Query 026653
Match_columns 235
No_of_seqs 152 out of 1550
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 31.7 1E+02 0.0036 26.6 6.8 28 137-164 351-378 (445)
2 1q1s_A Large T antigen; import 15.1 59 0.002 17.4 0.9 11 219-229 16-26 (26)
3 3bkd_A Transmembrane domain of 11.0 36 0.0012 18.0 -0.7 14 193-206 2-15 (26)
4 3dh4_A Sodium/glucose cotransp 11.0 7.5E+02 0.026 22.2 7.9 23 193-215 446-468 (530)
5 3qrx_B Melittin; calcium-bindi 8.6 2.2E+02 0.0076 14.9 1.8 15 30-44 10-24 (26)
6 2nr1_A NR1 M2, M2; receptor, s 8.1 89 0.003 16.9 0.2 13 180-192 9-21 (27)
7 2ljb_A M2 protein, BM2 protein 7.2 76 0.0026 18.1 -0.4 15 192-206 5-19 (35)
8 4djk_A Probable glutamate/gamm 6.7 1E+03 0.035 20.5 6.8 29 15-43 368-396 (511)
9 3tlw_A GLR4197 protein, GLIC; 6.3 1.1E+03 0.036 19.4 9.5 22 136-157 256-277 (321)
10 4gc0_A D-xylose-proton symport 6.3 4.2E+02 0.014 22.5 3.8 15 213-227 458-472 (491)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.73 E-value=1e+02 Score=26.61 Aligned_cols=28 Identities=11% Similarity=-0.023 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhc
Q 026653 137 MFVGLLSCAALISMFASPLFIINLVIQT 164 (235)
Q Consensus 137 ~~lG~~~~~~si~~~~sPl~~i~~vi~t 164 (235)
+.+.-+++......|..+.....+..|+
T Consensus 351 ~~l~~~~~~~~~~~y~~~~~~~~~~r~~ 378 (445)
T 3l1l_A 351 GLVSSVSVIFTLVPYLYTCAALLLLGHG 378 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333344444445555444444443333
No 2
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=15.13 E-value=59 Score=17.39 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=5.6
Q ss_pred cCCCCCCCCCC
Q 026653 219 KETSGEESRDP 229 (235)
Q Consensus 219 ~~~~~~~~~~~ 229 (235)
|++++++-|||
T Consensus 16 PPKkKrk~~dp 26 (26)
T 1q1s_A 16 PPKKKRKVEXX 26 (26)
T ss_pred CCccccccCCC
Confidence 44555555554
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=10.99 E-value=36 Score=18.04 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=11.0
Q ss_pred CCceEEechhHHHH
Q 026653 193 WDPFIYVPNGIGTI 206 (235)
Q Consensus 193 ~d~~i~~~N~~g~~ 206 (235)
+|..++.+|.+|++
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 57777888998874
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=10.95 E-value=7.5e+02 Score=22.20 Aligned_cols=23 Identities=9% Similarity=-0.070 Sum_probs=13.6
Q ss_pred CCceEEechhHHHHHHHHHhhhe
Q 026653 193 WDPFIYVPNGIGTILGIVQLALY 215 (235)
Q Consensus 193 ~d~~i~~~N~~g~~l~~~ql~l~ 215 (235)
.|..-.-++.+++..+.+-..+.
T Consensus 446 ~~~~~~~~~~~~~~~~~i~~v~v 468 (530)
T 3dh4_A 446 LSMPFMDQMLYTLLFTMVVIAFT 468 (530)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHH
Confidence 34443456777887777665443
No 5
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=8.57 E-value=2.2e+02 Score=14.92 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=12.1
Q ss_pred hccHHHHHHHHHhcC
Q 026653 30 VSPVPTFRRIIRNHS 44 (235)
Q Consensus 30 ~Sp~p~i~~i~k~ks 44 (235)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 346899999999885
No 6
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=8.05 E-value=89 Score=16.87 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=9.4
Q ss_pred HhHHHHHhhhccc
Q 026653 180 LMSTSFLAYGIMN 192 (235)
Q Consensus 180 ~n~~lW~~Yg~~~ 192 (235)
+.+.+|+.+|.+.
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 4567898888764
No 7
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=7.16 E-value=76 Score=18.08 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.5
Q ss_pred cCCceEEechhHHHH
Q 026653 192 NWDPFIYVPNGIGTI 206 (235)
Q Consensus 192 ~~d~~i~~~N~~g~~ 206 (235)
.+|..++.+|.+|++
T Consensus 5 SsDplviaA~IigiL 19 (35)
T 2ljb_A 5 SSDPLVVAASIIGIL 19 (35)
T ss_dssp -CCTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 468888888999874
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=6.70 E-value=1e+03 Score=20.49 Aligned_cols=29 Identities=3% Similarity=-0.050 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhc
Q 026653 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNH 43 (235)
Q Consensus 15 ~~~g~~~~~~t~~~~~Sp~p~i~~i~k~k 43 (235)
+.+..+++......|..+.....+.+|++
T Consensus 368 ~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 396 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLFIGYIVLVLKH 396 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333444444455555555555555554
No 9
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=6.33 E-value=1.1e+03 Score=19.38 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=11.3
Q ss_pred hhhhhhhHHHHHHHHhhhhhhh
Q 026653 136 QMFVGLLSCAALISMFASPLFI 157 (235)
Q Consensus 136 ~~~lG~~~~~~si~~~~sPl~~ 157 (235)
...+|..-.++-+++++|=+..
T Consensus 256 vp~i~~~~~~~~~~v~~sll~~ 277 (321)
T 3tlw_A 256 MTYTGAIIFMIYLFYFVAVIEV 277 (321)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665555555555554443
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=6.30 E-value=4.2e+02 Score=22.55 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=8.3
Q ss_pred hheeEecCCCCCCCC
Q 026653 213 ALYFNYKETSGEESR 227 (235)
Q Consensus 213 ~l~~~y~~~~~~~~~ 227 (235)
..++..|+.|.+.+|
T Consensus 458 ~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 458 FMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHCCCCTTCCHH
T ss_pred HHHheecCCCCCCHH
Confidence 344556766665544
Done!