Query 026654
Match_columns 235
No_of_seqs 80 out of 82
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g80_A Protein B2; RNA-binding 82.1 1.8 6.3E-05 33.2 4.6 28 169-196 49-76 (97)
2 2az0_A B2 protein; protein-RNA 70.1 6.7 0.00023 28.8 4.6 36 161-196 12-52 (73)
3 1xn7_A Hypothetical protein YH 62.2 2.8 9.6E-05 30.5 1.3 24 161-184 16-39 (78)
4 2ou3_A Tellurite resistance pr 60.0 41 0.0014 26.5 8.1 34 148-181 100-136 (161)
5 3r8s_N 50S ribosomal protein L 55.0 9.2 0.00031 30.5 3.3 78 70-148 12-101 (120)
6 1qgp_A Protein (double strande 53.9 6.5 0.00022 28.1 2.0 36 147-182 17-52 (77)
7 2k02_A Ferrous iron transport 53.5 3.5 0.00012 30.9 0.5 24 161-184 16-39 (87)
8 2jt1_A PEFI protein; solution 52.9 8 0.00027 28.0 2.4 23 161-183 24-46 (77)
9 2zjr_K 50S ribosomal protein L 51.4 9.5 0.00033 30.2 2.8 77 71-148 13-101 (116)
10 2g3v_A CAG pathogenicity islan 50.5 14 0.00048 30.8 3.8 109 61-203 61-183 (208)
11 2kj1_A BM2 protein; cytoplasmi 49.4 26 0.0009 26.1 4.7 34 172-205 18-51 (89)
12 1qbj_A Protein (double-strande 47.4 11 0.00039 27.3 2.5 34 149-182 15-48 (81)
13 1gd8_A 50S ribosomal protein L 46.3 5.9 0.0002 31.5 0.9 77 71-148 13-101 (118)
14 2jtw_A Transmembrane helix 7 o 45.8 7.8 0.00027 23.3 1.1 11 140-150 7-17 (26)
15 1w53_A Phosphoserine phosphata 43.6 98 0.0034 23.0 7.4 68 26-106 9-79 (84)
16 2jt1_A PEFI protein; solution 39.8 30 0.001 24.9 3.8 29 68-102 22-50 (77)
17 3eyi_A Z-DNA-binding protein 1 38.8 15 0.00051 27.0 1.9 33 149-186 15-48 (72)
18 3fsp_A A/G-specific adenine gl 35.5 36 0.0012 30.5 4.4 70 7-89 14-92 (369)
19 3gl5_A Putative DSBA oxidoredu 34.2 2E+02 0.0068 23.8 10.9 99 78-183 57-160 (239)
20 1ec6_A RNA-binding protein NOV 30.9 47 0.0016 23.6 3.6 28 187-214 57-84 (87)
21 3lsg_A Two-component response 30.8 1.1E+02 0.0037 21.6 5.6 41 161-201 19-66 (103)
22 3n1e_A Vacuolar protein sortin 30.6 84 0.0029 25.4 5.4 103 58-193 6-127 (141)
23 2l76_A Nfatc2-interacting prot 30.3 10 0.00035 29.1 -0.1 22 73-94 41-62 (95)
24 3kw6_A 26S protease regulatory 29.5 11 0.00038 26.1 -0.0 45 68-115 1-45 (78)
25 2k9s_A Arabinose operon regula 29.0 1.1E+02 0.0036 21.8 5.3 42 160-201 19-67 (107)
26 2g3q_A Protein YBL047C; endocy 28.5 39 0.0013 21.2 2.5 29 161-190 5-33 (43)
27 3feu_A Putative lipoprotein; a 27.9 82 0.0028 24.9 4.9 24 160-183 107-131 (185)
28 3pls_A Macrophage-stimulating 27.7 91 0.0031 25.1 5.3 22 51-73 209-230 (298)
29 3bbo_P Ribosomal protein L17; 27.5 21 0.00073 30.9 1.3 78 70-148 101-190 (205)
30 3axj_A GM27569P, translin; tra 27.1 2.2E+02 0.0076 24.5 7.9 37 168-207 196-232 (249)
31 2heo_A Z-DNA binding protein 1 26.6 50 0.0017 22.4 3.0 36 149-186 15-50 (67)
32 2dak_A Ubiquitin carboxyl-term 25.4 67 0.0023 21.9 3.4 39 159-201 8-46 (63)
33 4aw0_A HPDK1, 3-phosphoinositi 24.0 68 0.0023 28.3 4.1 56 52-109 216-273 (311)
34 1zk8_A Transcriptional regulat 23.4 98 0.0034 22.9 4.4 26 12-38 41-66 (183)
35 3c1x_A Hepatocyte growth facto 23.3 1.5E+02 0.0051 25.8 6.1 21 51-72 277-297 (373)
36 2fji_1 Exocyst complex compone 23.1 59 0.002 29.4 3.5 88 7-96 221-328 (399)
37 2y1q_A CLPC N-domain, negative 23.0 2.4E+02 0.0081 21.0 6.8 97 77-187 44-143 (150)
38 2gqb_A Conserved hypothetical 22.9 3E+02 0.01 22.1 7.4 68 120-193 47-118 (130)
39 2nvj_A 25MER peptide from vacu 21.9 10 0.00035 22.8 -1.2 12 138-149 10-21 (26)
40 3oio_A Transcriptional regulat 21.3 1.8E+02 0.006 20.8 5.3 42 160-201 22-70 (113)
41 2w48_A Sorbitol operon regulat 21.3 51 0.0017 28.6 2.6 25 162-186 22-46 (315)
42 3nl9_A Putative NTP pyrophosph 21.1 2.1E+02 0.0071 23.5 6.2 76 9-84 7-100 (171)
43 3fgx_A Rbstp2171; structural g 20.4 55 0.0019 25.9 2.4 70 15-89 37-106 (114)
44 1wm3_A Ubiquitin-like protein 20.2 19 0.00065 24.9 -0.3 23 71-93 20-42 (72)
45 1v38_A SAM-domain protein sams 20.1 42 0.0014 23.9 1.5 53 31-83 14-69 (78)
No 1
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=82.08 E-value=1.8 Score=33.22 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.7
Q ss_pred HhcCCChhhhHhhHHHHHhhHHHHHHHH
Q 026654 169 AVLNVNKRSVDRDLDVYRNLLSKLLQAK 196 (235)
Q Consensus 169 ~~Lgls~~kv~kDL~lYrs~LeKm~QA~ 196 (235)
.+|....++|.|||+-|+.-|.|+.|-.
T Consensus 49 ~sl~~qDpnV~kDLdn~~acL~k~~~t~ 76 (97)
T 3g80_A 49 QTLMIADPNVNKDLRAFCEFLTVQHQRA 76 (97)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCchHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999998743
No 2
>2az0_A B2 protein; protein-RNA complex, four-helix bundle, viral protein/RNA complex; HET: 5BU; 2.60A {Flock house virus} SCOP: a.30.8.1 PDB: 2az2_A* 2b9z_A
Probab=70.07 E-value=6.7 Score=28.82 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=26.9
Q ss_pred HHHHHHHHH---hcCCCh--hhhHhhHHHHHhhHHHHHHHH
Q 026654 161 PTVLEKLCA---VLNVNK--RSVDRDLDVYRNLLSKLLQAK 196 (235)
Q Consensus 161 ~~~l~~l~~---~Lgls~--~kv~kDL~lYrs~LeKm~QA~ 196 (235)
|..|+++++ ++-+.. ++|.|||+-|+.-|.|+.|-.
T Consensus 12 P~~l~q~~q~v~~~t~qda~pnV~kDLdn~~acL~k~~~t~ 52 (73)
T 2az0_A 12 PDRIQTAVEAAMGMSYQDAPNNVRRDLDNLHACLNKAKLTV 52 (73)
T ss_dssp HHHHHHHHHTGGGSCCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 555666663 333444 899999999999999998743
No 3
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=62.22 E-value=2.8 Score=30.50 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCChhhhHhhHHH
Q 026654 161 PTVLEKLCAVLNVNKRSVDRDLDV 184 (235)
Q Consensus 161 ~~~l~~l~~~Lgls~~kv~kDL~l 184 (235)
.-.+.+|++.||+|...|.+||+.
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 345788999999999999999954
No 4
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=60.02 E-value=41 Score=26.50 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCCH---HHHHHHHHhcCCChhhhHhh
Q 026654 148 GLFRLLELANATEP---TVLEKLCAVLNVNKRSVDRD 181 (235)
Q Consensus 148 GLf~LLE~~~~~d~---~~l~~l~~~Lgls~~kv~kD 181 (235)
.++.+.-..|..++ ..|.++|+.||++...++.=
T Consensus 100 ~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~~~~~l 136 (161)
T 2ou3_A 100 SAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQL 136 (161)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 34444433344443 56999999999998875543
No 5
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=54.97 E-value=9.2 Score=30.48 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=61.2
Q ss_pred CCchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCccc---cccccCCcchhHHHHHHHHHHhcCCC
Q 026654 70 PSEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTASS---LVEFPSKEGEVEGLLKDIAERASGKG 137 (235)
Q Consensus 70 ~pe~~~~~IF~Alc~a~~---------~Dp~q~r~dA~~l~~~A~~~s~~~---l~~~~~~~g~~~~~l~~Ia~~~~~~~ 137 (235)
++.+||.+++..++.||= --+..+|.-|++|..+|+.-+... ...|+....-+..++..|+.+-+ +-
T Consensus 12 r~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~elapry~-~R 90 (120)
T 3r8s_N 12 RNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFA-SR 90 (120)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHHHHTT-TC
T ss_pred CChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-CC
Confidence 356899999999999873 357889999999999999776543 55777766778889999998875 45
Q ss_pred CCcchHHHHHH
Q 026654 138 NFSYSRFFAVG 148 (235)
Q Consensus 138 ~f~YSRlfAIG 148 (235)
+--|+|+.=+|
T Consensus 91 ~GGYTRI~K~~ 101 (120)
T 3r8s_N 91 AGGYTRILKCG 101 (120)
T ss_dssp CSCCEEEEEEE
T ss_pred CCCeEEEEECC
Confidence 55799986554
No 6
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=53.89 E-value=6.5 Score=28.08 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhcCCChhhhHhhH
Q 026654 147 VGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 182 (235)
Q Consensus 147 IGLf~LLE~~~~~d~~~l~~l~~~Lgls~~kv~kDL 182 (235)
-.|+.+|...+..++....+|++.||++...|++.|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 346677766665566678899999999999999987
No 7
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=53.52 E-value=3.5 Score=30.87 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCChhhhHhhHHH
Q 026654 161 PTVLEKLCAVLNVNKRSVDRDLDV 184 (235)
Q Consensus 161 ~~~l~~l~~~Lgls~~kv~kDL~l 184 (235)
.-.+.+|++.||+|...|.+||+.
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 345788999999999999999964
No 8
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=52.85 E-value=8 Score=28.00 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCChhhhHhhHH
Q 026654 161 PTVLEKLCAVLNVNKRSVDRDLD 183 (235)
Q Consensus 161 ~~~l~~l~~~Lgls~~kv~kDL~ 183 (235)
|-.+.+||+.||+|...|.+||.
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHH
Confidence 34588999999999999999995
No 9
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=51.38 E-value=9.5 Score=30.19 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=60.4
Q ss_pred CchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCc---cccccccCCcchhHHHHHHHHHHhcCCCC
Q 026654 71 SEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTA---SSLVEFPSKEGEVEGLLKDIAERASGKGN 138 (235)
Q Consensus 71 pe~~~~~IF~Alc~a~~~---------Dp~q~r~dA~~l~~~A~~~s~---~~l~~~~~~~g~~~~~l~~Ia~~~~~~~~ 138 (235)
+.+||.++|..++.||=. -+..+|.-|++|..+|+.-+. .....|+....-+..++..|+.+-+ +.+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (116)
T 2zjr_K 13 NSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYA-ERP 91 (116)
T ss_dssp CTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTT-TSC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 467999999999998743 478999999999999997664 2345666666678888999998886 455
Q ss_pred CcchHHHHHH
Q 026654 139 FSYSRFFAVG 148 (235)
Q Consensus 139 f~YSRlfAIG 148 (235)
--|+|++=+|
T Consensus 92 GGYTRI~K~~ 101 (116)
T 2zjr_K 92 GGYTRILRVG 101 (116)
T ss_dssp SCCCEEEECC
T ss_pred CCeeEEEECC
Confidence 5899987555
No 10
>2g3v_A CAG pathogenicity island protein 13; pathogenicity island, type IV secretion system, unknown function; 2.30A {Helicobacter pylori}
Probab=50.47 E-value=14 Score=30.83 Aligned_cols=109 Identities=23% Similarity=0.403 Sum_probs=55.6
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCCHH--HHHH-HHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCC
Q 026654 61 VYDRLMEGYPSEEDREAIFQAYITALKEDPE--QYRI-DAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKG 137 (235)
Q Consensus 61 ~fd~fm~GY~pe~~~~~IF~Alc~a~~~Dp~--q~r~-dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~~~ 137 (235)
+.|.+...|--+ +.|.++|+|.|-- .||- +++++ .+|.+||+ ||
T Consensus 61 aldkvlrnymkd------yraviksigvdkfkkvyrllesetm-----------------------ellhaiae----np 107 (208)
T 2g3v_A 61 ALDKVLRNYMKD------YRAVIKSIGVDKFKKVYRLLESETM-----------------------ELLHAIAE----NP 107 (208)
T ss_dssp HHHHHHHHHSSC------HHHHHHHTCHHHHHHHHHHHHHHHH-----------------------HHHHHHHH----CT
T ss_pred hHHHHHHHHHHH------HHHHHHHhchHHHHHHHHHHHHHHH-----------------------HHHHHHHh----CC
Confidence 345555555433 5689999998742 2331 22222 36889998 99
Q ss_pred CCcchHHH--HHHHHHHHhhcCC----CC----HHHHHHHHHhcCCChhhhHhhHHH-HHhhHHHHHHHHHHHHHHH
Q 026654 138 NFSYSRFF--AVGLFRLLELANA----TE----PTVLEKLCAVLNVNKRSVDRDLDV-YRNLLSKLLQAKELLKEYV 203 (235)
Q Consensus 138 ~f~YSRlf--AIGLf~LLE~~~~----~d----~~~l~~l~~~Lgls~~kv~kDL~l-Yrs~LeKm~QA~el~eE~~ 203 (235)
+|.+|+|- -+|+|--.= +.+ +. ...++--...|.+-+--|--|-++ |-.||.-++|--..+.+.+
T Consensus 108 nflfskfdrsilgiflpff-skpimfkmsiremdsqielygtklpllklfvmtdeemnfyanlktieqyndyvrdll 183 (208)
T 2g3v_A 108 NFLFSKFDRSILGIFLPFF-SKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDEEMNFYANLKTIEQYNDYVRDLL 183 (208)
T ss_dssp TSSCBGGGGGGGGGTGGGT-CHHHHHHSCHHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHCCCHHHHHHHHHTC-
T ss_pred chhHHhhhHHHHHHhhHhc-ccchhhHhhHHHHhhHHHHhcccchHHHHHHcchHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999874 345542110 000 01 122444445555544444333222 2234555666555544433
No 11
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=49.43 E-value=26 Score=26.05 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=30.8
Q ss_pred CCChhhhHhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 026654 172 NVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR 205 (235)
Q Consensus 172 gls~~kv~kDL~lYrs~LeKm~QA~el~eE~~~~ 205 (235)
|=+++.++|...+.|-+-.|=-||+|-|+|++..
T Consensus 18 ~pnke~inrevsilrh~yqkeiqaketmk~~ls~ 51 (89)
T 2kj1_A 18 GPNKETINREVSILRHSYQKEIQAKETMKEVLSD 51 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999864
No 12
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=47.40 E-value=11 Score=27.31 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=25.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHhcCCChhhhHhhH
Q 026654 149 LFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 182 (235)
Q Consensus 149 Lf~LLE~~~~~d~~~l~~l~~~Lgls~~kv~kDL 182 (235)
|..+|...++-+.....+|++.||+|...|++.|
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4556654544445567889999999999999987
No 13
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=46.35 E-value=5.9 Score=31.45 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=59.4
Q ss_pred CchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCc---cccccccCCcchhHHHHHHHHHHhcCCCC
Q 026654 71 SEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTA---SSLVEFPSKEGEVEGLLKDIAERASGKGN 138 (235)
Q Consensus 71 pe~~~~~IF~Alc~a~~---------~Dp~q~r~dA~~l~~~A~~~s~---~~l~~~~~~~g~~~~~l~~Ia~~~~~~~~ 138 (235)
+.+||.+++..++.||= --+..+|.-|++|..+|+.-+. .....|+....-+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (118)
T 1gd8_A 13 HSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYR-DRQ 91 (118)
T ss_dssp -CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTS-SCC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 45799999999999873 3478999999999999996654 2345666666678888999998886 455
Q ss_pred CcchHHHHHH
Q 026654 139 FSYSRFFAVG 148 (235)
Q Consensus 139 f~YSRlfAIG 148 (235)
--|+|+.=+|
T Consensus 92 GGYTRI~K~~ 101 (118)
T 1gd8_A 92 GGYTRVLKLA 101 (118)
T ss_dssp SCCEEEEEEE
T ss_pred CCeEEEEECC
Confidence 5899986554
No 14
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=45.77 E-value=7.8 Score=23.32 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=9.8
Q ss_pred cchHHHHHHHH
Q 026654 140 SYSRFFAVGLF 150 (235)
Q Consensus 140 ~YSRlfAIGLf 150 (235)
.|+|++|+||-
T Consensus 7 sylRlwaLsLa 17 (26)
T 2jtw_A 7 SYLRLWALSLA 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHhhhh
Confidence 59999999985
No 15
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=43.61 E-value=98 Score=22.99 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=54.0
Q ss_pred cchhHHHHHHHHHHhhhcccCccccccchhhhHHHHHHHHh--cCCCCchhHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Q 026654 26 SIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM--EGYPSEEDREAIFQAYITALKED-PEQYRIDAQKLEE 102 (235)
Q Consensus 26 siYrrvv~ELLVe~HLl~~n~~F~yD~lfAlG~vt~fd~fm--~GY~pe~~~~~IF~Alc~a~~~D-p~q~r~dA~~l~~ 102 (235)
.-|+.++++.|.. .|. =+|.-.+.|-+-+ ++..| |+--+|-...++.+..+ |+++..-=.=|.+
T Consensus 9 ~~Y~~iL~~yl~~-----------~~E-~~Ly~~q~fs~~~iek~i~P-EeiV~iHk~~i~el~~~l~e~v~~Sfd~L~E 75 (84)
T 1w53_A 9 QRYHQLLSRYIAE-----------LTE-TSLYQAQKFSRKTIEHQIPP-EEIISIHRKVLKELYPSLPEDVFHSLDFLIE 75 (84)
T ss_dssp HHHHHHHHHHHHH-----------CCH-HHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----------ccH-HHHHHHHHhhHHHHHcCCCH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 4588899988876 445 6788889999988 99987 58999999999999999 9998766555555
Q ss_pred HHhc
Q 026654 103 WARG 106 (235)
Q Consensus 103 ~A~~ 106 (235)
...|
T Consensus 76 vm~g 79 (84)
T 1w53_A 76 VMIG 79 (84)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 16
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=39.77 E-value=30 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=25.5
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 026654 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEE 102 (235)
Q Consensus 68 GY~pe~~~~~IF~Alc~a~~~Dp~q~r~dA~~l~~ 102 (235)
||||. ..-||.++|+.+..+|.|-..|++
T Consensus 22 g~~ps------v~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 22 GAPVK------TRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp TSCEE------HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcC------HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78876 567899999999999999999985
No 17
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=38.76 E-value=15 Score=26.98 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=24.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHhcCCChhh-hHhhHHHHH
Q 026654 149 LFRLLELANATEPTVLEKLCAVLNVNKRS-VDRDLDVYR 186 (235)
Q Consensus 149 Lf~LLE~~~~~d~~~l~~l~~~Lgls~~k-v~kDL~lYr 186 (235)
++++|+..|+. ..-.|+.+||+...| |+.|| |.
T Consensus 15 I~~fL~~~Gp~---~AL~IAK~LGlktAK~VNp~L--Y~ 48 (72)
T 3eyi_A 15 IYRFLKDNGPQ---RALVIAQALGMRTAKDVNRDL--YR 48 (72)
T ss_dssp HHHHHHHHCSE---EHHHHHHHTTCCSGGGTHHHH--HH
T ss_pred HHHHHHHcCCc---hHHHHHHHhCcchhhhcCHHH--HH
Confidence 57777766643 234578899999999 99998 64
No 18
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=35.51 E-value=36 Score=30.49 Aligned_cols=70 Identities=13% Similarity=0.265 Sum_probs=47.8
Q ss_pred CchhHhHHHHHhhCCCcCC-----cchhHHHHHHHHHHhhhcccCccccccchhhhHHHHHHHHhcCCCCchhHHH----
Q 026654 7 PTVAETKMNFLKLYKRPIP-----SIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREA---- 77 (235)
Q Consensus 7 ~TVSDTKr~F~~~~~~pI~-----siYrrvv~ELLVe~HLl~~n~~F~yD~lfAlG~vt~fd~fm~GY~pe~~~~~---- 77 (235)
.++++.=..+|..+.++.| .-|.-+|-++|.++- + .-.+.++|.+|++.||..++...
T Consensus 14 ~~~~~~l~~w~~~~~r~lpw~~~~~p~~~lv~~il~qqt------~-------~~~~~~~~~~l~~~~pt~~~la~a~~~ 80 (369)
T 3fsp_A 14 REFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQT------R-------VETVIPYFEQFIDRFPTLEALADADED 80 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTS------C-------HHHHHHHHHHHHHHCCSHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHhccC------c-------HHHHHHHHHHHHHHCCCHHHHHCCCHH
Confidence 4577888889999998876 567777777776642 1 22367788999999986544321
Q ss_pred HHHHHHHhcCCC
Q 026654 78 IFQAYITALKED 89 (235)
Q Consensus 78 IF~Alc~a~~~D 89 (235)
-...++..+|+-
T Consensus 81 ~l~~~i~~~G~~ 92 (369)
T 3fsp_A 81 EVLKAWEGLGYY 92 (369)
T ss_dssp HHHHTTTTSSCT
T ss_pred HHHHHHHhcChH
Confidence 123456788984
No 19
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=34.18 E-value=2e+02 Score=23.80 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCC-cc-hhHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH-h
Q 026654 78 IFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSK-EG-EVEGLLKDIAERASGKGNFSYSRFFAVGLFRLL-E 154 (235)
Q Consensus 78 IF~Alc~a~~~Dp~q~r~dA~~l~~~A~~~s~~~l~~~~~~-~g-~~~~~l~~Ia~~~~~~~~f~YSRlfAIGLf~LL-E 154 (235)
+-+.+-+-.|..|++.+.--..+..+|+..... + .|-.. .. ...+.-..++ +...++ +.. |.-.||+.. .
T Consensus 57 ~~~~~~~k~g~~~~~~~~~~~~~~r~a~~~Gl~-f-~~~~~~~~nt~~a~r~~~~--A~~~g~--~~~-~~~alf~a~~~ 129 (239)
T 3gl5_A 57 VLTMLTAKYGMSQEQAQAGEDNLGAQAAAEGLA-Y-RTRDRDHGSTFDLHRLLHL--AKERGR--HEA-LLDAFYRGNFA 129 (239)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCC-C-CCSSCEECCCHHHHHHHHH--HHTTTC--HHH-HHHHHHHHHHT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCC-c-cCCCCCCCChHHHHHHHHH--HHhhCc--HHH-HHHHHHHHHHh
Confidence 344556667888998888888888888866542 1 12110 11 1111111111 112232 322 334566655 2
Q ss_pred h-cCCCC-HHHHHHHHHhcCCChhhhHhhHH
Q 026654 155 L-ANATE-PTVLEKLCAVLNVNKRSVDRDLD 183 (235)
Q Consensus 155 ~-~~~~d-~~~l~~l~~~Lgls~~kv~kDL~ 183 (235)
. .+..| ++.|.++++.+||+.+.+.++++
T Consensus 130 ~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~ 160 (239)
T 3gl5_A 130 DERSVFNDDERLVELAVGAGLDAEEVRAVLA 160 (239)
T ss_dssp CSSCCSSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHc
Confidence 2 23368 99999999999999999988774
No 20
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=30.85 E-value=47 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHhhc
Q 026654 187 NLLSKLLQAKELLKEYVDREKKKREERT 214 (235)
Q Consensus 187 s~LeKm~QA~el~eE~~~~ekKKre~r~ 214 (235)
+.-+.+..|+.+|.+.+..+..||+.++
T Consensus 57 G~~~~v~~A~~~I~~~i~~~~~~r~~~~ 84 (87)
T 1ec6_A 57 GSPAATQAAQYLISQRVTYEQGVRASNP 84 (87)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHHhcccccccccc
Confidence 4578899999999999998888877654
No 21
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=30.82 E-value=1.1e+02 Score=21.57 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCChhhhHhhHHHHHh-------hHHHHHHHHHHHHH
Q 026654 161 PTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 201 (235)
Q Consensus 161 ~~~l~~l~~~Lgls~~kv~kDL~lYrs-------~LeKm~QA~el~eE 201 (235)
+-.+++||+.+|+|...+.+-+--+-+ +.-+|..|++++.+
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~~ 66 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLT 66 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHC
Confidence 456889999999999999887755533 33456667666643
No 22
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=30.56 E-value=84 Score=25.38 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCC
Q 026654 58 FVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKG 137 (235)
Q Consensus 58 ~vt~fd~fm~GY~pe~~~~~IF~Alc~a~~~Dp~q~r~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~~~ 137 (235)
+..=||++.+-|+ +|+..|++=|+.=.+.=. ...+..|-.+...+...+..|++..
T Consensus 6 lL~efDkv~rdy~--eH~~eI~~KLv~Im~~r~------------------~~~l~~Wd~k~pvpS~~m~tl~Ke~---- 61 (141)
T 3n1e_A 6 MLRHFDHITKDYH--DHIAEISAKLVAIMDSLF------------------DKLLSKYEVKAPVPSPCFRNICKQM---- 61 (141)
T ss_dssp HHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH------------------HHHHTTCCCCSSSSCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH------------------HHHHHHhccCCCCCCHHHHHHHHHH----
Confidence 3455999999995 799999988775443211 1112246444445556666666422
Q ss_pred CCcchHHHHHHHHHHHhhcCCCC-------------HHHHHHHHHhcCC----Chhh--hHhhHHHHHhhHHHHH
Q 026654 138 NFSYSRFFAVGLFRLLELANATE-------------PTVLEKLCAVLNV----NKRS--VDRDLDVYRNLLSKLL 193 (235)
Q Consensus 138 ~f~YSRlfAIGLf~LLE~~~~~d-------------~~~l~~l~~~Lgl----s~~k--v~kDL~lYrs~LeKm~ 193 (235)
.-|.+.|--.=+.+ .+.+.+-...+++ .+.+ |-+|+..|.++|.||.
T Consensus 62 ---------~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~ 127 (141)
T 3n1e_A 62 ---------TKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALK 127 (141)
T ss_dssp ---------HHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTST
T ss_pred ---------HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccC
Confidence 12344441111111 1235555566777 4554 8899999999999875
No 23
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=30.30 E-value=10 Score=29.08 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhcCCCHHHHH
Q 026654 73 EDREAIFQAYITALKEDPEQYR 94 (235)
Q Consensus 73 ~~~~~IF~Alc~a~~~Dp~q~r 94 (235)
....+||+|||+-.|.++..+|
T Consensus 41 t~l~KL~~aYc~r~gv~~~sir 62 (95)
T 2l76_A 41 EPLQSVVDHMATHLGVSPSRIL 62 (95)
T ss_dssp SCTHHHHHHHHHHHTSCGGGEE
T ss_pred ChHHHHHHHHHhhcCCChhhEE
Confidence 4567999999999999998765
No 24
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=29.53 E-value=11 Score=26.12 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=30.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccc
Q 026654 68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF 115 (235)
Q Consensus 68 GY~pe~~~~~IF~Alc~a~~~Dp~q~r~dA~~l~~~A~~~s~~~l~~~ 115 (235)
+.|..+.|..||..++.....+++ -|-..|.+...|.|+.||...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~---~dl~~la~~t~G~SGADi~~l 45 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRG---INLRKIAELMPGASGAEVKGV 45 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCc---cCHHHHHHHcCCCCHHHHHHH
Confidence 357888999999999988776432 133444455567777776643
No 25
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=28.98 E-value=1.1e+02 Score=21.81 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhcCCChhhhHhhHHHHHh-------hHHHHHHHHHHHHH
Q 026654 160 EPTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 201 (235)
Q Consensus 160 d~~~l~~l~~~Lgls~~kv~kDL~lYrs-------~LeKm~QA~el~eE 201 (235)
++-.+++||+.+|+|...+.+=.--+.+ +.-+|..|++++.+
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~ 67 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLST 67 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 4456888999999999988887655433 34567777777753
No 26
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=28.55 E-value=39 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCChhhhHhhHHHHHhhHH
Q 026654 161 PTVLEKLCAVLNVNKRSVDRDLDVYRNLLS 190 (235)
Q Consensus 161 ~~~l~~l~~~Lgls~~kv~kDL~lYrs~Le 190 (235)
++.+.+|.+ |||+.+.+.+=|....++++
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e 33 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLE 33 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHH
Confidence 456888876 89999999998877665544
No 27
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=27.93 E-value=82 Score=24.92 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=21.3
Q ss_pred CHHHHHHHHHhcCC-ChhhhHhhHH
Q 026654 160 EPTVLEKLCAVLNV-NKRSVDRDLD 183 (235)
Q Consensus 160 d~~~l~~l~~~Lgl-s~~kv~kDL~ 183 (235)
+++.|.+++..+|+ +.+++++|+.
T Consensus 107 ~~~~L~~~a~~~Gl~d~~~~~~~~~ 131 (185)
T 3feu_A 107 QQEAYSKAFTSRGLVSPYDFNEEQR 131 (185)
T ss_dssp HHHHHHHHHHTTTCCCGGGCCHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56789999999999 9999999874
No 28
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=27.74 E-value=91 Score=25.11 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=16.5
Q ss_pred ccchhhhHHHHHHHHhcCCCCch
Q 026654 51 DPVFALGFVTVYDRLMEGYPSEE 73 (235)
Q Consensus 51 D~lfAlG~vt~fd~fm~GY~pe~ 73 (235)
..|||+|++ .|+-++.|.||-.
T Consensus 209 ~Di~slG~i-l~~l~~g~~~~~~ 230 (298)
T 3pls_A 209 SDVWSFGVL-LWELLTRGAPPYR 230 (298)
T ss_dssp HHHHHHHHH-HHHHHHTSCCTTT
T ss_pred hchhhHHHH-HHHHhhCCCCCCc
Confidence 469999964 6788887887643
No 29
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=27.47 E-value=21 Score=30.88 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=60.8
Q ss_pred CCchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCc---cccccccCCcchhHHHHHHHHHHhcCCC
Q 026654 70 PSEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTA---SSLVEFPSKEGEVEGLLKDIAERASGKG 137 (235)
Q Consensus 70 ~pe~~~~~IF~Alc~a~~~---------Dp~q~r~dA~~l~~~A~~~s~---~~l~~~~~~~g~~~~~l~~Ia~~~~~~~ 137 (235)
++.+||.+++.-++.+|=. -+..+|.-|++|.-+|+..+. .....|+....-+..++..|+.+-+ +.
T Consensus 101 RtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eiaPRY~-dR 179 (205)
T 3bbo_P 101 RPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYG-ER 179 (205)
T ss_dssp SCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSGGGGS-SC
T ss_pred CChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CC
Confidence 3578999999999998743 478999999999999997665 3345677666778888899998875 45
Q ss_pred CCcchHHHHHH
Q 026654 138 NFSYSRFFAVG 148 (235)
Q Consensus 138 ~f~YSRlfAIG 148 (235)
+--|+|+.=+|
T Consensus 180 ~GGYTRIlKlg 190 (205)
T 3bbo_P 180 NGGYTRIIRTL 190 (205)
T ss_dssp CSCCEECCBCS
T ss_pred CCCeeEEEECC
Confidence 55799987655
No 30
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=27.05 E-value=2.2e+02 Score=24.50 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHhcCCChhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 026654 168 CAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREK 207 (235)
Q Consensus 168 ~~~Lgls~~kv~kDL~lYrs~LeKm~QA~el~eE~~~~ek 207 (235)
...|+++.+-+.|=+|.-|.+++|++. ++=++..|.-
T Consensus 196 f~~Ln~~n~~LRkK~D~lk~sv~KvE~---v~Ydl~vRg~ 232 (249)
T 3axj_A 196 FRLLNLKNDGLRKRFDALKYDVKKIEE---VVYDVSIRGL 232 (249)
T ss_dssp HHHTCCCSSHHHHHHHHHHHHHHHHHH---HHHHHHHTTC
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHH---HHHHhhhcCC
Confidence 357888888889999999999999887 3445555554
No 31
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=26.60 E-value=50 Score=22.44 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=25.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHhcCCChhhhHhhHHHHH
Q 026654 149 LFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYR 186 (235)
Q Consensus 149 Lf~LLE~~~~~d~~~l~~l~~~Lgls~~kv~kDL~lYr 186 (235)
|..+|...+ .+-...+|++.+|+|...|.|.|...+
T Consensus 15 IL~~L~~~~--~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 15 ILQVLSDDG--GPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHHC--SCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445553221 244578899999999999999986543
No 32
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.36 E-value=67 Score=21.90 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhcCCChhhhHhhHHHHHhhHHHHHHHHHHHHH
Q 026654 159 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 201 (235)
Q Consensus 159 ~d~~~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm~QA~el~eE 201 (235)
.+++.+.+|.+ |||+.+.+.+=|....++ +++|.+.+-+
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~n---ve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTIVS-MGFSRDQALKALRATNNS---LERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSC---SHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCC---HHHHHHHHHh
Confidence 36788999988 899999999988766655 5667666543
No 33
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=24.04 E-value=68 Score=28.27 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=36.1
Q ss_pred cchhhhHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Q 026654 52 PVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTA 109 (235)
Q Consensus 52 ~lfAlG~vt~fd~fm~GY~p--e~~~~~IF~Alc~a~~~Dp~q~r~dA~~l~~~A~~~s~ 109 (235)
.|||||++ +|..++ |.+| .++...++..+++.-=.=|+.+-.+++.|....-...+
T Consensus 216 DiWSlGvi-lyeml~-G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp 273 (311)
T 4aw0_A 216 DLWALGCI-IYQLVA-GLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDA 273 (311)
T ss_dssp HHHHHHHH-HHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSG
T ss_pred HHHHHHHH-HHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccCCH
Confidence 49999976 566555 6666 45677888888875433345555667666655444443
No 34
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=23.38 E-value=98 Score=22.87 Aligned_cols=26 Identities=8% Similarity=-0.019 Sum_probs=18.7
Q ss_pred hHHHHHhhCCCcCCcchhHHHHHHHHH
Q 026654 12 TKMNFLKLYKRPIPSIYNTVLQELIVQ 38 (235)
Q Consensus 12 TKr~F~~~~~~pI~siYrrvv~ELLVe 38 (235)
||..||..|+- -..|+..++++.+-+
T Consensus 41 s~~t~Y~~F~s-K~~L~~~~~~~~~~~ 66 (183)
T 1zk8_A 41 RSPSLYNHVKG-LQDVRKNLGIYGIKK 66 (183)
T ss_dssp CHHHHTTTCSS-HHHHHHHHHHHHHHH
T ss_pred CchHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 78899999986 556666666665544
No 35
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=23.27 E-value=1.5e+02 Score=25.80 Aligned_cols=21 Identities=19% Similarity=0.589 Sum_probs=15.8
Q ss_pred ccchhhhHHHHHHHHhcCCCCc
Q 026654 51 DPVFALGFVTVYDRLMEGYPSE 72 (235)
Q Consensus 51 D~lfAlG~vt~fd~fm~GY~pe 72 (235)
..|||+|++ .|+-++.|.+|-
T Consensus 277 ~DvwSlG~i-l~ellt~~~~p~ 297 (373)
T 3c1x_A 277 SDVWSFGVL-LWELMTRGAPPY 297 (373)
T ss_dssp HHHHHHHHH-HHHHHTTSCCSC
T ss_pred HHHHHHHHH-HHHHHhCcCCCC
Confidence 569999975 677777777664
No 36
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=23.06 E-value=59 Score=29.36 Aligned_cols=88 Identities=10% Similarity=0.194 Sum_probs=54.0
Q ss_pred CchhHhHHHHHhhC-CCcCCcchhHHHHHHHHHH------hhhcccCcccc-ccchhhhHH---HHHHHHhcCCCCchh-
Q 026654 7 PTVAETKMNFLKLY-KRPIPSIYNTVLQELIVQQ------HLMRYKRTYQY-DPVFALGFV---TVYDRLMEGYPSEED- 74 (235)
Q Consensus 7 ~TVSDTKr~F~~~~-~~pI~siYrrvv~ELLVe~------HLl~~n~~F~y-D~lfAlG~v---t~fd~fm~GY~pe~~- 74 (235)
.|+-.|-..|+..| ++.-|+.|..++++++-+. +|+. ...|+- -..+|..+. ..+..|..+|.+..+
T Consensus 221 ~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~ 299 (399)
T 2fji_1 221 QQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNES 299 (399)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 46778888999999 8888899998888876653 4454 445540 146666653 345555556665443
Q ss_pred -------HHHHHHHHHHhcCCCH-HHHHHH
Q 026654 75 -------REAIFQAYITALKEDP-EQYRID 96 (235)
Q Consensus 75 -------~~~IF~Alc~a~~~Dp-~q~r~d 96 (235)
+-.....|.. ++.|| +.+-..
T Consensus 300 ~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~ 328 (399)
T 2fji_1 300 KDTLITQNFTVMEFFMD-LSCEPIDSILDI 328 (399)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHSCGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHH-hcCCcHHHHHHH
Confidence 2244555555 55555 444433
No 37
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=23.03 E-value=2.4e+02 Score=21.02 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHH---HHHHHHhcCCCCCcchHHHHHHHHHHH
Q 026654 77 AIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLL---KDIAERASGKGNFSYSRFFAVGLFRLL 153 (235)
Q Consensus 77 ~IF~Alc~a~~~Dp~q~r~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l---~~Ia~~~~~~~~f~YSRlfAIGLf~LL 153 (235)
.+...+++.+|.|++.++.+.+.... ..+... ....-....+.+| ..+|.+. +..|-=+--+-+ .|+
T Consensus 44 ~~~~~iL~~~g~~~~~l~~~l~~~l~---~~~~~~--~~~~~s~~~~~vL~~A~~~A~~~--~~~~i~~ehlLl---all 113 (150)
T 2y1q_A 44 GIAAKALQALGLGSEKIQKEVESLIG---RAQEMS--QTIHYTPRAKKVIELSMDEARKL--GHSYVGTEHILL---GLI 113 (150)
T ss_dssp SHHHHHHHHTTCCHHHHHHHHHHHHC---CC-------CCEECHHHHHHHHHHHHHHHHT--TCSSBCHHHHHH---HHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHhc---cCCccc--ccCCCCHHHHHHHHHHHHHHHHc--CCCeecHHHHHH---HHH
Confidence 46778899999999999988766542 222110 0011122334444 2233222 333333333322 333
Q ss_pred hhcCCCCHHHHHHHHHhcCCChhhhHhhHHHHHh
Q 026654 154 ELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 187 (235)
Q Consensus 154 E~~~~~d~~~l~~l~~~Lgls~~kv~kDL~lYrs 187 (235)
+.. +. ....+...+|++.+.+.+.+.-+++
T Consensus 114 ~~~---~~-~a~~~L~~~gi~~~~l~~~i~~~~g 143 (150)
T 2y1q_A 114 REG---EG-VAARVLNNLGVSLNKARQQVLQLLG 143 (150)
T ss_dssp HHC---CS-HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCC---Cc-HHHHHHHHcCCCHHHHHHHHHHHHC
Confidence 221 11 2335566689999998887765544
No 38
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=22.92 E-value=3e+02 Score=22.14 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=50.0
Q ss_pred chhHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhcCC-CCHHHHHHHHHhcCCCh---hhhHhhHHHHHhhHHHHH
Q 026654 120 GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA-TEPTVLEKLCAVLNVNK---RSVDRDLDVYRNLLSKLL 193 (235)
Q Consensus 120 g~~~~~l~~Ia~~~~~~~~f~YSRlfAIGLf~LLE~~~~-~d~~~l~~l~~~Lgls~---~kv~kDL~lYrs~LeKm~ 193 (235)
-++..+|..++++.+.+-+|.-| -|-|+.|| |- ...+.=++|+..||++. +.....+-|.|-++.|++
T Consensus 47 VDV~avL~~~~~~~~~~lnWrtS---IVDLmKlL---glDsSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk~vm~kLa 118 (130)
T 2gqb_A 47 IDVAPILDKAVKAKGEKLEWRTS---IVDLMKAL---DIDSSLSARKELAKELGYSGDMNDSASMNIWLHKQVMSKLV 118 (130)
T ss_dssp EECHHHHHHHHHHHSSCCCTTTC---HHHHHHHT---CCCCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHHHHcCcCCccHHH---HHHHHHHh---CCCccHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 47889999998877665566655 35556665 33 45788899999999874 566677788888888876
No 39
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic}
Probab=21.90 E-value=10 Score=22.83 Aligned_cols=12 Identities=42% Similarity=0.694 Sum_probs=9.7
Q ss_pred CCcchHHHHHHH
Q 026654 138 NFSYSRFFAVGL 149 (235)
Q Consensus 138 ~f~YSRlfAIGL 149 (235)
.-.|+|++|+||
T Consensus 10 tasylRlwaLsL 21 (26)
T 2nvj_A 10 TASYLRLWALSL 21 (26)
T ss_dssp TCHHHHGGGSCS
T ss_pred chHHHHHHhhhc
Confidence 347999999886
No 40
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=21.30 E-value=1.8e+02 Score=20.82 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=29.5
Q ss_pred CHHHHHHHHHhcCCChhhhHhhHHHHHh-------hHHHHHHHHHHHHH
Q 026654 160 EPTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 201 (235)
Q Consensus 160 d~~~l~~l~~~Lgls~~kv~kDL~lYrs-------~LeKm~QA~el~eE 201 (235)
++-.+++||+.+|+|...+.+-+--+-+ +.-+|..|++++.+
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~ 70 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQ 70 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 3456888999999999988887655522 23467777777754
No 41
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=21.30 E-value=51 Score=28.61 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCChhhhHhhHHHHH
Q 026654 162 TVLEKLCAVLNVNKRSVDRDLDVYR 186 (235)
Q Consensus 162 ~~l~~l~~~Lgls~~kv~kDL~lYr 186 (235)
-...+|++.||+|...|.|||..-+
T Consensus 22 ~~~~ela~~l~vS~~tIrRdL~~l~ 46 (315)
T 2w48_A 22 MTQAQIARELGIYRTTISRLLKRGR 46 (315)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3478899999999999999997543
No 42
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=21.11 E-value=2.1e+02 Score=23.52 Aligned_cols=76 Identities=8% Similarity=0.032 Sum_probs=38.3
Q ss_pred hhHhHHHHHhhCCCcCCc------------chhHHHHHHHHHHhhhcccCcccc-ccch--hhhHHHHHHHHhcCCCCch
Q 026654 9 VAETKMNFLKLYKRPIPS------------IYNTVLQELIVQQHLMRYKRTYQY-DPVF--ALGFVTVYDRLMEGYPSEE 73 (235)
Q Consensus 9 VSDTKr~F~~~~~~pI~s------------iYrrvv~ELLVe~HLl~~n~~F~y-D~lf--AlG~vt~fd~fm~GY~pe~ 73 (235)
--.-=+.||..|..|++. -++=+++|++++.=-...+..-.+ +.+. --++..+-....+-+.+..
T Consensus 7 ~f~~VkeFh~~fg~~~~~~P~~~~~e~~~lR~~li~EE~~e~~~~~~~~~~~ef~~av~~l~~~~~~a~~~~~~e~~~a~ 86 (171)
T 3nl9_A 7 YYQDVKQFHQTFHHPGADQPTAIPLDRGVKRATWTAEEAVVEFLHQSSQNETEFLAAIETFKAGLDQAVKKSLKETYPVT 86 (171)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCCCHHHHHHHHHHHHHHHTHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334468999999999875 244456776655433332222111 1111 1123333444456666554
Q ss_pred h---HHHHHHHHHH
Q 026654 74 D---REAIFQAYIT 84 (235)
Q Consensus 74 ~---~~~IF~Alc~ 84 (235)
+ ...+-+|||-
T Consensus 87 ~~~d~ve~~DaL~D 100 (171)
T 3nl9_A 87 EVERLVGQGDALTD 100 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 3 3445555553
No 43
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=20.45 E-value=55 Score=25.86 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=44.1
Q ss_pred HHHhhCCCcCCcchhHHHHHHHHHHhhhcccCccccccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCC
Q 026654 15 NFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKED 89 (235)
Q Consensus 15 ~F~~~~~~pI~siYrrvv~ELLVe~HLl~~n~~F~yD~lfAlG~vt~fd~fm~GY~pe~~~~~IF~Alc~a~~~D 89 (235)
.|-=.|.+|=++.|+|.+.++-- ....-...|.-|-|-.=- -..|..+++-|| +---.|-++|+..+|+.
T Consensus 37 ~~~y~Fk~Pt~~~YnRyi~t~a~--~~~aAakNflmd~V~~E~-KeaL~ellEE~P--Gaalqia~~Li~~lGls 106 (114)
T 3fgx_A 37 EFVFYFTRPKVSDISRFTKELNS--KPDMAMKNLTFSCIVPEQ-EEELRQAAEEFP--GLTFNTASRLMEIVGAS 106 (114)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHH--CHHHHHHHHHHTTBCGGG-HHHHHHHHHHST--THHHHHHHHHHHHHTCC
T ss_pred eEEEEecCCCHHHHHHHHHHHhc--chhHHHHHHHHHhcCccc-HHHHHHHHHHCc--cHHHHHHHHHHHHhCCc
Confidence 34446899999999999999865 333333334444333222 456677777665 34556677777777764
No 44
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=20.22 E-value=19 Score=24.90 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=17.7
Q ss_pred CchhHHHHHHHHHHhcCCCHHHH
Q 026654 71 SEEDREAIFQAYITALKEDPEQY 93 (235)
Q Consensus 71 pe~~~~~IF~Alc~a~~~Dp~q~ 93 (235)
|..--..|++|+|+..|.+|.++
T Consensus 20 ~~t~l~kl~~~y~~~~gi~~~~~ 42 (72)
T 1wm3_A 20 RHTPLSKLMKAYCERQGLSMRQI 42 (72)
T ss_dssp TTSCTHHHHHHHHHHHTCCTTTC
T ss_pred CCChHHHHHHHHHHHhCCCcceE
Confidence 44556789999999999887543
No 45
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=20.14 E-value=42 Score=23.88 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhcccCccc---cccchhhhHHHHHHHHhcCCCCchhHHHHHHHHH
Q 026654 31 VLQELIVQQHLMRYKRTYQ---YDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYI 83 (235)
Q Consensus 31 vv~ELLVe~HLl~~n~~F~---yD~lfAlG~vt~fd~fm~GY~pe~~~~~IF~Alc 83 (235)
-|.|.|..++|-.|-..|. ||.+=.+.-.|-=|---=|-.+.+||..|..|+-
T Consensus 14 ~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~ 69 (78)
T 1v38_A 14 TIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAE 69 (78)
T ss_dssp BHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4778999999999999995 5444444444555556668888889998887764
Done!