.+++.|+
T Consensus 182 ~~~~~~~~~eaGad~i~i~d~~~~--~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg----~~~~~~~~~~~~~~ 255 (338)
T TIGR01464 182 TIEYLVEQVKAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAK----GAGHLLEELAETGA 255 (338)
T ss_pred HHHHHHHHHHcCCCEEEEECCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC----CcHHHHHHHHhcCC
Confidence 4455777778899864443 333 37777787776 4777777653332 355553 34567899999999
Q ss_pred Cee----ccCcccccccccc
Q 026651 208 DVF----AHNIETVKRLQRI 223 (235)
Q Consensus 208 d~y----nHNLETs~rlfp~ 223 (235)
+.+ +.+|..+++.++.
T Consensus 256 ~~~s~d~~~dl~e~~~~~~~ 275 (338)
T TIGR01464 256 DVVGLDWTVDLKEARKRVGP 275 (338)
T ss_pred CEEEeCCCCCHHHHHHHhCC
Confidence 998 6677777777763
No 450
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=48.23 E-value=1e+02 Score=28.28 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 135 EPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 135 E~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
.+.+.-+...++|++ -|+|||-... +..=.+.++++.+...+ .. ..+-|-++.+-+..|.+.|++-||-.
T Consensus 129 d~~~al~~l~~lG~~-rILTSGg~~~-----a~~g~~~L~~lv~~a~~--~~-Im~GgGV~~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 129 NPLNALKQLADLGVA-RILTSGQQQD-----AEQGLSLIMELIAASDG--PI-IMAGAGVRLSNLHKFLDAGVREVHSS 198 (248)
T ss_pred CHHHHHHHHHHcCCC-EEECCCCCCC-----HHHHHHHHHHHHHhcCC--CE-EEeCCCCCHHHHHHHHHcCCCEEeeC
Confidence 344455577777765 4679996532 44445555555544433 34 45566678999999999999999943
No 451
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=48.23 E-value=18 Score=29.32 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHcCCcEEEEEee---cCCC-CCCCchHHHHHHHHHHHhh----CCCceEEEeecCCCCC----HHHHH
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSV---DRDD-IPDGGSGHFARTVKAMKKQ----KPDIMVECLTSDFRGD----LRAVE 200 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg---~Rdd-L~D~ga~~~a~~Ir~Ik~~----~p~~~ievl~sdg~l~----~e~l~ 200 (235)
.+...+..+.++.+|++++++-+| .... ..+...+.+++.+++|-+. .-.+.+|.+...+... ++..+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 149 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYR 149 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHH
Confidence 356677889999999999888877 2211 1123445555555555432 2224567665555422 56667
Q ss_pred HHHhcCCCeeccCcccc
Q 026651 201 TLVHSGLDVFAHNIETV 217 (235)
Q Consensus 201 ~L~eAG~d~ynHNLETs 217 (235)
.|.+.+.+.+.=+++|.
T Consensus 150 ~l~~~~~~~~~i~~D~~ 166 (213)
T PF01261_consen 150 LLEEVDSPNVGICFDTG 166 (213)
T ss_dssp HHHHHTTTTEEEEEEHH
T ss_pred HHhhcCCCcceEEEehH
Confidence 77777766676666654
No 452
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=48.15 E-value=1.7e+02 Score=27.88 Aligned_cols=99 Identities=24% Similarity=0.367 Sum_probs=0.0
Q ss_pred CCCccceeCCCCCCceeeeeeecCCCCCCCCCCcccCCCCCCCCCCchhHHH--HHHHHH----HcCCc-EEE-------
Q 026651 87 CPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPEN--TAKAIA----SWGVD-YIV------- 152 (235)
Q Consensus 87 CPNi~ec~~~~~~~~~taT~mIlG~~CtedC~FCAQSt~~~p~~ld~eE~~~--~A~aa~----~~Gl~-y~V------- 152 (235)
|||.--=.++| +|-||+.. +......++..++. .++.+. +++-. |.+
T Consensus 34 CPNRDGti~rG------------------GCtFC~~~-g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TN 94 (312)
T COG1242 34 CPNRDGTIGRG------------------GCTFCSVA-GSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTN 94 (312)
T ss_pred CCCCCCcccCC------------------ceeeecCC-CCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEecccc
Q ss_pred -----------------------EEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC--------------
Q 026651 153 -----------------------LTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-------------- 195 (235)
Q Consensus 153 -----------------------VTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~-------------- 195 (235)
+.=|+|+|.-. +.+.+.+....+ ..+|-+-+|+=+
T Consensus 95 TyApvevLre~ye~aL~~~~VVGLsIgTRPDClp---d~VldlL~e~~~-----r~~vWvELGLQT~h~~Tlk~iNRgHd 166 (312)
T COG1242 95 TYAPVEVLREMYEQALSEAGVVGLSIGTRPDCLP---DDVLDLLAEYNK-----RYEVWVELGLQTAHDKTLKRINRGHD 166 (312)
T ss_pred ccCcHHHHHHHHHHHhCcCCeeEEeecCCCCCCc---HHHHHHHHHHhh-----heEEEEEeccchhhHHHHHHHhcccc
Q ss_pred ----HHHHHHHHhcCCCeecc
Q 026651 196 ----LRAVETLVHSGLDVFAH 212 (235)
Q Consensus 196 ----~e~l~~L~eAG~d~ynH 212 (235)
.+++++|.+-|+.+..|
T Consensus 167 ~~~y~dav~r~rkrgIkvc~H 187 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTH 187 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEE
No 453
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.06 E-value=45 Score=31.28 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=54.5
Q ss_pred CCchhHHHHHHHHHHcC-CcEEEEEeecC----------------------CCCCCCchHHHHHHHHHHHhhCCCceEEE
Q 026651 131 PDPMEPENTAKAIASWG-VDYIVLTSVDR----------------------DDIPDGGSGHFARTVKAMKKQKPDIMVEC 187 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~G-l~y~VVTSg~R----------------------ddL~D~ga~~~a~~Ir~Ik~~~p~~~iev 187 (235)
+|..-..++..-+..+| +.+.++...|. ||+-|. -.-++++.+.+|+... ..|-+
T Consensus 173 PD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidT-G~Tl~~aa~~Lk~~GA-~~V~~ 250 (319)
T PRK04923 173 PDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDT-AGTLCAAAAALKQRGA-LKVVA 250 (319)
T ss_pred ECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCc-hHHHHHHHHHHHHCCC-CEEEE
Confidence 45555566666666776 66666665542 122222 2458889999987643 47999
Q ss_pred eecCCCCCHHHHHHHHhcCCCee
Q 026651 188 LTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 188 l~sdg~l~~e~l~~L~eAG~d~y 210 (235)
++..|.++.+++++|.++|++.+
T Consensus 251 ~~THgvfs~~a~~~l~~s~i~~i 273 (319)
T PRK04923 251 YITHPVLSGPAVDNINNSQLDEL 273 (319)
T ss_pred EEECcccCchHHHHHhhCCCCEE
Confidence 99999999999999999999764
No 454
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=47.96 E-value=66 Score=26.86 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=44.6
Q ss_pred CCchhHHHHHHHHHHcCCcE--EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceE--EEeecCCCCCHHHHHHHHhcC
Q 026651 131 PDPMEPENTAKAIASWGVDY--IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV--ECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y--~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~i--evl~sdg~l~~e~l~~L~eAG 206 (235)
.|++...+.++++.+.|+++ ..|..|.- .+ .+..--+.+++|++. +...+ .+.+- ...+.++.++++|
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~--~~--~~~~~~~~v~~i~~~-~~~~v~v~lm~~---~~~~~~~~~~~~g 79 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHF--VP--NLTFGPPVLEALRKY-TDLPIDVHLMVE---NPDRYIEDFAEAG 79 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCC--CC--CcccCHHHHHHHHhc-CCCcEEEEeeeC---CHHHHHHHHHHcC
Confidence 56778899999999999984 43333322 12 122345677777764 22233 33332 2356788999999
Q ss_pred CCe
Q 026651 207 LDV 209 (235)
Q Consensus 207 ~d~ 209 (235)
++.
T Consensus 80 adg 82 (210)
T TIGR01163 80 ADI 82 (210)
T ss_pred CCE
Confidence 998
No 455
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=47.81 E-value=56 Score=29.17 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCC------CchHHHHHHHHHHHhhC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQK 180 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D------~ga~~~a~~Ir~Ik~~~ 180 (235)
.+..++......+.+.|++.+++..|+.....+ ....+-.+.|+.|++.+
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~ 125 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKEN 125 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 456888888999999999998888888754322 45566777777887654
No 456
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=47.78 E-value=84 Score=27.66 Aligned_cols=74 Identities=7% Similarity=0.122 Sum_probs=42.7
Q ss_pred chhHHHHHHHHHHcCCcEEEEEeecCCC-CCCCchHHHHHHHHHHHhhCC--C--ceEEEeecCC---CCCHHHHHHHH-
Q 026651 133 PMEPENTAKAIASWGVDYIVLTSVDRDD-IPDGGSGHFARTVKAMKKQKP--D--IMVECLTSDF---RGDLRAVETLV- 203 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~y~VVTSg~Rdd-L~D~ga~~~a~~Ir~Ik~~~p--~--~~ievl~sdg---~l~~e~l~~L~- 203 (235)
.+...+..+.|+++|++++++.++.... ..+...+.+.+.+++|-+..- + +.||..-..+ ..+.+.+..|.
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~ 163 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIID 163 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 3567788999999999998888886532 122344556666666654321 1 2344443332 34545554444
Q ss_pred hcC
Q 026651 204 HSG 206 (235)
Q Consensus 204 eAG 206 (235)
+-+
T Consensus 164 ~v~ 166 (279)
T cd00019 164 LIK 166 (279)
T ss_pred hcC
Confidence 444
No 457
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=47.76 E-value=49 Score=28.76 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=54.6
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeec-CCC---C-CCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVD-RDD---I-PDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~-Rdd---L-~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e 204 (235)
..+.++..+.|+.-.+.|+++.=|=.+. |+. . .+.+.+++..+|+.+++..+++-|-+-++ +.+.++.-.+
T Consensus 15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~----~~~v~~~aL~ 90 (210)
T PF00809_consen 15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF----NPEVAEAALK 90 (210)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES----SHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC----CHHHHHHHHH
Confidence 4566888888999999999975553221 211 1 34588899999999997444555555544 7788888888
Q ss_pred cCCCeecc
Q 026651 205 SGLDVFAH 212 (235)
Q Consensus 205 AG~d~ynH 212 (235)
+|.+.+|.
T Consensus 91 ~g~~~ind 98 (210)
T PF00809_consen 91 AGADIIND 98 (210)
T ss_dssp HTSSEEEE
T ss_pred cCcceEEe
Confidence 89988764
No 458
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=47.69 E-value=42 Score=30.98 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 133 PMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 133 ~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
...|.+.|+..++.|+. .+|+|=..- . +|.++ .++.+++.. .+=+|.=||+.++.|+..-..+|.|.
T Consensus 65 d~dp~~ia~~Ye~~GAa~iSVLTd~~~--F-~Gs~e----~L~~v~~~v---~~PvL~KDFiiD~yQI~~Ar~~GADa 132 (254)
T COG0134 65 DFDPVEIAKAYEEGGAAAISVLTDPKY--F-QGSFE----DLRAVRAAV---DLPVLRKDFIIDPYQIYEARAAGADA 132 (254)
T ss_pred cCCHHHHHHHHHHhCCeEEEEecCccc--c-CCCHH----HHHHHHHhc---CCCeeeccCCCCHHHHHHHHHcCccc
Confidence 34555689999999987 899996643 2 23333 335565542 45689999999999999999999875
No 459
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.60 E-value=2.4e+02 Score=26.39 Aligned_cols=84 Identities=20% Similarity=0.152 Sum_probs=50.6
Q ss_pred CCCCCchhHHHH-------HHHHHHcCCcEEEEE------------e--ecCCCCC----CCchHHHHHHHHHHHhhCC-
Q 026651 128 PAPPDPMEPENT-------AKAIASWGVDYIVLT------------S--VDRDDIP----DGGSGHFARTVKAMKKQKP- 181 (235)
Q Consensus 128 p~~ld~eE~~~~-------A~aa~~~Gl~y~VVT------------S--g~RddL~----D~ga~~~a~~Ir~Ik~~~p- 181 (235)
|..++.+|+.++ |+.+++.|.+-+=|- . -+|.|-- +.-+.-+.++|++||+..+
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~ 210 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDK 210 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 456888887755 888888888744332 1 1232210 1225667899999998763
Q ss_pred ----CceEEEeec--C----CCCCH---HHHHHHHhcCCCeec
Q 026651 182 ----DIMVECLTS--D----FRGDL---RAVETLVHSGLDVFA 211 (235)
Q Consensus 182 ----~~~ievl~s--d----g~l~~---e~l~~L~eAG~d~yn 211 (235)
+..|.+=.+ + |.-.+ +-++.|.++|+|.+|
T Consensus 211 ~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~ 253 (353)
T cd04735 211 HADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLH 253 (353)
T ss_pred ccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444444333 2 22223 335788899998876
No 460
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=47.49 E-value=77 Score=29.58 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCcEEEEE--eec---CCCCCCC---chHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 138 NTAKAIASWGVDYIVLT--SVD---RDDIPDG---GSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVT--Sg~---RddL~D~---ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
+.|+.+.++|+++++|. +|. ....... .+..+.++.+..++ ..+-+++.-|..+...+.+..++|.+-
T Consensus 147 ~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~----~~vpVIA~GGI~~~~di~kAla~GA~~ 222 (325)
T cd00381 147 EAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARD----YGVPVIADGGIRTSGDIVKALAAGADA 222 (325)
T ss_pred HHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhh----cCCcEEecCCCCCHHHHHHHHHcCCCE
Confidence 56778888999998873 111 1001111 23344444443332 346788888898989888888899865
No 461
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=47.02 E-value=50 Score=30.73 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=54.6
Q ss_pred CCchhHHHHHHHHHHcCCcEE----------EEEeecCCCCCCCchHHHHHHHHHHHhhCC-CceEEEeecCCCCC----
Q 026651 131 PDPMEPENTAKAIASWGVDYI----------VLTSVDRDDIPDGGSGHFARTVKAMKKQKP-DIMVECLTSDFRGD---- 195 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~----------VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p-~~~ievl~sdg~l~---- 195 (235)
-|+++..+.|+.+.+.|.+.+ |+-.|.+-.| ....+.+.+++++|++..| +.-|-+=+..|.-+
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~L-l~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~ 150 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATL-LKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERK 150 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHh-hcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHH
Confidence 578888999999999886421 1122211112 1246789999999998764 34455555445422
Q ss_pred HHHHHHHHhcCCCeeccCcccccc
Q 026651 196 LRAVETLVHSGLDVFAHNIETVKR 219 (235)
Q Consensus 196 ~e~l~~L~eAG~d~ynHNLETs~r 219 (235)
.+-++.|.++|++.++=---|...
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~ 174 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKED 174 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCcc
Confidence 355678889999988644344433
No 462
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=46.92 E-value=1.1e+02 Score=29.82 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=58.8
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCC--CchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHh-cC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPD--GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVH-SG 206 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D--~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~e-AG 206 (235)
..|.++-++.|+..++.|+++..|=+.+|+ +.. -+... -+.|++||+..|+ |-+++-.+..+.+.+...++ .|
T Consensus 151 ~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~-~kg~~~~pad-~~~i~~v~~~~~~--ipviaNGnI~~~~d~~~~~~~tG 226 (358)
T KOG2335|consen 151 FVDLEKTVDYAKMLEDAGVSLLTVHGRTRE-QKGLKTGPAD-WEAIKAVRENVPD--IPVIANGNILSLEDVERCLKYTG 226 (358)
T ss_pred cCcHHHHHHHHHHHHhCCCcEEEEecccHH-hcCCCCCCcC-HHHHHHHHHhCcC--CcEEeeCCcCcHHHHHHHHHHhC
Confidence 578899999999999999999999888875 222 12222 3678888887775 78889888888888877776 77
Q ss_pred CCee
Q 026651 207 LDVF 210 (235)
Q Consensus 207 ~d~y 210 (235)
++-+
T Consensus 227 ~dGV 230 (358)
T KOG2335|consen 227 ADGV 230 (358)
T ss_pred CceE
Confidence 7643
No 463
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.89 E-value=44 Score=31.06 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCC-CceEEEeecCCCCCHHHHHHHHhcCCCee---ccCcccccccc
Q 026651 169 FARTVKAMKKQKP-DIMVECLTSDFRGDLRAVETLVHSGLDVF---AHNIETVKRLQ 221 (235)
Q Consensus 169 ~a~~Ir~Ik~~~p-~~~ievl~sdg~l~~e~l~~L~eAG~d~y---nHNLETs~rlf 221 (235)
+.+.|+++|+..| ...||+-+. +.+++...+++|+|++ |-+.|.++..-
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~----tleea~ea~~~gaDiI~LDn~s~e~l~~av 232 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVD----TLDQLEEALELGVDAVLLDNMTPDTLREAV 232 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC----CHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 6788999998876 455676665 7899999999999987 33444444433
No 464
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=46.84 E-value=1.2e+02 Score=27.57 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=54.2
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhc--CC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHS--GL 207 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eA--G~ 207 (235)
--|.+.+++.|+.-.+.|+++.=|=.+.+ ++.|.+++...|+.|++.. ++-|-+-+ -+.+.++.-.++ |.
T Consensus 21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~~~---~~eE~~r~~~~v~~l~~~~-~~plsIDT----~~~~v~eaaL~~~~G~ 92 (261)
T PRK07535 21 AKDAAFIQKLALKQAEAGADYLDVNAGTA---VEEEPETMEWLVETVQEVV-DVPLCIDS----PNPAAIEAGLKVAKGP 92 (261)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCC---chhHHHHHHHHHHHHHHhC-CCCEEEeC----CCHHHHHHHHHhCCCC
Confidence 36788999999999999999765543322 3567889999999998753 22233333 256777776666 88
Q ss_pred Ceecc-Ccc
Q 026651 208 DVFAH-NIE 215 (235)
Q Consensus 208 d~ynH-NLE 215 (235)
+.+|- |.|
T Consensus 93 ~iINsIs~~ 101 (261)
T PRK07535 93 PLINSVSAE 101 (261)
T ss_pred CEEEeCCCC
Confidence 88776 443
No 465
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.82 E-value=96 Score=29.10 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
++.|+.+.+.|++.++ |..-..+.+.++++.+++ .+-+.+|-|. +.+.+...++.|+|++
T Consensus 207 leea~~a~~agaDiIm--------LDnmspe~l~~av~~~~~-----~~~leaSGGI-~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 207 LAAAEEAAAAGADIIM--------LDNMSLEQIEQAITLIAG-----RSRIECSGNI-DMTTISRFRGLAIDYV 266 (290)
T ss_pred HHHHHHHHHcCCCEEE--------ECCCCHHHHHHHHHHhcC-----ceEEEEECCC-CHHHHHHHHhcCCCEE
No 466
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=46.81 E-value=69 Score=29.41 Aligned_cols=77 Identities=8% Similarity=-0.100 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 134 MEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+-|.+.|+.-++.|++ |+|=- |. + . .+.|++|.+.. .+.+.+.-|.- .|+++.+.++|++++-
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVDL-g~----~--n----~~~i~~i~~~~---~~~v~vGGGIr-~e~v~~~l~aGa~rVv 102 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIML-GP----N--N----DDAAKEALHAY---PGGLQVGGGIN-DTNAQEWLDEGASHVI 102 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEC-CC----C--c----HHHHHHHHHhC---CCCEEEeCCcC-HHHHHHHHHcCCCEEE
Confidence 3449999999999998 54423 21 1 1 35666665542 46777777775 4999999999999987
Q ss_pred cCccc------ccccccccc
Q 026651 212 HNIET------VKRLQRIVR 225 (235)
Q Consensus 212 HNLET------s~rlfp~Vc 225 (235)
=|=-. .+.++..+.
T Consensus 103 IGS~av~~~~i~~~~~~~i~ 122 (253)
T TIGR02129 103 VTSWLFTKGKFDLKRLKEIV 122 (253)
T ss_pred ECcHHHhCCCCCHHHHHHHH
Confidence 55422 244665555
No 467
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=46.73 E-value=53 Score=31.40 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=52.4
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCC--------chHHHHHHHHHHHhhCCCceE---------------E
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG--------GSGHFARTVKAMKKQKPDIMV---------------E 186 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~--------ga~~~a~~Ir~Ik~~~p~~~i---------------e 186 (235)
-+..+...+.++.+.++|++.+++--+-....+|. .=.-+.++||.||+..|++.| +
T Consensus 47 r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcG 126 (320)
T cd04824 47 RYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCG 126 (320)
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcce
Confidence 36778999999999999999655544421111111 123578999999999997542 1
Q ss_pred EeecCC-CCCHHHHHHH-------HhcCCCeec
Q 026651 187 CLTSDF-RGDLRAVETL-------VHSGLDVFA 211 (235)
Q Consensus 187 vl~sdg-~l~~e~l~~L-------~eAG~d~yn 211 (235)
++-.+| ..+.+.++.| ++||.|+++
T Consensus 127 il~~~g~vdND~Tl~~L~k~Avs~A~AGADiVA 159 (320)
T cd04824 127 ILYEDGTINNEASVKRLAEVALAYAKAGAHIVA 159 (320)
T ss_pred eECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEe
Confidence 222233 2355555554 578888764
No 468
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=46.31 E-value=56 Score=31.34 Aligned_cols=83 Identities=7% Similarity=-0.011 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeecCCCCCC------CchHHHHHHHHHHHhhC----CC--ceEEEeec-----CCCCCH
Q 026651 134 MEPENTAKAIASWGVDYIVLTSVDRDDIPD------GGSGHFARTVKAMKKQK----PD--IMVECLTS-----DFRGDL 196 (235)
Q Consensus 134 eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D------~ga~~~a~~Ir~Ik~~~----p~--~~ievl~s-----dg~l~~ 196 (235)
+...+..+.++++|.+.+++.+|+.....+ ...+.+.+.++.+-+.. .+ +.||.+-. .++-+.
T Consensus 115 ~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~~~~~ll~T~ 194 (382)
T TIGR02631 115 RKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEPRGDILLPTV 194 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCCCcceecCCH
Confidence 445566788999999999999986532111 23455666666664221 12 34666522 234455
Q ss_pred HHHHHHHh-c------C--CCeeccCccc
Q 026651 197 RAVETLVH-S------G--LDVFAHNIET 216 (235)
Q Consensus 197 e~l~~L~e-A------G--~d~ynHNLET 216 (235)
+++..+.+ - | +|++|.|++-
T Consensus 195 ~~al~li~~v~~pn~vgl~lDvgH~~~~g 223 (382)
T TIGR02631 195 GHALAFIETLERPELFGLNPETGHEQMAG 223 (382)
T ss_pred HHHHHHHHHcCCccceeEEEechhHhhcC
Confidence 55444433 1 3 3888988764
No 469
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=46.14 E-value=96 Score=28.42 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=51.3
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCC------CCCCchHHHHHHHHHHHhhCCC-ceEEEe-ecCCC---CCHH-H
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDD------IPDGGSGHFARTVKAMKKQKPD-IMVECL-TSDFR---GDLR-A 198 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rdd------L~D~ga~~~a~~Ir~Ik~~~p~-~~ievl-~sdg~---l~~e-~ 198 (235)
.+.+++......+.++|++.+++-.|+... ...+.+++-.+.|+.||+..+. ..|.+- -|.|. .+.+ +
T Consensus 71 ~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d 150 (281)
T TIGR00677 71 MPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELD 150 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHH
Confidence 455788888889999999988887777631 1345678888889999876432 455544 34442 2222 2
Q ss_pred HHHHH---hcCCCe
Q 026651 199 VETLV---HSGLDV 209 (235)
Q Consensus 199 l~~L~---eAG~d~ 209 (235)
++.|+ +||.+.
T Consensus 151 ~~~L~~Ki~aGA~f 164 (281)
T TIGR00677 151 LKYLKEKVDAGADF 164 (281)
T ss_pred HHHHHHHHHcCCCE
Confidence 44443 588874
No 470
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=46.09 E-value=1.1e+02 Score=24.75 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=37.6
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEeecCCC------CCHHHHHHHH
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD--IMVECLTSDFR------GDLRAVETLV 203 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~--~~ievl~sdg~------l~~e~l~~L~ 203 (235)
|.+.+.+.++.+.+.|++-++++. +.++.+++..++ +.|-+-+..+. ...+.++..+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 788888889999998987655553 334444433332 22222222221 1346677788
Q ss_pred hcCCCee
Q 026651 204 HSGLDVF 210 (235)
Q Consensus 204 eAG~d~y 210 (235)
++|+|-+
T Consensus 76 ~~Gad~i 82 (201)
T cd00945 76 DLGADEI 82 (201)
T ss_pred HcCCCEE
Confidence 8887764
No 471
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=45.84 E-value=1.5e+02 Score=25.51 Aligned_cols=66 Identities=24% Similarity=0.385 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 138 NTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 138 ~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+.++.+.+.|++++++-..... .+++ +.+.+.++++++.. + +.+++ +..+.+.+..+.++|++.+.
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~-~p~~--~~~~~~i~~~~~~g-~--~~iiv--~v~t~~ea~~a~~~G~d~i~ 148 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRP-RPDG--ETLAELIKRIHEEY-N--CLLMA--DISTLEEALNAAKLGFDIIG 148 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-CCCC--cCHHHHHHHHHHHh-C--CeEEE--ECCCHHHHHHHHHcCCCEEE
Confidence 4668888999997555332211 1221 25556777777654 2 33333 23478889999999999983
No 472
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=45.76 E-value=1.4e+02 Score=26.91 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=50.6
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.+.++..+.|+++++.|+....|-... +.++..+ -+.|++|++..+ .+-+...-+.-+.+.+.+..++|.+-+
T Consensus 145 ~~~~~~~~~a~~l~~aGad~i~Vd~~~----~g~~~a~-~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~V 217 (231)
T TIGR00736 145 CIPLDELIDALNLVDDGFDGIHVDAMY----PGKPYAD-MDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFV 217 (231)
T ss_pred CCcchHHHHHHHHHHcCCCEEEEeeCC----CCCchhh-HHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeE
Confidence 345577899999999999977663221 2111122 466777877542 256888899999888888888998743
No 473
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=45.64 E-value=91 Score=29.91 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCC-CCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRD-DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd-dL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
+.++...+.++.+.++|++|+.+..+... ..... ..+.++++++.. .+.+++--|. +.+.+..++++|++.
T Consensus 115 ~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~----~~~~l~~l~~~~---~iPI~a~GGI-~~~n~~~~l~aGAdg 186 (430)
T PRK07028 115 INVPDPVKRAVELEELGVDYINVHVGIDQQMLGKD----PLELLKEVSEEV---SIPIAVAGGL-DAETAAKAVAAGADI 186 (430)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCC----hHHHHHHHHhhC---CCcEEEECCC-CHHHHHHHHHcCCCE
Confidence 45555556678888899999876554311 01111 124667776543 3455554455 889999999999985
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 187 v 187 (430)
T PRK07028 187 V 187 (430)
T ss_pred E
Confidence 4
No 474
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=45.45 E-value=55 Score=27.98 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhCCCce-EEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 169 FARTVKAMKKQKPDIM-VECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 169 ~a~~Ir~Ik~~~p~~~-ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+.++++++|+..|... |+|=+. +.|+++..+++|+|++
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~----~~ee~~ea~~~g~d~I 104 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE----NLEEAEEALEAGADII 104 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES----SHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcC----CHHHHHHHHHhCCCEE
Confidence 6678888888766653 666554 6899999999999876
No 475
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=45.04 E-value=54 Score=31.65 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=52.3
Q ss_pred CCCCCCCCcccCCCCCCCCCCchhHHHHHHHHH-HcCCc-----EEEEEeecCCCCCCCchHHHHHHHHHHHhhC-CCce
Q 026651 112 TCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIA-SWGVD-----YIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIM 184 (235)
Q Consensus 112 ~CtedC~FCAQSt~~~p~~ld~eE~~~~A~aa~-~~Gl~-----y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~-p~~~ 184 (235)
.|+-+|.||+--.+....-|...|++.+...++ .+|-. .=||-.|-+.-|.. .+.+...++-|.... .+++
T Consensus 110 GC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N--~dnV~~a~~i~~~~~G~~ls 187 (349)
T COG0820 110 GCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLN--LDNVVKALEIINDDEGLGLS 187 (349)
T ss_pred CcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhh--HHHHHHHHHhhcCccccccc
Confidence 699999999966433233588899988766544 44441 35666776643333 666666666665332 1221
Q ss_pred ---EEEeecCCCCCHHHHHHHHh
Q 026651 185 ---VECLTSDFRGDLRAVETLVH 204 (235)
Q Consensus 185 ---ievl~sdg~l~~e~l~~L~e 204 (235)
|-+.+|.. ...+.+|.+
T Consensus 188 ~R~iTvSTsGi---~~~I~~l~~ 207 (349)
T COG0820 188 KRRITVSTSGI---VPRIRKLAD 207 (349)
T ss_pred ceEEEEecCCC---chhHHHHHh
Confidence 34444432 356666664
No 476
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=45.01 E-value=1.9e+02 Score=24.41 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=43.3
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCC--CchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHH-hcC
Q 026651 139 TAKAIASWGVDYIVLTSVDRDDIPD--GGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLV-HSG 206 (235)
Q Consensus 139 ~A~aa~~~Gl~y~VVTSg~RddL~D--~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~-eAG 206 (235)
.+..|++.|+..+++ ....+|... ..-..|.+.++++++......+.+..|+..+++.++.++. +.|
T Consensus 103 a~~~A~~~g~~~v~~-G~~~~d~~~~~d~~~~f~~~~~~~~~~~~~~~~~i~~Pl~~~~K~eI~~la~~~g 172 (201)
T TIGR00364 103 AASYAEALGAEAVIT-GVCETDFSGYPDCRDEFVKAFNHALNLGMLTPVKIRAPLMDLTKAEIVQLADELG 172 (201)
T ss_pred HHHHHHHCCCCEEEE-EeccCcCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEECCcCCCHHHHHHHHHHcC
Confidence 356688888876544 333333321 1245677888888765434458899999999988886665 555
No 477
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.96 E-value=1.6e+02 Score=26.52 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=50.0
Q ss_pred CCCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCC---------------chHHHHHHHHHHHhhCCCceEEEee---cC
Q 026651 130 PPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDG---------------GSGHFARTVKAMKKQKPDIMVECLT---SD 191 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~---------------ga~~~a~~Ir~Ik~~~p~~~ievl~---sd 191 (235)
.+|.+.-.+.+++..+.|++..=+==--.|-+.|| .++.+-+.+++||+..+++-+-++. |.
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi 99 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLI 99 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH
Confidence 46778888888888888988544433333333343 2357778889998653333332332 22
Q ss_pred CC-CCHHHHHHHHhcCCCee
Q 026651 192 FR-GDLRAVETLVHSGLDVF 210 (235)
Q Consensus 192 g~-l~~e~l~~L~eAG~d~y 210 (235)
+. |-++-++.++++|++.+
T Consensus 100 ~~~G~e~f~~~~~~aGvdgv 119 (256)
T TIGR00262 100 FRKGVEEFYAKCKEVGVDGV 119 (256)
T ss_pred hhhhHHHHHHHHHHcCCCEE
Confidence 22 33566899999999863
No 478
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=44.70 E-value=1.1e+02 Score=24.25 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=39.1
Q ss_pred HHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 143 IASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 143 a~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
..+.|+.++.+..+................+..+++ .+ .+-+++.-|.-+.+.+.++.++|+|.+
T Consensus 132 ~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~pi~~~GGi~~~~~~~~~~~~Gad~v 196 (200)
T cd04722 132 AEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-GS--KVPVIAGGGINDPEDAAEALALGADGV 196 (200)
T ss_pred HHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-cC--CCCEEEECCCCCHHHHHHHHHhCCCEE
Confidence 577899988876655422111111111223334443 22 456788888888799989988999875
No 479
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=44.64 E-value=1.2e+02 Score=30.45 Aligned_cols=78 Identities=21% Similarity=0.133 Sum_probs=54.8
Q ss_pred CCCchhHHHHHHHHHHcCCc-EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEeecCCCCCHHHHHHHHhcCC
Q 026651 130 PPDPMEPENTAKAIASWGVD-YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~-y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~-~~ievl~sdg~l~~e~l~~L~eAG~ 207 (235)
-.++|-=.+.|+.+.++|.. |.|--.+-. ......+.+.++|..+++..|. .-+.+ .|.|+++.+-.+...|+
T Consensus 167 g~~~dLR~~sa~~l~~~~f~gyaIGgl~~~--~e~y~~~~~~~ii~~~~~~Lp~dkPryL---~GvG~P~~i~~~V~lGv 241 (487)
T PRK13533 167 GTYPDLREESAREASKLGFDVYPIGAVVPL--MERYRYDDLVDVVLAAKRGLGPGAPVHL---FGAGHPMMFALAVALGC 241 (487)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCcccc--cccCCHHHHHHHHHHHHhhCCCCCceEE---eCCCCHHHHHHHHHhCC
Confidence 35667677778888888877 554321111 2223578999999999987653 32333 48889999999999999
Q ss_pred Ceecc
Q 026651 208 DVFAH 212 (235)
Q Consensus 208 d~ynH 212 (235)
|.|-.
T Consensus 242 DlFD~ 246 (487)
T PRK13533 242 DLFDS 246 (487)
T ss_pred Cceec
Confidence 98753
No 480
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=44.61 E-value=1.2e+02 Score=26.75 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=49.9
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHH---HhcCC
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL---VHSGL 207 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L---~eAG~ 207 (235)
++++++ .+++.+.+.+++.+++... .....+-+.++.+++..+ .+.+++.-.-.+++-.+.. ..-|.
T Consensus 126 vp~e~~---v~~~~~~~~~~V~lS~~~~-----~~~~~~~~~i~~L~~~~~--~~~i~vGG~~~~~~~~~~~~~~~~~ga 195 (213)
T cd02069 126 VPIEKI---LEAAKEHKADIIGLSGLLV-----PSLDEMVEVAEEMNRRGI--KIPLLIGGAATSRKHTAVKIAPEYDGP 195 (213)
T ss_pred CCHHHH---HHHHHHcCCCEEEEccchh-----ccHHHHHHHHHHHHhcCC--CCeEEEEChhcCHHHHhhhhccccCCC
Confidence 444554 4477788888877766543 236788889999988755 4556665555666666554 55799
Q ss_pred CeeccCc
Q 026651 208 DVFAHNI 214 (235)
Q Consensus 208 d~ynHNL 214 (235)
|.|..|-
T Consensus 196 d~y~~da 202 (213)
T cd02069 196 VVYVKDA 202 (213)
T ss_pred ceEecCH
Confidence 9998774
No 481
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.52 E-value=64 Score=29.96 Aligned_cols=43 Identities=23% Similarity=0.128 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.-+.++++.+++..+ .+|.+++..|.++.+++++|.++|++.+
T Consensus 215 ~Tl~~aa~~Lk~~Ga-~~I~~~~tH~v~~~~a~~~l~~~~~~~i 257 (304)
T PRK03092 215 GTIAGAVRALKEAGA-KDVIIAATHGVLSGPAAERLKNCGAREV 257 (304)
T ss_pred HHHHHHHHHHHhcCC-CeEEEEEEcccCChHHHHHHHHCCCCEE
Confidence 457788888888765 4799999999999999999999998754
No 482
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=44.39 E-value=92 Score=29.50 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=48.4
Q ss_pred HHHHHHHcCCcEEEE--EeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeecc
Q 026651 139 TAKAIASWGVDYIVL--TSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAH 212 (235)
Q Consensus 139 ~A~aa~~~Gl~y~VV--TSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynH 212 (235)
..++..+.|++++-+ .+-.. ++++...+.+.++++.+.+..|+..+-+-+..|-+ .+.+..|.+.++|.|+.
T Consensus 187 el~~L~~aG~~~IQiDEP~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg~~-~~~~~~l~~l~Vd~l~l 260 (360)
T cd03312 187 LLKKLAAAGAEWVQIDEPALVL-DLPEEWLAAFKRAYEELAKAAPGLKLLLATYFGSL-GENLDLLASLPVDGLHL 260 (360)
T ss_pred HHHHHHHCCCCEEEeeCChhhc-CCCHHHHHHHHHHHHHHhcCCCCCcEEEEecccch-HHHHHHHHcCCCCEEEE
Confidence 366777889987766 33332 24445778888999999776554444444444443 56688899999998864
No 483
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=44.35 E-value=82 Score=28.34 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=60.5
Q ss_pred CCCCCCCCcccCCC-CCC----CCCCchhHHHH-HHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhh------
Q 026651 112 TCTRGCRFCAVKTS-RNP----APPDPMEPENT-AKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQ------ 179 (235)
Q Consensus 112 ~CtedC~FCAQSt~-~~p----~~ld~eE~~~~-A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~------ 179 (235)
.|--+|.||-.=.. ..+ .++.|+|..+- -+.++++|-+-+=| ||--+ --+-+|+.++|+-+-..
T Consensus 50 GCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRi-SG~EP---~l~~EHvlevIeLl~~~tFvlET 125 (228)
T COG5014 50 GCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRI-SGAEP---ILGREHVLEVIELLVNNTFVLET 125 (228)
T ss_pred ccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEe-eCCCc---cccHHHHHHHHHhccCceEEEEe
Confidence 58999999987511 111 25666665533 34446777664444 55433 23348999988873211
Q ss_pred -----------------CCCceEEEeecCCCCCHHHHHHHHhcCCCeeccCccccccc
Q 026651 180 -----------------KPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHNIETVKRL 220 (235)
Q Consensus 180 -----------------~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHNLETs~rl 220 (235)
.+++.|.| |.---|+|.+.++-.|.++-|---|+.-+-+
T Consensus 126 NG~~~g~drslv~el~nr~nv~vRV--svKG~dpesF~kIT~asp~~F~~QL~aLr~L 181 (228)
T COG5014 126 NGLMFGFDRSLVDELVNRLNVLVRV--SVKGWDPESFEKITGASPEYFRYQLKALRHL 181 (228)
T ss_pred CCeEEecCHHHHHHHhcCCceEEEE--EecCCCHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 13333333 3344478888888888888776555554433
No 484
>PLN02417 dihydrodipicolinate synthase
Probab=44.07 E-value=19 Score=32.53 Aligned_cols=92 Identities=9% Similarity=-0.075 Sum_probs=60.1
Q ss_pred CCCchhHHHHHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCC-HH---HHHHHH
Q 026651 130 PPDPMEPENTAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGD-LR---AVETLV 203 (235)
Q Consensus 130 ~ld~eE~~~~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~-~e---~l~~L~ 203 (235)
-+|.+...+..+...+.|++ ++.-|+|-...|+++|-.++.+.+.+.-. + .+-+++.-|-.+ .+ .++...
T Consensus 18 ~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~---~-~~pvi~gv~~~~t~~~i~~a~~a~ 93 (280)
T PLN02417 18 RFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---G-KIKVIGNTGSNSTREAIHATEQGF 93 (280)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC---C-CCcEEEECCCccHHHHHHHHHHHH
Confidence 58999999999999999998 44458888878888777777665333211 1 244555555433 33 334457
Q ss_pred hcCCC--------eeccCcccccccccccc
Q 026651 204 HSGLD--------VFAHNIETVKRLQRIVR 225 (235)
Q Consensus 204 eAG~d--------~ynHNLETs~rlfp~Vc 225 (235)
++|+| .+..+-|-..+||..|.
T Consensus 94 ~~Gadav~~~~P~y~~~~~~~i~~~f~~va 123 (280)
T PLN02417 94 AVGMHAALHINPYYGKTSQEGLIKHFETVL 123 (280)
T ss_pred HcCCCEEEEcCCccCCCCHHHHHHHHHHHH
Confidence 88887 33334566677777766
No 485
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=44.04 E-value=1.6e+02 Score=23.64 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHcCC-cEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCeeccC
Q 026651 135 EPENTAKAIASWGV-DYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVFAHN 213 (235)
Q Consensus 135 E~~~~A~aa~~~Gl-~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~ynHN 213 (235)
-...+.+.+++.|+ +.+++.|..- +.++.+|+..|+..+.+++................|++.++-+
T Consensus 77 ~~~~l~~~i~~~~~~~~v~i~s~~~------------~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 144 (189)
T cd08556 77 LEAKVAELLREYGLEERVVVSSFDH------------EALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPH 144 (189)
T ss_pred HHHHHHHHHHHcCCcCCEEEEeCCH------------HHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccC
Confidence 34456777888885 5788888742 4667777777777777776654432222124455555544443
No 486
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.89 E-value=51 Score=30.43 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCCC-ceEEEeecCCCCCHHHHHHHHhcCCCeec
Q 026651 167 GHFARTVKAMKKQKPD-IMVECLTSDFRGDLRAVETLVHSGLDVFA 211 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~-~~ievl~sdg~l~~e~l~~L~eAG~d~yn 211 (235)
+.+.+.|+++|+..|. ..|++=+. +.|+++...++|+|++-
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VEv~----tleea~~A~~~GaDiI~ 207 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIECE----SLEEAKNAMNAGADIVM 207 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEeC----CHHHHHHHHHcCCCEEE
Confidence 4567889999998883 55665554 78999999999999863
No 487
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=43.87 E-value=1.2e+02 Score=25.66 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhCCCc--eEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 168 HFARTVKAMKKQKPDI--MVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 168 ~~a~~Ir~Ik~~~p~~--~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
...+.++++++..+.. .+.+++ +|-++.+.+..|.++|+|.+
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~i~v-~GGI~~~nv~~l~~~GaD~v 195 (220)
T PRK05581 152 EVLEKIRELRKLIDERGLDILIEV-DGGINADNIKECAEAGADVF 195 (220)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEE-ECCCCHHHHHHHHHcCCCEE
Confidence 3445556665543211 123434 45568899999999999976
No 488
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=43.76 E-value=1.1e+02 Score=25.39 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=42.9
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhC-CCceEEEeecCCCCCHHHHHHHHhcCCCe
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQK-PDIMVECLTSDFRGDLRAVETLVHSGLDV 209 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~-p~~~ievl~sdg~l~~e~l~~L~eAG~d~ 209 (235)
+|..+..+.++++.+.|++++=+=-.+....+. ...-.+.+++|++.. ....+.+.+.+- .+.++.+.++|+|.
T Consensus 9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~~~d~---~~~~~~~~~~g~dg 83 (211)
T cd00429 9 ADFANLGEELKRLEEAGADWIHIDVMDGHFVPN--LTFGPPVVKALRKHTDLPLDVHLMVENP---ERYIEAFAKAGADI 83 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCc--cccCHHHHHHHHhhCCCcEEEEeeeCCH---HHHHHHHHHcCCCE
Confidence 778888899999999999865441111100111 111135667777654 112233443211 34688888999987
Q ss_pred e
Q 026651 210 F 210 (235)
Q Consensus 210 y 210 (235)
+
T Consensus 84 v 84 (211)
T cd00429 84 I 84 (211)
T ss_pred E
Confidence 4
No 489
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=43.73 E-value=1.4e+02 Score=27.47 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=48.4
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEe-ecCC---CCCHHHHHHHHh
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL-TSDF---RGDLRAVETLVH 204 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl-~sdg---~l~~e~l~~L~e 204 (235)
.+.++.++.|+.++++|++.++|+...--.++ -+.+.+-+++|-+..|++-|=+. .|.. .++.+.+++|.+
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~---~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMWLPLD---VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcCCCCC---HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 67799999999999999998888876431122 35666666676655433334444 4433 567899999974
No 490
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=43.71 E-value=2.1e+02 Score=25.86 Aligned_cols=75 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEe----ecCCCCCHHHHHHHHhcCC
Q 026651 132 DPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECL----TSDFRGDLRAVETLVHSGL 207 (235)
Q Consensus 132 d~eE~~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl----~sdg~l~~e~l~~L~eAG~ 207 (235)
+.+|..+.|+.++++|++.+++++..-..+++ +.+.+-+++|-+..|++.|=+. .+-..++.+.+.+|.+ -+
T Consensus 81 ~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~---~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~-~p 156 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPFYYKFSF---EEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE-IP 156 (288)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCH---HHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc-CC
Q ss_pred Cee
Q 026651 208 DVF 210 (235)
Q Consensus 208 d~y 210 (235)
.+.
T Consensus 157 niv 159 (288)
T cd00954 157 NVI 159 (288)
T ss_pred CEE
No 491
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=43.68 E-value=1.7e+02 Score=27.21 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhh-CCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 167 GHFARTVKAMKKQ-KPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~-~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
+.+.++.++++.. .|. +.+.+|.|+ +++.++.+++.|+|+|
T Consensus 229 ~~~~~~~~~l~~~g~~~--~~ieaSGgI-~~~~i~~~a~~gvD~i 270 (302)
T cd01571 229 YLIREVRWALDIRGYKH--VKIFVSGGL-DEEDIKELEDVGVDAF 270 (302)
T ss_pred HHHHHHHHHHHhCCCCC--eEEEEeCCC-CHHHHHHHHHcCCCEE
Confidence 3445555556554 354 456777776 9999999999999998
No 492
>PRK07308 flavodoxin; Validated
Probab=43.63 E-value=75 Score=25.41 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHc---CCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceE----EEeecCCCCCHHHHHHHHhcC
Q 026651 134 MEPENTAKAIASW---GVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMV----ECLTSDFRGDLRAVETLVHSG 206 (235)
Q Consensus 134 eE~~~~A~aa~~~---Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~i----evl~sdg~l~~e~l~~L~eAG 206 (235)
+......+..... |..+.|+-+|++. ..++++.++.|.+....... +.+.-++.-+++.++++.+.|
T Consensus 66 ~~~~~fl~~l~~~~l~~k~~~vfG~Gd~~------y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~ 139 (146)
T PRK07308 66 DEIVDFYEDLADLDLSGKIYGVVGSGDTF------YDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFA 139 (146)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeeCCCC------HHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHH
Confidence 3444444444444 4458999999762 45777777777553222222 344446677888888887765
No 493
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=43.57 E-value=61 Score=29.74 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEee----cCC-----CCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCC-----CH
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTSV----DRD-----DIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRG-----DL 196 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTSg----~Rd-----dL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l-----~~ 196 (235)
-++++..+.|+.+++.|.+-+=+-.+ .+. ..-....+.+.+++++|++..+ ..|-+=+..|.- ..
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~g~~~~~~~~~ 150 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRIGWDDAHINAV 150 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEcccCCCcchHH
Confidence 47899999999999998763322211 111 1111234788899999987642 234333333321 24
Q ss_pred HHHHHHHhcCCCeecc
Q 026651 197 RAVETLVHSGLDVFAH 212 (235)
Q Consensus 197 e~l~~L~eAG~d~ynH 212 (235)
+-++.|.++|++.++-
T Consensus 151 ~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 151 EAARIAEDAGAQAVTL 166 (319)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 5668899999998863
No 494
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=43.49 E-value=90 Score=25.06 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=36.9
Q ss_pred EEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecC-------------CCCCHHHHHHHHhcCCCee
Q 026651 151 IVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSD-------------FRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 151 ~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sd-------------g~l~~e~l~~L~eAG~d~y 210 (235)
.+|.=|.++ +...+.|....+.+++..|+..|+.+-.- .--=.+.|++|.+.|.+++
T Consensus 4 llv~fGS~~---~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V 73 (127)
T cd03412 4 LLVSFGTSY---PTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEV 73 (127)
T ss_pred EEEeCCCCC---HHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEE
Confidence 344555553 24455677777788888888888766221 1112788889999988764
No 495
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=43.25 E-value=58 Score=30.21 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHHHhcCCCee
Q 026651 167 GHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 167 ~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.-+.++.+.+|+... ..|.+++..|.++.++.++|.++|++.+
T Consensus 225 ~Tl~~aa~~Lk~~GA-~~V~~~~tHgvfs~~a~~~l~~~~i~~i 267 (301)
T PRK07199 225 RTLIEAARQLRAAGA-ASPDCVVVHALFAGDAYSALAAAGIARV 267 (301)
T ss_pred HHHHHHHHHHHHCCC-cEEEEEEEeeeCChHHHHHHHhCCCCEE
Confidence 357788888887643 4789999999999999999999998754
No 496
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=43.08 E-value=1.7e+02 Score=26.42 Aligned_cols=57 Identities=18% Similarity=0.101 Sum_probs=28.5
Q ss_pred HHHHHHHcCCc--EEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCCCCHHHHHHH
Q 026651 139 TAKAIASWGVD--YIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFRGDLRAVETL 202 (235)
Q Consensus 139 ~A~aa~~~Gl~--y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~l~~e~l~~L 202 (235)
..+.+++.|+. +.+.++-+- + .+.+.+.++++.+..++ .|.++-..|.++++++..+
T Consensus 117 ~i~~a~~~G~~v~~~~eda~r~---~---~~~l~~~~~~~~~~g~~-~i~l~Dt~G~~~P~~v~~~ 175 (262)
T cd07948 117 VIEFVKSKGIEVRFSSEDSFRS---D---LVDLLRVYRAVDKLGVN-RVGIADTVGIATPRQVYEL 175 (262)
T ss_pred HHHHHHHCCCeEEEEEEeeCCC---C---HHHHHHHHHHHHHcCCC-EEEECCcCCCCCHHHHHHH
Confidence 34566666654 333333332 1 33455555555543332 4555666666666665443
No 497
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=42.97 E-value=1.7e+02 Score=26.71 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHHHcCCcEEEEEe--ecCC--CCCC-------------Cc------hHHHHHHHHHHHhhCCCceEEE
Q 026651 131 PDPMEPENTAKAIASWGVDYIVLTS--VDRD--DIPD-------------GG------SGHFARTVKAMKKQKPDIMVEC 187 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y~VVTS--g~Rd--dL~D-------------~g------a~~~a~~Ir~Ik~~~p~~~iev 187 (235)
++.+++.+.|+++.+.|++.++++- ..+. |+.. ++ ...-.+.|.++++..+ -.+.+
T Consensus 177 ~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~-~~ipI 255 (299)
T cd02940 177 PNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPE-PGLPI 255 (299)
T ss_pred CCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcC-CCCcE
Confidence 4556888999999999999766532 1100 0100 01 1122567777777542 14788
Q ss_pred eecCCCCCHHHHHHHHhcCCCee
Q 026651 188 LTSDFRGDLRAVETLVHSGLDVF 210 (235)
Q Consensus 188 l~sdg~l~~e~l~~L~eAG~d~y 210 (235)
.+.-|.-+.+++.+...+|.+.+
T Consensus 256 ig~GGI~~~~da~~~l~aGA~~V 278 (299)
T cd02940 256 SGIGGIESWEDAAEFLLLGASVV 278 (299)
T ss_pred EEECCCCCHHHHHHHHHcCCChh
Confidence 99999999998888888998754
No 498
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=42.92 E-value=1.1e+02 Score=27.23 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=43.2
Q ss_pred CCchhHHHHHHHHHHcCCcE------E----EEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCC--CCHHH
Q 026651 131 PDPMEPENTAKAIASWGVDY------I----VLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--GDLRA 198 (235)
Q Consensus 131 ld~eE~~~~A~aa~~~Gl~y------~----VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~--l~~e~ 198 (235)
-|+++..+.|+.+.+.+ +. | |+..|.+..|- .+-+.+.+.+++||+. ++.|-+=+..|. -..+.
T Consensus 82 ~~~~~~~~aa~~~~~~~-~~ielN~gCP~~~v~~~g~G~~Ll-~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~l 157 (233)
T cd02911 82 SSLEPLLNAAALVAKNA-AILEINAHCRQPEMVEAGAGEALL-KDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEEL 157 (233)
T ss_pred CCHHHHHHHHHHHhhcC-CEEEEECCCCcHHHhcCCcchHHc-CCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHH
Confidence 45677778888777643 21 1 12222221121 1257788888888863 233444444443 23556
Q ss_pred HHHHHhcCCCeec
Q 026651 199 VETLVHSGLDVFA 211 (235)
Q Consensus 199 l~~L~eAG~d~yn 211 (235)
++.|.++|+|.+|
T Consensus 158 a~~l~~aG~d~ih 170 (233)
T cd02911 158 ARLIEKAGADIIH 170 (233)
T ss_pred HHHHHHhCCCEEE
Confidence 6778889988774
No 499
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=42.90 E-value=1.6e+02 Score=26.62 Aligned_cols=77 Identities=8% Similarity=0.068 Sum_probs=49.3
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEEEeecCC----------------CCC-----------CCchHHHHHHHHHHHhhCC
Q 026651 129 APPDPMEPENTAKAIASWGVDYIVLTSVDRD----------------DIP-----------DGGSGHFARTVKAMKKQKP 181 (235)
Q Consensus 129 ~~ld~eE~~~~A~aa~~~Gl~y~VVTSg~Rd----------------dL~-----------D~ga~~~a~~Ir~Ik~~~p 181 (235)
+.+-.+.+.+.++++++.|+.-++.|+|--. ||+ ....+.+-+.++.+++...
T Consensus 94 P~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l~~~g~ 173 (260)
T COG1180 94 PTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADNEPVLENLELLADLGV 173 (260)
T ss_pred chhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCcHHHHHHHHHHHcCCC
Confidence 4578889999999999999999999998532 111 1122445555666655322
Q ss_pred CceEE-EeecCCCCCHHHHHHHHhc
Q 026651 182 DIMVE-CLTSDFRGDLRAVETLVHS 205 (235)
Q Consensus 182 ~~~ie-vl~sdg~l~~e~l~~L~eA 205 (235)
.+.+- +++|.+..+++.+++|++.
T Consensus 174 ~ve~r~lviPg~~d~~e~i~~i~~~ 198 (260)
T COG1180 174 HVEIRTLVIPGYNDDEEEIRELAEF 198 (260)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHH
Confidence 22222 2455555788888877764
No 500
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=42.79 E-value=1.9e+02 Score=23.90 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCcEEEEEeecCCCCCCCchHHHHHHHHHHHhhCCCceEEEeecCCC--CCHHH---HHHHHhcCCCee
Q 026651 137 ENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMKKQKPDIMVECLTSDFR--GDLRA---VETLVHSGLDVF 210 (235)
Q Consensus 137 ~~~A~aa~~~Gl~y~VVTSg~RddL~D~ga~~~a~~Ir~Ik~~~p~~~ievl~sdg~--l~~e~---l~~L~eAG~d~y 210 (235)
.+++++|.+.+++.+.++|-.. .-...+.++++++++....- +-+.+--.. ..++. .++|++.|+++.
T Consensus 42 e~~v~aa~~~~adiVglS~l~~-----~~~~~~~~~~~~l~~~gl~~-~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~v 114 (134)
T TIGR01501 42 EEFIKAAIETKADAILVSSLYG-----HGEIDCKGLRQKCDEAGLEG-ILLYVGGNLVVGKQDFPDVEKRFKEMGFDRV 114 (134)
T ss_pred HHHHHHHHHcCCCEEEEecccc-----cCHHHHHHHHHHHHHCCCCC-CEEEecCCcCcChhhhHHHHHHHHHcCCCEE
Confidence 3445577778888888877543 23567888999998874321 223332221 22332 347999998854
Done!