BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026654
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKT0|THF1_ARATH Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis
thaliana GN=THF1 PE=1 SV=1
Length = 300
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/233 (78%), Positives = 211/233 (90%), Gaps = 1/233 (0%)
Query: 1 MISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVT 60
+ +DVPP V+ETK FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPVFALGFVT
Sbjct: 60 VTADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVT 118
Query: 61 VYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG 120
VYD+LMEGYPS++DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG
Sbjct: 119 VYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEG 178
Query: 121 EVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDR 180
++E +LKDIA RA K FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDR
Sbjct: 179 DIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDR 238
Query: 181 DLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLYS 233
DLDVYRNLLSKL+QAKELLKEYV+REKKK+ ER + QKANE I KCLG+ LY+
Sbjct: 239 DLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291
>sp|Q7XAB8|THF1_SOLTU Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum
GN=THF1 PE=2 SV=1
Length = 293
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/227 (78%), Positives = 201/227 (88%), Gaps = 1/227 (0%)
Query: 7 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 66
PTVA+TK+ FL YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFALGFVTVYD+LM
Sbjct: 66 PTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFVTVYDQLM 125
Query: 67 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLL 126
EGYPSEEDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F SKEGE+E +
Sbjct: 126 EGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIF 185
Query: 127 KDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYR 186
KDIA+RA K F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+SVDRDLDVYR
Sbjct: 186 KDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYR 245
Query: 187 NLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLYS 233
NLLSKL+QAKELLKEYV+REKKKR ER E QKANE + KCLG+Y Y+
Sbjct: 246 NLLSKLVQAKELLKEYVEREKKKRGER-ETQKANETVTKCLGDYQYA 291
>sp|Q84PB7|THF1_ORYSJ Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp.
japonica GN=THF1 PE=2 SV=1
Length = 287
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/225 (82%), Positives = 206/225 (91%)
Query: 4 DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYD 63
DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQYD VFALGFVTVYD
Sbjct: 56 DVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYD 115
Query: 64 RLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVE 123
+LMEGYPS EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q +SLVEF SK+GE+E
Sbjct: 116 QLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIE 175
Query: 124 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLD 183
+LKDI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA LN+NKRSVDRDLD
Sbjct: 176 AILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLD 235
Query: 184 VYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLG 228
VYRN+LSKL+QAKELLKEYV+REKKKREER+E K+NEA+ K G
Sbjct: 236 VYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTKFDG 280
>sp|B0C3M8|THF1_ACAM1 Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1
PE=3 SV=1
Length = 247
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 135/216 (62%), Gaps = 16/216 (7%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV++TK F ++ RP+ S+Y V++EL+V+ HL+R ++YDP+FALG T +DR M+
Sbjct: 6 TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMD 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EV 122
GY E D++AIF A A + DP Q + D Q+L E A+ ++A ++++ ++ E+
Sbjct: 66 GYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDEL 125
Query: 123 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNK 175
+ L++IA+ F YSR FA+GLF LLEL+ N T+ L +C VLN+++
Sbjct: 126 QWQLRNIAQNPK----FKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISE 181
Query: 176 RSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKRE 211
+ +DL++YR L K+ Q ++ + + ++ +KK+RE
Sbjct: 182 SKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRRE 217
>sp|Q116P5|THF1_TRIEI Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1
PE=3 SV=1
Length = 239
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 129/216 (59%), Gaps = 9/216 (4%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV++TK F + RPI SIYN V++EL+V+ HL+ Y Y+P +ALG VT +DR M+
Sbjct: 6 TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP--SKEGEVEGL 125
GY +ED+ +IF A I +EDP +YR DA+ LE+ A +AS ++ + SK +
Sbjct: 66 GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125
Query: 126 LKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSV 178
L+D S F YSR FA+GLF LLE+ + L+K+C LN+ + +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185
Query: 179 DRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERT 214
+D+D+Y + L ++ QA+ +++ + +KKRE+R+
Sbjct: 186 LKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221
>sp|B8HQ62|THF1_CYAP4 Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=thf1 PE=3 SV=1
Length = 236
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 137/228 (60%), Gaps = 14/228 (6%)
Query: 6 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 65
P TV++TK F + RPI SIY V++EL+V+ HL+R +T+ YDPVFALG VT ++R
Sbjct: 4 PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERF 63
Query: 66 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 125
M+GY D+ +IF A A + DP+Q + DAQ+L RGQ+ SL+++ S + G
Sbjct: 64 MQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGD 123
Query: 126 LKDIAERA-SGKGNFSYSRFFAVGLFRLLELANATEP----------TVLEKLCAVLNVN 174
+ RA + F YSR FAVGLF LLE A EP VL+++ V+++
Sbjct: 124 EQQNRLRAIASNPTFKYSRLFAVGLFTLLEQA---EPELGKDEARLLQVLQQVGEVMHLP 180
Query: 175 KRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEA 222
+ +DL+ YR+ L K+ QA++ L++ V E+K+R++ P ++ E+
Sbjct: 181 VEKMQKDLEQYRSNLEKMTQARKTLEDIVAAERKRRQQNAAPDRSPES 228
>sp|Q8YZ41|THF1_NOSS1 Protein thf1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=thf1
PE=3 SV=1
Length = 233
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 134/221 (60%), Gaps = 17/221 (7%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR ME
Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 121
GY E D+E+IF A A++++P++YR DA++L+ A+ + LV + S ++ +
Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDAD 125
Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVN 174
++ L+ IA NF YSR FA+GLF LLE +N L+ + A L+++
Sbjct: 126 LQAQLQAIA----NNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLS 181
Query: 175 KRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTE 215
+DL++YR+ L K+ QA ++ + + ++KKRE+R +
Sbjct: 182 DDKFSKDLELYRSNLDKMTQALAVMADMLTADRKKREQRQQ 222
>sp|B2J353|THF1_NOSP7 Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
GN=thf1 PE=3 SV=1
Length = 235
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 137/227 (60%), Gaps = 21/227 (9%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR M+
Sbjct: 6 TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQ 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGE 121
GY E D+E+IF A A+++DP+ YR DA++L+ A+G L+ + ++ +
Sbjct: 66 GYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDAD 125
Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA---------TEPTVLEKLCAVLN 172
++ L+ IA NF Y+R FA+G+F LLE ++ TE L+ + A L+
Sbjct: 126 LQAQLQAIA----NNPNFKYNRLFAIGVFSLLEQSDPELVKDEKQLTE--ALKAIAAGLH 179
Query: 173 VNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKA 219
V+ +++DL++YR+ L K+ QA ++ + + ++KKRE+R + A
Sbjct: 180 VSDDKLNKDLELYRSNLDKMAQALVVMADMLSADRKKREQRKQQSTA 226
>sp|Q3M4B2|THF1_ANAVT Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=thf1 PE=3 SV=1
Length = 233
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 135/221 (61%), Gaps = 17/221 (7%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR M+
Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 121
GY E D+E+IF A A++++P++YR DA++L+ A+ + LV + S ++ +
Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDAD 125
Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVN 174
++ L+ IA NF YSR FA+GLF LLE +N L+ + A L+++
Sbjct: 126 LQAQLQAIA----SNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLS 181
Query: 175 KRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTE 215
+ +DL++YR+ L K+ QA ++ + + ++KKRE+R +
Sbjct: 182 DDKLSKDLELYRSNLDKMTQALAVMADMLTADRKKREQRQQ 222
>sp|Q5N664|THF1_SYNP6 Protein thf1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=thf1 PE=3 SV=2
Length = 254
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 7 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 66
PTV+++K F Y RPI +Y V++EL+V+ HL+ ++ YDP+FALG VT +D M
Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64
Query: 67 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVE 123
Y E +F A A++++PEQYR DA + E RG + ++ ++ ++ G
Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAP 124
Query: 124 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELAN---ATEPTVLEKLCAVL----NVNKR 176
L++ + +G+ F YSR FA+GLF LLE A +P L+ + ++
Sbjct: 125 ELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSD 184
Query: 177 SVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREER 213
+ +DLD+YR+ L K+ QA+ ++E + +++KRE+R
Sbjct: 185 KLQKDLDLYRSNLEKMEQARITMEEAIQADRRKREQR 221
>sp|Q31MY4|THF1_SYNE7 Protein thf1 OS=Synechococcus elongatus (strain PCC 7942) GN=thf1
PE=3 SV=2
Length = 254
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 7 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 66
PTV+++K F Y RPI +Y V++EL+V+ HL+ ++ YDP+FALG VT +D M
Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64
Query: 67 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVE 123
Y E +F A A++++PEQYR DA + E RG + ++ ++ ++ G
Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAP 124
Query: 124 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELAN---ATEPTVLEKLCAVL----NVNKR 176
L++ + +G+ F YSR FA+GLF LLE A +P L+ + ++
Sbjct: 125 ELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSD 184
Query: 177 SVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREER 213
+ +DLD+YR+ L K+ QA+ ++E + +++KRE+R
Sbjct: 185 KLQKDLDLYRSNLEKMEQARITMEEAIQADRRKREQR 221
>sp|B7K277|THF1_CYAP8 Protein thf1 OS=Cyanothece sp. (strain PCC 8801) GN=thf1 PE=3 SV=1
Length = 235
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 125/215 (58%), Gaps = 10/215 (4%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV++TK +F + RPI SIY ++EL+V+ HL+ ++YDP++ALG V + + M+
Sbjct: 6 TVSDTKRDFYNHHTRPINSIYRRFIEELLVEMHLLCVNIDFRYDPIYALGVVASFQQFMQ 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGE-VEG 124
GY EED+ +IF A A+ D E+YR +AQ L +G + S L+ ++ GE EG
Sbjct: 66 GYRPEEDKNSIFSALCQAVGGDGEKYRHEAQTLLNQVKGMSVSDLIAMGNSARTGEPGEG 125
Query: 125 LLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT-------EPTVLEKLCAVLNVNKRS 177
+L + + + F YSR FA+GL+ ++ +A +LC LN++
Sbjct: 126 MLYNTLQAIAKNPQFKYSRLFAIGLYTMVMEIDADLLKEQDKRNETFSQLCNGLNLSSDK 185
Query: 178 VDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREE 212
+ +DLD+YR+ + K+ Q ++++ ++ E+KKRE+
Sbjct: 186 LQKDLDLYRSNVDKMGQLLAVIEDALEAERKKREK 220
>sp|B7KI38|THF1_CYAP7 Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1
Length = 226
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 132/220 (60%), Gaps = 18/220 (8%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV+++K +F + RPI S+Y V++EL+V+ HL+ +QYDPV+ALG VT + R M+
Sbjct: 6 TVSDSKRDFYTKHTRPINSVYRRVVEELMVEMHLLSVNSDFQYDPVYALGVVTSFQRFMQ 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV-------EFPSKEG 120
GY + D+E+IF A ++ DP+QYR DA+++ E A+ +A L+ + S E
Sbjct: 66 GYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQLLFNLESASDSSSGEN 125
Query: 121 EVEGLLKDIAERASGKGNFSYSRFFAVGLFRLL-----ELANATEP--TVLEKLCAVLNV 173
++ L IA + Y+R FA+G++ +L E+ TE V++++ VL++
Sbjct: 126 QILQTLIGIA----NAPKYKYTRLFAIGIYTILAETDPEMLKNTEKREEVVKQIAKVLHL 181
Query: 174 NKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREER 213
+ + +DLD+YR+ L K+ Q +++E + ++KKRE++
Sbjct: 182 PEEKMQKDLDLYRSNLEKMDQLLTVIEEALQADRKKREQQ 221
>sp|Q7NKS7|THF1_GLOVI Protein thf1 OS=Gloeobacter violaceus (strain PCC 7421) GN=thf1
PE=3 SV=1
Length = 228
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 11/221 (4%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV+++K F Y RP+ SIY V+ EL+V+ HL+ + +++DP+FA G +T Y LME
Sbjct: 6 TVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALME 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV-EGLL 126
GY E R+AI +A TAL+ EQ DA + A A ++E + + E +G L
Sbjct: 66 GYTPVEQRDAILRALCTALELSYEQLHTDAAQWRAIAAELPAQEVLEVMAGKREAGDGRL 125
Query: 127 KDIAERASGKGN---FSYSRFFAVGLFRLLELAN----ATEPTVLEKL---CAVLNVNKR 176
K + + +G N F YSR F++GL +LE A +E LE+L C L ++
Sbjct: 126 KAMGDTLAGIANAERFKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDYN 185
Query: 177 SVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQ 217
V RDLD + ++L ++ ++KE++ E E++KREER Q
Sbjct: 186 RVKRDLDFFHSVLERIKRSKEVVDELSQTERRKREERAVSQ 226
>sp|Q8DJT8|THF1_THEEB Protein thf1 OS=Thermosynechococcus elongatus (strain BP-1) GN=thf1
PE=3 SV=1
Length = 222
Score = 130 bits (327), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 16/223 (7%)
Query: 6 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 65
P TV++TK F + RPI SIY ++EL+V+ HL+R ++Y P+FALG VT +D+
Sbjct: 4 PRTVSDTKRAFYAAHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQF 63
Query: 66 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 125
MEGY E DR+ IF A A + +P+Q + DA +++ + L E S G+
Sbjct: 64 MEGYQPEGDRDRIFHALCVAEEMNPQQLKEDAASWQQYQGRPLSQILDELNS--GQPSAP 121
Query: 126 LKDIAERASGKGNFSYSRFFAVGLFRLL-ELANATEPTV-----LEKLCAVLNVNKRSVD 179
L + +GK YSR AVGL+ L ELA E T+ L++L V+ + V
Sbjct: 122 LNSLNH--TGK----YSRLHAVGLYAFLQELAG--EVTIHLNETLDQLAPVIPLPIEKVK 173
Query: 180 RDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEA 222
RDL++YR+ L K+ QA+ L+KE V++E+K+R ++T A +A
Sbjct: 174 RDLELYRSNLDKINQARSLMKELVEQERKRRAQQTSAPPAVDA 216
>sp|B1XHY6|THF1_SYNP2 Protein thf1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=thf1 PE=3 SV=1
Length = 254
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 125/215 (58%), Gaps = 15/215 (6%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV++TK +F + RPI SI+ V++EL+V+ HL+ ++YDP +ALG VT ++R M+
Sbjct: 6 TVSDTKRDFYTHHTRPINSIFRRVVEELLVEMHLLSVNADFRYDPFYALGVVTSFERFMQ 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL-- 125
GY E D+ +IFQ+ A+ D +Y+ DA L E A+ + + L+E ++ EG
Sbjct: 66 GYRPEADKVSIFQSMCQAIGGDANRYKEDAMALVELAKRCSGTQLIECFRQDVPPEGAQE 125
Query: 126 LKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEK----------LCAVLNVNK 175
L + E + +F YSR FA+G++ L +EP +LE + A LN+ +
Sbjct: 126 LWEKIEAIAKNDHFKYSRLFAIGVYTFL---GESEPQLLEDTEKRDEMLTTVTAGLNLPE 182
Query: 176 RSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKR 210
+ +DLD+YR+ L K+ Q E+L++ + E+++R
Sbjct: 183 EKMKKDLDLYRSNLEKMNQVLEVLEDALAVERQRR 217
>sp|P0C1D1|THF1_SYNJB Protein thf1 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=thf1
PE=3 SV=1
Length = 239
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 14/232 (6%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
T++ TK F Y RPI ++Y V++EL+V+ HL T+ YDP FALG VT+YD LME
Sbjct: 6 TLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLME 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVE--GL 125
Y E REAIF A AL PE R +A+ L E ++ + E E G
Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMGSGDPRQRLDLLCLKPEAEDVGG 125
Query: 126 LKDIAERASGKGNFSYSRFFAVGLFRLLELANAT---EP-----TVLEKLCAVLNVNKRS 177
LK I ER + + ++YSR AVGL+ E+ + EP LE + + L +
Sbjct: 126 LKAILERMT-QPPYAYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTER 184
Query: 178 VDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGE 229
V +DL++YR+ L ++ QA+ +++E V ++++E R Q A + LG+
Sbjct: 185 VRKDLELYRSSLDRMKQARAVVEEMVKAARRQQERR---QSAASLPETSLGD 233
>sp|B1WNF0|THF1_CYAA5 Protein thf1 OS=Cyanothece sp. (strain ATCC 51142) GN=thf1 PE=3
SV=1
Length = 242
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 118/210 (56%), Gaps = 8/210 (3%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV++TK F + RPI SIY ++EL+V+ HL+ ++YDP++ALG VT ++R M+
Sbjct: 6 TVSDTKRKFYGYHTRPINSIYRRFVEELLVEMHLLSVNVDFKYDPIYALGVVTSFERFMQ 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 127
GY E D+ +IF A A+ + EQY +A+ L A+G + + E +EG +G+L
Sbjct: 66 GYSPESDKTSIFNALCQAVDGNSEQYHQEAEALINEAKGLSITEFKEKLGQEGG-DGILW 124
Query: 128 DIAERASGKGNFSYSRFFAVGLFRLL-----ELANATEP--TVLEKLCAVLNVNKRSVDR 180
+ F YSR F VGL+ LL +L + ++++ L + + +
Sbjct: 125 GTCGAIAQNPKFKYSRLFGVGLYTLLMEIDPDLVKEEDKRNQTIKEVSDALQFSSDKLQK 184
Query: 181 DLDVYRNLLSKLLQAKELLKEYVDREKKKR 210
DLD+YR+ L K+ Q ++++ ++ ++KKR
Sbjct: 185 DLDLYRSNLDKMQQLLTVIEDTLEADRKKR 214
>sp|Q2JSQ3|THF1_SYNJA Protein thf1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=thf1 PE=3
SV=1
Length = 239
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 116/218 (53%), Gaps = 15/218 (6%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
T++ TK F Y RPI + Y V++EL+V+ HL + YDP FALG VT+YD LME
Sbjct: 6 TLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLME 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARG----QTASSLVEFPSKEGEVE 123
Y E REAIF A AL PE R +A+ L E R Q + L P E E
Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMRSGDPVQRYNLLCLKP--EAEDV 123
Query: 124 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT---EP-----TVLEKLCAVLNVNK 175
G LK I +R + + ++YSR AVGL+ E + EP LE + L +
Sbjct: 124 GGLKAILQRMT-QPPYAYSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPFSP 182
Query: 176 RSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREER 213
V +DL++YR+ L +L QA+ +++E V ++++E R
Sbjct: 183 ERVKKDLELYRSNLDRLKQARAIVEEMVKAARRQQERR 220
>sp|P73956|THF1_SYNY3 Protein thf1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=thf1 PE=3 SV=1
Length = 240
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 118/214 (55%), Gaps = 8/214 (3%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV++ K F Y RPI SIY ++EL+V+ HL+ + YDP+FALG VT ++ M+
Sbjct: 6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE-FPSKEGEVEGLL 126
GY E AIF A + ++P+Q R DA+ + A + V S++ + LL
Sbjct: 66 GYQPAEQLPAIFNALCHGVDQNPDQVRQDAKNVAASAHHIGLDAWVTAAASEQASGDNLL 125
Query: 127 KDIAERASGKGNFSYSRFFAVGLFRLL-----ELANATEP--TVLEKLCAVLNVNKRSVD 179
+ + F YSR FA+GL+ LL E+ + E L +L +L+++ V
Sbjct: 126 LNTLTGIHQRHKFKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVV 185
Query: 180 RDLDVYRNLLSKLLQAKELLKEYVDREKKKREER 213
+DLD+YR+ L K+ Q ++L++ + E+KK+E++
Sbjct: 186 KDLDLYRSNLEKVDQLLKVLEDAAEAERKKKEKQ 219
>sp|Q7V7R3|THF1_PROMM Protein thf1 OS=Prochlorococcus marinus (strain MIT 9313) GN=thf1
PE=3 SV=1
Length = 243
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 10/214 (4%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
T+A++K F + IPS+Y EL+V+ HL+ +++ + D +FA+G V+D
Sbjct: 6 TIADSKRAFNHDFPHVIPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFDVFTS 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGL 125
GY E + +F A + DP R AQ+ E RG + + ++G+ E L
Sbjct: 66 GYRPEAHVKTLFDALCRSCGFDPNALRKQAQQTLESVRGHDLEEVQGWIQQQGKGAPEAL 125
Query: 126 LKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAV-------LNVNKRSV 178
K + A G F YSR AVGL LL A E + EKL + + +K V
Sbjct: 126 AKALRNTA-GSTTFHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVGFSKARV 184
Query: 179 DRDLDVYRNLLSKLLQAKELLKEYVDREKKKREE 212
++DL++Y++ L K+ QA EL ++ ++ E++KRE+
Sbjct: 185 EKDLNLYKSNLEKMAQAVELTEQILESERRKREQ 218
>sp|Q3AY05|THF1_SYNS9 Protein thf1 OS=Synechococcus sp. (strain CC9902) GN=thf1 PE=3 SV=1
Length = 215
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 111/218 (50%), Gaps = 22/218 (10%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
T+A++K F + + I +Y + EL+V+ HL+ ++ +++ P+FA+G TV+D
Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSA 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 127
GY EE + A ++ D +R ++++ + A+ ++ V+ +
Sbjct: 66 GYRPEEHITGLLDALCSSNGYDANTFRKESKRCIDAAKTES-------------VDAMDS 112
Query: 128 DIAERASGKGNFSYSRFFAVGLFRLLELA--NATEP--TVLEKLC----AVLNVNKRSVD 179
+A + G+G+ YSR A+G+ RL E A +A +P L K C LN V+
Sbjct: 113 HLAGQKLGEGSH-YSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKELSTALNFPAERVE 171
Query: 180 RDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQ 217
+DL ++ + ++ A EL++E + E++K+E R Q
Sbjct: 172 KDLSLFASNSERMSAAIELVQETIAAERRKKERRQAEQ 209
>sp|Q3AJN7|THF1_SYNSC Protein thf1 OS=Synechococcus sp. (strain CC9605) GN=thf1 PE=3 SV=1
Length = 215
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 22/218 (10%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
T+A++K F + + I +Y + EL+V+ HL+ ++ ++ + +F++G TV+D ++
Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFDTFIK 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 127
GY E +A+F+A ++ D + R L E A+G+ SL ++ S EG
Sbjct: 66 GYRPEAQTDALFRALCSSNGFDAAKLRKTYASLVEQAKGKDPESLKDWLSSHALKEG--- 122
Query: 128 DIAERASGKGNFSYSRFFAVGLFRLLE------LANATEPTVLE--KLCAVLNVNKRSVD 179
YSR AVGL LL+ + TE V + +L L + V+
Sbjct: 123 -----------SHYSRLMAVGLMSLLKAAAADATDSDTEAIVKQSKELAEGLGLPTDRVE 171
Query: 180 RDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQ 217
+DL ++ + ++ QA EL++E + EK+K+E R E Q
Sbjct: 172 KDLTLFGSNSERMDQAVELVEETIAAEKRKKERRLEEQ 209
>sp|Q7U6N6|THF1_SYNPX Protein thf1 OS=Synechococcus sp. (strain WH8102) GN=thf1 PE=3 SV=1
Length = 212
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 19/211 (9%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
T+A++K F + + I +Y + EL+V+ HL+ ++ T+Q + +FA+G TV++R +
Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFERFTQ 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 127
GY E A+ A ++ D EQ + AQ + A G + + + ++ +G
Sbjct: 66 GYRPMEHPAALLSALCSSNGFDDEQLKQAAQHCLQDAEGHSDDAFQSWLKEQSLSDGA-- 123
Query: 128 DIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVL-----EKLCAVLNVNKRSVDRDL 182
YSR AVGL LLE ++ KL L + V++DL
Sbjct: 124 ------------HYSRLMAVGLLALLEASSDESDASSLRQRAVKLSVDLGLPAERVEKDL 171
Query: 183 DVYRNLLSKLLQAKELLKEYVDREKKKREER 213
V+ + ++ QA EL++E + +++K+E+R
Sbjct: 172 TVFSSNSERMEQAVELMQETLAADRRKKEKR 202
>sp|A9BAB2|THF1_PROM4 Protein thf1 OS=Prochlorococcus marinus (strain MIT 9211) GN=thf1
PE=3 SV=1
Length = 221
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 115/221 (52%), Gaps = 18/221 (8%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV+E+K F K + +P++Y ++ ELIV+ +L++ + + D VFA+G +++ +
Sbjct: 6 TVSESKAIFHKEFPFVVPAVYRRLVDELIVELNLLKNQERFVADGVFAIGLTSIFLDFTK 65
Query: 68 GYPSEEDREAIFQAYITAL---KEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 124
GY E + + +A + EQ ++A+KL SL+ +++ E E
Sbjct: 66 GYKPENQKGILLEAICKCTGFSASNLEQIALEAKKLANGLNTNEIKSLITDNNRD-EKES 124
Query: 125 LLKDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRS 177
K I + N YSR A+G+++L+++ + ATE + L+ L K
Sbjct: 125 TYKLINK------NNHYSRIIAIGIYKLVDMQSNGFNKEEATENSYLD-LVNNFGYTKER 177
Query: 178 VDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQK 218
V++D+++Y++ L K+ +A EL++ + EK++ +ER K
Sbjct: 178 VEKDVNLYKSSLDKIEKALELIEMNIKDEKRRNKERVSRTK 218
>sp|Q46L45|THF1_PROMT Protein thf1 OS=Prochlorococcus marinus (strain NATL2A) GN=thf1
PE=3 SV=1
Length = 199
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 19/202 (9%)
Query: 5 VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDR 64
V T++++K +F K + IP+IY + EL+V+ HL+ +++ ++ D +F+ G V+ +
Sbjct: 3 VRATISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSK 62
Query: 65 LMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 124
GY E +F A +P + +++L A+ T L F SK
Sbjct: 63 FTSGYKPSEHATKLFDAICNCNGFNPTEINNSSEQLVSNAKSFTKEDLNSFLSKTNN--- 119
Query: 125 LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRS------- 177
KG YSR A+G+++L+ + E L +N +S
Sbjct: 120 ---------DNKGYDYYSRINAIGIYKLVSEMPLFKEVKEEDLNKEINDISKSLGYQYSR 170
Query: 178 VDRDLDVYRNLLSKLLQAKELL 199
V++D+ +Y++ + K+ QA E++
Sbjct: 171 VEKDISMYKSNIEKMKQALEII 192
>sp|A2C211|THF1_PROM1 Protein thf1 OS=Prochlorococcus marinus (strain NATL1A) GN=thf1
PE=3 SV=1
Length = 199
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 19/202 (9%)
Query: 5 VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDR 64
V T++++K +F K + IP+IY + EL+V+ HL+ +++ ++ D +F+ G V+ +
Sbjct: 3 VRATISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFCK 62
Query: 65 LMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 124
GY E +F A +P + +++L A+ T L F SK
Sbjct: 63 FTSGYKPSEHVTKLFDAICNCNGFNPTEINNSSEQLVSNAKSFTKEDLNSFLSKTNN--- 119
Query: 125 LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRS------- 177
KG YSR A+G+++L+ + E L +N +S
Sbjct: 120 ---------DNKGYDYYSRINAIGIYKLVSEMPLFKEVKEEDLNKEINDISKSLGYQYSR 170
Query: 178 VDRDLDVYRNLLSKLLQAKELL 199
V++D+ +Y++ + K+ QA E++
Sbjct: 171 VEKDISMYKSNIEKMKQALEII 192
>sp|Q7VC23|THF1_PROMA Protein thf1 OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=thf1 PE=3 SV=1
Length = 214
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 102/208 (49%), Gaps = 9/208 (4%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
T++++K F K + IP +Y VL E +V+ +L+ + ++ D +F+ G + ++R
Sbjct: 6 TISDSKGLFHKEFPYVIPPVYRKVLDEYLVELNLLSNQSNFKIDTIFSYGLIISFERFTV 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 127
GY + I ++ + D + + + +++ + ++ + E++ +
Sbjct: 66 GYEPDSHISKILESLCNSCNIDIKAIKEYSNNIKKLINEKGIKEIINILT--AEIKKSVG 123
Query: 128 DIA-ERASGKGNFSYSRFFAVGLFRLLELAN-----ATEPTVLEKLCAVLNVNKRSVDRD 181
IA SGK + YSR A+G++ L+ N + ++ + L +K V++D
Sbjct: 124 GIALSNQSGKDKY-YSRLHAIGIYELISNINEDKKEGDDKEIISECVEALGFSKDRVEKD 182
Query: 182 LDVYRNLLSKLLQAKELLKEYVDREKKK 209
++ Y+N + K+ + EL+K V+ K+K
Sbjct: 183 INQYKNSMEKIKEMMELIKLTVEETKRK 210
>sp|Q7V1W1|THF1_PROMP Protein thf1 OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=thf1 PE=3 SV=2
Length = 202
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 102/203 (50%), Gaps = 26/203 (12%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV+++K F + + IP +Y ++ E++V+ +L+ ++ + D +F +G + L +
Sbjct: 6 TVSDSKKLFHEQFPYVIPGLYKRIVDEMLVELNLLNHQNEFIQDDLFCVGLTETFKELTK 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 127
GY EE +F++ + +P++ + ++K E + ++ E+ LLK
Sbjct: 66 GYKPEEHLRVLFESLCNSSNFEPKKIKEASKKTLEVYKDKSLK----------EISILLK 115
Query: 128 DIAERASGKGNFSYSRFFAVGLFRLLELANATE---------PTVLEKLCAVLNVNKRSV 178
++ N SR +G++ L +ANAT+ ++ + LN++
Sbjct: 116 QKSD-----SNLYSSRILNLGIY--LIIANATDFKDIKDPEKNKIISDIINKLNLSFNKA 168
Query: 179 DRDLDVYRNLLSKLLQAKELLKE 201
++D+ +Y++ + K+ QAKELL+E
Sbjct: 169 EKDIGIYKSSILKMEQAKELLQE 191
>sp|Q31BD6|THF1_PROM9 Protein thf1 OS=Prochlorococcus marinus (strain MIT 9312) GN=thf1
PE=3 SV=2
Length = 201
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 112/209 (53%), Gaps = 22/209 (10%)
Query: 8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
TV+++K F + + IP +Y ++ E++V+ +L+ ++ ++ D +F +G + L +
Sbjct: 6 TVSDSKKLFHEEFPYVIPGLYKRIVDEILVELNLLNHQNEFKQDYLFCIGLTETFKELTK 65
Query: 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 127
GY E+ + +F++ + +A++++E ++ S EF K + +LK
Sbjct: 66 GYKPEKHLDLLFESLCIST-------NFEAKEIKEISK----ISQKEFSDKSSK--DILK 112
Query: 128 DIAERASGKGNFSYSRFFAVGLFRLL-------ELANATEPTVLEKLCAVLNVNKRSVDR 180
+ E+++ K SR +G++ L+ E + + ++ + L++++ ++
Sbjct: 113 LLKEKSNSK--LYPSRILNLGIYILISNSQDFKENNDIEKNKMISDIFEKLSLSRNKAEK 170
Query: 181 DLDVYRNLLSKLLQAKELLKEYVDREKKK 209
D+ +Y++ +SK+ QAKEL++E ++KKK
Sbjct: 171 DIGIYKSSISKMEQAKELIQEQRIKDKKK 199
>sp|E9Q557|DESP_MOUSE Desmoplakin OS=Mus musculus GN=Dsp PE=3 SV=1
Length = 2883
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 120 GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVD 179
EV LKD+ G + Y + GLF+ LE N L LC+V
Sbjct: 732 AEVLNQLKDMLANFRGSEKYCYLQNEIFGLFQKLENINGVSDGYLNSLCSV--------- 782
Query: 180 RDLDVYRNLLSKLLQAKELLKEYVDR 205
R LL +LQ +++LK Y R
Sbjct: 783 ------RALLQAILQTEDMLKVYEAR 802
>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
Length = 2871
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 120 GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVD 179
EV LKD+ G + Y + GLF+ LE N L LC V
Sbjct: 720 AEVLNQLKDMLANFRGSEKYCYLQNEVFGLFQKLENINGVTDGYLNSLCTV--------- 770
Query: 180 RDLDVYRNLLSKLLQAKELLKEYVDR 205
R LL +LQ +++LK Y R
Sbjct: 771 ------RALLQAILQTEDMLKVYEAR 790
>sp|Q5XJ34|KC15L_DANRE BTB/POZ domain-containing protein kctd15-like OS=Danio rerio
GN=kctd15l PE=1 SV=1
Length = 257
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 151 RLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 201
R+ L N TEP VL+ L +DRD +++R +LS L +K LL E
Sbjct: 55 RISRLFNGTEPIVLDSL-----KQHYFIDRDGEIFRYILSYLRTSKLLLPE 100
>sp|Q6P3P4|KCD15_XENTR BTB/POZ domain-containing protein kctd15 OS=Xenopus tropicalis
GN=kctd15 PE=2 SV=1
Length = 255
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 151 RLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 201
R+ L N TEP VL+ L +DRD +++R +LS L +K LL E
Sbjct: 55 RISRLFNGTEPIVLDSL-----KQHYFIDRDGEIFRYILSFLRTSKLLLPE 100
>sp|Q9VI75|PICA_DROME Phosphatidylinositol-binding clathrin assembly protein LAP
OS=Drosophila melanogaster GN=lap PE=1 SV=3
Length = 468
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 81/207 (39%), Gaps = 30/207 (14%)
Query: 19 LYKRPIPSIYNTVLQELIVQQHLMRY--KRTYQY----DPVFALGFV----TVYDRLMEG 68
L +R + + V + LI HLM Y +R QY + F L TV D M G
Sbjct: 65 LIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGM-G 123
Query: 69 YPSEE---DREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE---------FP 116
P D + Y L E YR A + RG+ SL P
Sbjct: 124 VPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLP 183
Query: 117 SKEGEVEGLLK---DIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNV 173
+ +++ LL+ + ++G N S+ F L RL N +LEK ++
Sbjct: 184 VLQAQLDALLEFDCQSNDLSNGVINMSFMLLFR-DLIRLFACYNDGIINLLEK---YFDM 239
Query: 174 NKRSVDRDLDVYRNLLSKLLQAKELLK 200
NK+ LD+Y+ L ++ + E LK
Sbjct: 240 NKKHARDALDLYKKFLVRMDRVGEFLK 266
>sp|Q6DCX3|KCD15_XENLA BTB/POZ domain-containing protein kctd15 OS=Xenopus laevis
GN=kctd15 PE=2 SV=1
Length = 255
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 151 RLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 201
R+ L N TEP VL+ L +DRD +++R +LS L +K LL E
Sbjct: 55 RISRLFNGTEPIVLDSL-----KQHYFIDRDGEIFRYILSFLRTSKLLLPE 100
>sp|B0TQK8|SLMA_SHEHH Nucleoid occlusion factor SlmA OS=Shewanella halifaxensis (strain
HAW-EB4) GN=slmA PE=3 SV=1
Length = 197
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 66 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 125
M P RE I Q T L+ P Q RI KL A+ FPSK EGL
Sbjct: 1 MAASPKINRREHILQCLATMLETSPGQ-RITTAKLAAEVGVSEAALYRHFPSKARMFEGL 59
Query: 126 LKDIAE 131
++ I E
Sbjct: 60 IEFIEE 65
>sp|B8CM26|SLMA_SHEPW Nucleoid occlusion factor SlmA OS=Shewanella piezotolerans (strain
WP3 / JCM 13877) GN=slmA PE=3 SV=1
Length = 197
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 66 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 125
M P RE I Q T L+ P Q RI KL A+ FPSK EGL
Sbjct: 1 MAASPKINRREHILQCLATMLETSPGQ-RITTAKLAAEVGVSEAALYRHFPSKARMFEGL 59
Query: 126 LKDIAE 131
++ I E
Sbjct: 60 IEFIEE 65
>sp|A8H9B3|SLMA_SHEPA Nucleoid occlusion factor SlmA OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=slmA PE=3 SV=1
Length = 197
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 66 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 125
M P RE I Q T L+ P Q RI KL A+ FPSK EGL
Sbjct: 1 MAASPKINRREHILQCLATMLETSPGQ-RITTAKLAAEVGVSEAALYRHFPSKARMFEGL 59
Query: 126 LKDIAE 131
++ I E
Sbjct: 60 IEFIEE 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,494,389
Number of Sequences: 539616
Number of extensions: 3467127
Number of successful extensions: 14656
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 14542
Number of HSP's gapped (non-prelim): 130
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)