Query 026653
Match_columns 235
No_of_seqs 152 out of 1550
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 2.9E-46 6.3E-51 318.7 15.1 210 10-223 2-212 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 3.8E-22 8.2E-27 146.5 7.6 87 137-223 1-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 3.5E-21 7.6E-26 141.4 5.5 86 16-104 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 6.6E-14 1.4E-18 120.1 6.6 90 134-223 4-94 (243)
5 COG4095 Uncharacterized conser 99.3 4.1E-12 9E-17 91.7 5.7 84 135-221 4-87 (89)
6 COG4095 Uncharacterized conser 99.3 8.8E-12 1.9E-16 90.0 7.0 86 11-102 2-87 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.8 1.8E-07 3.9E-12 80.1 12.9 188 15-212 5-213 (220)
8 PF04193 PQ-loop: PQ loop repe 98.0 1.1E-05 2.3E-10 54.9 5.2 55 15-74 3-57 (61)
9 PF04193 PQ-loop: PQ loop repe 98.0 1.5E-05 3.2E-10 54.2 5.3 56 137-195 3-58 (61)
10 KOG3211 Predicted endoplasmic 97.8 0.00034 7.4E-09 58.7 10.8 194 15-222 32-226 (230)
11 KOG2913 Predicted membrane pro 97.2 0.0082 1.8E-07 52.6 12.0 199 18-222 10-249 (260)
12 PRK01021 lpxB lipid-A-disaccha 96.7 0.069 1.5E-06 52.1 15.3 204 10-230 6-228 (608)
13 TIGR00951 2A43 Lysosomal Cysti 96.1 0.0097 2.1E-07 51.0 4.9 50 136-188 4-53 (220)
14 smart00679 CTNS Repeated motif 94.9 0.029 6.3E-07 32.8 2.6 27 31-57 2-28 (32)
15 PF03650 MPC: Uncharacterised 93.9 0.018 3.9E-07 44.5 0.2 62 164-225 39-102 (119)
16 smart00679 CTNS Repeated motif 93.5 0.062 1.3E-06 31.3 2.1 28 153-180 2-29 (32)
17 PHA02246 hypothetical protein 91.6 6.5 0.00014 31.9 15.3 165 26-211 14-185 (192)
18 PF03650 MPC: Uncharacterised 91.2 0.052 1.1E-06 41.9 -0.4 62 42-104 39-100 (119)
19 KOG1589 Uncharacterized conser 90.6 0.11 2.4E-06 39.3 0.9 67 30-102 36-102 (118)
20 PF10688 Imp-YgjV: Bacterial i 89.8 4.1 8.8E-05 33.2 9.6 150 13-211 4-153 (163)
21 KOG2913 Predicted membrane pro 87.5 1.2 2.6E-05 39.1 5.3 59 134-195 7-65 (260)
22 KOG1589 Uncharacterized conser 85.3 0.21 4.5E-06 37.9 -0.5 57 164-220 43-101 (118)
23 PHA02246 hypothetical protein 81.6 16 0.00035 29.7 8.8 35 27-61 119-153 (192)
24 PF07578 LAB_N: Lipid A Biosyn 73.8 2.3 5.1E-05 29.9 1.7 45 163-207 21-65 (72)
25 KOG3211 Predicted endoplasmic 72.5 5.5 0.00012 33.9 3.9 70 29-100 154-223 (230)
26 PF06946 Phage_holin_5: Phage 68.2 7.9 0.00017 28.6 3.5 60 171-230 34-93 (93)
27 PF01034 Syndecan: Syndecan do 63.4 2.6 5.6E-05 29.0 0.2 27 207-233 23-53 (64)
28 KOG3145 Cystine transporter Cy 60.2 41 0.00089 30.4 7.1 21 30-50 137-157 (372)
29 COG3952 Predicted membrane pro 59.4 6.9 0.00015 29.6 1.9 56 161-216 47-102 (113)
30 PF05602 CLPTM1: Cleft lip and 56.3 28 0.00062 32.7 5.9 73 19-94 304-377 (438)
31 PF07578 LAB_N: Lipid A Biosyn 55.2 26 0.00056 24.7 4.1 52 33-88 14-65 (72)
32 KOG2489 Transmembrane protein 52.0 1.3E+02 0.0027 29.2 9.3 167 22-191 326-521 (592)
33 PRK10746 putative transport pr 51.5 63 0.0014 30.3 7.5 30 133-162 357-386 (461)
34 PF09586 YfhO: Bacterial membr 51.2 2.8E+02 0.006 28.1 13.5 27 19-48 221-247 (843)
35 COG3952 Predicted membrane pro 43.5 1.1E+02 0.0024 23.2 6.1 86 7-99 19-104 (113)
36 PF10688 Imp-YgjV: Bacterial i 41.1 12 0.00027 30.3 0.8 37 54-93 118-154 (163)
37 PRK01021 lpxB lipid-A-disaccha 39.9 2.4E+02 0.0052 28.0 9.5 82 10-98 136-217 (608)
38 KOG3106 ER lumen protein retai 35.1 70 0.0015 27.0 4.4 59 152-215 129-191 (212)
39 PRK10580 proY putative proline 32.4 2.4E+02 0.0052 26.2 8.2 30 133-162 354-383 (457)
40 KOG4314 Predicted carbohydrate 31.3 2.1E+02 0.0044 24.6 6.6 53 130-182 126-178 (290)
41 PF01372 Melittin: Melittin; 29.0 91 0.002 17.3 2.7 16 29-44 9-24 (26)
42 PRK05771 V-type ATP synthase s 27.8 6E+02 0.013 25.1 14.2 40 29-74 325-364 (646)
43 KOG2532 Permease of the major 26.3 2.1E+02 0.0046 27.1 6.7 146 9-156 257-412 (466)
44 PRK10580 proY putative proline 24.9 3E+02 0.0066 25.5 7.4 30 14-43 357-386 (457)
45 KOG1590 Uncharacterized conser 24.3 65 0.0014 25.0 2.2 67 151-219 36-104 (132)
46 TIGR00905 2A0302 transporter, 23.3 2.6E+02 0.0056 26.2 6.6 27 204-230 421-447 (473)
47 PRK13183 psbN photosystem II r 23.3 78 0.0017 20.3 2.1 26 205-231 17-42 (46)
48 PF07857 DUF1632: CEO family ( 22.9 1.5E+02 0.0033 25.9 4.6 66 136-201 180-254 (254)
49 PRK11387 S-methylmethionine tr 21.7 3.4E+02 0.0073 25.4 7.0 27 16-42 366-392 (471)
50 PF14184 YrvL: Regulatory prot 21.3 4.1E+02 0.0088 20.8 6.8 97 2-104 31-129 (132)
51 PF02468 PsbN: Photosystem II 21.2 1E+02 0.0022 19.5 2.3 29 202-231 11-39 (43)
52 PF13491 DUF4117: Domain of un 21.0 2E+02 0.0044 22.7 4.7 16 134-149 42-57 (171)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=2.9e-46 Score=318.65 Aligned_cols=210 Identities=45% Similarity=0.766 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHH
Q 026653 10 LTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQ 89 (235)
Q Consensus 10 ~~~~~~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~ 89 (235)
+....+.+|.+|+++|+.+|++|+|+++||+|+||+|+.+..||+++.+||.+|+.|| .+.+++..++.+|++|++++
T Consensus 2 ~~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie 79 (243)
T KOG1623|consen 2 GNVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIE 79 (243)
T ss_pred cchHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999 56664688999999999999
Q ss_pred HHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHhhhhheeeecCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhhcCccc
Q 026653 90 LVYIILFITYTEKDKKVRMLG-LLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVE 168 (235)
Q Consensus 90 ~~y~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~ 168 (235)
++|+..|+.|+++|+...... ..... +...++++....++++.+.+.+|.+|++++++||+|||..+++++|+||+|
T Consensus 80 ~~Yi~~f~~ya~~k~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE 157 (243)
T KOG1623|consen 80 TVYISIFLYYAPKKKTVKIVLALVLGV--IGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVE 157 (243)
T ss_pred HHHHHHHheecCchheeEeeehHHHHH--HHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCcee
Confidence 999999999999987332221 11111 111222333446778888999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHhHHHHHhhhcccCCceEEechhHHHHHHHHHhhheeEecCCCC
Q 026653 169 FMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSG 223 (235)
Q Consensus 169 ~~~~~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~~ 223 (235)
.||++++++.++++..|++||++.+|.++.+||++|+.++.+|+.+|+.|++++.
T Consensus 158 ~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~ 212 (243)
T KOG1623|consen 158 YMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTE 212 (243)
T ss_pred eechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcc
Confidence 9999999999999999999999999999999999999999999999999998763
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.87 E-value=3.8e-22 Score=146.55 Aligned_cols=87 Identities=37% Similarity=0.518 Sum_probs=84.4
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcccCCceEEechhHHHHHHHHHhhhee
Q 026653 137 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYF 216 (235)
Q Consensus 137 ~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l~~~ql~l~~ 216 (235)
+++|.+|.+.++++++||++++++++|+|+++++|+.++++.++||.+|+.||++++|++++.+|.+|..++..|+.+|+
T Consensus 1 ~~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 1 QVLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 026653 217 NYKETSG 223 (235)
Q Consensus 217 ~y~~~~~ 223 (235)
+|+++|+
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.83 E-value=3.5e-21 Score=141.39 Aligned_cols=86 Identities=27% Similarity=0.626 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHHHHHhh
Q 026653 16 AVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIIL 95 (235)
Q Consensus 16 ~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~~y~~~ 95 (235)
++|.+|.+.++.+++||+|+++|++|+||+|++|+.|++...+||.+|+.|| ++.+| .+++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d-~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILIND-WPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCC-eeEEeeHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999999999999 67755 68999999999999999999
Q ss_pred hhhcccchh
Q 026653 96 FITYTEKDK 104 (235)
Q Consensus 96 ~~~y~~~~~ 104 (235)
|++|+++||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.47 E-value=6.6e-14 Score=120.12 Aligned_cols=90 Identities=23% Similarity=0.381 Sum_probs=85.4
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcccC-CceEEechhHHHHHHHHHh
Q 026653 134 SRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNW-DPFIYVPNGIGTILGIVQL 212 (235)
Q Consensus 134 ~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~~~-d~~i~~~N~~g~~l~~~ql 212 (235)
.....+|..|+++++++|.+|.++++|+.|+||+|+.+..|++++.+||.+|+.||+..+ |..+...|.+|+.+..+++
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi 83 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYI 83 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999887 8888899999999999999
Q ss_pred hheeEecCCCC
Q 026653 213 ALYFNYKETSG 223 (235)
Q Consensus 213 ~l~~~y~~~~~ 223 (235)
..|+.|.++|+
T Consensus 84 ~~f~~ya~~k~ 94 (243)
T KOG1623|consen 84 SIFLYYAPKKK 94 (243)
T ss_pred HHHheecCchh
Confidence 99999998876
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=4.1e-12 Score=91.71 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=77.1
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcccCCceEEechhHHHHHHHHHhhh
Q 026653 135 RQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLAL 214 (235)
Q Consensus 135 ~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l~~~ql~l 214 (235)
..+++|++|..++..+| +||.-+++|+||++++++.+++.....+.+|+.||++++|.++...|.+++.++.+-+..
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~ 80 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFY 80 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHH
Confidence 36789999999999988 799999999999999999999999999999999999999999999999999999988777
Q ss_pred eeEecCC
Q 026653 215 YFNYKET 221 (235)
Q Consensus 215 ~~~y~~~ 221 (235)
...|..|
T Consensus 81 kI~~~~k 87 (89)
T COG4095 81 KIKYILK 87 (89)
T ss_pred HHHHHHh
Confidence 6666543
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=8.8e-12 Score=90.03 Aligned_cols=86 Identities=19% Similarity=0.352 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHH
Q 026653 11 TVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQL 90 (235)
Q Consensus 11 ~~~~~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~ 90 (235)
+...++.|..|+..+...| +||..+++|+|+++++|+.+|+.....+++|+.|| .+.+ +.|+...|.++..++.
T Consensus 2 ~~~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~-~lPii~aN~i~~il~l 75 (89)
T COG4095 2 DFFIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIN-DLPIIIANIISFILSL 75 (89)
T ss_pred cchhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHc-cCcchhHHHHHHHHHH
Confidence 3467889999998888776 99999999999999999999999999999999999 6775 4899999999999999
Q ss_pred HHHhhhhhcccc
Q 026653 91 VYIILFITYTEK 102 (235)
Q Consensus 91 ~y~~~~~~y~~~ 102 (235)
.-++...+|..+
T Consensus 76 iIl~~kI~~~~k 87 (89)
T COG4095 76 IILFYKIKYILK 87 (89)
T ss_pred HHHHHHHHHHHh
Confidence 998888877533
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.76 E-value=1.8e-07 Score=80.06 Aligned_cols=188 Identities=12% Similarity=0.087 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHh--------cCCcccCCceEEEee----c
Q 026653 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWY--------GTPLVSADNILVTTV----N 82 (235)
Q Consensus 15 ~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~Y--------G~~~l~~~~~~i~~~----N 82 (235)
.++|+...+.. ..+-+||+++.+|+||++++|+..+..-..+...|..| . ..++ .+.-.. |
T Consensus 5 ~~lG~~~~~~~---~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~---~~~~-~~~~~~~v~~e 77 (220)
T TIGR00951 5 QILGWGYVAAW---SISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWS---ITNE-FPLSSPGVTQN 77 (220)
T ss_pred HHHHHHHHHHH---HHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchh---hhhc-cccccCCCcHH
Confidence 44555554444 44569999999999999999999999999999999999 4 2222 222211 2
Q ss_pred hhhhhHHHHHH-----hhhhhcccchhHH-H-HHHHH-HHHHHHHHHhhhhheeeecCcchhhhhhhhHHHHHHHHhhhh
Q 026653 83 SIGAAFQLVYI-----ILFITYTEKDKKV-R-MLGLL-LAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASP 154 (235)
Q Consensus 83 ~~g~~l~~~y~-----~~~~~y~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sP 154 (235)
-+-..++...+ .-+.+|.+..+|+ + ..+.. ....+..+...........+.+....++.+...+++. +-
T Consensus 78 dl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~i---ky 154 (220)
T TIGR00951 78 DVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLV---KY 154 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH---HH
Confidence 33222222221 2222333222222 1 11111 1111111111111111123344455555555555554 55
Q ss_pred hhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcc-cCCceEEechhHHHHHHHHHh
Q 026653 155 LFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM-NWDPFIYVPNGIGTILGIVQL 212 (235)
Q Consensus 155 l~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~-~~d~~i~~~N~~g~~l~~~ql 212 (235)
+||++.-.|+||+++.|.......+.++..-..-... .+|...+.-..+++.+..+-+
T Consensus 155 iPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~ 213 (220)
T TIGR00951 155 FPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFA 213 (220)
T ss_pred hHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998888887666555553 367777777777777766543
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.03 E-value=1.1e-05 Score=54.88 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCC
Q 026653 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD 74 (235)
Q Consensus 15 ~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~ 74 (235)
+++|+++.+.. ..+.+||+++.+|+||++++|...+.....+..+|+.|. .+.++
T Consensus 3 ~~~g~i~~~~~---~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~ 57 (61)
T PF04193_consen 3 NILGIISIVLW---IISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNY 57 (61)
T ss_pred HHHHHHHHHHH---HHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcC
Confidence 34555555544 555699999999999999999999999999999999999 55544
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.99 E-value=1.5e-05 Score=54.19 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=47.9
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcccCCc
Q 026653 137 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDP 195 (235)
Q Consensus 137 ~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~~~d~ 195 (235)
+.+|+++.++.... .+||+.+.+|+|+++++++........++.+|+.|.+..++.
T Consensus 3 ~~~g~i~~~~~~~~---~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWIIS---FLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHH---HHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45666666665554 489999999999999999999999999999999999988764
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.78 E-value=0.00034 Score=58.71 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHHHHHh
Q 026653 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYII 94 (235)
Q Consensus 15 ~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~~y~~ 94 (235)
..+|+.-...++.. -+||+.+|+.+||++++|...+..-+++-..-+.|. .+++..+.-.--..=+.++.+-+.
T Consensus 32 klLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g~pFss~gE~~fLl~Q~vili 105 (230)
T KOG3211|consen 32 KLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSGYPFSSYGEYPFLLLQAVILI 105 (230)
T ss_pred hhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcCCCchhHHHHHHHHHHHHHHH
Confidence 34455444444444 489999999999999999999999999999999999 555533333333333555555544
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHhhhhheeeecCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccchhh
Q 026653 95 LFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYL 174 (235)
Q Consensus 95 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~ 174 (235)
.++.+=+ .++.....+..- .+.+.... ........++-...+...-+.-.|-+.|+..-.|+|++...++..
T Consensus 106 ~~if~f~--~~~~~~v~~l~~---~~~v~~~~---~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it 177 (230)
T KOG3211|consen 106 LCIFHFS--GQTVTVVQFLGY---IALVVSVL---ASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLIT 177 (230)
T ss_pred HHHHHhc--cceeehhhHHHH---HHHHHHHH---HHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHH
Confidence 4443222 111111101100 00011000 112223444444444444444578899999999999999999999
Q ss_pred HHHHHHhHHHHHhhhcc-cCCceEEechhHHHHHHHHHhhheeEecCCC
Q 026653 175 SLSTFLMSTSFLAYGIM-NWDPFIYVPNGIGTILGIVQLALYFNYKETS 222 (235)
Q Consensus 175 ~~~~~~n~~lW~~Yg~~-~~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~ 222 (235)
...++-.|.--..+..- ++|.-+...-++...++.+-..=..+|++++
T Consensus 178 ~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 178 VFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred HHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 99999999999999986 4788777766666666665555555666554
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=97.15 E-value=0.0082 Score=52.65 Aligned_cols=199 Identities=19% Similarity=0.138 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHHHHHhhhh
Q 026653 18 GIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFI 97 (235)
Q Consensus 18 g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~~y~~~~~ 97 (235)
..+|.+.+.+-..+-+||+.+..|+||.+++|+.+.+.-......=+.|. .+.+. .++...-..=..++..-+.+..
T Consensus 10 ~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~~-~~~~~~~~~yy~~~d~~l~~q~ 86 (260)
T KOG2913|consen 10 TILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQPL-GSTLKVQAVYYTLADSVLFVQC 86 (260)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhccc-chhHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555699999999999999999999998888888888888 34432 2111111111122222233333
Q ss_pred hcccchhH---------HHH-HH----HH---------------HHHHHHHHHh------hhhhe-eeecCc-chhhhhh
Q 026653 98 TYTEKDKK---------VRM-LG----LL---------------LAVIGIFSII------VAVSL-QIVNPF-SRQMFVG 140 (235)
Q Consensus 98 ~y~~~~~~---------~~~-~~----~~---------------~~~~~~~~~~------~~~~~-~~~~~~-~~~~~lG 140 (235)
.|.+++.+ .+. .+ .. .......+.+ .+... .....+ ...+.+|
T Consensus 87 ~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 166 (260)
T KOG2913|consen 87 LYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLG 166 (260)
T ss_pred HhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhcchH
Confidence 33332222 100 00 00 0000000000 00000 000011 2334555
Q ss_pred h-hHHHHHHHHhhhhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcc---cCCceEEechhHHHHHHHHHhhhee
Q 026653 141 L-LSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM---NWDPFIYVPNGIGTILGIVQLALYF 216 (235)
Q Consensus 141 ~-~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~---~~d~~i~~~N~~g~~l~~~ql~l~~ 216 (235)
. ++.+.+.+-.++++||+..-.|.|+.+++++.++..+...+ +.|+.- ..|..=..=..-...+.+.-..=++
T Consensus 167 ~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n---~~y~~s~~~~~n~~w~~~~~~~~~~D~~~~~q~~ 243 (260)
T KOG2913|consen 167 AILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN---TTYILSSYLVTNLPWLVDSKGTIYLDIFIFLQFF 243 (260)
T ss_pred HHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccc---cccccccccccCCcccccCCcchhHHHHHHHHHH
Confidence 5 44566677788999999999999999999987776666555 356554 1111111111222334444445556
Q ss_pred EecCCC
Q 026653 217 NYKETS 222 (235)
Q Consensus 217 ~y~~~~ 222 (235)
.|++.+
T Consensus 244 ~~~~~~ 249 (260)
T KOG2913|consen 244 NYRASK 249 (260)
T ss_pred Hhhccc
Confidence 666555
No 12
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.72 E-value=0.069 Score=52.06 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHH-HHHHHHHHHHHhcCCcccCCceEEEeechhhhhH
Q 026653 10 LTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYV-YALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 88 (235)
Q Consensus 10 ~~~~~~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~-~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l 88 (235)
-..+...+|++|-+.-..-| +-|...-.|+| +++-|.-|+ ..+.++.+-+.|| ++..| .+++....+|.++
T Consensus 6 ~~~~~~~~G~~~q~~F~~rf---~~QW~~sek~~--~s~~p~~FW~~Sl~g~~~l~~y~--~~~~~-~~~~~~q~~~~~i 77 (608)
T PRK01021 6 LVLWLYPLGLFANLFFGSAF---CIQWFLSKKRK--YSYVPKIFWILSSIGAVLMICHG--FIQSQ-FPIALLHSFNLII 77 (608)
T ss_pred chHHHHHHHHHHHHHHHHHH---HHHHHHHHhcC--CccCchHHHHHHHHHHHHHHHHH--HHhcC-CcEEEecccceEE
Confidence 34566778888876554443 44444433333 344455555 6888999999999 56644 5677777777665
Q ss_pred HHHHHhhhhhcccchhHHHHH-HHH--HHHHHH--HHHhhhhheeee---------c----CcchhhhhhhhHHHHHHHH
Q 026653 89 QLVYIILFITYTEKDKKVRML-GLL--LAVIGI--FSIIVAVSLQIV---------N----PFSRQMFVGLLSCAALISM 150 (235)
Q Consensus 89 ~~~y~~~~~~y~~~~~~~~~~-~~~--~~~~~~--~~~~~~~~~~~~---------~----~~~~~~~lG~~~~~~si~~ 150 (235)
..=.+.+-. +++...+.. ..+ ...... +++.+|...+.+ . .+..-..+|++|.++-..-
T Consensus 78 y~rNl~l~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~R 154 (608)
T PRK01021 78 YFRNLNIAS---SRPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLR 154 (608)
T ss_pred Eeehhhhcc---cccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHH
Confidence 332222222 122222221 111 111111 122222221111 1 1112235566665543333
Q ss_pred hhhhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcccCCceEEechhHHHHHHHHHhhheeEecCCCCCCCCCCc
Q 026653 151 FASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSGEESRDPL 230 (235)
Q Consensus 151 ~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~~~~~~~~~ 230 (235)
| +-| |-.-+++.-+.+|..-...++.++.+=+.|++.++|...+..+.+|.+.-.--+ +.++.++++++-.+|+
T Consensus 155 f---~~Q-w~~se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl--~li~~~~~~~~~~~~k 228 (608)
T PRK01021 155 F---FIQ-WFYLEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANL--RIAYKEARRKPFSNTS 228 (608)
T ss_pred H---HHH-HHHHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHH--HHHHhhcccccccCCe
Confidence 3 222 222244555678999999999999999999999999999999999998666554 4445555555544443
No 13
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.08 E-value=0.0097 Score=50.95 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=43.9
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhh
Q 026653 136 QMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAY 188 (235)
Q Consensus 136 ~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Y 188 (235)
.+.+|+...+.....+ +||+.+..|+||++++|+.......++...|..|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4567777777766655 8999999999999999999999999999999999
No 14
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=94.86 E-value=0.029 Score=32.75 Aligned_cols=27 Identities=33% Similarity=0.263 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHhcCcCCccchhHHHHH
Q 026653 31 SPVPTFRRIIRNHSTEEFSGLPYVYAL 57 (235)
Q Consensus 31 Sp~p~i~~i~k~ks~~~~s~~p~~~~~ 57 (235)
+-+||+.+.+|+||++++|+..+.+..
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 468999999999999999877665443
No 15
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=93.86 E-value=0.018 Score=44.48 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=54.6
Q ss_pred cCcccccchhhHHHHHHhHHHHHhhhccc--CCceEEechhHHHHHHHHHhhheeEecCCCCCC
Q 026653 164 TKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYKETSGEE 225 (235)
Q Consensus 164 tks~~~~~~~~~~~~~~n~~lW~~Yg~~~--~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~~~~ 225 (235)
+|..|.++..+..+.++.+.+|.-|++.+ +|+.++..|.+-...+..|+.=+..|...++++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~ 102 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKE 102 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 58999999999999999999999999987 688888889999999999998888877655544
No 16
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.53 E-value=0.062 Score=31.30 Aligned_cols=28 Identities=29% Similarity=0.110 Sum_probs=23.3
Q ss_pred hhhhhhhhhhhcCcccccchhhHHHHHH
Q 026653 153 SPLFIINLVIQTKSVEFMPFYLSLSTFL 180 (235)
Q Consensus 153 sPl~~i~~vi~tks~~~~~~~~~~~~~~ 180 (235)
+-+||+.+.+|+|+++++++.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4579999999999999999887765544
No 17
>PHA02246 hypothetical protein
Probab=91.55 E-value=6.5 Score=31.95 Aligned_cols=165 Identities=17% Similarity=0.186 Sum_probs=88.0
Q ss_pred HHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCC--ceEEEeechhhhhHHHHHHhhhhhcccch
Q 026653 26 FGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD--NILVTTVNSIGAAFQLVYIILFITYTEKD 103 (235)
Q Consensus 26 ~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~--~~~i~~~N~~g~~l~~~y~~~~~~y~~~~ 103 (235)
+..-..-+|+...+.|.|+++++| -.|+-....+.+--.|- .+..+ .+.+ .+-+.-+.++.+.+.+-- |++++
T Consensus 14 ilit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyN--lL~T~~~~fqi-~svg~nl~lgivcLlv~~-~rkkd 88 (192)
T PHA02246 14 ILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYN--LLLTDASVFQI-VSVGLNLTLGIVCLLVAS-YRKKD 88 (192)
T ss_pred HHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHH--HHhcCCceEEE-eeeehhhhhhhhheeeeh-hhccc
Confidence 344445689999999999999987 45666667777888888 45433 3433 333444556665554432 22111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhheeeecCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccchhhHHHHHHhHH
Q 026653 104 KKVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMST 183 (235)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~ 183 (235)
. .......++.++ ++. ..+..+..+.+ |+..-+ .+..+|+.+-+|||++|+.+...++.-..+-.
T Consensus 89 --~-f~~~fiiifSLl---lfl---l~~~~evtQtV---at~tIi---LaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~ 153 (192)
T PHA02246 89 --Y-FSIPFIIVFSLL---LFL---LSDFTALTQTV---ATITII---LAYVTQITTFYKTKSAEGTNRFLFLIIGLGLA 153 (192)
T ss_pred --c-ccchHHHHHHHH---HHH---HhhhHHHHHHH---HHHHHH---HHHHHHHHHHhhhcccCCCChhHHHHHHHHHH
Confidence 1 001111111111 111 11222233333 333333 34479999999999999999877754444332
Q ss_pred HHHhhhcccCC--ceEEec---hhHHHHHHHHH
Q 026653 184 SFLAYGIMNWD--PFIYVP---NGIGTILGIVQ 211 (235)
Q Consensus 184 lW~~Yg~~~~d--~~i~~~---N~~g~~l~~~q 211 (235)
+ ........+ .++.+. |.+=.+.+-.|
T Consensus 154 ~-L~~~m~Lthv~~hIiiTEf~N~iLiLiCy~q 185 (192)
T PHA02246 154 S-LIVSMVLTHTYVHIIATEFVNFVLILICYLQ 185 (192)
T ss_pred H-HHHHHhhhCCcceeeHHHHHHHHHHHHHHHH
Confidence 2 233333333 445544 55555555444
No 18
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=91.24 E-value=0.052 Score=41.95 Aligned_cols=62 Identities=24% Similarity=0.258 Sum_probs=53.7
Q ss_pred hcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHHHHHhhhhhcccchh
Q 026653 42 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDK 104 (235)
Q Consensus 42 ~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~~y~~~~~~y~~~~~ 104 (235)
+|..+.+|..+-...++-+.+|+.|++ .+++.|..++.+|.+-...+.+++.=++.|....+
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 588999999999999999999999996 56677788999999999999999987777754443
No 19
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=0.11 Score=39.33 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=56.5
Q ss_pred hccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHHHHHhhhhhcccc
Q 026653 30 VSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEK 102 (235)
Q Consensus 30 ~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~~y~~~~~~y~~~ 102 (235)
.+++.++ .|..|.+|...........++|..|++ .+++.|+.++.+|.+-...+.+++.=.+.|...
T Consensus 36 ~AglaD~-----arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~ 102 (118)
T KOG1589|consen 36 IAGLADL-----ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQQQ 102 (118)
T ss_pred eecHHhh-----cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554 678899999999999999999999996 566788889999999999999999988888433
No 20
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=89.80 E-value=4.1 Score=33.18 Aligned_cols=150 Identities=8% Similarity=0.076 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHHHH
Q 026653 13 LKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVY 92 (235)
Q Consensus 13 ~~~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~~y 92 (235)
..+++|.+|.+..+.-| ..|+-+. ........|.++...- .+.+. .+-+....++..-
T Consensus 4 ~aQ~~g~ia~~l~~~sf-----------~~k~~~~----l~~~~~~~~~~~~ihf--~LLGa-----~taa~~~~ls~~R 61 (163)
T PF10688_consen 4 LAQILGFIAFLLGILSF-----------QQKDDRR----LLLLQAISCLLFAIHF--ALLGA-----WTAALSMLLSAVR 61 (163)
T ss_pred HHHHHHHHHHHHHHHHH-----------HcccHHH----HHHHHHHHHHHHHHHH--HHhCh-----HHHHHHHHHHHHH
Confidence 34566777766665443 1122112 2344455555665555 34433 2456667777777
Q ss_pred HhhhhhcccchhHHHHHHHHHHHHHHHHHhhhhheeeecCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccch
Q 026653 93 IILFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPF 172 (235)
Q Consensus 93 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~ 172 (235)
..+..++++ +. ............+ . .+-+...+.++.+|++...... .. .++..
T Consensus 62 ~~~s~~~~~---~~-v~~~Fi~~~~~~~-----~---~~~~g~~~~l~~~as~~~t~a~----------f~---~~~~~- 115 (163)
T PF10688_consen 62 NFVSIRTRS---RW-VMAVFIALSLVMG-----L---FTWQGWIELLPYAASVLGTIAL----------FM---LDGIK- 115 (163)
T ss_pred HHHHHHhCC---HH-HHHHHHHHHHHHH-----H---HHHhhHHHHHHHHHHHHHHHHH----------Hh---cCchh-
Confidence 777666543 11 1111111111111 1 1233456777777766554422 11 12222
Q ss_pred hhHHHHHHhHHHHHhhhcccCCceEEechhHHHHHHHHH
Q 026653 173 YLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQ 211 (235)
Q Consensus 173 ~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l~~~q 211 (235)
+=....+++.+|..|++..++++...-|..........
T Consensus 116 -mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 116 -MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 22457899999999999999998888888877766654
No 21
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=87.52 E-value=1.2 Score=39.14 Aligned_cols=59 Identities=15% Similarity=-0.005 Sum_probs=45.3
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcccCCc
Q 026653 134 SRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDP 195 (235)
Q Consensus 134 ~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~~~d~ 195 (235)
+....+|.++.++....+ .||+.+..|+|+.+++|+...+...+..+.=..|..+.+-.
T Consensus 7 ~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~ 65 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLG 65 (260)
T ss_pred HHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccc
Confidence 345555555555555444 79999999999999999999998888888888888777543
No 22
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.30 E-value=0.21 Score=37.87 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=50.7
Q ss_pred cCcccccchhhHHHHHHhHHHHHhhhccc--CCceEEechhHHHHHHHHHhhheeEecC
Q 026653 164 TKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYKE 220 (235)
Q Consensus 164 tks~~~~~~~~~~~~~~n~~lW~~Yg~~~--~d~~i~~~N~~g~~l~~~ql~l~~~y~~ 220 (235)
.|..|.+|....++-+..++.|+-|.+.+ +|+.++..|.+=.+.+..|+.=.+.|..
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~ 101 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQ 101 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999999999987 7999999999999999999998888854
No 23
>PHA02246 hypothetical protein
Probab=81.63 E-value=16 Score=29.70 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHH
Q 026653 27 GLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCL 61 (235)
Q Consensus 27 ~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~ 61 (235)
...+.-+||+.+-+|+|+.|+.|..-|+....+-.
T Consensus 119 tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~ 153 (192)
T PHA02246 119 TIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLA 153 (192)
T ss_pred HHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHH
Confidence 33445699999999999999999888877655533
No 24
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=73.78 E-value=2.3 Score=29.95 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=36.3
Q ss_pred hcCcccccchhhHHHHHHhHHHHHhhhcccCCceEEechhHHHHH
Q 026653 163 QTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTIL 207 (235)
Q Consensus 163 ~tks~~~~~~~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l 207 (235)
+++..+.+|..-...+.+.+.+=+.||+.++|...+....+|...
T Consensus 21 Ek~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 21 EKAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFI 65 (72)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHH
Confidence 344445679889999999999999999999999777767777654
No 25
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=72.47 E-value=5.5 Score=33.86 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=53.6
Q ss_pred HhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHHHHHhhhhhcc
Q 026653 29 FVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYT 100 (235)
Q Consensus 29 ~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~~y~~~~~~y~ 100 (235)
..|=++|+..-+|+|++|..+.......+..|..=+.+. ....+++.+...-++..+++-.-..-..+|.
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~ 223 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYW 223 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 356689999999999999999999999999999999999 5666767666666666666555444444443
No 26
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=68.22 E-value=7.9 Score=28.64 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=44.0
Q ss_pred chhhHHHHHHhHHHHHhhhcccCCceEEechhHHHHHHHHHhhheeEecCCCCCCCCCCc
Q 026653 171 PFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSGEESRDPL 230 (235)
Q Consensus 171 ~~~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~~~~~~~~~ 230 (235)
...|.+...+..++=.++..+.+|.-+..--..|.+.++....++=.+.+|+++..||.+
T Consensus 34 K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~~~ 93 (93)
T PF06946_consen 34 KWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGEDDK 93 (93)
T ss_pred chhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcCCC
Confidence 455566666666666677778877755554566888999999998888888888888753
No 27
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=63.44 E-value=2.6 Score=29.01 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=1.7
Q ss_pred HHHHHhhheeEecCCCCCC----CCCCcccc
Q 026653 207 LGIVQLALYFNYKETSGEE----SRDPLIVS 233 (235)
Q Consensus 207 l~~~ql~l~~~y~~~~~~~----~~~~~~~~ 233 (235)
+..+-++++.+|+-++++| ++||+...
T Consensus 23 l~ailLIlf~iyR~rkkdEGSY~l~e~K~s~ 53 (64)
T PF01034_consen 23 LFAILLILFLIYRMRKKDEGSYDLDEPKPSN 53 (64)
T ss_dssp --------------S------SS--S-----
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCCccc
Confidence 4455677888898888887 88887643
No 28
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=60.24 E-value=41 Score=30.36 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=18.1
Q ss_pred hccHHHHHHHHHhcCcCCccc
Q 026653 30 VSPVPTFRRIIRNHSTEEFSG 50 (235)
Q Consensus 30 ~Sp~p~i~~i~k~ks~~~~s~ 50 (235)
.|-.||++-=+|+||+.++|+
T Consensus 137 ISfYPqii~N~RrKSv~gLnf 157 (372)
T KOG3145|consen 137 ISFYPQIILNWRRKSVVGLNF 157 (372)
T ss_pred eeechHHHhhhhhcceecccc
Confidence 456899999999999998875
No 29
>COG3952 Predicted membrane protein [Function unknown]
Probab=59.36 E-value=6.9 Score=29.62 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=48.0
Q ss_pred hhhcCcccccchhhHHHHHHhHHHHHhhhcccCCceEEechhHHHHHHHHHhhhee
Q 026653 161 VIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYF 216 (235)
Q Consensus 161 vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l~~~ql~l~~ 216 (235)
..+.++.+.+|.+-.-.+.+++.+-+.|.+-++|..=+..|+.|...++.-+-+..
T Consensus 47 ~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ 102 (113)
T COG3952 47 ASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLII 102 (113)
T ss_pred HHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHH
Confidence 35778888899999999999999999999999998777889999988877765544
No 30
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=56.31 E-value=28 Score=32.72 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCccc-CCceEEEeechhhhhHHHHHHh
Q 026653 19 IAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVS-ADNILVTTVNSIGAAFQLVYII 94 (235)
Q Consensus 19 ~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~-~~~~~i~~~N~~g~~l~~~y~~ 94 (235)
++..+-++.=|++-=-++.-++++||.+++|....+.-++...+=++|= +. +..+.|.+++++|++++++=+.
T Consensus 304 ~vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~~ts~lil~~~gig~~ie~WKv~ 377 (438)
T PF05602_consen 304 VVSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDNETSWLILVPSGIGLLIEAWKVT 377 (438)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeCCCcEEeehHhHhHHhHhheeee
Confidence 3445556666777778999999999999999888877777777777776 33 3446799999999999886443
No 31
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=55.25 E-value=26 Score=24.71 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhH
Q 026653 33 VPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 88 (235)
Q Consensus 33 ~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l 88 (235)
+-|.....|+|. ..+|..-......++.+-+.|| ...+| ...+....+|.+.
T Consensus 14 ~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~--i~r~D-pV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYA--IIRKD-PVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHH--HHHcC-hHHHHHHhcChHH
Confidence 455555444443 3344445557899999999999 56655 4444445555444
No 32
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=51.98 E-value=1.3e+02 Score=29.23 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=109.2
Q ss_pred HHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHHHHHhhhhh---
Q 026653 22 NIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFIT--- 98 (235)
Q Consensus 22 ~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~~y~~~~~~--- 98 (235)
.+-++.=|++-=.++--+.++||-+++|.-..+..++++.+=..|=+ =.+.++.+.++-++|+.+.++=+---++
T Consensus 326 ~lH~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYll--DneTs~mVlvs~gvG~~IE~WKi~K~m~v~i 403 (592)
T KOG2489|consen 326 ILHSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLL--DNETSFMVLVSVGVGLLIELWKIKKAMKVEI 403 (592)
T ss_pred HHHHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheee--cCCccEEEEEeccceeeeeeeecceEEEEEE
Confidence 33344445555567777889999999999999999999999999982 2234577888999999887654321111
Q ss_pred --------------------cccchhHH--H-H---HHHHHHHHHHHHHhhhhheeeecCcchhhhhhhhHHHHHHHHhh
Q 026653 99 --------------------YTEKDKKV--R-M---LGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFA 152 (235)
Q Consensus 99 --------------------y~~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~ 152 (235)
|+.++.+. + . ...++.-+++.. .+|..+..+...-...++-.+.+.+-..-|.
T Consensus 404 d~~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~-aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi 482 (592)
T KOG2489|consen 404 DWSGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGG-AVYSLLYVEHKSWYSWVLNSLYNGVYAFGFI 482 (592)
T ss_pred ecccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhcccccHHHHHHHHHHhHHHHHHHH
Confidence 11111111 1 1 111222222221 1234444444555677887777777667777
Q ss_pred hhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcc
Q 026653 153 SPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM 191 (235)
Q Consensus 153 sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~ 191 (235)
--+||+---.|=||+..+|-.+..-=++|.+.==++++.
T Consensus 483 ~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFV 521 (592)
T KOG2489|consen 483 FMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFV 521 (592)
T ss_pred HhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998888888655455444
No 33
>PRK10746 putative transport protein YifK; Provisional
Probab=51.53 E-value=63 Score=30.34 Aligned_cols=30 Identities=10% Similarity=-0.187 Sum_probs=15.3
Q ss_pred cchhhhhhhhHHHHHHHHhhhhhhhhhhhh
Q 026653 133 FSRQMFVGLLSCAALISMFASPLFIINLVI 162 (235)
Q Consensus 133 ~~~~~~lG~~~~~~si~~~~sPl~~i~~vi 162 (235)
++.-+.+-.++.....+.|..+.-...+-.
T Consensus 357 ~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r 386 (461)
T PRK10746 357 QRVFVYVYSASVLPGMVPWFVILISQLRFR 386 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555556667666654433333
No 34
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=51.19 E-value=2.8e+02 Score=28.08 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCcCCc
Q 026653 19 IAGNIFAFGLFVSPVPTFRRIIRNHSTEEF 48 (235)
Q Consensus 19 ~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~ 48 (235)
.+|...+..++ +|++....+++..++-
T Consensus 221 ilg~~lsa~~l---lP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 221 ILGVGLSAFLL---LPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHHHH---HHHHHHHHhCCCccCC
Confidence 35555554444 7999999988887765
No 35
>COG3952 Predicted membrane protein [Function unknown]
Probab=43.46 E-value=1.1e+02 Score=23.24 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=51.1
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhh
Q 026653 7 YQALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGA 86 (235)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~ 86 (235)
+-.........|..|-.+-..-| +-|.... ++++...++..-.-+.+++..+-+.|. +-++|.. -+..|+.|+
T Consensus 19 ~~~~~l~W~LiG~~g~~lFt~Rf---~VQw~~s-e~a~rsv~P~~FW~~sllGg~l~L~Yf--i~~~DpV-~Vl~~~~gl 91 (113)
T COG3952 19 LPKAFLSWKLIGFSGQLLFTGRF---VVQWLAS-EHANRSVIPVLFWYFSLLGGLLLLSYF--IRRQDPV-FVLGQACGL 91 (113)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HhcCCCcchHHHHHHHHHhhHHHHHHH--HHhcchH-HHHHHhhhH
Confidence 33344466777887776544443 2333222 233333444333347888999999999 5666633 345788888
Q ss_pred hHHHHHHhhhhhc
Q 026653 87 AFQLVYIILFITY 99 (235)
Q Consensus 87 ~l~~~y~~~~~~y 99 (235)
..++..+.+.++-
T Consensus 92 F~~l~nL~L~~ke 104 (113)
T COG3952 92 FIYLRNLWLIIKE 104 (113)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776666544
No 36
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=41.14 E-value=12 Score=30.33 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHHHHHH
Q 026653 54 VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYI 93 (235)
Q Consensus 54 ~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~~~y~ 93 (235)
....+++.+|+.|+ .+.++ ++....|......+.+.+
T Consensus 118 ~~~l~~~~~w~~~n--~~igS-~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGS-WGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcC-HHHHHHHHHHHHHHHHHH
Confidence 45889999999999 56655 556666777666655443
No 37
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=39.92 E-value=2.4e+02 Score=28.02 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHH
Q 026653 10 LTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQ 89 (235)
Q Consensus 10 ~~~~~~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~ 89 (235)
.+.+..++|.+|-+.-.+-| +-|.....|+|. ..++..-....+.++.+-+.|+ ....| .-.+..+++|++..
T Consensus 136 ~~~~~~~~G~~~q~~f~~Rf---~~Qw~~se~~~~-s~~p~~FW~~s~~G~~~~l~Y~--i~r~d-pv~i~g~~~g~~~y 208 (608)
T PRK01021 136 ANLSWHLIGCIGLTIFSLRF---FIQWFYLEYNNQ-SALPALFWKASLLGGSLALLYF--IRTGD-PVNILCYGCGLFPS 208 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCC-CCCcHHHHHHHHHhHHHHHHHH--HHhCC-ceEEEccccchhHH
Confidence 35667788888876555444 455544444443 3344444557889999999999 56666 44667899999987
Q ss_pred HHHHhhhhh
Q 026653 90 LVYIILFIT 98 (235)
Q Consensus 90 ~~y~~~~~~ 98 (235)
.=.+....+
T Consensus 209 ~rnl~li~~ 217 (608)
T PRK01021 209 LANLRIAYK 217 (608)
T ss_pred HHHHHHHHh
Confidence 766654443
No 38
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.11 E-value=70 Score=26.99 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=40.6
Q ss_pred hhhhhhhhhhhhcCcccccch----hhHHHHHHhHHHHHhhhcccCCceEEechhHHHHHHHHHhhhe
Q 026653 152 ASPLFIINLVIQTKSVEFMPF----YLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALY 215 (235)
Q Consensus 152 ~sPl~~i~~vi~tks~~~~~~----~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l~~~ql~l~ 215 (235)
.+=|||++...|++.+|.+-. .+.+.=.+.+.-| +|-...+|.+ ..+.++.+++|..+|
T Consensus 129 VaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~W-I~r~~~e~~~----~~iai~agiVQT~ly 191 (212)
T KOG3106|consen 129 VAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANW-IYRYVTEDFW----DPIAIVAGIVQTVLY 191 (212)
T ss_pred HHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH-HHHHHhhccc----cchHHHHHHHHHHHH
Confidence 355899999999999998853 3444456667777 5666667733 334555667787765
No 39
>PRK10580 proY putative proline-specific permease; Provisional
Probab=32.42 E-value=2.4e+02 Score=26.21 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=17.3
Q ss_pred cchhhhhhhhHHHHHHHHhhhhhhhhhhhh
Q 026653 133 FSRQMFVGLLSCAALISMFASPLFIINLVI 162 (235)
Q Consensus 133 ~~~~~~lG~~~~~~si~~~~sPl~~i~~vi 162 (235)
++.-+.+.-+++......|..+.....+-.
T Consensus 354 ~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr 383 (457)
T PRK10580 354 ENVFLVIASLATFATVWVWIMILLSQIAFR 383 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666677777665444433
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=31.27 E-value=2.1e+02 Score=24.60 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=43.2
Q ss_pred ecCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccchhhHHHHHHhH
Q 026653 130 VNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMS 182 (235)
Q Consensus 130 ~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~ 182 (235)
.|.+...+.+|..|.+.+..|-+-.=-.+++.+.+.|.++.+.-++..+++|-
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL 178 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNL 178 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 46677788999999999988877767778888999998888877777777764
No 41
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=29.04 E-value=91 Score=17.29 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.9
Q ss_pred HhccHHHHHHHHHhcC
Q 026653 29 FVSPVPTFRRIIRNHS 44 (235)
Q Consensus 29 ~~Sp~p~i~~i~k~ks 44 (235)
..+.+|++..++|+|.
T Consensus 9 la~~LP~lISWIK~kr 24 (26)
T PF01372_consen 9 LATGLPTLISWIKNKR 24 (26)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHh
Confidence 3457999999999874
No 42
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=27.78 E-value=6e+02 Score=25.07 Aligned_cols=40 Identities=15% Similarity=0.510 Sum_probs=30.2
Q ss_pred HhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCC
Q 026653 29 FVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD 74 (235)
Q Consensus 29 ~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~ 74 (235)
+..|+..+-+++-.=+-++++|.|++..++ ++.+| ++-+|
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f----~lfFG--mM~gD 364 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIFF----PLFFG--MMLGD 364 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHHH----HHHHH--HHHHh
Confidence 356778888888888889999999987654 67777 55557
No 43
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=26.35 E-value=2.1e+02 Score=27.14 Aligned_cols=146 Identities=16% Similarity=0.281 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHH--hcCcCCccchhHHHHHHHHHHHHHhcCCcccCCc----eEEEee
Q 026653 9 ALTVLKDAVGIAGNIFAFGLFVSPVPTFRR-IIR--NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADN----ILVTTV 81 (235)
Q Consensus 9 ~~~~~~~~~g~~~~~~t~~~~~Sp~p~i~~-i~k--~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~----~~i~~~ 81 (235)
|+..+.-.+...+.-.+..+++.-.|+-.+ +.+ -|++|-++.+|++........+-.-+= .+..+. .-.-.-
T Consensus 257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD-~l~~~~ls~t~~rkif 335 (466)
T KOG2532|consen 257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSD-RLTFRILSETTVRKIF 335 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccCchHhHHHHH
Confidence 455666667777777777777777888655 333 567888899999998887776655441 121110 012345
Q ss_pred chhhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHh---hhhheeeecCcchhhhhhhhHHHHHHHHhhhhhh
Q 026653 82 NSIGAAFQLVYIILFITYTEKDKKVRMLGLLLAVIGIFSII---VAVSLQIVNPFSRQMFVGLLSCAALISMFASPLF 156 (235)
Q Consensus 82 N~~g~~l~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~ 156 (235)
|.++.....+.+..-- |.++.++......+....++.+.. .+.....+.++-...++|..-.+.++..+.+|+-
T Consensus 336 n~i~~~~~ai~l~~l~-~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~ 412 (466)
T KOG2532|consen 336 NTIAFGGPAVFLLVLA-FTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLL 412 (466)
T ss_pred HhHHHHHHHHHHHeee-ecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777776666544 334333321111111111111100 0111111134445667777777777777777775
No 44
>PRK10580 proY putative proline-specific permease; Provisional
Probab=24.95 E-value=3e+02 Score=25.53 Aligned_cols=30 Identities=3% Similarity=-0.093 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Q 026653 14 KDAVGIAGNIFAFGLFVSPVPTFRRIIRNH 43 (235)
Q Consensus 14 ~~~~g~~~~~~t~~~~~Sp~p~i~~i~k~k 43 (235)
.+.+..++.......+..+.....+.+|++
T Consensus 357 ~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~ 386 (457)
T PRK10580 357 FLVIASLATFATVWVWIMILLSQIAFRRRL 386 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666653
No 45
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.32 E-value=65 Score=25.01 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=50.3
Q ss_pred hhhhhhhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhccc--CCceEEechhHHHHHHHHHhhheeEec
Q 026653 151 FASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYK 219 (235)
Q Consensus 151 ~~sPl~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~~--~d~~i~~~N~~g~~l~~~ql~l~~~y~ 219 (235)
++-|+..+.+ -+|+-+-++-.|..+.++-+.+..-|+... +|+.++.-.......+.+|..=|..|.
T Consensus 36 wGlpiAal~D--mkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~~~ 104 (132)
T KOG1590|consen 36 WGLPIAALVD--MKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNETAQLAQGSRFLNYN 104 (132)
T ss_pred ccchHHHHHh--ccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4456665555 356777889999999999999999888876 688877777777777788876665543
No 46
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=23.33 E-value=2.6e+02 Score=26.21 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=12.4
Q ss_pred HHHHHHHHhhheeEecCCCCCCCCCCc
Q 026653 204 GTILGIVQLALYFNYKETSGEESRDPL 230 (235)
Q Consensus 204 g~~l~~~ql~l~~~y~~~~~~~~~~~~ 230 (235)
|+.+-..-+.+|..++++++++.-||+
T Consensus 421 ~~~~~~~g~~~y~~~~~~~~~~~~~~~ 447 (473)
T TIGR00905 421 GFILYAPGIIFYGRARKERGKHVFNKK 447 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 443334444555555544443344444
No 47
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=23.32 E-value=78 Score=20.30 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=14.2
Q ss_pred HHHHHHHhhheeEecCCCCCCCCCCcc
Q 026653 205 TILGIVQLALYFNYKETSGEESRDPLI 231 (235)
Q Consensus 205 ~~l~~~ql~l~~~y~~~~~~~~~~~~~ 231 (235)
+++++.-..+|--+.+. .+++|||-.
T Consensus 17 lL~~~TgyaiYtaFGpp-Sk~LrDPFe 42 (46)
T PRK13183 17 ILLALTGFGIYTAFGPP-SKELDDPFD 42 (46)
T ss_pred HHHHHhhheeeeccCCc-ccccCCchh
Confidence 34444444444444433 567999954
No 48
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=22.93 E-value=1.5e+02 Score=25.89 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=38.9
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhc------CcccccchhhH--HH-HHHhHHHHHhhhcccCCceEEech
Q 026653 136 QMFVGLLSCAALISMFASPLFIINLVIQT------KSVEFMPFYLS--LS-TFLMSTSFLAYGIMNWDPFIYVPN 201 (235)
Q Consensus 136 ~~~lG~~~~~~si~~~~sPl~~i~~vi~t------ks~~~~~~~~~--~~-~~~n~~lW~~Yg~~~~d~~i~~~N 201 (235)
.+++|.+.++++=++|++-+-=+.-+.++ .+.+++++... .. .+.+.+.+..|.+..+|.+-+-||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 47889999999999888744322222222 23455543332 22 233445667888888776655555
No 49
>PRK11387 S-methylmethionine transporter; Provisional
Probab=21.68 E-value=3.4e+02 Score=25.39 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHh
Q 026653 16 AVGIAGNIFAFGLFVSPVPTFRRIIRN 42 (235)
Q Consensus 16 ~~g~~~~~~t~~~~~Sp~p~i~~i~k~ 42 (235)
.+..+++...+..+..+.-...+.+|+
T Consensus 366 ~l~~l~~~~~li~y~~~~~~~i~lr~~ 392 (471)
T PRK11387 366 ALSAISGFAVVAVWLSICASHFMFRRR 392 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555554444444443
No 50
>PF14184 YrvL: Regulatory protein YrvL
Probab=21.29 E-value=4.1e+02 Score=20.79 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=50.9
Q ss_pred eeeecccChHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHhc-CcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEE
Q 026653 2 ILTITYQALTVLKDAVGIAGNIFAFGLFVSPV-PTFRRIIRNH-STEEFSGLPYVYALLNCLITMWYGTPLVSADNILVT 79 (235)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~~~~~~t~~~~~Sp~-p~i~~i~k~k-s~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~ 79 (235)
++|++++|.....-.......+ +..+-|+ ..+.+..++. ........-+...-.-+..|..|-.+.+.+ .+-
T Consensus 31 L~Gi~Y~S~~~llLF~li~~~l---g~~~e~~~k~l~~~l~~~~~~~~~~~~l~~~id~~~t~~~i~~aD~~m~---sI~ 104 (132)
T PF14184_consen 31 LLGIEYESVGSLLLFFLIIFVL---GLPFELFEKVLLKALLFLRMSRRLFILLAFIIDFLFTWITIYTADELME---SIS 104 (132)
T ss_pred HhCcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHhc---cee
Confidence 4788898888777666554443 2222233 2333334433 233333333444445555666665322222 366
Q ss_pred eechhhhhHHHHHHhhhhhcccchh
Q 026653 80 TVNSIGAAFQLVYIILFITYTEKDK 104 (235)
Q Consensus 80 ~~N~~g~~l~~~y~~~~~~y~~~~~ 104 (235)
.+|.--.+++......-....++|+
T Consensus 105 is~~~e~i~al~~~~~~~~~~~~~~ 129 (132)
T PF14184_consen 105 ISTLSEIIFALLFALLDKCFDKKKK 129 (132)
T ss_pred eCcHHHHHHHHHHHHHHHHhcchhh
Confidence 7777777777666665555544433
No 51
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=21.16 E-value=1e+02 Score=19.50 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhhheeEecCCCCCCCCCCcc
Q 026653 202 GIGTILGIVQLALYFNYKETSGEESRDPLI 231 (235)
Q Consensus 202 ~~g~~l~~~ql~l~~~y~~~~~~~~~~~~~ 231 (235)
+.++++++.-..+|.-+.+ .++++|||-.
T Consensus 11 i~~~lv~~Tgy~iYtaFGp-pSk~LrDPfe 39 (43)
T PF02468_consen 11 ISCLLVSITGYAIYTAFGP-PSKELRDPFE 39 (43)
T ss_pred HHHHHHHHHhhhhhheeCC-CccccCCccc
Confidence 3445555555556655543 3457999853
No 52
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=21.00 E-value=2e+02 Score=22.68 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=10.8
Q ss_pred chhhhhhhhHHHHHHH
Q 026653 134 SRQMFVGLLSCAALIS 149 (235)
Q Consensus 134 ~~~~~lG~~~~~~si~ 149 (235)
+.++..|.+|..++=.
T Consensus 42 ~~~N~~G~~Ga~~a~~ 57 (171)
T PF13491_consen 42 EVHNLMGILGAYLADF 57 (171)
T ss_pred CCcCCCChHhHHHHHh
Confidence 5567888887765544
Done!