Query 026653
Match_columns 235
No_of_seqs 152 out of 1550
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 18:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026653.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026653hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 23.4 47 0.0035 17.9 3.3 30 137-171 5-34 (37)
2 d1xioa_ f.13.1.1 (A:) Sensory 11.3 2.7E+02 0.02 20.2 9.3 35 156-191 148-182 (226)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 8.2 53 0.0039 21.0 0.8 16 214-229 39-54 (91)
4 d1q90a3 f.23.23.1 (A:248-292) 7.4 73 0.0053 17.9 1.0 17 155-171 17-33 (45)
5 d3cx5c1 f.32.1.1 (C:262-385) M 7.1 3.3E+02 0.024 18.0 5.1 24 129-152 80-103 (124)
6 d1jfia_ a.22.1.3 (A:) Negative 4.9 3.2E+02 0.024 15.6 3.8 18 154-171 4-22 (66)
7 d1rkla_ f.23.30.1 (A:) Oligosa 4.0 1.2E+02 0.0088 15.7 0.5 19 201-219 8-26 (36)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 3.5 5.1E+02 0.037 15.8 4.0 33 131-163 62-94 (103)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 3.4 3.2E+02 0.023 13.3 1.9 12 86-97 12-23 (30)
10 d1ppjc1 f.32.1.1 (C:261-379) M 3.2 6.3E+02 0.046 16.3 5.6 29 129-157 80-110 (119)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.37 E-value=47 Score=17.93 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=18.2
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhcCcccccc
Q 026653 137 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMP 171 (235)
Q Consensus 137 ~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~~~~ 171 (235)
++-|+++-..++. +.++--|+|+|-.|...
T Consensus 5 Rv~gl~~F~~~v~-----laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 5 RVKWMIAFICLVM-----LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 4445544444433 56777788888877654
No 2
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=11.29 E-value=2.7e+02 Score=20.17 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=18.6
Q ss_pred hhhhhhhhcCcccccchhhHHHHHHhHHHHHhhhcc
Q 026653 156 FIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM 191 (235)
Q Consensus 156 ~~i~~vi~tks~~~~~~~~~~~~~~n~~lW~~Yg~~ 191 (235)
...++..++++.+ ....-.....+..++|..|.+.
T Consensus 148 ~~~~~~~~~~~~~-~~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 148 NPLRAKTRTQSSE-LANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp THHHHHHTTSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554432 2222233444556799999875
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.22 E-value=53 Score=21.02 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=8.0
Q ss_pred heeEecCCCCCCCCCC
Q 026653 214 LYFNYKETSGEESRDP 229 (235)
Q Consensus 214 l~~~y~~~~~~~~~~~ 229 (235)
..++|++++.++..+|
T Consensus 39 ~~~ryR~~~~~~~~~~ 54 (91)
T d1fftb2 39 FAWKYRASNKDAKYSP 54 (91)
T ss_dssp TTTTTTTSTTTCSSCC
T ss_pred hheeeeccCCccCCCC
Confidence 3355665555444444
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.41 E-value=73 Score=17.85 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=10.5
Q ss_pred hhhhhhhhhcCcccccc
Q 026653 155 LFIINLVIQTKSVEFMP 171 (235)
Q Consensus 155 l~~i~~vi~tks~~~~~ 171 (235)
+.|+--|+|+|..|..+
T Consensus 17 laQi~LVLKKKQfEKVQ 33 (45)
T d1q90a3 17 LTQVLLVLKKKQFEKVQ 33 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677777666543
No 5
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.11 E-value=3.3e+02 Score=18.01 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=18.5
Q ss_pred eecCcchhhhhhhhHHHHHHHHhh
Q 026653 129 IVNPFSRQMFVGLLSCAALISMFA 152 (235)
Q Consensus 129 ~~~~~~~~~~lG~~~~~~si~~~~ 152 (235)
.+..|..-..+|.++++.=.+.|.
T Consensus 80 ~~p~e~p~~~~gqi~s~~YF~~Fl 103 (124)
T d3cx5c1 80 ACHVEVPYVLMGQIATFIYFAYFL 103 (124)
T ss_dssp TSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHH
Confidence 456677788899999888777664
No 6
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.92 E-value=3.2e+02 Score=15.58 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=12.2
Q ss_pred hhhhhhhhhhc-Ccccccc
Q 026653 154 PLFIINLVIQT-KSVEFMP 171 (235)
Q Consensus 154 Pl~~i~~vi~t-ks~~~~~ 171 (235)
|+..+++++|. .+...++
T Consensus 4 P~srVkkimk~~~~~~~is 22 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVA 22 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBC
T ss_pred ChHHHHHHHhcCCcccccc
Confidence 88889999984 3333443
No 7
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.04 E-value=1.2e+02 Score=15.73 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHhhheeEec
Q 026653 201 NGIGTILGIVQLALYFNYK 219 (235)
Q Consensus 201 N~~g~~l~~~ql~l~~~y~ 219 (235)
|.+.+.+++..+.+..+|.
T Consensus 8 n~~~i~fgi~mmtliviyh 26 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYH 26 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHh
Confidence 8888888888888877774
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.53 E-value=5.1e+02 Score=15.82 Aligned_cols=33 Identities=12% Similarity=-0.068 Sum_probs=20.6
Q ss_pred cCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Q 026653 131 NPFSRQMFVGLLSCAALISMFASPLFIINLVIQ 163 (235)
Q Consensus 131 ~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~ 163 (235)
+.....+++..+-.+..+..++.+...+-+.+.
T Consensus 62 P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~ 94 (103)
T d1r3jc_ 62 PVTLWGRCVAVVVMVAGITSFGLVTAALATWFV 94 (103)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666677777777777766655443
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.41 E-value=3.2e+02 Score=13.27 Aligned_cols=12 Identities=17% Similarity=0.575 Sum_probs=4.7
Q ss_pred hhHHHHHHhhhh
Q 026653 86 AAFQLVYIILFI 97 (235)
Q Consensus 86 ~~l~~~y~~~~~ 97 (235)
+++++++..+|+
T Consensus 12 c~i~lfffaiff 23 (30)
T d2axtt1 12 CIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 333344433333
No 10
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.19 E-value=6.3e+02 Score=16.32 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=19.6
Q ss_pred eecCcchhhhhhhhHHHHHHHHh--hhhhhh
Q 026653 129 IVNPFSRQMFVGLLSCAALISMF--ASPLFI 157 (235)
Q Consensus 129 ~~~~~~~~~~lG~~~~~~si~~~--~sPl~~ 157 (235)
.+..|..-..+|.++++.=.+.+ ..|+-.
T Consensus 80 ~~p~e~p~~~~gqi~tv~YF~~flillP~~~ 110 (119)
T d1ppjc1 80 GQPVEHPYITIGQLASVLYFLLILVLMPTAG 110 (119)
T ss_dssp TSCSCTTHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889998888876554 345543
Done!