Query 026652
Match_columns 235
No_of_seqs 311 out of 1877
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 2.4E-18 8.3E-23 126.1 5.5 80 150-231 11-90 (91)
2 1x4j_A Ring finger protein 38; 99.7 3.6E-18 1.2E-22 120.5 2.3 71 159-232 4-74 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 1.5E-16 5E-21 105.3 4.1 52 178-229 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 4.3E-16 1.5E-20 109.3 4.2 55 177-232 12-66 (74)
5 2kiz_A E3 ubiquitin-protein li 99.6 7.6E-16 2.6E-20 106.6 5.2 55 177-232 11-65 (69)
6 2ect_A Ring finger protein 126 99.6 6.2E-16 2.1E-20 109.5 4.0 55 177-232 12-66 (78)
7 2ecl_A Ring-box protein 2; RNF 99.6 1.3E-15 4.3E-20 109.3 4.0 52 179-230 14-76 (81)
8 3ng2_A RNF4, snurf, ring finge 99.5 4.1E-15 1.4E-19 103.1 2.9 55 177-232 7-65 (71)
9 2ecm_A Ring finger and CHY zin 99.5 1E-14 3.5E-19 96.2 4.3 50 179-229 4-54 (55)
10 1v87_A Deltex protein 2; ring- 99.5 1.3E-14 4.6E-19 109.9 4.8 53 179-232 24-96 (114)
11 2ecn_A Ring finger protein 141 99.5 5.3E-15 1.8E-19 102.5 2.3 54 177-235 12-65 (70)
12 2ea6_A Ring finger protein 4; 99.5 7.8E-15 2.7E-19 101.0 2.6 53 177-230 12-68 (69)
13 2xeu_A Ring finger protein 4; 99.5 1.2E-14 4.1E-19 98.6 2.9 53 179-232 2-58 (64)
14 3dpl_R Ring-box protein 1; ubi 99.5 4.3E-14 1.5E-18 106.5 4.6 50 179-229 36-100 (106)
15 1chc_A Equine herpes virus-1 r 99.4 6.5E-14 2.2E-18 96.4 3.4 49 179-230 4-52 (68)
16 2djb_A Polycomb group ring fin 99.4 9.3E-14 3.2E-18 96.9 3.7 53 177-232 12-64 (72)
17 2ct2_A Tripartite motif protei 99.4 1.5E-13 5.3E-18 98.9 4.5 54 177-231 12-69 (88)
18 2d8s_A Cellular modulator of i 99.4 2.1E-13 7.1E-18 97.7 3.9 53 178-232 13-72 (80)
19 2d8t_A Dactylidin, ring finger 99.4 1E-13 3.4E-18 96.5 2.1 49 178-230 13-61 (71)
20 2ecy_A TNF receptor-associated 99.4 3.2E-13 1.1E-17 92.5 4.5 52 177-232 12-64 (66)
21 2yur_A Retinoblastoma-binding 99.4 2.7E-13 9.2E-18 95.2 3.7 53 177-232 12-66 (74)
22 2ysl_A Tripartite motif-contai 99.3 4.6E-13 1.6E-17 93.2 3.5 52 177-232 17-71 (73)
23 4ayc_A E3 ubiquitin-protein li 99.3 3E-13 1E-17 106.1 2.6 50 178-231 51-100 (138)
24 4a0k_B E3 ubiquitin-protein li 99.3 1.2E-13 4E-18 105.8 0.2 51 179-229 47-111 (117)
25 2csy_A Zinc finger protein 183 99.3 4.2E-13 1.4E-17 95.6 2.9 48 178-229 13-60 (81)
26 1g25_A CDK-activating kinase a 99.3 1.2E-12 4.2E-17 89.3 4.2 53 179-232 2-57 (65)
27 3lrq_A E3 ubiquitin-protein li 99.3 3.7E-13 1.2E-17 100.0 1.6 52 177-231 19-71 (100)
28 2y43_A E3 ubiquitin-protein li 99.3 6.5E-13 2.2E-17 98.2 2.9 51 177-230 19-69 (99)
29 4ap4_A E3 ubiquitin ligase RNF 99.3 7.3E-13 2.5E-17 102.0 3.2 53 178-231 5-61 (133)
30 1t1h_A Gspef-atpub14, armadill 99.3 9.6E-13 3.3E-17 92.9 3.5 51 177-231 5-56 (78)
31 2ecw_A Tripartite motif-contai 99.3 1.6E-12 5.6E-17 92.5 3.9 51 177-231 16-72 (85)
32 2egp_A Tripartite motif-contai 99.3 6.7E-13 2.3E-17 93.7 1.5 51 177-231 9-66 (79)
33 2ecv_A Tripartite motif-contai 99.3 2.3E-12 7.9E-17 91.8 4.1 51 177-231 16-72 (85)
34 2ckl_A Polycomb group ring fin 99.2 4.1E-12 1.4E-16 95.3 4.7 52 177-231 12-63 (108)
35 1e4u_A Transcriptional repress 99.2 6.7E-12 2.3E-16 89.3 4.8 57 177-234 8-66 (78)
36 3ztg_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 92.7 3.4 50 177-229 10-61 (92)
37 2ct0_A Non-SMC element 1 homol 99.2 8.5E-12 2.9E-16 87.8 4.9 52 178-232 13-66 (74)
38 2ysj_A Tripartite motif-contai 99.2 6E-12 2.1E-16 85.2 3.9 44 177-224 17-63 (63)
39 3fl2_A E3 ubiquitin-protein li 99.2 4.1E-12 1.4E-16 97.7 3.2 50 177-230 49-99 (124)
40 4ap4_A E3 ubiquitin ligase RNF 99.2 5.3E-12 1.8E-16 97.1 3.0 53 178-231 70-126 (133)
41 2ecj_A Tripartite motif-contai 99.2 8.7E-12 3E-16 82.7 3.6 44 177-224 12-58 (58)
42 1jm7_A BRCA1, breast cancer ty 99.2 9E-12 3.1E-16 93.6 3.9 50 178-231 19-71 (112)
43 2ckl_B Ubiquitin ligase protei 99.2 1.2E-11 3.9E-16 99.7 4.7 50 178-230 52-102 (165)
44 1rmd_A RAG1; V(D)J recombinati 99.2 5.8E-12 2E-16 95.6 2.3 51 177-231 20-71 (116)
45 1z6u_A NP95-like ring finger p 99.1 1.7E-11 5.9E-16 97.6 2.9 51 177-231 75-126 (150)
46 3hct_A TNF receptor-associated 99.1 1.4E-11 4.9E-16 93.9 1.9 51 177-231 15-66 (118)
47 2kre_A Ubiquitin conjugation f 99.1 2.1E-11 7.3E-16 90.7 2.7 51 177-231 26-76 (100)
48 2vje_A E3 ubiquitin-protein li 99.1 1.5E-11 5E-16 84.1 1.5 52 178-231 6-58 (64)
49 2kr4_A Ubiquitin conjugation f 99.1 2.6E-11 8.8E-16 87.5 2.7 51 177-231 11-61 (85)
50 3l11_A E3 ubiquitin-protein li 99.1 1.2E-11 4E-16 93.8 0.2 49 178-230 13-62 (115)
51 1wgm_A Ubiquitin conjugation f 99.1 4.2E-11 1.4E-15 88.8 3.2 50 178-231 20-70 (98)
52 4ic3_A E3 ubiquitin-protein li 99.1 1.9E-11 6.6E-16 85.8 0.7 49 177-233 21-70 (74)
53 1bor_A Transcription factor PM 99.0 5.1E-11 1.8E-15 79.1 2.0 49 178-233 4-52 (56)
54 2vje_B MDM4 protein; proto-onc 99.0 4.5E-11 1.5E-15 81.4 1.4 51 179-231 6-57 (63)
55 3knv_A TNF receptor-associated 99.0 6.5E-11 2.2E-15 93.3 2.3 49 177-229 28-77 (141)
56 1jm7_B BARD1, BRCA1-associated 99.0 1.3E-10 4.3E-15 88.5 1.9 50 177-231 19-68 (117)
57 3k1l_B Fancl; UBC, ring, RWD, 99.0 1.2E-10 4.1E-15 103.4 2.0 54 178-231 306-374 (381)
58 2y1n_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 102.5 3.7 48 180-231 332-380 (389)
59 2ecg_A Baculoviral IAP repeat- 98.9 4E-10 1.4E-14 79.1 2.8 50 178-235 23-73 (75)
60 3hcs_A TNF receptor-associated 98.9 5.6E-10 1.9E-14 90.0 2.0 51 177-231 15-66 (170)
61 2yu4_A E3 SUMO-protein ligase 98.8 6.8E-10 2.3E-14 81.4 2.0 47 178-227 5-59 (94)
62 2c2l_A CHIP, carboxy terminus 98.8 9E-10 3.1E-14 94.6 2.7 50 178-231 206-256 (281)
63 2ea5_A Cell growth regulator w 98.8 1.6E-09 5.5E-14 74.8 2.9 48 178-233 13-61 (68)
64 2yho_A E3 ubiquitin-protein li 98.8 6.2E-10 2.1E-14 79.2 0.6 46 178-231 16-62 (79)
65 1wim_A KIAA0161 protein; ring 98.8 1.8E-09 6E-14 78.9 2.1 51 179-230 4-66 (94)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.7 6E-09 2.1E-13 70.2 3.8 50 178-230 4-59 (60)
67 2f42_A STIP1 homology and U-bo 98.7 4.8E-09 1.6E-13 85.7 3.0 50 178-231 104-154 (179)
68 3t6p_A Baculoviral IAP repeat- 98.6 6.4E-09 2.2E-13 93.2 0.7 49 177-233 292-341 (345)
69 2bay_A PRE-mRNA splicing facto 98.6 1.6E-08 5.6E-13 68.3 1.9 48 181-231 4-51 (61)
70 3htk_C E3 SUMO-protein ligase 98.5 1.9E-08 6.5E-13 86.5 2.1 49 179-230 180-232 (267)
71 3vk6_A E3 ubiquitin-protein li 98.3 3.3E-07 1.1E-11 67.3 3.5 46 182-230 3-49 (101)
72 3nw0_A Non-structural maintena 98.1 3.5E-06 1.2E-10 71.7 5.0 49 180-231 180-230 (238)
73 2ko5_A Ring finger protein Z; 96.1 0.0022 7.6E-08 46.3 1.8 50 177-231 25-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.3 0.0082 2.8E-07 43.4 2.5 36 179-215 2-38 (101)
75 2lri_C Autoimmune regulator; Z 95.3 0.014 4.8E-07 39.5 3.4 48 178-229 10-61 (66)
76 1wil_A KIAA1045 protein; ring 94.3 0.039 1.3E-06 39.0 3.6 36 177-214 12-47 (89)
77 1we9_A PHD finger family prote 93.9 0.019 6.5E-07 38.2 1.3 52 178-229 4-60 (64)
78 2l5u_A Chromodomain-helicase-D 93.6 0.041 1.4E-06 36.4 2.5 47 177-227 8-58 (61)
79 2puy_A PHD finger protein 21A; 92.4 0.018 6.2E-07 37.9 -0.6 51 179-233 4-58 (60)
80 1mm2_A MI2-beta; PHD, zinc fin 91.9 0.036 1.2E-06 36.7 0.4 48 178-229 7-58 (61)
81 2k16_A Transcription initiatio 91.7 0.06 2.1E-06 36.9 1.4 52 179-231 17-72 (75)
82 1fp0_A KAP-1 corepressor; PHD 90.8 0.088 3E-06 37.6 1.6 49 177-229 22-74 (88)
83 3m62_A Ubiquitin conjugation f 90.1 0.15 5.2E-06 50.9 3.1 50 178-231 889-939 (968)
84 2yql_A PHD finger protein 21A; 89.8 0.041 1.4E-06 35.7 -0.9 45 178-226 7-55 (56)
85 2kgg_A Histone demethylase jar 89.5 0.31 1E-05 30.9 3.2 44 182-225 4-52 (52)
86 1xwh_A Autoimmune regulator; P 89.5 0.07 2.4E-06 35.8 0.1 48 178-229 6-57 (66)
87 1f62_A Transcription factor WS 89.5 0.18 6.2E-06 31.7 2.1 44 182-226 2-49 (51)
88 2yt5_A Metal-response element- 88.7 0.067 2.3E-06 35.6 -0.4 52 178-229 4-63 (66)
89 1z60_A TFIIH basal transcripti 88.6 0.32 1.1E-05 32.0 2.8 43 181-224 16-58 (59)
90 2vpb_A Hpygo1, pygopus homolog 88.4 0.34 1.2E-05 32.4 2.9 35 178-212 6-41 (65)
91 2cs3_A Protein C14ORF4, MY039 87.9 0.59 2E-05 32.6 3.9 40 178-218 13-53 (93)
92 1weu_A Inhibitor of growth fam 87.6 0.36 1.2E-05 34.6 2.9 47 179-230 35-88 (91)
93 3v43_A Histone acetyltransfera 87.5 0.17 5.9E-06 37.4 1.1 45 182-226 63-111 (112)
94 2ku3_A Bromodomain-containing 87.5 0.17 5.7E-06 34.6 0.9 51 177-227 13-66 (71)
95 2l43_A N-teminal domain from h 86.9 0.18 6.2E-06 35.8 0.9 53 178-230 23-78 (88)
96 1wep_A PHF8; structural genomi 86.2 0.53 1.8E-05 32.5 3.0 48 180-228 12-64 (79)
97 1wen_A Inhibitor of growth fam 84.5 0.63 2.2E-05 31.6 2.7 47 179-230 15-68 (71)
98 1wem_A Death associated transc 82.8 0.45 1.6E-05 32.5 1.4 50 180-231 16-74 (76)
99 1wee_A PHD finger family prote 82.3 0.22 7.4E-06 33.8 -0.4 51 179-230 15-69 (72)
100 2ri7_A Nucleosome-remodeling f 82.1 0.36 1.2E-05 38.2 0.7 49 178-227 6-59 (174)
101 3zyq_A Hepatocyte growth facto 80.9 1.1 3.7E-05 37.2 3.3 53 179-231 163-223 (226)
102 1wev_A Riken cDNA 1110020M19; 80.5 0.2 7E-06 35.5 -1.1 53 178-230 14-75 (88)
103 2ysm_A Myeloid/lymphoid or mix 80.1 0.53 1.8E-05 34.5 1.0 38 178-216 5-42 (111)
104 3o70_A PHD finger protein 13; 79.3 0.42 1.4E-05 32.2 0.2 47 178-226 17-66 (68)
105 3c6w_A P28ING5, inhibitor of g 78.8 0.58 2E-05 30.6 0.8 43 179-226 8-57 (59)
106 3i2d_A E3 SUMO-protein ligase 78.5 1.2 4.1E-05 39.8 3.0 47 180-230 249-300 (371)
107 2lbm_A Transcriptional regulat 78.4 2.3 7.8E-05 32.9 4.2 45 178-226 61-116 (142)
108 3v43_A Histone acetyltransfera 78.0 3.3 0.00011 30.3 4.8 34 179-212 4-42 (112)
109 2e6r_A Jumonji/ARID domain-con 77.8 0.24 8.4E-06 35.4 -1.4 49 178-227 14-66 (92)
110 4fo9_A E3 SUMO-protein ligase 77.8 1.3 4.5E-05 39.4 3.0 47 180-230 215-266 (360)
111 4gne_A Histone-lysine N-methyl 77.7 1.3 4.6E-05 32.5 2.6 49 177-231 12-66 (107)
112 2xb1_A Pygopus homolog 2, B-ce 77.6 1.1 3.7E-05 32.8 2.0 49 180-228 3-62 (105)
113 1weo_A Cellulose synthase, cat 77.4 5.6 0.00019 28.2 5.6 51 179-229 15-69 (93)
114 2kwj_A Zinc finger protein DPF 77.3 0.63 2.1E-05 34.4 0.7 34 181-214 2-41 (114)
115 1wew_A DNA-binding family prot 76.8 1 3.4E-05 31.0 1.6 51 179-231 15-76 (78)
116 2vnf_A ING 4, P29ING4, inhibit 76.7 0.68 2.3E-05 30.3 0.6 43 179-226 9-58 (60)
117 2lv9_A Histone-lysine N-methyl 76.1 0.78 2.7E-05 33.1 0.9 45 180-226 28-75 (98)
118 3shb_A E3 ubiquitin-protein li 75.7 0.49 1.7E-05 32.7 -0.3 45 182-227 28-77 (77)
119 2e6s_A E3 ubiquitin-protein li 73.0 1 3.4E-05 31.1 0.8 45 181-226 27-76 (77)
120 2g6q_A Inhibitor of growth pro 72.7 1 3.6E-05 29.6 0.8 44 179-227 10-60 (62)
121 3t7l_A Zinc finger FYVE domain 72.6 2.6 8.8E-05 29.7 2.9 36 180-215 20-55 (90)
122 1vfy_A Phosphatidylinositol-3- 71.7 2.7 9.1E-05 28.4 2.7 34 181-214 12-45 (73)
123 1joc_A EEA1, early endosomal a 71.6 2.5 8.7E-05 31.7 2.8 35 180-214 69-103 (125)
124 1zbd_B Rabphilin-3A; G protein 71.6 2 6.7E-05 32.8 2.2 34 179-212 54-88 (134)
125 3ql9_A Transcriptional regulat 70.5 5.4 0.00018 30.2 4.4 46 178-227 55-111 (129)
126 1z2q_A LM5-1; membrane protein 70.1 2.8 9.7E-05 29.1 2.6 53 179-231 20-80 (84)
127 2yw8_A RUN and FYVE domain-con 69.7 2.7 9.2E-05 29.0 2.4 51 179-229 18-74 (82)
128 3asl_A E3 ubiquitin-protein li 69.6 1.1 3.7E-05 30.2 0.3 45 182-227 20-69 (70)
129 2kwj_A Zinc finger protein DPF 68.5 0.56 1.9E-05 34.7 -1.5 49 182-231 60-112 (114)
130 1y02_A CARP2, FYVE-ring finger 68.1 0.73 2.5E-05 34.6 -0.9 47 180-226 19-65 (120)
131 1dvp_A HRS, hepatocyte growth 67.5 2.5 8.5E-05 34.6 2.1 36 179-214 160-195 (220)
132 2jmi_A Protein YNG1, ING1 homo 67.0 1.6 5.5E-05 31.1 0.8 44 178-226 24-75 (90)
133 1wfk_A Zinc finger, FYVE domai 66.8 3.4 0.00011 29.1 2.4 51 179-229 8-65 (88)
134 1x4u_A Zinc finger, FYVE domai 66.3 3.3 0.00011 28.7 2.3 36 179-214 13-48 (84)
135 3ask_A E3 ubiquitin-protein li 65.2 1.9 6.4E-05 35.9 1.0 46 181-227 175-225 (226)
136 2ysm_A Myeloid/lymphoid or mix 65.2 1.6 5.4E-05 31.8 0.5 47 182-229 56-106 (111)
137 2jne_A Hypothetical protein YF 64.0 1.9 6.3E-05 31.2 0.6 40 181-229 33-72 (101)
138 2rsd_A E3 SUMO-protein ligase 62.8 0.63 2.1E-05 31.2 -2.0 47 179-227 9-65 (68)
139 2cu8_A Cysteine-rich protein 2 60.2 3.3 0.00011 27.5 1.3 40 180-230 9-48 (76)
140 3mpx_A FYVE, rhogef and PH dom 56.6 2.3 7.9E-05 38.0 0.0 50 180-229 375-431 (434)
141 3o7a_A PHD finger protein 13 v 56.6 2.3 7.8E-05 26.7 -0.0 41 185-226 8-51 (52)
142 3kqi_A GRC5, PHD finger protei 56.5 3.5 0.00012 27.9 0.9 47 182-228 11-62 (75)
143 2zet_C Melanophilin; complex, 54.9 7.1 0.00024 30.4 2.6 47 179-226 67-116 (153)
144 1iml_A CRIP, cysteine rich int 54.4 4.2 0.00014 27.0 1.1 42 181-227 28-70 (76)
145 2gmg_A Hypothetical protein PF 54.3 2.5 8.4E-05 31.0 -0.2 23 201-228 72-94 (105)
146 2co8_A NEDD9 interacting prote 52.8 8.2 0.00028 26.1 2.4 41 179-230 14-54 (82)
147 1zfo_A LAsp-1; LIM domain, zin 52.4 8.3 0.00028 21.4 1.9 27 181-210 4-30 (31)
148 2o35_A Hypothetical protein DU 51.2 5.9 0.0002 28.6 1.4 11 206-216 43-53 (105)
149 3fyb_A Protein of unknown func 51.1 6 0.0002 28.6 1.4 11 206-216 42-52 (104)
150 2jrp_A Putative cytoplasmic pr 51.0 5.8 0.0002 27.6 1.3 15 181-195 3-17 (81)
151 3mjh_B Early endosome antigen 50.5 2.3 7.8E-05 24.7 -0.7 17 180-196 5-21 (34)
152 1a7i_A QCRP2 (LIM1); LIM domai 50.2 4 0.00014 27.5 0.4 38 181-229 8-45 (81)
153 1wyh_A SLIM 2, skeletal muscle 49.5 9.5 0.00032 24.7 2.2 40 181-230 6-45 (72)
154 2d8z_A Four and A half LIM dom 47.9 9.2 0.00031 24.7 1.9 35 182-228 7-41 (70)
155 2dj7_A Actin-binding LIM prote 47.5 7.9 0.00027 26.1 1.6 40 179-229 14-53 (80)
156 1x4k_A Skeletal muscle LIM-pro 47.2 11 0.00038 24.4 2.3 39 181-229 6-44 (72)
157 2d8y_A Eplin protein; LIM doma 46.4 12 0.00041 25.7 2.4 27 181-210 16-42 (91)
158 1g47_A Pinch protein; LIM doma 45.8 9.3 0.00032 25.1 1.7 42 179-230 10-51 (77)
159 3pwf_A Rubrerythrin; non heme 44.9 9.8 0.00034 30.0 2.0 35 4-44 13-48 (170)
160 2a20_A Regulating synaptic mem 44.3 1.9 6.6E-05 28.2 -1.9 48 178-226 7-59 (62)
161 3a1b_A DNA (cytosine-5)-methyl 44.2 17 0.00057 28.5 3.1 34 179-216 78-113 (159)
162 2ct7_A Ring finger protein 31; 44.1 2.1 7.2E-05 29.8 -1.9 41 183-223 28-72 (86)
163 1nyp_A Pinch protein; LIM doma 44.1 9.2 0.00031 24.4 1.4 38 181-230 6-43 (66)
164 1wd2_A Ariadne-1 protein homol 44.1 5.5 0.00019 25.9 0.3 38 180-217 6-47 (60)
165 1x4l_A Skeletal muscle LIM-pro 42.8 14 0.00049 23.9 2.3 39 181-229 6-46 (72)
166 1x61_A Thyroid receptor intera 42.1 15 0.00053 23.7 2.4 10 182-191 7-16 (72)
167 2l4z_A DNA endonuclease RBBP8, 41.9 12 0.00039 27.7 1.9 39 180-229 61-99 (123)
168 1lko_A Rubrerythrin all-iron(I 41.7 8.6 0.0003 30.7 1.2 9 219-227 172-180 (191)
169 1x64_A Alpha-actinin-2 associa 41.7 17 0.0006 24.7 2.7 40 179-230 24-63 (89)
170 2jmo_A Parkin; IBR, E3 ligase, 41.7 4.3 0.00015 27.9 -0.6 40 180-221 25-73 (80)
171 1x63_A Skeletal muscle LIM-pro 41.4 17 0.00059 24.1 2.6 40 181-230 16-55 (82)
172 2cor_A Pinch protein; LIM doma 40.7 14 0.00049 24.7 2.0 39 180-230 15-53 (79)
173 2d8x_A Protein pinch; LIM doma 40.7 13 0.00045 24.0 1.8 11 181-191 6-16 (70)
174 2cur_A Skeletal muscle LIM-pro 40.4 12 0.00041 24.0 1.6 10 182-191 7-16 (69)
175 2jvx_A NF-kappa-B essential mo 39.9 8.8 0.0003 21.1 0.7 12 219-230 4-15 (28)
176 1x62_A C-terminal LIM domain p 39.4 16 0.00056 24.2 2.2 39 179-229 14-52 (79)
177 3ldt_A Outer membrane protein, 39.3 6.5 0.00022 30.7 0.1 14 55-68 8-21 (169)
178 2lcq_A Putative toxin VAPC6; P 39.1 8.5 0.00029 29.8 0.7 27 197-229 133-159 (165)
179 1wig_A KIAA1808 protein; LIM d 39.0 21 0.00072 23.4 2.7 25 182-210 7-31 (73)
180 2pv0_B DNA (cytosine-5)-methyl 38.5 19 0.00066 32.2 3.0 44 179-226 92-147 (386)
181 2dar_A PDZ and LIM domain prot 38.5 11 0.00038 25.8 1.2 39 180-230 25-63 (90)
182 1x68_A FHL5 protein; four-and- 38.5 18 0.00061 23.8 2.3 38 181-229 6-46 (76)
183 3ldt_A Outer membrane protein, 37.2 6.2 0.00021 30.9 -0.3 14 54-67 3-16 (169)
184 2kpi_A Uncharacterized protein 36.9 14 0.00047 23.7 1.4 29 178-206 8-38 (56)
185 1m3v_A FLIN4, fusion of the LI 36.4 26 0.0009 25.4 3.1 48 181-230 33-81 (122)
186 3vhs_A ATPase wrnip1; zinc fin 36.0 9.8 0.00034 20.5 0.4 10 220-229 8-17 (29)
187 1yuz_A Nigerythrin; rubrythrin 34.9 17 0.00059 29.3 2.0 25 196-227 171-195 (202)
188 2xjy_A Rhombotin-2; oncoprotei 33.9 27 0.00093 25.3 2.9 9 220-228 96-104 (131)
189 3f6q_B LIM and senescent cell 33.6 21 0.00071 22.8 1.9 42 180-231 11-52 (72)
190 1x6a_A LIMK-2, LIM domain kina 33.1 24 0.00083 23.3 2.3 37 181-229 16-52 (81)
191 2cuq_A Four and A half LIM dom 32.8 24 0.00083 23.2 2.2 37 181-229 16-52 (80)
192 1j2o_A FLIN2, fusion of rhombo 32.4 31 0.0011 24.7 2.9 34 181-216 31-65 (114)
193 2xqn_T Testin, TESS; metal-bin 32.1 38 0.0013 24.4 3.4 45 181-230 31-75 (126)
194 3kv5_D JMJC domain-containing 32.0 11 0.00037 34.9 0.3 46 181-227 38-88 (488)
195 1x4i_A Inhibitor of growth pro 31.8 24 0.00081 23.5 2.0 44 180-228 6-56 (70)
196 2lq6_A Bromodomain-containing 31.7 33 0.0011 23.8 2.8 33 180-213 17-50 (87)
197 1v6g_A Actin binding LIM prote 31.6 21 0.0007 23.7 1.7 37 181-229 16-52 (81)
198 2ehe_A Four and A half LIM dom 30.8 29 0.00098 23.0 2.3 40 181-230 16-55 (82)
199 4bbq_A Lysine-specific demethy 30.7 5.1 0.00018 29.2 -1.7 46 182-227 61-114 (117)
200 2csz_A Synaptotagmin-like prot 30.2 22 0.00076 24.3 1.6 35 177-211 22-57 (76)
201 2pk7_A Uncharacterized protein 29.7 14 0.00049 24.7 0.5 8 221-228 29-36 (69)
202 2d8v_A Zinc finger FYVE domain 29.6 28 0.00094 23.2 1.9 32 178-214 6-38 (67)
203 1rut_X Flinc4, fusion protein 29.2 27 0.00091 27.4 2.2 37 182-228 71-107 (188)
204 1x3h_A Leupaxin; paxillin fami 28.8 22 0.00075 23.4 1.4 38 181-230 16-53 (80)
205 3arc_X Photosystem II PSBX pro 28.7 15 0.00051 21.8 0.4 23 55-77 16-38 (39)
206 2dlo_A Thyroid receptor-intera 28.6 22 0.00077 23.5 1.4 37 181-229 16-52 (81)
207 6rxn_A Rubredoxin; electron tr 27.6 17 0.00057 22.4 0.5 8 220-227 32-39 (46)
208 2l3k_A Rhombotin-2, linker, LI 26.8 33 0.0011 24.9 2.2 33 181-215 37-69 (123)
209 1tpx_A Prion protein, major pr 26.4 13 0.00045 27.7 -0.1 7 60-66 9-15 (121)
210 3heq_A Major prion protein; ce 25.4 14 0.00048 27.8 -0.1 10 59-68 29-38 (142)
211 3bz1_X Photosystem II PSBX pro 25.1 23 0.00077 22.2 0.8 23 55-77 26-48 (50)
212 2jny_A Uncharacterized BCR; st 25.1 13 0.00046 24.7 -0.3 19 212-230 4-22 (67)
213 2egq_A FHL1 protein; LIM domai 24.3 30 0.001 22.5 1.4 39 181-230 16-58 (77)
214 2cup_A Skeletal muscle LIM-pro 23.3 53 0.0018 22.5 2.7 45 181-230 34-78 (101)
215 3lqh_A Histone-lysine N-methyl 22.5 31 0.001 27.5 1.3 34 196-229 21-65 (183)
216 2vrw_B P95VAV, VAV1, proto-onc 22.0 45 0.0015 29.2 2.5 34 180-213 357-391 (406)
217 2das_A Zinc finger MYM-type pr 21.6 81 0.0028 20.5 2.9 36 179-214 19-55 (62)
218 1l8d_A DNA double-strand break 20.9 22 0.00076 25.4 0.2 10 180-189 47-56 (112)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=126.14 Aligned_cols=80 Identities=35% Similarity=0.768 Sum_probs=68.6
Q ss_pred ccCCCCCCHHHHhcCCcccccchhhhhcccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 150 VTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 150 ~~~~~g~s~~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
....++++++.++.||...+..... ...++..|+||+++|..++.++.+| |+|.||..||.+|+..+.+||+||.++.
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CcCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3567899999999999887765431 2345678999999999999899998 9999999999999999999999999987
Q ss_pred CC
Q 026652 230 KD 231 (235)
Q Consensus 230 ~~ 231 (235)
..
T Consensus 89 ~~ 90 (91)
T 2l0b_A 89 PP 90 (91)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-18 Score=120.47 Aligned_cols=71 Identities=34% Similarity=0.785 Sum_probs=59.1
Q ss_pred HHHhcCCcccccchhhhhcccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCCC
Q 026652 159 DMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 232 (235)
Q Consensus 159 ~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~~ 232 (235)
+.++++|...+...+ ...++..|+||++++..++.++.+| |+|.||..||.+|++.+.+||+||+++....
T Consensus 4 ~~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred hhHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 345677777665432 2345678999999999999889998 9999999999999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.63 E-value=1.5e-16 Score=105.30 Aligned_cols=52 Identities=50% Similarity=1.210 Sum_probs=47.5
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
+++..|+||++++..++.+..+|.|+|.||..||.+|++++.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999998888888789999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-16 Score=109.25 Aligned_cols=55 Identities=36% Similarity=0.792 Sum_probs=49.3
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 232 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~~ 232 (235)
...+..|+||++++..++.+..+| |+|.||..||.+|++.+.+||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 345678999999999999888898 9999999999999999999999999987543
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=7.6e-16 Score=106.56 Aligned_cols=55 Identities=47% Similarity=1.021 Sum_probs=48.9
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 232 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~~ 232 (235)
...+..|+||++.+..+..++.+| |+|.||..||.+|+..+.+||+||.++....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345678999999999888888898 9999999999999999999999999987653
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=6.2e-16 Score=109.55 Aligned_cols=55 Identities=38% Similarity=1.030 Sum_probs=49.4
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 232 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~~ 232 (235)
..++..|+||++.|..++.++.+| |+|.||..||.+|+..+.+||+||+++...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 345679999999999998888898 9999999999999999999999999987653
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=109.29 Aligned_cols=52 Identities=27% Similarity=0.691 Sum_probs=42.6
Q ss_pred cCcccccccccccC-----------CCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 179 NEIGCSICLEKFEE-----------GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~-----------~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
++..|+||+++|.+ ++.++.+|+|+|.||.+||++||.++++||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34567777777754 45566777799999999999999999999999999764
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.51 E-value=4.1e-15 Score=103.12 Aligned_cols=55 Identities=27% Similarity=0.710 Sum_probs=46.3
Q ss_pred cccCcccccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccccccCCC
Q 026652 177 LDNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 232 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~----~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~~ 232 (235)
..++..|+||++.+.++ .....+| |+|.||..||.+|+.++.+||+||+++..++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 34567899999999774 4445666 9999999999999999999999999988653
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.51 E-value=1e-14 Score=96.23 Aligned_cols=50 Identities=36% Similarity=0.839 Sum_probs=43.2
Q ss_pred cCcccccccccccCCC-ceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 179 NEIGCSICLEKFEEGD-SARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~-~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
++..|+||++++.+++ .+..+| |+|.||..||.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4678999999996643 456676 9999999999999999999999999875
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=1.3e-14 Score=109.86 Aligned_cols=53 Identities=30% Similarity=0.620 Sum_probs=42.6
Q ss_pred cCcccccccccccCCC---------------ceeecCCCCCcccHHHHHHHH-----hcCCCCccccccccCCC
Q 026652 179 NEIGCSICLEKFEEGD---------------SARKLPSCGHCFHSECVDKWL-----TRNGSCPVCRECVCKDT 232 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~---------------~~~~Lp~C~H~Fh~~CI~~WL-----~~~~sCPlCR~~v~~~~ 232 (235)
.+..|+||+++|..+. .++.+| |+|.||..||.+|+ ..+.+||+||..+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3568999999997754 233565 99999999999999 45678999999886543
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.3e-15 Score=102.55 Aligned_cols=54 Identities=35% Similarity=0.891 Sum_probs=47.1
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCCCCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTDTW 235 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~~~~~ 235 (235)
..++..|+||++.+.+ ..+| |+|.||..||.+|+.++.+||+||+++...+..|
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 3456789999999887 5566 9999999999999999999999999999877655
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.8e-15 Score=100.96 Aligned_cols=53 Identities=28% Similarity=0.735 Sum_probs=44.7
Q ss_pred cccCcccccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 177 LDNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~----~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..++..|+||++.+.++ ..+..+| |+|.||..||.+|+..+.+||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999875 2335666 99999999999999999999999999864
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=98.55 Aligned_cols=53 Identities=28% Similarity=0.731 Sum_probs=44.8
Q ss_pred cCcccccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccccccCCC
Q 026652 179 NEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 232 (235)
Q Consensus 179 ~~~~C~ICle~f~~~----~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~~ 232 (235)
++..|+||++.+.++ ..+..+| |+|.||..|+.+|+.++.+||+||+++..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 456899999999864 3445666 9999999999999999999999999987653
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.45 E-value=4.3e-14 Score=106.50 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=42.4
Q ss_pred cCcccccccccccCCC---------------ceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 179 NEIGCSICLEKFEEGD---------------SARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~---------------~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
++..|+||+++|..+. .++.+| |+|.||..||.+||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4678999999998652 245566 9999999999999999999999999854
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=6.5e-14 Score=96.37 Aligned_cols=49 Identities=35% Similarity=0.804 Sum_probs=42.3
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
.+..|+||++.+.++. ..+| |+|.||..|+.+|+.++.+||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~~~--~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYS--MALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCE--EETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCc--EecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4568999999987643 5566 99999999999999999999999998864
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.3e-14 Score=96.94 Aligned_cols=53 Identities=26% Similarity=0.550 Sum_probs=44.3
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 232 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~~ 232 (235)
..++..|+||++.+.++..+ +| |+|.||..||.+|+..+.+||+||+++..++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~--~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTI--TE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEEC--SS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCcCEE--CC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34567999999999874332 35 9999999999999999999999999987654
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=98.89 Aligned_cols=54 Identities=31% Similarity=0.755 Sum_probs=45.5
Q ss_pred cccCcccccccccccCCCc-eeecCCCCCcccHHHHHHHHhcC---CCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDS-ARKLPSCGHCFHSECVDKWLTRN---GSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~-~~~Lp~C~H~Fh~~CI~~WL~~~---~sCPlCR~~v~~~ 231 (235)
..++..|+||++.|.+.+. ...+| |+|.||..||.+|+..+ .+||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4556889999999988654 56676 99999999999999876 7899999988654
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=97.66 Aligned_cols=53 Identities=23% Similarity=0.626 Sum_probs=44.4
Q ss_pred ccCcccccccccccCCCceeecCCCC-----CcccHHHHHHHHhcC--CCCccccccccCCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCG-----HCFHSECVDKWLTRN--GSCPVCRECVCKDT 232 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~-----H~Fh~~CI~~WL~~~--~sCPlCR~~v~~~~ 232 (235)
.++..|.||++++..++.+ .+| |+ |.||.+||++||..+ .+||+||.++..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4567899999999877766 578 86 999999999999866 48999999987554
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1e-13 Score=96.49 Aligned_cols=49 Identities=29% Similarity=0.545 Sum_probs=42.5
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
.++..|+||++.+.++ ..+| |+|.||..||.+|+..+.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999998775 4456 99999999999999999999999999864
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.2e-13 Score=92.49 Aligned_cols=52 Identities=25% Similarity=0.649 Sum_probs=43.7
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCccccccccCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKDT 232 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~-~~~sCPlCR~~v~~~~ 232 (235)
..++..|+||++.+.++.. +| |||.||..||.+|+. .+.+||+||+++..++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 3456789999999988765 45 999999999999995 5678999999987653
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.36 E-value=2.7e-13 Score=95.17 Aligned_cols=53 Identities=25% Similarity=0.697 Sum_probs=43.7
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCccccccccCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVCKDT 232 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~--~sCPlCR~~v~~~~ 232 (235)
..++..|+||++.|.++.. +|.|+|.||..||.+|+..+ .+||+||+++...+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEE---CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCCeE---cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3456899999999998655 44599999999999999865 68999999876544
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.6e-13 Score=93.22 Aligned_cols=52 Identities=31% Similarity=0.722 Sum_probs=42.9
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCccccccccCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVCRECVCKDT 232 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~---~~~sCPlCR~~v~~~~ 232 (235)
..++..|+||++.+.++. .+| |+|.||..||.+|+. .+..||+||+++..++
T Consensus 17 ~~~~~~C~IC~~~~~~~~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPV---TID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSEE---ECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCeE---EcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345689999999998744 345 999999999999997 4568999999987654
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.33 E-value=3e-13 Score=106.11 Aligned_cols=50 Identities=40% Similarity=0.947 Sum_probs=43.0
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
.++..|+||++.|.++. .+| |||.||..||.+|+..+.+||+||+++...
T Consensus 51 ~~~~~C~iC~~~~~~~~---~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAV---TLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEE---EET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCce---ECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34568999999998754 456 999999999999999999999999998643
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.2e-13 Score=105.76 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=1.0
Q ss_pred cCcccccccccccCCCc--------------eeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 179 NEIGCSICLEKFEEGDS--------------ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~--------------~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
++..|+||+++|..+.. ...+++|+|.||..||++||..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 45789999999976321 2222349999999999999999999999999854
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=4.2e-13 Score=95.62 Aligned_cols=48 Identities=21% Similarity=0.511 Sum_probs=42.1
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..+..|+||++.+.++. .+| |+|.||..||.+|+..+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPV---VTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEE---ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCee---Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45678999999998754 456 9999999999999999999999999986
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1.2e-12 Score=89.29 Aligned_cols=53 Identities=30% Similarity=0.688 Sum_probs=42.3
Q ss_pred cCcccccccc-cccCCCcee-ecCCCCCcccHHHHHHHHhc-CCCCccccccccCCC
Q 026652 179 NEIGCSICLE-KFEEGDSAR-KLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKDT 232 (235)
Q Consensus 179 ~~~~C~ICle-~f~~~~~~~-~Lp~C~H~Fh~~CI~~WL~~-~~sCPlCR~~v~~~~ 232 (235)
++..|+||++ .+.++.... .+| |||.||..||.+|+.+ +.+||+||+++..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3568999999 787776533 355 9999999999999764 467999999987653
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=3.7e-13 Score=100.01 Aligned_cols=52 Identities=27% Similarity=0.675 Sum_probs=43.3
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~-~sCPlCR~~v~~~ 231 (235)
..++..|+||++.|.++.. .+| |||.||..||.+|+..+ .+||+||.++..+
T Consensus 19 l~~~~~C~IC~~~~~~p~~--~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARL--CPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEE--CTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCccCCccccCccc--cCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 4567899999999987443 145 99999999999999987 6999999998654
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=6.5e-13 Score=98.16 Aligned_cols=51 Identities=31% Similarity=0.727 Sum_probs=42.9
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..++..|+||++.+.++..+ +| |||.||..||.+|+..+.+||+||.++..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~--~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMII--PQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEEC--TT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEE--CC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 34567899999999874322 35 99999999999999999999999998875
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=7.3e-13 Score=101.97 Aligned_cols=53 Identities=28% Similarity=0.752 Sum_probs=45.2
Q ss_pred ccCcccccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
.++..|+||++.|.++ .....+| |||.||..||.+|++.+.+||+||+++...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567899999999875 3445666 999999999999999999999999998754
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=9.6e-13 Score=92.91 Aligned_cols=51 Identities=22% Similarity=0.549 Sum_probs=43.5
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~-~~sCPlCR~~v~~~ 231 (235)
..++..|+||++.|.++.. +| |||.||..||.+|+.. +.+||+||+++..+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~---~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVI---VS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEE---ET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccCCEE---cC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3457899999999988654 45 9999999999999987 78899999998754
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=1.6e-12 Score=92.54 Aligned_cols=51 Identities=33% Similarity=0.718 Sum_probs=43.3
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhc------CCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR------NGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~------~~sCPlCR~~v~~~ 231 (235)
..++..|+||++.+.++. .+| |+|.||..||.+|+.. ...||+||.++..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 345679999999998865 456 9999999999999987 67899999998754
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=6.7e-13 Score=93.71 Aligned_cols=51 Identities=35% Similarity=0.729 Sum_probs=43.0
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhc-------CCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-------NGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~-------~~sCPlCR~~v~~~ 231 (235)
..++..|+||++.+.++.. +| |||.||..||.+|+.. +..||+||.++..+
T Consensus 9 ~~~~~~C~IC~~~~~~p~~---l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLS---LD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSCCC---CS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCeeE---CC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 3457899999999988654 45 9999999999999986 56899999998653
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=91.77 Aligned_cols=51 Identities=37% Similarity=0.808 Sum_probs=43.3
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhc------CCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR------NGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~------~~sCPlCR~~v~~~ 231 (235)
..++..|+||++.+.++.. +| |+|.||..|+.+|+.. +..||+||.++..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLS---LD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBC---CS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCCcee---CC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3456799999999988644 45 9999999999999987 78899999998754
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.25 E-value=4.1e-12 Score=95.33 Aligned_cols=52 Identities=27% Similarity=0.674 Sum_probs=43.8
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
..++..|+||++.+.++.. .+| |||.||..||.+|+..+.+||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~--~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATT--IIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEE--ETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCE--eCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4567899999999987432 235 999999999999999999999999998754
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.23 E-value=6.7e-12 Score=89.29 Aligned_cols=57 Identities=28% Similarity=0.591 Sum_probs=43.5
Q ss_pred cccCcccccccccccCCC-ceeecCCCCCcccHHHHHHHHh-cCCCCccccccccCCCCC
Q 026652 177 LDNEIGCSICLEKFEEGD-SARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKDTDT 234 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~-~~~~Lp~C~H~Fh~~CI~~WL~-~~~sCPlCR~~v~~~~~~ 234 (235)
..++..|+||++.+...+ ....+| |||.||..|+.+++. ....||.||+++...+..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 356789999999886432 232344 999999999999875 457899999999876543
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.23 E-value=3.6e-12 Score=92.73 Aligned_cols=50 Identities=26% Similarity=0.719 Sum_probs=41.8
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCcccccccc
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVC 229 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~--~sCPlCR~~v~ 229 (235)
..++..|+||++.|.++..+ |.|||.||..||.+|+..+ ..||+||.++.
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~---~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVI---PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSCEEC---TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCceEC---CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45678999999999986544 4499999999999999754 58999999974
No 37
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=8.5e-12 Score=87.84 Aligned_cols=52 Identities=31% Similarity=0.659 Sum_probs=43.1
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCccccccccCCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVCKDT 232 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~--~sCPlCR~~v~~~~ 232 (235)
+....|+||++.+..++. .+.|+|.||..||.+||+.+ .+||+||++...+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 345789999999987543 33699999999999999977 88999999887543
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6e-12 Score=85.22 Aligned_cols=44 Identities=32% Similarity=0.788 Sum_probs=37.1
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCccc
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVC 224 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~---~~~sCPlC 224 (235)
..++..|+||++.+.++.. +| |+|.||..||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVT---ID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEE---CT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEE---eC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999999988544 45 999999999999998 45689998
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.22 E-value=4.1e-12 Score=97.66 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=42.2
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCccccccccC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCK 230 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~-sCPlCR~~v~~ 230 (235)
..++..|+||++.|.++.. +| |||.||..||.+|+..+. +||+||.++..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPIT---TV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEE---ee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3456789999999997544 46 999999999999998554 89999999976
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=5.3e-12 Score=97.08 Aligned_cols=53 Identities=28% Similarity=0.752 Sum_probs=44.6
Q ss_pred ccCcccccccccccCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
.+...|+||++.+..+ .....++ |+|.||..||++|+..+++||+||.++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999999864 2334555 999999999999999999999999998765
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.7e-12 Score=82.72 Aligned_cols=44 Identities=43% Similarity=1.040 Sum_probs=36.6
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCccc
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVC 224 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~---~~~sCPlC 224 (235)
..++..|+||++.+.++.. +| |+|.||..||.+|+. ++.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVI---IE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCC---CS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEe---CC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999988644 45 999999999999954 56789998
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=9e-12 Score=93.59 Aligned_cols=50 Identities=34% Similarity=0.731 Sum_probs=42.1
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC---CCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG---SCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~---sCPlCR~~v~~~ 231 (235)
.+...|+||++.+.++.. +| |||.||..||.+|+..+. +||+||.++...
T Consensus 19 ~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 19 QKILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHHTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred cCCCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 345789999999988655 45 999999999999998654 899999998754
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.19 E-value=1.2e-11 Score=99.67 Aligned_cols=50 Identities=30% Similarity=0.693 Sum_probs=41.4
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCccccccccC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCK 230 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~-~~sCPlCR~~v~~ 230 (235)
.++..|+||++.|.++. ..+| |||.||..||.+|+.. +..||+||.++..
T Consensus 52 ~~~~~C~IC~~~~~~p~--~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTM--TTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEE--EETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcC--EeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34578999999998742 2235 9999999999999997 7889999999854
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.18 E-value=5.8e-12 Score=95.62 Aligned_cols=51 Identities=25% Similarity=0.555 Sum_probs=43.0
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~-~~sCPlCR~~v~~~ 231 (235)
..++..|+||++.+.++.. +| |||.||..||.+|+.. +.+||+||.++...
T Consensus 20 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVE---TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred ccCCCCCCCCCcHhcCcEE---cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 3456789999999987554 45 9999999999999987 67899999998754
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.12 E-value=1.7e-11 Score=97.58 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=43.2
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~-sCPlCR~~v~~~ 231 (235)
..++..|+||++.|.++.. +| |+|.||..||.+|+.... +||+||.++...
T Consensus 75 l~~~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVT---TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEE---cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3456789999999988655 56 999999999999998764 899999998865
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.11 E-value=1.4e-11 Score=93.91 Aligned_cols=51 Identities=35% Similarity=0.788 Sum_probs=42.9
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~-sCPlCR~~v~~~ 231 (235)
..++..|+||++.+.++. .+| |||.||..||.+|+..+. +||+||.++..+
T Consensus 15 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREAV---QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCeE---ECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 345679999999998863 356 999999999999998765 899999998754
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.11 E-value=2.1e-11 Score=90.67 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=44.8
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
..++..||||++.|.+|+.+ | |||.|+..||.+|+..+.+||+||.++..+
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~---~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRL---P-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEE---T-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccCCeEC---C-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 34578999999999997765 4 999999999999999899999999998754
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.11 E-value=1.5e-11 Score=84.09 Aligned_cols=52 Identities=29% Similarity=0.469 Sum_probs=41.6
Q ss_pred ccCcccccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
.++..|+||++...+.. +..+| |||. ||.+|+.+|...+..||+||+++...
T Consensus 6 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp GGGSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCcCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 34568999999876632 11348 9999 89999999999899999999998643
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.10 E-value=2.6e-11 Score=87.51 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=44.6
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
..++..||||++.|.++..+ | |||.|+..||.+|+..+.+||+||.++..+
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~---~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRL---P-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEEC---T-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCCeEC---C-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 34578999999999997665 4 999999999999999999999999988654
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.08 E-value=1.2e-11 Score=93.75 Aligned_cols=49 Identities=31% Similarity=0.695 Sum_probs=41.3
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhc-CCCCccccccccC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCK 230 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~-~~sCPlCR~~v~~ 230 (235)
.++..|+||++.+.++..+ | |||.||..||.+|+.. +.+||+||+++..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~---~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTL---P-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEEC---T-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEc---C-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3467899999999876544 5 9999999999999976 6789999998863
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.08 E-value=4.2e-11 Score=88.75 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=44.3
Q ss_pred ccCcccccccccccCCCceeecCCCC-CcccHHHHHHHHhcCCCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCG-HCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~-H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
.++..||||++.|.+|+.+ | || |.|+..||.+|+..+.+||+||+++..+
T Consensus 20 p~~~~CpI~~~~m~dPV~~---~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL---P-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC---T-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCCeEC---C-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4578999999999997765 4 99 9999999999999989999999998754
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=1.9e-11 Score=85.78 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=40.2
Q ss_pred cccCcccccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccccccCCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTD 233 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~-Fh~~CI~~WL~~~~sCPlCR~~v~~~~~ 233 (235)
..++..|+||++.+.++ ..+| |||. ||..|+.+| ..||+||+++.....
T Consensus 21 ~~~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFKQK 70 (74)
T ss_dssp HHHHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEEEE
T ss_pred CccCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccCcEE
Confidence 34567899999988773 4456 9999 999999998 889999999876543
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=5.1e-11 Score=79.10 Aligned_cols=49 Identities=24% Similarity=0.498 Sum_probs=40.3
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCCCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTD 233 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~~~ 233 (235)
.++..|+||++.+.++. .+| |+|.||..|+.+| ...||+||+++....+
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCeE---EcC-CCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 45678999999999864 456 9999999999884 6789999999876543
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.03 E-value=4.5e-11 Score=81.39 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=41.0
Q ss_pred cCcccccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccccccCC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~-Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
.+..|+||++...+.. +..+| |||. ||..|+.+|.+++..||+||+++...
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 4568999999866532 22347 9998 99999999998888999999998643
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.03 E-value=6.5e-11 Score=93.32 Aligned_cols=49 Identities=24% Similarity=0.505 Sum_probs=41.5
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC-CCcccccccc
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVC 229 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~-sCPlCR~~v~ 229 (235)
..++..|+||++.+.++.. ++ |||.||..||.+|+.... +||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~pv~---~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQ---AQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCcEE---CC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4567899999999998744 45 999999999999998665 8999999764
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.3e-10 Score=88.46 Aligned_cols=50 Identities=30% Similarity=0.590 Sum_probs=41.3
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
..++..|+||++.|.++..+ .| |||.||..||.+|+. ..||+||.++...
T Consensus 19 l~~~~~C~IC~~~~~~pv~~--~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCL--GG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCC--CS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred chhCCCCCCCChHhhCccEe--CC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 45678999999999875433 15 999999999999987 8899999998543
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.97 E-value=1.2e-10 Score=103.43 Aligned_cols=54 Identities=24% Similarity=0.676 Sum_probs=42.2
Q ss_pred ccCcccccccccccCC----CceeecCCCCCcccHHHHHHHHhcC-----------CCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRN-----------GSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~Fh~~CI~~WL~~~-----------~sCPlCR~~v~~~ 231 (235)
+...+|+||++.+.+. +.....|+|+|.||..|+.+||+.. ++||+||+++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4567899999999872 2333345799999999999999743 4699999998754
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=3.5e-10 Score=102.53 Aligned_cols=48 Identities=29% Similarity=0.701 Sum_probs=41.2
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCccccccccCC
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKD 231 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~-~~~sCPlCR~~v~~~ 231 (235)
...|+||++.+.++ ..+| |||.||..|+.+|+. .+.+||+||.++...
T Consensus 332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 36899999998763 4566 999999999999999 788999999998754
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4e-10 Score=79.07 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=40.0
Q ss_pred ccCcccccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccccccCCCCCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTDTW 235 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-Fh~~CI~~WL~~~~sCPlCR~~v~~~~~~~ 235 (235)
.++..|+||++.+.++. .+| |+|. ||..|+.+ ...||+||+++......|
T Consensus 23 ~~~~~C~IC~~~~~~~~---~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIV---FVP-CGHLVTCKQCAEA----VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHSCSSSCSSCCCBC---CSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCcCCCCCCCEE---Eec-CCCHHHHHHHhhC----CCCCccCCceecCcEEEe
Confidence 45678999999987743 456 9999 99999964 478999999998765544
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.86 E-value=5.6e-10 Score=90.05 Aligned_cols=51 Identities=33% Similarity=0.727 Sum_probs=42.8
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~-~sCPlCR~~v~~~ 231 (235)
..++..|+||++.+.++.. +| |||.||..||.+|+... .+||+||.++..+
T Consensus 15 ~~~~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQ---TP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCcEE---CC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4456899999999998643 55 99999999999999865 4899999998754
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=6.8e-10 Score=81.38 Aligned_cols=47 Identities=19% Similarity=0.574 Sum_probs=39.4
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC------CCCcc--cccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN------GSCPV--CREC 227 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~------~sCPl--CR~~ 227 (235)
..+..||||++.|.+|+.+ |.|||.|+..||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~---~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKN---KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEE---SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEc---CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999997665 3499999999999999864 48999 9865
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=9e-10 Score=94.61 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=42.3
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~-~sCPlCR~~v~~~ 231 (235)
.....||||++.|.+|+.+ | |||+||..||.+|+..+ .+||+||.++...
T Consensus 206 ~~~~~c~i~~~~~~dPv~~---~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCIT---P-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSSEEEC---S-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcCCeEC---C-CCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 3567899999999997665 4 99999999999999864 4599999998643
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=74.79 Aligned_cols=48 Identities=29% Similarity=0.643 Sum_probs=38.5
Q ss_pred ccCcccccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccccccCCCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTD 233 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-Fh~~CI~~WL~~~~sCPlCR~~v~~~~~ 233 (235)
.++..|.||++...+ +..+| |+|. ||..|+.. ...||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 346789999987655 55677 9999 99999984 5789999999876543
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.81 E-value=6.2e-10 Score=79.15 Aligned_cols=46 Identities=33% Similarity=0.692 Sum_probs=37.5
Q ss_pred ccCcccccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
.++..|+||++.+.+ ...+| |||. ||..|+.+| ..||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 445689999998766 45567 9999 999999877 4899999988654
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=1.8e-09 Score=78.91 Aligned_cols=51 Identities=22% Similarity=0.582 Sum_probs=41.5
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhc--------CCCCcc--cccc--ccC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR--------NGSCPV--CREC--VCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~--------~~sCPl--CR~~--v~~ 230 (235)
+...|+||++++..++.+...| |+|.||.+|+..++.. ...||. ||.. +.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 4568999999998877766566 9999999999999863 236999 9988 543
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.74 E-value=6e-09 Score=70.22 Aligned_cols=50 Identities=26% Similarity=0.594 Sum_probs=37.8
Q ss_pred ccCcccccccccccCCCceeecC-CCCC---cccHHHHHHHHhc--CCCCccccccccC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLP-SCGH---CFHSECVDKWLTR--NGSCPVCRECVCK 230 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp-~C~H---~Fh~~CI~~WL~~--~~sCPlCR~~v~~ 230 (235)
++...|.||+++..+ .+ .+| +|.| .||..|+.+|+.. +.+||+||.++..
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456789999998432 23 467 3445 9999999999974 5789999998753
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.71 E-value=4.8e-09 Score=85.74 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=42.5
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC-CCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~-~sCPlCR~~v~~~ 231 (235)
.++..||||++.|.+|+.+ | |||.|+..||.+|+..+ .+||+||.++...
T Consensus 104 p~~f~CPI~~elm~DPV~~---~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT---P-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC---T-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCCeEC---C-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4568999999999997665 5 99999999999999864 4699999988653
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.60 E-value=6.4e-09 Score=93.23 Aligned_cols=49 Identities=31% Similarity=0.751 Sum_probs=40.3
Q ss_pred cccCcccccccccccCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccccccCCCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTD 233 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~-Fh~~CI~~WL~~~~sCPlCR~~v~~~~~ 233 (235)
..++..|+||++.+.+ ...+| |||. ||..|+.+| ..||+||.++.....
T Consensus 292 l~~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGTVR 341 (345)
T ss_dssp HHTTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEEEE
T ss_pred CcCCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCeEE
Confidence 4567899999999877 34456 9999 999999988 789999999876543
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.57 E-value=1.6e-08 Score=68.27 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=41.3
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
..|+||++.+.++. .+|.|||+|.+.||.+|+.++.+||++++++..+
T Consensus 4 ~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 57999999999863 3424999999999999999888999999998654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.9e-08 Score=86.46 Aligned_cols=49 Identities=24% Similarity=0.584 Sum_probs=40.9
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC--CCCcc--ccccccC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPV--CRECVCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~--~sCPl--CR~~v~~ 230 (235)
.+..||||++.|.+|+.. . .|||.||..||.+|+..+ .+||+ ||+.+..
T Consensus 180 ~el~CPIcl~~f~DPVts--~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLIS--R-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEE--S-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeee--C-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 457899999999997753 2 599999999999999864 46999 9998754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.31 E-value=3.3e-07 Score=67.31 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=36.6
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHh-cCCCCccccccccC
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCK 230 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~-~~~sCPlCR~~v~~ 230 (235)
-|++|--.+. .-.|..| |+|.||++|+..|.+ +.++||.||.++..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4778855543 3567788 999999999999985 46889999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.05 E-value=3.5e-06 Score=71.71 Aligned_cols=49 Identities=29% Similarity=0.677 Sum_probs=40.6
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC--CCccccccccCC
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG--SCPVCRECVCKD 231 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~--sCPlCR~~v~~~ 231 (235)
...|.||.+-...+ ..+|+|+|.||..|+.+|++.+. .||.|+.+.+.+
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 57899999988864 44567999999999999998654 899999987644
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.06 E-value=0.0022 Score=46.27 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=39.9
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
..+...|..|+..... .+ . ...|++|..|+...|.....||+|..+++.+
T Consensus 25 ~~G~~nCKsCWf~~k~--LV-~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG--LV-E--CNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCSS--EE-E--CSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccCC--ee-e--ecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3456789999877553 33 1 2459999999999999999999999998765
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.32 E-value=0.0082 Score=43.42 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=25.8
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHH-HH
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK-WL 215 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~-WL 215 (235)
++..|+||.+++..+....-++ |+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 4578999998743333332354 999999999998 53
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.30 E-value=0.014 Score=39.46 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=34.7
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC----CCcccccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVC 229 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~----sCPlCR~~v~ 229 (235)
.....|.||.+. + .+.....|...||..|++..|.... .||.|+....
T Consensus 10 ~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 345679999643 3 3445557999999999998876543 4999986543
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.29 E-value=0.039 Score=38.99 Aligned_cols=36 Identities=22% Similarity=0.538 Sum_probs=25.0
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHH
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 214 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~W 214 (235)
...+..|.|| +.+...+...-- -|+.+||..|+.+-
T Consensus 12 ~~~D~~C~VC-~~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVC-EVWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTT-CCCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCcc-ccccccceeccc-cccccccHhhcccc
Confidence 3467899999 445544433211 48999999999985
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.88 E-value=0.019 Score=38.22 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=36.7
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHh-----cCCCCcccccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECVC 229 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~-----~~~sCPlCR~~v~ 229 (235)
++...|+||...+.++......-.|..-||..|+.--.. .+-.||.|+..-.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 456789999988765555555557999999999863221 3456999986543
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.55 E-value=0.041 Score=36.40 Aligned_cols=47 Identities=23% Similarity=0.565 Sum_probs=32.9
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCcccccc
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVCREC 227 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~----~sCPlCR~~ 227 (235)
...+..|.||.+. ..+.....|...||..|+..-+... =.||.|+..
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999763 3444555788999999998755432 249999753
No 79
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.38 E-value=0.018 Score=37.94 Aligned_cols=51 Identities=27% Similarity=0.625 Sum_probs=35.8
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC----CCccccccccCCCC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVCKDTD 233 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~----sCPlCR~~v~~~~~ 233 (235)
++..|.||.+. + .+.....|...||..|+.+=+.... .||.|+.....+++
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~~ 58 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEE 58 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTTT
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchhc
Confidence 46789999763 3 3445557999999999986554322 39999877665544
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.90 E-value=0.036 Score=36.66 Aligned_cols=48 Identities=21% Similarity=0.438 Sum_probs=32.8
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCcccccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVCRECVC 229 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~----~sCPlCR~~v~ 229 (235)
.++..|.||.+. + .+.....|...||..|+.+-|... =.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 356789999752 2 344455688999999998654432 24999987543
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.74 E-value=0.06 Score=36.89 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=36.2
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccccccCC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR----NGSCPVCRECVCKD 231 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~----~~sCPlCR~~v~~~ 231 (235)
+...|+||..... ++.......|...||..|+..-+.. .-.||.|+..+...
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 4467999977643 4445555579999999999754432 23599998877643
No 82
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.84 E-value=0.088 Score=37.58 Aligned_cols=49 Identities=27% Similarity=0.533 Sum_probs=34.0
Q ss_pred cccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC----CCcccccccc
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVC 229 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~----sCPlCR~~v~ 229 (235)
..++..|.+|.+. + .+.....|.-.||..|+++=|..-+ .||.|+..-.
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 3456789999764 3 3445557888999999977554322 4999986543
No 83
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.14 E-value=0.15 Score=50.87 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=42.7
Q ss_pred ccCcccccccccccCCCceeecCCCC-CcccHHHHHHHHhcCCCCccccccccCC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCG-HCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~-H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
.++..|||-++-+.+|+.+ | -| |.|-+.+|.+||..+.+||.=|+++...
T Consensus 889 P~~F~cPIs~~lM~DPVil---p-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVIL---P-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSEEEC---T-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCCeEc---C-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3457899999999997765 4 76 6999999999999999999999988754
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.83 E-value=0.041 Score=35.69 Aligned_cols=45 Identities=29% Similarity=0.679 Sum_probs=31.4
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC----CCccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRE 226 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~----sCPlCR~ 226 (235)
.++..|.||.+. + .+.....|...||..|+.+=|.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999764 3 3444557999999999986554322 3998864
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=89.55 E-value=0.31 Score=30.95 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=31.1
Q ss_pred ccccccccccCCCceeecC-CCCCcccHHHHHHH----HhcCCCCcccc
Q 026652 182 GCSICLEKFEEGDSARKLP-SCGHCFHSECVDKW----LTRNGSCPVCR 225 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp-~C~H~Fh~~CI~~W----L~~~~sCPlCR 225 (235)
.|.+|.....++....... .|..-||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889988886666555555 58889999997421 12556799986
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=89.54 E-value=0.07 Score=35.77 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=33.3
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCcccccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVCRECVC 229 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~----~sCPlCR~~v~ 229 (235)
.++..|.||.+. + .+.....|...||..|+.+-|... =.||.|+..-.
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 456789999763 3 344555788999999998654432 23999976443
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.52 E-value=0.18 Score=31.71 Aligned_cols=44 Identities=30% Similarity=0.626 Sum_probs=29.8
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCccccc
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVCRE 226 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~----~sCPlCR~ 226 (235)
.|.||.+.-.. ..+.....|...||..|+++=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899765333 3444555799999999997644432 23999975
No 88
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=88.72 E-value=0.067 Score=35.65 Aligned_cols=52 Identities=21% Similarity=0.477 Sum_probs=35.9
Q ss_pred ccCcccccccccc-cCCCceeecCCCCCcccHHHHHHHHh-------cCCCCcccccccc
Q 026652 178 DNEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLT-------RNGSCPVCRECVC 229 (235)
Q Consensus 178 ~~~~~C~ICle~f-~~~~~~~~Lp~C~H~Fh~~CI~~WL~-------~~~sCPlCR~~v~ 229 (235)
.++..|.||.... ..+..+.....|...||..|+..=+. ..=.||.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 4567899998764 23455566668999999999986432 1234999976543
No 89
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=88.57 E-value=0.32 Score=32.03 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=31.3
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVC 224 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlC 224 (235)
..|--|...|.+.. ....|+|++.||.+|=.---+.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986432 35688999999999954322233679988
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.37 E-value=0.34 Score=32.37 Aligned_cols=35 Identities=29% Similarity=0.599 Sum_probs=27.2
Q ss_pred ccCcccccccccccCCCceeecC-CCCCcccHHHHH
Q 026652 178 DNEIGCSICLEKFEEGDSARKLP-SCGHCFHSECVD 212 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp-~C~H~Fh~~CI~ 212 (235)
.....|++|...+.+++..+... .|...||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 44578999999988777777676 799999999983
No 91
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.86 E-value=0.59 Score=32.65 Aligned_cols=40 Identities=23% Similarity=0.497 Sum_probs=31.0
Q ss_pred ccCcccccccccccCCCceeecC-CCCCcccHHHHHHHHhcC
Q 026652 178 DNEIGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKWLTRN 218 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp-~C~H~Fh~~CI~~WL~~~ 218 (235)
.....|.+|.+.+++...+. .| .=.|.||..|-...++++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHhc
Confidence 34678999999999977763 22 235999999999988754
No 92
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.64 E-value=0.36 Score=34.56 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=29.7
Q ss_pred cCcccccccccccCCCceeecCC--CC-CcccHHHHHHHHhc----CCCCccccccccC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTR----NGSCPVCRECVCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~Fh~~CI~~WL~~----~~sCPlCR~~v~~ 230 (235)
+...| ||.+... ++ .....+ |. ..||..|+. |.. +-.||.|+..-.+
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 44567 9987643 33 333334 55 689999997 332 2349999876544
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.54 E-value=0.17 Score=37.40 Aligned_cols=45 Identities=38% Similarity=0.670 Sum_probs=31.1
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCccccc
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVCRE 226 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~----~sCPlCR~ 226 (235)
.|.||.+.-.+++.+.....|...||..|+++-|... =.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5888876533434555555799999999997655432 24999985
No 94
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=87.48 E-value=0.17 Score=34.56 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=34.4
Q ss_pred cccCcccccccccc-cCCCceeecCCCCCcccHHHHHHHHhc--CCCCcccccc
Q 026652 177 LDNEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLTR--NGSCPVCREC 227 (235)
Q Consensus 177 ~~~~~~C~ICle~f-~~~~~~~~Lp~C~H~Fh~~CI~~WL~~--~~sCPlCR~~ 227 (235)
..++..|.||.+.- .++..+.....|.-.||..|+..-..- .=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34567899998653 344556666679999999999753221 1239999754
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.92 E-value=0.18 Score=35.79 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=35.6
Q ss_pred ccCcccccccccc-cCCCceeecCCCCCcccHHHHHHHHhc--CCCCccccccccC
Q 026652 178 DNEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLTR--NGSCPVCRECVCK 230 (235)
Q Consensus 178 ~~~~~C~ICle~f-~~~~~~~~Lp~C~H~Fh~~CI~~WL~~--~~sCPlCR~~v~~ 230 (235)
.++..|.||.+.- ..+..+.....|.-.||..|+..-+.- .=.||.|+.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 4567899998653 233456666679999999999753321 1239999865443
No 96
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.18 E-value=0.53 Score=32.47 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=32.5
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHH-----hcCCCCccccccc
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL-----TRNGSCPVCRECV 228 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL-----~~~~sCPlCR~~v 228 (235)
...| ||...............|...||..|+.--- ..+-.||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4456 9988775445555555799999999985211 1345699998754
No 97
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=84.50 E-value=0.63 Score=31.58 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=29.8
Q ss_pred cCcccccccccccCCCceeecCC--CC-CcccHHHHHHHHhcC----CCCccccccccC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTRN----GSCPVCRECVCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~Fh~~CI~~WL~~~----~sCPlCR~~v~~ 230 (235)
+...| ||.+... +. ....-. |. ..||..|+. |... -.||.|+..-..
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 68 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccccc
Confidence 44567 8977543 33 333334 66 689999997 4332 249999876543
No 98
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.81 E-value=0.45 Score=32.49 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=32.9
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHH------H---hcCCCCccccccccCC
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW------L---TRNGSCPVCRECVCKD 231 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~W------L---~~~~sCPlCR~~v~~~ 231 (235)
...| ||......+ .......|...||..|+.-- + ..+-.||.|+..-.+.
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
Confidence 3556 898876543 34445569999999998421 1 2456799998765443
No 99
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.31 E-value=0.22 Score=33.84 Aligned_cols=51 Identities=24% Similarity=0.445 Sum_probs=34.2
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHH----HhcCCCCccccccccC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW----LTRNGSCPVCRECVCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~W----L~~~~sCPlCR~~v~~ 230 (235)
....| ||......++.......|..-||..|+.-- +..+-.||.|+..-.+
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 34678 798876555545555579899999998632 1233459999875443
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=82.14 E-value=0.36 Score=38.17 Aligned_cols=49 Identities=24% Similarity=0.547 Sum_probs=33.4
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHH-----hcCCCCcccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL-----TRNGSCPVCREC 227 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL-----~~~~sCPlCR~~ 227 (235)
.+...| +|......+........|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345678 9988765555555566799999999995211 134469999863
No 101
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.92 E-value=1.1 Score=37.19 Aligned_cols=53 Identities=23% Similarity=0.506 Sum_probs=35.1
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHh--------cCCCCccccccccCC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--------RNGSCPVCRECVCKD 231 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~--------~~~sCPlCR~~v~~~ 231 (235)
++..|.+|...|..-..--....||++||..|-..... ..+.|-.|-..+...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~ 223 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRK 223 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC-
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhh
Confidence 34689999999986443334457999999999875432 123477776655543
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.52 E-value=0.2 Score=35.50 Aligned_cols=53 Identities=17% Similarity=0.470 Sum_probs=36.3
Q ss_pred ccCcccccccccccC-CCceeecCCCCCcccHHHHHHHHhc--------CCCCccccccccC
Q 026652 178 DNEIGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTR--------NGSCPVCRECVCK 230 (235)
Q Consensus 178 ~~~~~C~ICle~f~~-~~~~~~Lp~C~H~Fh~~CI~~WL~~--------~~sCPlCR~~v~~ 230 (235)
+.+..|.||...-.. +..+.....|...||..|+.+=|.. .=.||.|+.....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 346789999875332 2455566679999999999865431 2249999876543
No 103
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=80.06 E-value=0.53 Score=34.45 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=26.7
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHh
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT 216 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~ 216 (235)
.++..|.||.+.=+. +.+.....|...||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccc
Confidence 456789999765332 22344457999999999987654
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=79.33 E-value=0.42 Score=32.17 Aligned_cols=47 Identities=21% Similarity=0.556 Sum_probs=31.2
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHH---hcCCCCccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL---TRNGSCPVCRE 226 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL---~~~~sCPlCR~ 226 (235)
.+...| ||..... ++.......|...||..|+.--- ...-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 9987665 44444555699999999986321 12345999975
No 105
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=78.76 E-value=0.58 Score=30.56 Aligned_cols=43 Identities=33% Similarity=0.665 Sum_probs=27.6
Q ss_pred cCcccccccccccCCCceeecCC--CC-CcccHHHHHHHHhcC----CCCccccc
Q 026652 179 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTRN----GSCPVCRE 226 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~Fh~~CI~~WL~~~----~sCPlCR~ 226 (235)
+...| ||.+.. .++ .....+ |. ..||..|+. |... -.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44567 997754 333 444445 66 699999997 3332 24999975
No 106
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.53 E-value=1.2 Score=39.77 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=31.0
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHh---cC--CCCccccccccC
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RN--GSCPVCRECVCK 230 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~---~~--~sCPlCR~~v~~ 230 (235)
...||+-...+..|..- . .|.|.-|.+- ..||. +. -.||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~PvRg--~-~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKS--I-NCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSEEEE--T-TCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccccccCcC--C-cCCCcceECH-HHHHHHhhcCCceeCCCCCcccCH
Confidence 46899998888776544 3 5999844432 23433 22 349999988754
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=78.40 E-value=2.3 Score=32.86 Aligned_cols=45 Identities=22% Similarity=0.491 Sum_probs=31.5
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHh-----------cCCCCccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----------RNGSCPVCRE 226 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~-----------~~~sCPlCR~ 226 (235)
..+..|.+|-+. ++ +.....|...||..||.+=+. ..=.||.|+.
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346789999653 33 444456899999999997653 1224999984
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=77.99 E-value=3.3 Score=30.29 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=24.7
Q ss_pred cCcccccccccc-----cCCCceeecCCCCCcccHHHHH
Q 026652 179 NEIGCSICLEKF-----EEGDSARKLPSCGHCFHSECVD 212 (235)
Q Consensus 179 ~~~~C~ICle~f-----~~~~~~~~Lp~C~H~Fh~~CI~ 212 (235)
....|.+|+..= ..++.+.....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 346799998753 2334555666799999999995
No 109
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.82 E-value=0.24 Score=35.40 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=33.5
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC----CCcccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCREC 227 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~----sCPlCR~~ 227 (235)
.++..|.||.+.-. +..+.....|...||..|+.+=|...+ .||.|+..
T Consensus 14 ~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34568999987643 234555557999999999975443222 39999764
No 110
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=77.75 E-value=1.3 Score=39.41 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=30.7
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHh---cC--CCCccccccccC
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RN--GSCPVCRECVCK 230 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~---~~--~sCPlCR~~v~~ 230 (235)
...|||=...+..|..- . .|.|.=|.+ +..||. +. -.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg--~-~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRA--V-TCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEEEE--T-TCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCCcC--C-CCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCH
Confidence 46799998888776544 3 599984333 223333 33 349999988754
No 111
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=77.75 E-value=1.3 Score=32.49 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=31.0
Q ss_pred cccCcccccccccccCCCceeecC--CCCCcccHHHHHHHHhcCC----CCccccccccCC
Q 026652 177 LDNEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWLTRNG----SCPVCRECVCKD 231 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~~~~~~~Lp--~C~H~Fh~~CI~~WL~~~~----sCPlCR~~v~~~ 231 (235)
..++..|.+|.+ .++ +.... .|...||..|+. |.... .||.|+-.+..+
T Consensus 12 ~~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 345678999973 233 33333 488999999997 54322 388776555443
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=77.60 E-value=1.1 Score=32.76 Aligned_cols=49 Identities=27% Similarity=0.516 Sum_probs=33.9
Q ss_pred CcccccccccccCCCceeecC-CCCCcccHHHHHHH------Hh----cCCCCccccccc
Q 026652 180 EIGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKW------LT----RNGSCPVCRECV 228 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp-~C~H~Fh~~CI~~W------L~----~~~sCPlCR~~v 228 (235)
...|+||...+.+.......- .|...||..|+.-= +. .+-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999986655555554 68999999998411 10 234599998654
No 113
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.39 E-value=5.6 Score=28.19 Aligned_cols=51 Identities=22% Similarity=0.400 Sum_probs=36.1
Q ss_pred cCcccccccccccC---CCceeecCCCCCcccHHHHHHHH-hcCCCCcccccccc
Q 026652 179 NEIGCSICLEKFEE---GDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 229 (235)
Q Consensus 179 ~~~~C~ICle~f~~---~~~~~~Lp~C~H~Fh~~CI~~WL-~~~~sCPlCR~~v~ 229 (235)
....|.||=+++.. ++.......|+--.|..|.+-=. ..+..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44689999988643 33333344577788999997433 35678999998875
No 114
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=77.32 E-value=0.63 Score=34.43 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=24.2
Q ss_pred ccccccccccc------CCCceeecCCCCCcccHHHHHHH
Q 026652 181 IGCSICLEKFE------EGDSARKLPSCGHCFHSECVDKW 214 (235)
Q Consensus 181 ~~C~ICle~f~------~~~~~~~Lp~C~H~Fh~~CI~~W 214 (235)
..|.||+..-. .++.+.....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987642 23455555579999999999754
No 115
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.83 E-value=1 Score=30.99 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=32.8
Q ss_pred cCcccccccccccCCCceeecC--CCCCcccHHHHHHHH---------hcCCCCccccccccCC
Q 026652 179 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWL---------TRNGSCPVCRECVCKD 231 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp--~C~H~Fh~~CI~~WL---------~~~~sCPlCR~~v~~~ 231 (235)
....| ||-.....+. ....- .|...||..|+.--- ..+-.||.|+..-.+.
T Consensus 15 ~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 45677 8988744443 33444 688999999995211 1244599998765544
No 116
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=76.66 E-value=0.68 Score=30.27 Aligned_cols=43 Identities=30% Similarity=0.658 Sum_probs=26.9
Q ss_pred cCcccccccccccCCCceeecCC--CC-CcccHHHHHHHHhcC----CCCccccc
Q 026652 179 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTRN----GSCPVCRE 226 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~Fh~~CI~~WL~~~----~sCPlCR~ 226 (235)
+...| ||.+.- .+. .....+ |. ..||..|+. |... -.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34566 897753 233 444445 55 689999997 4432 24999965
No 117
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.05 E-value=0.78 Score=33.06 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=30.1
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHh---cCCCCccccc
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVCRE 226 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~---~~~sCPlCR~ 226 (235)
...| ||-.....+. +.....|...||..|+..=+. ..-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 8977665544 445557999999999865322 1235999974
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.73 E-value=0.49 Score=32.75 Aligned_cols=45 Identities=29% Similarity=0.601 Sum_probs=28.4
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHhcC-----CCCcccccc
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-----GSCPVCREC 227 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~-----~sCPlCR~~ 227 (235)
.|.||.+.-. +..+.....|...||..|+++-|... =.||.|+.+
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 5667755433 33444455788999999998655422 249999863
No 119
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.03 E-value=1 Score=31.08 Aligned_cols=45 Identities=24% Similarity=0.578 Sum_probs=30.3
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhc-----CCCCccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-----NGSCPVCRE 226 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~-----~~sCPlCR~ 226 (235)
..|.||...-. +..+.....|...||..|+++=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 47889976433 3444455579999999999854432 124999975
No 120
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=72.73 E-value=1 Score=29.61 Aligned_cols=44 Identities=32% Similarity=0.615 Sum_probs=27.6
Q ss_pred cCcccccccccccCCCceeecCC--CC-CcccHHHHHHHHhc----CCCCcccccc
Q 026652 179 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTR----NGSCPVCREC 227 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~Fh~~CI~~WL~~----~~sCPlCR~~ 227 (235)
+...| ||.+.. .++ .....+ |. ..||..|+. |.. +-.||.|+..
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 44567 997753 343 444445 55 799999997 332 2349999753
No 121
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=72.65 E-value=2.6 Score=29.75 Aligned_cols=36 Identities=22% Similarity=0.483 Sum_probs=26.7
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHH
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL 215 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL 215 (235)
...|.+|...|..-..--....||++||..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 457999999997543333344799999999987653
No 122
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=71.68 E-value=2.7 Score=28.37 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=24.7
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHH
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 214 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~W 214 (235)
..|.+|...|..-..--..-.||++||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5799999998754332233469999999997543
No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=71.60 E-value=2.5 Score=31.69 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=25.8
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHH
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 214 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~W 214 (235)
...|.+|...|..-..--..-.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45799999999754333334479999999997654
No 124
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=71.59 E-value=2 Score=32.83 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=25.7
Q ss_pred cCccccccccccc-CCCceeecCCCCCcccHHHHH
Q 026652 179 NEIGCSICLEKFE-EGDSARKLPSCGHCFHSECVD 212 (235)
Q Consensus 179 ~~~~C~ICle~f~-~~~~~~~Lp~C~H~Fh~~CI~ 212 (235)
++..|.+|...|. ....-+....|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 5678999999993 333445566799999999864
No 125
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=70.48 E-value=5.4 Score=30.21 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=30.9
Q ss_pred ccCcccccccccccCCCceeecCCCCCcccHHHHHHHH-----h------cCCCCcccccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL-----T------RNGSCPVCREC 227 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL-----~------~~~sCPlCR~~ 227 (235)
..+..|.||-+. ..+.-...|-..||.+||.+-+ . ..=.|+.|+-+
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345679999753 3344445799999999999742 1 11249999753
No 126
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=70.14 E-value=2.8 Score=29.06 Aligned_cols=53 Identities=15% Similarity=0.359 Sum_probs=34.5
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHh--------cCCCCccccccccCC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--------RNGSCPVCRECVCKD 231 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~--------~~~sCPlCR~~v~~~ 231 (235)
+...|.+|...|..-..--..-.||++||..|...... ..+.|-.|-..+...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSS 80 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTS
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhc
Confidence 34689999999976433333346999999999865421 123477776555443
No 127
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=69.68 E-value=2.7 Score=29.04 Aligned_cols=51 Identities=22% Similarity=0.525 Sum_probs=32.6
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHh------cCCCCcccccccc
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT------RNGSCPVCRECVC 229 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~------~~~sCPlCR~~v~ 229 (235)
+...|.+|...|..-..--..-.||++||..|....+. ....|-.|-..+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 34579999999975433333447999999999865431 1123666655443
No 128
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=69.62 E-value=1.1 Score=30.24 Aligned_cols=45 Identities=29% Similarity=0.624 Sum_probs=29.0
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHhc-----CCCCcccccc
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-----NGSCPVCREC 227 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~-----~~sCPlCR~~ 227 (235)
.|.||...-. +..+.....|...||..|+++=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 5667765422 3344455578899999999854442 2249999753
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=68.46 E-value=0.56 Score=34.71 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=32.7
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHhcCC----CCccccccccCC
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVCKD 231 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~----sCPlCR~~v~~~ 231 (235)
.|.||.+.-.. ..+.....|...||..|+.+=|.... .||.|+..+.++
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 57888665333 34445557999999999986444322 399998766544
No 130
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=68.10 E-value=0.73 Score=34.63 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=29.9
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccc
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 226 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~ 226 (235)
...|..|...|..-..--....||++||..|........+.|-.|-.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 45899999998753322234479999999997665444555766643
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.45 E-value=2.5 Score=34.64 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=26.4
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHH
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 214 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~W 214 (235)
++..|.+|...|..-..--....||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 346899999998754333334479999999997654
No 132
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=67.04 E-value=1.6 Score=31.05 Aligned_cols=44 Identities=27% Similarity=0.547 Sum_probs=27.1
Q ss_pred ccCcccccccccccCCCceeecCCCC---CcccHHHHHHHHhc----CCCCcc-ccc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSCG---HCFHSECVDKWLTR----NGSCPV-CRE 226 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C~---H~Fh~~CI~~WL~~----~~sCPl-CR~ 226 (235)
.+...| ||.+... ++ ......|. ..||..|+. |.. +-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345567 9987433 33 33344544 689999995 322 234999 974
No 133
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=66.85 E-value=3.4 Score=29.06 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=32.6
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHh-------cCCCCcccccccc
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-------RNGSCPVCRECVC 229 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~-------~~~sCPlCR~~v~ 229 (235)
+...|.+|...|..-..--..-.||++||..|....+. ..+.|-.|-..+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 34589999999876433333346999999999765321 1234666655443
No 134
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.26 E-value=3.3 Score=28.71 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=25.2
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHH
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 214 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~W 214 (235)
+...|.+|...|..-..--..-.||++||..|....
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 345899999998653322223369999999997643
No 135
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=65.24 E-value=1.9 Score=35.93 Aligned_cols=46 Identities=28% Similarity=0.580 Sum_probs=26.9
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcC-----CCCcccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-----GSCPVCREC 227 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~-----~sCPlCR~~ 227 (235)
..|.+|...-. +..+.....|...||..|+++=|... =.||.|+.+
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 35888865422 33444555799999999998644421 249999753
No 136
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.21 E-value=1.6 Score=31.82 Aligned_cols=47 Identities=21% Similarity=0.544 Sum_probs=31.3
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHhcC----CCCcccccccc
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVCRECVC 229 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~----~sCPlCR~~v~ 229 (235)
.|.+|.+.-.+ +.+.....|...||..|+++=|... -.||.|+.-..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 57777655333 4455566799999999998654432 24999976544
No 137
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=63.95 E-value=1.9 Score=31.17 Aligned_cols=40 Identities=18% Similarity=0.544 Sum_probs=24.6
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..||+|.++++.... +.+|..|-.. +.....||-|.+++.
T Consensus 33 ~~CP~Cq~eL~~~g~--------~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--------HARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETT--------EEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCC--------EEECccccch-hhccccCcchhhHHH
Confidence 689999888765322 2234444322 345567999988874
No 138
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=62.75 E-value=0.63 Score=31.16 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=28.4
Q ss_pred cCcccccccccccCCCceeecC--CCCCcccHHHHHHH---Hh-----cCCCCcccccc
Q 026652 179 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKW---LT-----RNGSCPVCREC 227 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp--~C~H~Fh~~CI~~W---L~-----~~~sCPlCR~~ 227 (235)
+...| ||-.....+..+ ..- .|...||..|+.-- .. .+-.||.||..
T Consensus 9 ~~v~C-~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CEECC-TTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCEEe-ECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 34567 797665555444 332 48889999998310 00 13459999853
No 139
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.23 E-value=3.3 Score=27.53 Aligned_cols=40 Identities=18% Similarity=0.467 Sum_probs=26.6
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
...|+.|-+.+..++.+.. -+..||.+|. .|..|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 3578888888776665542 4567777664 47777777654
No 140
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=56.59 E-value=2.3 Score=38.00 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=0.0
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHh-------cCCCCcccccccc
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-------RNGSCPVCRECVC 229 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~-------~~~sCPlCR~~v~ 229 (235)
...|.+|...|..-..-..+..||++||..|...... ..+.|-.|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 3579999998875333233447999999999976542 1244777765543
No 141
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=56.55 E-value=2.3 Score=26.69 Aligned_cols=41 Identities=22% Similarity=0.540 Sum_probs=26.4
Q ss_pred cccccccCCCceeecCCCCCcccHHHHHHHH---hcCCCCccccc
Q 026652 185 ICLEKFEEGDSARKLPSCGHCFHSECVDKWL---TRNGSCPVCRE 226 (235)
Q Consensus 185 ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL---~~~~sCPlCR~ 226 (235)
||..... +........|..-||..|+.--- ..+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 33444455688999999985321 23346999975
No 142
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=56.52 E-value=3.5 Score=27.88 Aligned_cols=47 Identities=19% Similarity=0.382 Sum_probs=31.2
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHh-----cCCCCccccccc
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECV 228 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~-----~~~sCPlCR~~v 228 (235)
.-.||......+......-.|.--||..|+.---. ..-.||.|+..-
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 34489877654455555557999999999953211 234699998653
No 143
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=54.86 E-value=7.1 Score=30.36 Aligned_cols=47 Identities=23% Similarity=0.495 Sum_probs=30.6
Q ss_pred cCcccccccccccCC-CceeecCCCCCcccHHHHHHHHhcCCC--Cccccc
Q 026652 179 NEIGCSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLTRNGS--CPVCRE 226 (235)
Q Consensus 179 ~~~~C~ICle~f~~~-~~~~~Lp~C~H~Fh~~CI~~WL~~~~s--CPlCR~ 226 (235)
++..|.+|...|.-- ..-.....|.|.+|..|-. |+..... |-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 567999999986421 2234455799999999972 4332222 777764
No 144
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=54.36 E-value=4.2 Score=26.98 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=26.2
Q ss_pred cccccccccccCCCceeecCCCCCcccH-HHHHHHHhcCCCCcccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHS-ECVDKWLTRNGSCPVCREC 227 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~-~CI~~WL~~~~sCPlCR~~ 227 (235)
..|..|...+....-.. .=+..||. .|..+- ....|..|...
T Consensus 28 F~C~~C~~~L~~~~~~~---~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAE---HEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp CBCTTTCCBCCTTTEEE---ETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCccccCccCCCCceEC---cCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 67888887777653221 24567887 587653 34567777644
No 145
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.31 E-value=2.5 Score=30.96 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=15.6
Q ss_pred CCCCcccHHHHHHHHhcCCCCccccccc
Q 026652 201 SCGHCFHSECVDKWLTRNGSCPVCRECV 228 (235)
Q Consensus 201 ~C~H~Fh~~CI~~WL~~~~sCPlCR~~v 228 (235)
.||+.|. +=+.....||.|+..-
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 6999981 2223456799998753
No 146
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.83 E-value=8.2 Score=26.12 Aligned_cols=41 Identities=24% Similarity=0.523 Sum_probs=27.6
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
....|+.|-+.+...+.+.. -+..||..|. .|-.|+.++..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCC
Confidence 44689999988876665542 4667888774 46666666543
No 147
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=52.36 E-value=8.3 Score=21.39 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=20.1
Q ss_pred cccccccccccCCCceeecCCCCCcccHHH
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSEC 210 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~C 210 (235)
..|+.|-......+.+. .=+..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 47999988877766553 3567889888
No 148
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=51.20 E-value=5.9 Score=28.62 Aligned_cols=11 Identities=27% Similarity=1.060 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 026652 206 FHSECVDKWLT 216 (235)
Q Consensus 206 Fh~~CI~~WL~ 216 (235)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 149
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=51.11 E-value=6 Score=28.56 Aligned_cols=11 Identities=45% Similarity=1.217 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 026652 206 FHSECVDKWLT 216 (235)
Q Consensus 206 Fh~~CI~~WL~ 216 (235)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 150
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=50.99 E-value=5.8 Score=27.58 Aligned_cols=15 Identities=27% Similarity=0.767 Sum_probs=8.7
Q ss_pred cccccccccccCCCc
Q 026652 181 IGCSICLEKFEEGDS 195 (235)
Q Consensus 181 ~~C~ICle~f~~~~~ 195 (235)
..||.|..++.....
T Consensus 3 ~~CP~C~~~l~~~~~ 17 (81)
T 2jrp_A 3 ITCPVCHHALERNGD 17 (81)
T ss_dssp CCCSSSCSCCEECSS
T ss_pred CCCCCCCCccccCCC
Confidence 457777666654433
No 151
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.46 E-value=2.3 Score=24.67 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=13.5
Q ss_pred CcccccccccccCCCce
Q 026652 180 EIGCSICLEKFEEGDSA 196 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~ 196 (235)
...||||+.++...+.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 47899999998876554
No 152
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=50.18 E-value=4 Score=27.46 Aligned_cols=38 Identities=26% Similarity=0.570 Sum_probs=20.2
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..|+.|-+.+..++.+.. -+..||.+|. .|-.|++++.
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEEC
T ss_pred CcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCC
Confidence 457777666655454332 3455565553 3555555554
No 153
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.50 E-value=9.5 Score=24.73 Aligned_cols=40 Identities=28% Similarity=0.615 Sum_probs=22.7
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..|+-|-+.+...+.+.. .-+..||.+|. .|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE--YGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC--STTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE--ECccccCcccC--------eECCCCCcCCC
Confidence 467777777765422211 24566776653 46666666543
No 154
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.87 E-value=9.2 Score=24.68 Aligned_cols=35 Identities=26% Similarity=0.686 Sum_probs=16.8
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccc
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 228 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v 228 (235)
.|+-|-+.+.. +.+. .-+..||.+|. .|-.|++++
T Consensus 7 ~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L 41 (70)
T 2d8z_A 7 GCVQCKKPITT-GGVT---YREQPWHKECF--------VCTACRKQL 41 (70)
T ss_dssp BCSSSCCBCCS-SEEE---SSSSEEETTTS--------BCSSSCCBC
T ss_pred CCcccCCeecc-ceEE---ECccccCCCCC--------ccCCCCCcC
Confidence 46666555543 2221 23455555543 355555554
No 155
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.55 E-value=7.9 Score=26.14 Aligned_cols=40 Identities=23% Similarity=0.548 Sum_probs=28.0
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
....|+-|-+.+..++.+.. -+..||.+|. .|..|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 45679999888876665543 4567777664 5778877775
No 156
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.23 E-value=11 Score=24.36 Aligned_cols=39 Identities=23% Similarity=0.606 Sum_probs=20.2
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..|+.|-+.+...+.+.. .-+..||.+|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME--YKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE--ETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEE--ECcCeecccCC--------cccccCCccC
Confidence 356777666665432221 13455665553 4666665554
No 157
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.40 E-value=12 Score=25.69 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=13.0
Q ss_pred cccccccccccCCCceeecCCCCCcccHHH
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSEC 210 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~C 210 (235)
..|+-|-+.+...+.+. .-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~v~---a~~~~~H~~C 42 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLL---ANQQVFHISC 42 (91)
T ss_dssp CBCTTTCCBCCTTSEEE---CSSSEEETTT
T ss_pred CcCccCCCccCCceeEE---ECCCEECCCC
Confidence 45666655555444332 1344555544
No 158
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.75 E-value=9.3 Score=25.14 Aligned_cols=42 Identities=21% Similarity=0.542 Sum_probs=25.9
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
....|+-|-+.+...+.+.. .-+..||..|. .|-.|++++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE--ETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEE--eCccEeccccC--------eECCCCCCCCC
Confidence 34678888888775444322 14567777663 47777766654
No 159
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=44.90 E-value=9.8 Score=29.97 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=18.0
Q ss_pred hhhhhhhHhhhhhhhHHHHHHHhhh-ccchhhHHHHHHHHHH
Q 026652 4 GLVSEVIKMSLTCKETVSLWLFATM-CAFGTGVLIRAMKRVL 44 (235)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 44 (235)
..|.|...+..++. .+|.+ -..|...+.++.....
T Consensus 13 ~afagEs~A~~~Y~------~~A~~A~~eG~~~iA~~F~~~A 48 (170)
T 3pwf_A 13 EAFAGESMAHMRYL------IFAEKAEQEGFPNIAKLFRAIA 48 (170)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHcCHHHHHHHHHHHH
Confidence 45566666666665 22222 2346666666555443
No 160
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=44.28 E-value=1.9 Score=28.20 Aligned_cols=48 Identities=25% Similarity=0.632 Sum_probs=27.8
Q ss_pred ccCccccccccc-ccCCCceeecCCCCCcccHHHHHHHHhcCCC----Cccccc
Q 026652 178 DNEIGCSICLEK-FEEGDSARKLPSCGHCFHSECVDKWLTRNGS----CPVCRE 226 (235)
Q Consensus 178 ~~~~~C~ICle~-f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~s----CPlCR~ 226 (235)
.+...|.||+.. |.++.--. ..-|.-.||..|-.+|-.+.+. |-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~-C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHN-CSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEE-BTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCcc-ccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 456789999764 44433222 2236667777776666433322 777765
No 161
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=44.25 E-value=17 Score=28.50 Aligned_cols=34 Identities=29% Similarity=0.600 Sum_probs=25.0
Q ss_pred cCcccccccccccCCCceeecC--CCCCcccHHHHHHHHh
Q 026652 179 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWLT 216 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp--~C~H~Fh~~CI~~WL~ 216 (235)
.+..|.||-+. ..+.... .|...||.+||+.++-
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 35789999753 3444443 5889999999998875
No 162
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=44.10 E-value=2.1 Score=29.81 Aligned_cols=41 Identities=24% Similarity=0.575 Sum_probs=25.3
Q ss_pred cccccccccC--CCceeecCCCCCcccHHHHHHHHhcCC--CCcc
Q 026652 183 CSICLEKFEE--GDSARKLPSCGHCFHSECVDKWLTRNG--SCPV 223 (235)
Q Consensus 183 C~ICle~f~~--~~~~~~Lp~C~H~Fh~~CI~~WL~~~~--sCPl 223 (235)
||=|-.-+.. +......|.|+|.||..|-..|=+.|. +|..
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHH
Confidence 6655443321 223356778999999999988844443 4543
No 163
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.10 E-value=9.2 Score=24.42 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=24.2
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..|+.|-+.+. ++.+. .-+..||.+|. .|..|+.++..
T Consensus 6 ~~C~~C~~~I~-~~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVN---AMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEEC---CTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEEE---ECccccccCcC--------EECCCCCCCCC
Confidence 46888887777 34332 24567777664 47777777654
No 164
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.09 E-value=5.5 Score=25.88 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=25.3
Q ss_pred CcccccccccccCCCce--eecCC--CCCcccHHHHHHHHhc
Q 026652 180 EIGCSICLEKFEEGDSA--RKLPS--CGHCFHSECVDKWLTR 217 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~--~~Lp~--C~H~Fh~~CI~~WL~~ 217 (235)
...||-|...++..+.- ...+. |+|.||..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 35788888777765422 12223 8888999998888643
No 165
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.83 E-value=14 Score=23.92 Aligned_cols=39 Identities=21% Similarity=0.538 Sum_probs=22.5
Q ss_pred cccccccccccC--CCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 181 IGCSICLEKFEE--GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 181 ~~C~ICle~f~~--~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..|+-|-+.+.. .+.+.. .-+..||.+|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCC
Confidence 467778777764 222211 24567776664 4667766664
No 166
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.06 E-value=15 Score=23.69 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=4.6
Q ss_pred cccccccccc
Q 026652 182 GCSICLEKFE 191 (235)
Q Consensus 182 ~C~ICle~f~ 191 (235)
.|+.|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x61_A 7 GCGGCGEDVV 16 (72)
T ss_dssp CCSSSCSCCC
T ss_pred CCccCCCccC
Confidence 4444544444
No 167
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=41.86 E-value=12 Score=27.68 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=28.5
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
...|+-|-+.+.....+. .-+..||..|. .|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEccccc--------CcCcCCCccc
Confidence 458999998888654443 25678888774 5888888875
No 168
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=41.73 E-value=8.6 Score=30.75 Aligned_cols=9 Identities=33% Similarity=0.907 Sum_probs=6.7
Q ss_pred CCCcccccc
Q 026652 219 GSCPVCREC 227 (235)
Q Consensus 219 ~sCPlCR~~ 227 (235)
..||+|..+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 378988775
No 169
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.67 E-value=17 Score=24.68 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=27.8
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
....|.-|-+.+.. +.+. .-+..||.+|. .|-.|+.++..
T Consensus 24 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK---ARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE---SSSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEEE---ECCceECccCC--------EecCCCCCCCC
Confidence 34679999888875 3332 35678888774 58888877754
No 170
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=41.67 E-value=4.3 Score=27.87 Aligned_cols=40 Identities=23% Similarity=0.576 Sum_probs=24.3
Q ss_pred Cccccc--ccccccC--CCceeecC-----CCCCcccHHHHHHHHhcCCCC
Q 026652 180 EIGCSI--CLEKFEE--GDSARKLP-----SCGHCFHSECVDKWLTRNGSC 221 (235)
Q Consensus 180 ~~~C~I--Cle~f~~--~~~~~~Lp-----~C~H~Fh~~CI~~WL~~~~sC 221 (235)
..-||- |-..+.. +......| .|+|.||..|-..|=. .+|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccc
Confidence 344665 5433321 23334565 7999999999998833 445
No 171
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.36 E-value=17 Score=24.09 Aligned_cols=40 Identities=23% Similarity=0.676 Sum_probs=25.9
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..|+.|-+.+..++.+.. .=+..||.+|. .|-.|++++..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE--YKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE--CSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEE--ECccccccccC--------chhhCCCccCC
Confidence 578888888776554322 24567777664 57777777654
No 172
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.71 E-value=14 Score=24.65 Aligned_cols=39 Identities=13% Similarity=0.334 Sum_probs=24.6
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
...|+-|-+.+. ++.+. .-+..||.+|. .|..|+.++..
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCCC--------EeCCCCCccCC
Confidence 457888888777 33332 25667777663 57777776653
No 173
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.70 E-value=13 Score=23.95 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=6.0
Q ss_pred ccccccccccc
Q 026652 181 IGCSICLEKFE 191 (235)
Q Consensus 181 ~~C~ICle~f~ 191 (235)
..|.-|-+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (70)
T 2d8x_A 6 SGCHQCGEFII 16 (70)
T ss_dssp SBCSSSCCBCC
T ss_pred CcCccCCCEec
Confidence 34666655554
No 174
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.38 E-value=12 Score=24.04 Aligned_cols=10 Identities=30% Similarity=0.840 Sum_probs=5.2
Q ss_pred cccccccccc
Q 026652 182 GCSICLEKFE 191 (235)
Q Consensus 182 ~C~ICle~f~ 191 (235)
.|+-|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 4555555544
No 175
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=39.88 E-value=8.8 Score=21.13 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=8.2
Q ss_pred CCCccccccccC
Q 026652 219 GSCPVCRECVCK 230 (235)
Q Consensus 219 ~sCPlCR~~v~~ 230 (235)
..||+|+...++
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 358888876654
No 176
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.41 E-value=16 Score=24.23 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=25.9
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
....|+-|-+.+.. +.+. .-+..||.+|. .|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVK---LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEE---CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEEE---ECcceeCcCcC--------eeCCCCCCCC
Confidence 34679999888775 3332 35678888774 4777776654
No 177
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=39.32 E-value=6.5 Score=30.75 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=1.9
Q ss_pred hhhhhhhhhhhccc
Q 026652 55 GGAIVGTIFGAMKG 68 (235)
Q Consensus 55 ~g~~~g~~~ga~~g 68 (235)
.|+.+|+.+|+.+|
T Consensus 8 ~ga~~g~~~g~~ig 21 (169)
T 3ldt_A 8 IGAAAGGTVGLVAS 21 (169)
T ss_dssp ---------CCTTH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 178
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=39.11 E-value=8.5 Score=29.78 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=16.5
Q ss_pred eecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 197 RKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 197 ~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..++.|+|.|-.. .....||.|..++.
T Consensus 133 y~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 133 YVCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EEESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred EECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 3455688877532 22346888887754
No 179
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.99 E-value=21 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=11.7
Q ss_pred ccccccccccCCCceeecCCCCCcccHHH
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSEC 210 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~C 210 (235)
.|+-|-+.+.. +.+. .-+..||.+|
T Consensus 7 ~C~~C~~~I~~-~~v~---a~~~~wH~~C 31 (73)
T 1wig_A 7 GCDSCEKYITG-RVLE---AGEKHYHPSC 31 (73)
T ss_dssp SCSSSCCCCSS-CCBC---CSSCCBCTTT
T ss_pred CcccCCCEecC-eeEE---eCCCCCCCCc
Confidence 46666555543 2221 2445555554
No 180
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.49 E-value=19 Score=32.18 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=30.4
Q ss_pred cCcccccccccccCCCceeecC--CCCCcccHHHHHHHHhc----------CCCCccccc
Q 026652 179 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWLTR----------NGSCPVCRE 226 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp--~C~H~Fh~~CI~~WL~~----------~~sCPlCR~ 226 (235)
.+..|.+|-+. ..+.... .|...||.+||+..+-. .=.|=+|.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 35789999753 3344444 69999999999998731 224877763
No 181
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.48 E-value=11 Score=25.78 Aligned_cols=39 Identities=21% Similarity=0.487 Sum_probs=24.3
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
...|+-|-+.+. ++.+. .-+..||.+|. .|..|+.++..
T Consensus 25 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV---ALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE---ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE---ECCccccccCC--------ccCCCCCCCCC
Confidence 457888887774 33332 24667777664 47777776653
No 182
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.46 E-value=18 Score=23.77 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=22.1
Q ss_pred cccccccccccC--C-CceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 181 IGCSICLEKFEE--G-DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 181 ~~C~ICle~f~~--~-~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..|+.|-+.+.. . +.+. .-+..||.+|. .|..|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~---a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC---FQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE---ETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEE---ECCcccCcccC--------ChhhCCCcCC
Confidence 467888777764 2 2222 24566777664 4666666654
No 183
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=37.15 E-value=6.2 Score=30.86 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhcc
Q 026652 54 LGGAIVGTIFGAMK 67 (235)
Q Consensus 54 ~~g~~~g~~~ga~~ 67 (235)
+.|+++||.+|+++
T Consensus 3 ~~ga~~ga~~g~~~ 16 (169)
T 3ldt_A 3 LSGTLIGAAAGGTV 16 (169)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 184
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=36.89 E-value=14 Score=23.65 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=17.9
Q ss_pred ccCcccccccccccCCCceeecC--CCCCcc
Q 026652 178 DNEIGCSICLEKFEEGDSARKLP--SCGHCF 206 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp--~C~H~F 206 (235)
-+...||+|...+...+..-..+ .|++.|
T Consensus 8 L~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 8 LEILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TTSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred HhheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 35578999998765443333344 566665
No 185
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.38 E-value=26 Score=25.37 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=33.3
Q ss_pred cccccccccccC-CCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 181 IGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 181 ~~C~ICle~f~~-~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..|..|-..+.+ +.... . .=+..||..|..+-+..+..|..|.++|..
T Consensus 33 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 578888877753 11111 1 356789999988866655589999998875
No 186
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=35.99 E-value=9.8 Score=20.49 Aligned_cols=10 Identities=40% Similarity=1.165 Sum_probs=5.5
Q ss_pred CCcccccccc
Q 026652 220 SCPVCRECVC 229 (235)
Q Consensus 220 sCPlCR~~v~ 229 (235)
.||+|.+.++
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 3666665443
No 187
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=34.92 E-value=17 Score=29.30 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=14.8
Q ss_pred eeecCCCCCcccHHHHHHHHhcCCCCcccccc
Q 026652 196 ARKLPSCGHCFHSECVDKWLTRNGSCPVCREC 227 (235)
Q Consensus 196 ~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~ 227 (235)
..+++.|||++-. .....||+|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 3445567777532 123479999765
No 188
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=33.92 E-value=27 Score=25.34 Aligned_cols=9 Identities=22% Similarity=0.925 Sum_probs=4.4
Q ss_pred CCccccccc
Q 026652 220 SCPVCRECV 228 (235)
Q Consensus 220 sCPlCR~~v 228 (235)
.|-.|++++
T Consensus 96 ~C~~C~~~L 104 (131)
T 2xjy_A 96 KCAACQKHF 104 (131)
T ss_dssp BCTTTCCBC
T ss_pred ccCCCCCCC
Confidence 355555444
No 189
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=33.59 E-value=21 Score=22.79 Aligned_cols=42 Identities=21% Similarity=0.545 Sum_probs=28.4
Q ss_pred CcccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccCC
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 231 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~~ 231 (235)
...|+-|-+.+...+.+.. .=+..||..|. .|-.|++++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE--ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE--eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4579999888887665432 14567887775 577787776543
No 190
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.10 E-value=24 Score=23.30 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=20.0
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..|+.|-+.+. +..+. .-+..||.+|. .|..|+.++.
T Consensus 16 ~~C~~C~~~I~-~~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV---AGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCBC---CTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEEE---ECCceeccccC--------CccCCCCccC
Confidence 35777766666 23222 24556665553 4666666654
No 191
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.84 E-value=24 Score=23.21 Aligned_cols=37 Identities=22% Similarity=0.609 Sum_probs=20.9
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..|+-|-+.+... .+. .=+..||.+|. .|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~-~v~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GVT---YRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-CEE---SSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc-EEE---ECCchhhhhhC--------CcccCCCcCC
Confidence 4677777666542 222 24566666653 4666666664
No 192
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.43 E-value=31 Score=24.66 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=17.9
Q ss_pred cccccccccccC-CCceeecCCCCCcccHHHHHHHHh
Q 026652 181 IGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLT 216 (235)
Q Consensus 181 ~~C~ICle~f~~-~~~~~~Lp~C~H~Fh~~CI~~WL~ 216 (235)
..|..|-..+.. +.... ..=+..||..|..+-+.
T Consensus 31 F~C~~C~~~L~~~g~~~~--~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLY--YKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCCSSSCSCCCCSSSCCC--CBTTBCCCHHHHHHHHT
T ss_pred CcccccCCchhcCCCeeE--EECCeeechHHHHHHhC
Confidence 567777666653 21111 12455677777766443
No 193
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=32.08 E-value=38 Score=24.38 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=23.3
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..|..|...+....-. . .=+..||..|..+- ....|+.|.++|..
T Consensus 31 F~C~~C~~~L~~~~f~--~-~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYV--M-VNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTSEEE--E-ETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcCEEE--e-ECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 4566666655432111 1 23555666666542 33556666666654
No 194
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.97 E-value=11 Score=34.86 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=31.2
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHh-----cCCCCcccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCREC 227 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~-----~~~sCPlCR~~ 227 (235)
..| ||......+.....+..|.--||..|+.---. .+-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 445 99887754555555667999999999952111 23469999854
No 195
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.82 E-value=24 Score=23.46 Aligned_cols=44 Identities=30% Similarity=0.561 Sum_probs=26.0
Q ss_pred CcccccccccccCCCceeecCCCC---CcccHHHHHHHHhc----CCCCccccccc
Q 026652 180 EIGCSICLEKFEEGDSARKLPSCG---HCFHSECVDKWLTR----NGSCPVCRECV 228 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~~~Lp~C~---H~Fh~~CI~~WL~~----~~sCPlCR~~v 228 (235)
...| ||.+. ..+..+ ....|. ..||..|+. |.. +-.||.|+...
T Consensus 6 ~~yC-~C~~~-~~g~MI-~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQV-SYGEMV-GCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCC-CCSSEE-CCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCC-CCCCEe-EeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 3455 58765 334333 333442 689999996 222 23499998654
No 196
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=31.70 E-value=33 Score=23.76 Aligned_cols=33 Identities=30% Similarity=0.637 Sum_probs=21.5
Q ss_pred CcccccccccccCCCce-eecCCCCCcccHHHHHH
Q 026652 180 EIGCSICLEKFEEGDSA-RKLPSCGHCFHSECVDK 213 (235)
Q Consensus 180 ~~~C~ICle~f~~~~~~-~~Lp~C~H~Fh~~CI~~ 213 (235)
...|.||.+.- .+..+ ...++|.-.||..|-.+
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHH
Confidence 46899996531 12222 22336888999999875
No 197
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.57 E-value=21 Score=23.74 Aligned_cols=37 Identities=27% Similarity=0.633 Sum_probs=22.5
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..|+-|-+.+.. +.+. .-+..||.+|. .|-.|++++.
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS---ALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEecc-ceEE---ECCceeCccCC--------ccccCCCCCC
Confidence 478888887773 4333 24567777664 3555555554
No 198
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.78 E-value=29 Score=22.99 Aligned_cols=40 Identities=18% Similarity=0.434 Sum_probs=25.1
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..|+.|-+.+...+.+.. .=+..||..|. .|-.|++++..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccCC--------eecCCCCccCC
Confidence 479999888874333321 14567777764 47777777653
No 199
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=30.73 E-value=5.1 Score=29.17 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=27.1
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHh----c----CCCCcccccc
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT----R----NGSCPVCREC 227 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~----~----~~sCPlCR~~ 227 (235)
.|..|.++...+..+.....|.+.||..|...-.. . .-.||.|+..
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 44555544444444555567999999999864221 1 1239999754
No 200
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.23 E-value=22 Score=24.28 Aligned_cols=35 Identities=17% Similarity=0.447 Sum_probs=24.5
Q ss_pred cccCcccccccccccC-CCceeecCCCCCcccHHHH
Q 026652 177 LDNEIGCSICLEKFEE-GDSARKLPSCGHCFHSECV 211 (235)
Q Consensus 177 ~~~~~~C~ICle~f~~-~~~~~~Lp~C~H~Fh~~CI 211 (235)
.+.+..|..|.+.|.. ...-...+.|.|..|.+|=
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 3567899999998863 1233345579998888874
No 201
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.71 E-value=14 Score=24.67 Aligned_cols=8 Identities=0% Similarity=-0.317 Sum_probs=4.2
Q ss_pred Cccccccc
Q 026652 221 CPVCRECV 228 (235)
Q Consensus 221 CPlCR~~v 228 (235)
||-|+..+
T Consensus 29 C~~cg~~Y 36 (69)
T 2pk7_A 29 SKGAGLAY 36 (69)
T ss_dssp ETTTTEEE
T ss_pred cCCCCcEe
Confidence 55555443
No 202
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=29.62 E-value=28 Score=23.17 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=23.3
Q ss_pred ccCcccccccccccCCCceeecCCC-CCcccHHHHHHH
Q 026652 178 DNEIGCSICLEKFEEGDSARKLPSC-GHCFHSECVDKW 214 (235)
Q Consensus 178 ~~~~~C~ICle~f~~~~~~~~Lp~C-~H~Fh~~CI~~W 214 (235)
++..-|.||.++- .++-+ .| +-+||..|...-
T Consensus 6 ee~pWC~ICneDA----tlrC~-gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLRCA-GCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCC----CEEET-TTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCC----eEEec-CCCCceehHHHHHHH
Confidence 4557899998872 24545 49 779999998764
No 203
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.17 E-value=27 Score=27.41 Aligned_cols=37 Identities=24% Similarity=0.703 Sum_probs=16.5
Q ss_pred ccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccc
Q 026652 182 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 228 (235)
Q Consensus 182 ~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v 228 (235)
.|..|-+.+...+.+.. .-++.||..| ..|-.|++++
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C--------F~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC--------FTCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG--------CBCTTTCCBC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC--------CeECCCCCCC
Confidence 35555554443332211 1345555554 2455555554
No 204
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.81 E-value=22 Score=23.42 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=20.8
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..|+-|-+.+.. +.+. .-+..||.+|. .|..|+.++..
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS---AMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEE---ETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEE---ECCCeEecCcC--------ChhhCCCCCCC
Confidence 457777666654 3232 23455666553 46666666643
No 205
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=28.73 E-value=15 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=14.8
Q ss_pred hhhhhhhhhhhccccccccCCcc
Q 026652 55 GGAIVGTIFGAMKGQTTETGFLH 77 (235)
Q Consensus 55 ~g~~~g~~~ga~~g~~t~~g~~~ 77 (235)
+|.++++++||+++-...|-..|
T Consensus 16 G~vvvv~i~~ali~VSq~D~v~R 38 (39)
T 3arc_X 16 GAVVLGLTFAVLIAISQIDKVQR 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHheeEeccCcccc
Confidence 45557777888777666655444
No 206
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.57 E-value=22 Score=23.53 Aligned_cols=37 Identities=24% Similarity=0.675 Sum_probs=19.6
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCcccccccc
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 229 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~ 229 (235)
..|+-|-+.+.. ..+. .-+..||.+|. +|..|+.++.
T Consensus 16 ~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILD-RILR---AMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTTC--------BCSSSCCBCT
T ss_pred CccccCCCeecc-eeEE---ECCccccHHhc--------CcccCCCccC
Confidence 456666666653 2222 13455665553 4666666554
No 207
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.63 E-value=17 Score=22.38 Aligned_cols=8 Identities=50% Similarity=1.302 Sum_probs=6.4
Q ss_pred CCcccccc
Q 026652 220 SCPVCREC 227 (235)
Q Consensus 220 sCPlCR~~ 227 (235)
.||+|..+
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 69999865
No 208
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.82 E-value=33 Score=24.87 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=15.4
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHH
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL 215 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL 215 (235)
..|..|-..+..++.... .=+..||..|..+.+
T Consensus 37 F~C~~C~~~L~~g~~f~~--~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLL--INSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEEE--CSSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEEe--eCCEEEcHHHhHHHh
Confidence 455555555533332211 134556666655544
No 209
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=26.41 E-value=13 Score=27.72 Aligned_cols=7 Identities=29% Similarity=0.966 Sum_probs=0.7
Q ss_pred hhhhhhc
Q 026652 60 GTIFGAM 66 (235)
Q Consensus 60 g~~~ga~ 66 (235)
||++|.|
T Consensus 9 GAvvGgl 15 (121)
T 1tpx_A 9 GAVVGGL 15 (121)
T ss_dssp -----CC
T ss_pred hHHhhcc
Confidence 3333333
No 210
>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...
Probab=25.42 E-value=14 Score=27.85 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=0.7
Q ss_pred hhhhhhhccc
Q 026652 59 VGTIFGAMKG 68 (235)
Q Consensus 59 ~g~~~ga~~g 68 (235)
+||++|.|.|
T Consensus 29 AGAVvGGlgG 38 (142)
T 3heq_A 29 AGAVVGGLGG 38 (142)
T ss_dssp --------CC
T ss_pred hhhhhhccch
Confidence 3444444333
No 211
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=25.12 E-value=23 Score=22.19 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=15.3
Q ss_pred hhhhhhhhhhhccccccccCCcc
Q 026652 55 GGAIVGTIFGAMKGQTTETGFLH 77 (235)
Q Consensus 55 ~g~~~g~~~ga~~g~~t~~g~~~ 77 (235)
+|.++++++||+++-...|-..|
T Consensus 26 G~vVvv~i~~aLi~VSq~D~v~R 48 (50)
T 3bz1_X 26 GAVVLGLTFAVLIAISQIDKVQR 48 (50)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHheeeeccCcccc
Confidence 45567778888887777666554
No 212
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.12 E-value=13 Score=24.70 Aligned_cols=19 Identities=21% Similarity=0.168 Sum_probs=12.3
Q ss_pred HHHHhcCCCCccccccccC
Q 026652 212 DKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 212 ~~WL~~~~sCPlCR~~v~~ 230 (235)
++||..--.||+|+.++..
T Consensus 4 d~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEE
T ss_pred CHHHHHHhCCCCCCCcCeE
Confidence 3455556668888877653
No 213
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.27 E-value=30 Score=22.51 Aligned_cols=39 Identities=21% Similarity=0.529 Sum_probs=26.4
Q ss_pred cccccccccccC---C-CceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 181 IGCSICLEKFEE---G-DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 181 ~~C~ICle~f~~---~-~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..|+-|-+.+.. . +.+.. =+..||.+|. .|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY---EGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE---TTEEEETTTC--------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEE---CcceeCcccC--------EehhcCCCCCC
Confidence 579999888874 2 33332 4567887774 58888888764
No 214
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=23.28 E-value=53 Score=22.47 Aligned_cols=45 Identities=13% Similarity=0.428 Sum_probs=28.8
Q ss_pred cccccccccccCCCceeecCCCCCcccHHHHHHHHhcCCCCccccccccC
Q 026652 181 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 230 (235)
Q Consensus 181 ~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~CI~~WL~~~~sCPlCR~~v~~ 230 (235)
..|..|...+....-.. .=+..||..|..+ .....|..|.++|.+
T Consensus 34 F~C~~C~~~L~~~~~~~---~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANETFVA---KDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSSCCEE---ETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcCeeEC---cCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 56788877775432221 2466788887643 234679999888874
No 215
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=22.51 E-value=31 Score=27.48 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=23.5
Q ss_pred eeecCCCCCcccHHHHHH------HHh-----cCCCCcccccccc
Q 026652 196 ARKLPSCGHCFHSECVDK------WLT-----RNGSCPVCRECVC 229 (235)
Q Consensus 196 ~~~Lp~C~H~Fh~~CI~~------WL~-----~~~sCPlCR~~v~ 229 (235)
......|.+.||..|..- -+. ..-.||.|+..-+
T Consensus 21 MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 21 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp EEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred eEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 555667999999999842 111 1568999987543
No 216
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.04 E-value=45 Score=29.19 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=23.9
Q ss_pred Cccccccccccc-CCCceeecCCCCCcccHHHHHH
Q 026652 180 EIGCSICLEKFE-EGDSARKLPSCGHCFHSECVDK 213 (235)
Q Consensus 180 ~~~C~ICle~f~-~~~~~~~Lp~C~H~Fh~~CI~~ 213 (235)
...|..|-..+. ....-..+..|+..+|..|..+
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 467999988774 2222233446999999999865
No 217
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=21.61 E-value=81 Score=20.49 Aligned_cols=36 Identities=25% Similarity=0.626 Sum_probs=29.0
Q ss_pred cCcccccccccccCCCceeecCCCCCcccHH-HHHHH
Q 026652 179 NEIGCSICLEKFEEGDSARKLPSCGHCFHSE-CVDKW 214 (235)
Q Consensus 179 ~~~~C~ICle~f~~~~~~~~Lp~C~H~Fh~~-CI~~W 214 (235)
-...|.-|..++..+.....--..-|.||.. ||...
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 3568999999999998776666688999764 88775
No 218
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.90 E-value=22 Score=25.40 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=6.0
Q ss_pred Cccccccccc
Q 026652 180 EIGCSICLEK 189 (235)
Q Consensus 180 ~~~C~ICle~ 189 (235)
...||+|-++
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 3457777554
Done!