Query 026654
Match_columns 235
No_of_seqs 80 out of 82
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 18:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026654.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026654hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j5ya1 a.4.5.1 (A:3-67) Putat 45.4 4.3 0.00032 26.3 1.7 25 160-184 21-45 (65)
2 d1u2za_ c.66.1.31 (A:) Catalyt 44.5 19 0.0014 31.3 6.3 134 39-182 76-223 (406)
3 d3ci0k2 a.60.16.1 (K:94-203) P 44.1 12 0.0009 26.5 4.2 33 74-106 18-50 (110)
4 d2dt5a1 a.4.5.38 (A:4-77) Tran 43.6 5.4 0.00039 27.5 2.0 26 160-185 24-49 (74)
5 d2zjrk1 d.188.1.1 (K:3-115) Pr 42.1 13 0.00098 27.2 4.2 77 71-148 11-99 (113)
6 d1biaa1 a.4.5.1 (A:1-63) Bioti 41.4 6.5 0.00047 25.5 2.1 23 161-183 19-41 (63)
7 d1mzba_ a.4.5.42 (A:) Ferric u 31.6 22 0.0016 25.3 3.9 32 67-98 10-43 (134)
8 d1jhfa1 a.4.5.2 (A:2-72) LexA 28.9 34 0.0025 22.2 4.2 30 67-102 21-51 (71)
9 d1m5ya1 a.223.1.2 (A:25-164,A: 27.1 1E+02 0.0073 21.9 7.4 40 59-101 73-112 (173)
10 d1uu3a_ d.144.1.7 (A:) 3-phosp 26.9 18 0.0013 28.9 3.0 51 52-104 192-244 (288)
11 d1rdqe_ d.144.1.7 (E:) cAMP-de 26.2 22 0.0016 29.3 3.4 54 52-107 220-275 (350)
12 d1vola1 a.74.1.2 (A:113-207) T 25.3 32 0.0024 23.0 3.7 29 162-190 7-35 (95)
13 d1v9da_ a.207.1.1 (A:) Diaphan 24.6 1E+02 0.0073 24.9 7.4 18 162-179 268-285 (332)
14 d2g5ca1 a.100.1.12 (A:201-310) 24.1 69 0.005 22.3 5.5 51 158-211 53-108 (110)
15 d2e1oa1 a.4.1.1 (A:8-64) Homeo 23.3 54 0.004 20.3 4.3 29 151-179 17-45 (57)
16 d1ku3a_ a.4.13.2 (A:) Sigma70 23.2 12 0.0009 24.2 0.9 32 159-193 26-57 (61)
17 d1aisb1 a.74.1.2 (B:1108-1205) 23.2 31 0.0023 23.2 3.3 29 162-190 7-35 (98)
18 d1whca_ a.5.2.1 (A:) UBA/UBX 3 22.9 25 0.0018 22.9 2.5 40 159-201 8-47 (64)
19 d2p7vb1 a.4.13.2 (B:546-613) S 21.6 14 0.00099 24.6 0.9 31 159-192 23-53 (68)
20 d1wiva_ a.5.2.1 (A:) Ubiquitin 21.3 31 0.0023 23.0 2.8 37 159-199 28-64 (73)
21 d1i4aa_ a.65.1.1 (A:) Annexin 21.0 62 0.0045 26.4 5.3 79 67-154 2-90 (309)
22 d1oqya1 a.5.2.1 (A:160-200) DN 20.2 16 0.0012 22.1 0.9 29 161-190 5-33 (41)
23 d2cqma1 d.188.1.1 (A:28-136) P 20.2 21 0.0015 25.9 1.8 58 90-148 22-84 (109)
No 1
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=45.41 E-value=4.3 Score=26.31 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.3
Q ss_pred CHHHHHHHHHhcCCChhhhHhhHHH
Q 026654 160 EPTVLEKLCAVLNVNKRSVDRDLDV 184 (235)
Q Consensus 160 d~~~l~~l~~~Lgls~~kv~kDL~l 184 (235)
.+-..++|++.||+|...|.+||+.
T Consensus 21 ~~vs~~~La~~l~VS~~TI~rdi~~ 45 (65)
T d1j5ya1 21 EPVSGAQLAEELSVSRQVIVQDIAY 45 (65)
T ss_dssp SCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHHH
Confidence 4456788999999999999999964
No 2
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.46 E-value=19 Score=31.34 Aligned_cols=134 Identities=12% Similarity=0.129 Sum_probs=84.3
Q ss_pred HhhhcccCccccccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcCCccccc
Q 026654 39 QHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALK-----EDPEQYRIDAQKLEEWARGQTASSLV 113 (235)
Q Consensus 39 ~HLl~~n~~F~yD~lfAlG~vt~fd~fm~GY~pe~~~~~IF~Alc~a~~-----~Dp~q~r~dA~~l~~~A~~~s~~~l~ 113 (235)
-||..-.....|||+.=+ +.+++-.-+.|-|++..+.|-+.+|..+. -|....+.--.+.-++......+++.
T Consensus 76 ~~~~~~~~~~~~~p~~ei--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i~~~~~~~~~ 153 (406)
T d1u2za_ 76 YKVDFKRSTAIYNPMSEI--GKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRII 153 (406)
T ss_dssp EECCSSSCCSSSCHHHHH--HHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred EEEeccccccccCCHHHH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 466677778899999988 67899999999999999999999988664 56666666666666666666655555
Q ss_pred cccCC-cchhHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhc--------CCCCHHHHHHHHHhcCCChhhhHhhH
Q 026654 114 EFPSK-EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELA--------NATEPTVLEKLCAVLNVNKRSVDRDL 182 (235)
Q Consensus 114 ~~~~~-~g~~~~~l~~Ia~~~~~~~~f~YSRlfAIGLf~LLE~~--------~~~d~~~l~~l~~~Lgls~~kv~kDL 182 (235)
..+.. ++-+...+..|... .|+|..+-= .+-|..- |...+..+.++++.+++.+..+==||
T Consensus 154 ~~l~~~~~~~~~~~~~i~~~-------~y~r~v~p~-~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDL 223 (406)
T d1u2za_ 154 DHLETIDKIPRSFIHDFLHI-------VYTRSIHPQ-ANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDL 223 (406)
T ss_dssp HHHTTCCEEEHHHHHHHHHH-------HHHHHTGGG-GGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHhhcCCCCHHHHHHHHHH-------hhcccccCC-hHHhcccCCCCCCccccCCHHHHHHHHHHhCCCCCCEEEeC
Confidence 44433 22223333333322 255544311 0011100 11136678888888888887654443
No 3
>d3ci0k2 a.60.16.1 (K:94-203) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=44.13 E-value=12 Score=26.47 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 026654 74 DREAIFQAYITALKEDPEQYRIDAQKLEEWARG 106 (235)
Q Consensus 74 ~~~~IF~Alc~a~~~Dp~q~r~dA~~l~~~A~~ 106 (235)
..-..|..|+..+|.|+.+-+.-|..+.+|...
T Consensus 18 ~~~~~f~~Ll~~lgi~~~~a~~la~~l~DWiD~ 50 (110)
T d3ci0k2 18 LAVQQLIALISRLDVPAYRAELIAESLWEFIDE 50 (110)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCc
Confidence 345689999999999999999999999988864
No 4
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=43.56 E-value=5.4 Score=27.47 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.5
Q ss_pred CHHHHHHHHHhcCCChhhhHhhHHHH
Q 026654 160 EPTVLEKLCAVLNVNKRSVDRDLDVY 185 (235)
Q Consensus 160 d~~~l~~l~~~Lgls~~kv~kDL~lY 185 (235)
+.-.-++|++.+|+++.-|.|||..+
T Consensus 24 ~~vSS~~La~~~gi~~~qVRKDls~f 49 (74)
T d2dt5a1 24 HRTSSEQLGGLAQVTAFQVRKDLSYF 49 (74)
T ss_dssp CEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred eeEcHHHHHHHHCcCHHHHHHHHHHh
Confidence 33446788999999999999999865
No 5
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}
Probab=42.06 E-value=13 Score=27.19 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=59.6
Q ss_pred CchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 026654 71 SEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 138 (235)
Q Consensus 71 pe~~~~~IF~Alc~a~~---------~Dp~q~r~dA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~~~~ 138 (235)
+.+||.+++.-|+.+|= --+..+|.-+++|.-+|+..+.. .+.+|+.....+..++..|+.+-. +-+
T Consensus 11 ~~~hR~allrnl~~sLi~herI~TT~~KAKelr~~~EklIT~AK~~~~~~rr~~~~~l~~k~~v~kLf~~iapry~-~R~ 89 (113)
T d2zjrk1 11 NSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYA-ERP 89 (113)
T ss_dssp CTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTT-TSC
T ss_pred ChHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHheecccCChhhhhhhhhhcccHHHHHHHHHHHhHHhc-CCC
Confidence 56799999999998873 34788999999999999987763 445666666678888999998875 455
Q ss_pred CcchHHHHHH
Q 026654 139 FSYSRFFAVG 148 (235)
Q Consensus 139 f~YSRlfAIG 148 (235)
--|+|++=+|
T Consensus 90 GGYTRI~kl~ 99 (113)
T d2zjrk1 90 GGYTRILRVG 99 (113)
T ss_dssp SCCCEEEECC
T ss_pred CCeEEEEECC
Confidence 5799876444
No 6
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.38 E-value=6.5 Score=25.45 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCChhhhHhhHH
Q 026654 161 PTVLEKLCAVLNVNKRSVDRDLD 183 (235)
Q Consensus 161 ~~~l~~l~~~Lgls~~kv~kDL~ 183 (235)
.-..++|++.||+|...|.+|+.
T Consensus 19 ~~s~~eLa~~l~vS~~ti~r~i~ 41 (63)
T d1biaa1 19 FHSGEQLGETLGMSRAAINKHIQ 41 (63)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHH
Confidence 34567899999999999999985
No 7
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=31.61 E-value=22 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.069 Sum_probs=26.0
Q ss_pred cCCCCchhHHHHHHHHHHhcC--CCHHHHHHHHH
Q 026654 67 EGYPSEEDREAIFQAYITALK--EDPEQYRIDAQ 98 (235)
Q Consensus 67 ~GY~pe~~~~~IF~Alc~a~~--~Dp~q~r~dA~ 98 (235)
.||++...|..|+++|.++-+ ++++++-+..+
T Consensus 10 ~GlR~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~ 43 (134)
T d1mzba_ 10 AGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALM 43 (134)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 699999999999999998865 78877766543
No 8
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=28.89 E-value=34 Score=22.24 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=25.2
Q ss_pred cCCCCchhHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 026654 67 EGYPSEEDREAIFQAYITALKE-DPEQYRIDAQKLEE 102 (235)
Q Consensus 67 ~GY~pe~~~~~IF~Alc~a~~~-Dp~q~r~dA~~l~~ 102 (235)
.||||. +.-+|.++|+ .|...+.--.+|++
T Consensus 21 ~G~~Ps------~rei~~~~g~~S~stv~~~l~~Le~ 51 (71)
T d1jhfa1 21 TGMPPT------RAEIAQRLGFRSPNAAEEHLKALAR 51 (71)
T ss_dssp HSSCCC------HHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hCCCCC------HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 399997 6678999999 69899988888875
No 9
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]}
Probab=27.06 E-value=1e+02 Score=21.90 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 026654 59 VTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLE 101 (235)
Q Consensus 59 vt~fd~fm~GY~pe~~~~~IF~Alc~a~~~Dp~q~r~dA~~l~ 101 (235)
-..+.++.+.+... .+. |.+++.+.|+++++||+.-+.-.
T Consensus 73 ~~~i~~~~~~~~~~--~~~-f~~~L~~~g~~~~~~~~~ir~~l 112 (173)
T d1m5ya1 73 DQAIANIAKQNNMT--LDQ-MRSRLAYDGLNYNTYRNQIRKEM 112 (173)
T ss_dssp HHHHHHHHHHTTCC--HHH-HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--HHH-HHHHHHHcCCCHHHHHHHHHHHH
Confidence 33445554444322 222 77888888999999988755433
No 10
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.95 E-value=18 Score=28.87 Aligned_cols=51 Identities=29% Similarity=0.434 Sum_probs=32.3
Q ss_pred cchhhhHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 026654 52 PVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWA 104 (235)
Q Consensus 52 ~lfAlG~vt~fd~fm~GY~p--e~~~~~IF~Alc~a~~~Dp~q~r~dA~~l~~~A 104 (235)
.|||||+ +.|.-++ |.+| ..+...+++.+++.--.-|..+-.+++.|...+
T Consensus 192 DiwSlGv-ilyell~-g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~ 244 (288)
T d1uu3a_ 192 DLWALGC-IIYQLVA-GLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKL 244 (288)
T ss_dssp HHHHHHH-HHHHHHH-SSCSSCCSSHHHHHHHHHTTCCCCCTTCCHHHHHHHHTT
T ss_pred ceehhhH-HHHHHhh-CCCCCCCcCHHHHHHHHHcCCCCCCccCCHHHHHHHHHH
Confidence 4999995 5676666 6665 345667888887754333455555666665543
No 11
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.18 E-value=22 Score=29.26 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=37.1
Q ss_pred cchhhhHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Q 026654 52 PVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQ 107 (235)
Q Consensus 52 ~lfAlG~vt~fd~fm~GY~p--e~~~~~IF~Alc~a~~~Dp~q~r~dA~~l~~~A~~~ 107 (235)
.|||||++ .|..++ |.+| ..+...++..+++..-.-|..+-.++..+....-..
T Consensus 220 DiwSlGvi-lyemlt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~ 275 (350)
T d1rdqe_ 220 DWWALGVL-IYEMAA-GYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQV 275 (350)
T ss_dssp HHHHHHHH-HHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCS
T ss_pred cccchhHH-HHHHHh-CCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhhh
Confidence 49999974 666655 6666 345667888888877666666767777776655433
No 12
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.26 E-value=32 Score=22.96 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCChhhhHhhHHHHHhhHH
Q 026654 162 TVLEKLCAVLNVNKRSVDRDLDVYRNLLS 190 (235)
Q Consensus 162 ~~l~~l~~~Lgls~~kv~kDL~lYrs~Le 190 (235)
..++.+|+.||||..-.+.=..+|+...+
T Consensus 7 ~~I~~~~~~L~L~~~i~~~A~~i~~~~~~ 35 (95)
T d1vola1 7 KEITTMADRINLPRNKVDRTNNLFRQAYE 35 (95)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence 45899999999999988877777776543
No 13
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.59 E-value=1e+02 Score=24.92 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCChhhhH
Q 026654 162 TVLEKLCAVLNVNKRSVD 179 (235)
Q Consensus 162 ~~l~~l~~~Lgls~~kv~ 179 (235)
+...+++..+|-.+.+..
T Consensus 268 ~~~~~~~~yfgEd~~~~~ 285 (332)
T d1v9da_ 268 TLYKELGDYFVFDPKKLS 285 (332)
T ss_dssp HHHHHHHHHTTCCTTTSC
T ss_pred HHHHHHHHHhCCCCCCCC
Confidence 568899999997766544
No 14
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=24.07 E-value=69 Score=22.34 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHhcCCChhhhHhhHHHHHhhHHHHHHHH-----HHHHHHHHHHhhhHH
Q 026654 158 ATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAK-----ELLKEYVDREKKKRE 211 (235)
Q Consensus 158 ~~d~~~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm~QA~-----el~eE~~~~ekKKre 211 (235)
..+|+.-.+|+.. +++-|-+-|+-|...|+.+..+. +-+.+.+..-|+.|.
T Consensus 53 ~s~p~mW~dI~~~---N~~~i~~~l~~~~~~L~~~~~~l~~~D~~~l~~~l~~a~~~R~ 108 (110)
T d2g5ca1 53 KSDPIMWRDIFLE---NKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRM 108 (110)
T ss_dssp CSCHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4578887777653 67888899999999999998885 466777777666654
No 15
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.25 E-value=54 Score=20.35 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=22.1
Q ss_pred HHHhhcCCCCHHHHHHHHHhcCCChhhhH
Q 026654 151 RLLELANATEPTVLEKLCAVLNVNKRSVD 179 (235)
Q Consensus 151 ~LLE~~~~~d~~~l~~l~~~Lgls~~kv~ 179 (235)
...+...-.+.+..+.||+.|||+...|+
T Consensus 17 ~~F~~n~yp~~~~r~~LA~~l~L~~~qV~ 45 (57)
T d2e1oa1 17 KKFETQKYLSPPERKRLAKMLQLSERQVK 45 (57)
T ss_dssp HHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 33344444688999999999999988764
No 16
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=23.21 E-value=12 Score=24.22 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhcCCChhhhHhhHHHHHhhHHHHH
Q 026654 159 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLL 193 (235)
Q Consensus 159 ~d~~~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm~ 193 (235)
.+|..+++|++.||+|.++|.. +.+..|.||.
T Consensus 26 ~~~~tl~eIa~~lgiS~erVrq---i~~~al~kLR 57 (61)
T d1ku3a_ 26 GREHTLEEVGAYFGVTRERIRQ---IENKALRKLK 57 (61)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHH---HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHH---HHHHHHHHHh
Confidence 4567799999999999999975 4556666653
No 17
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=23.20 E-value=31 Score=23.16 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCChhhhHhhHHHHHhhHH
Q 026654 162 TVLEKLCAVLNVNKRSVDRDLDVYRNLLS 190 (235)
Q Consensus 162 ~~l~~l~~~Lgls~~kv~kDL~lYrs~Le 190 (235)
..++++|+.||||..-++.=..+|+...+
T Consensus 7 ~~I~~~~~~L~L~~~i~~~A~~i~k~~~~ 35 (98)
T d1aisb1 7 SELDRITAQLKLPRHVEEEAARLYREAVR 35 (98)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence 35899999999998887777777765543
No 18
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.92 E-value=25 Score=22.91 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhcCCChhhhHhhHHHHHhhHHHHHHHHHHHHH
Q 026654 159 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 201 (235)
Q Consensus 159 ~d~~~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm~QA~el~eE 201 (235)
.|++.|.+|++ |||+.+.+.|=|-.-.+ .-+++|.+-|-+
T Consensus 8 ~d~~~l~~L~~-MGF~~~~a~~AL~~t~n--~~~e~A~~Wl~~ 47 (64)
T d1whca_ 8 AELTALESLIE-MGFPRGRAEKALALTGN--QGIEAAMDWLME 47 (64)
T ss_dssp CCCCHHHHHHT-TTCCHHHHHHHHHHHTS--CCHHHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 47889999996 99999999998844433 125567766544
No 19
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=21.60 E-value=14 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHhcCCChhhhHhhHHHHHhhHHHH
Q 026654 159 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKL 192 (235)
Q Consensus 159 ~d~~~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm 192 (235)
.+|..+++|++.+|+|.++|.. +.+.-|.||
T Consensus 23 ~~~~tl~eI~~~lgiSrerVrq---ie~~al~kL 53 (68)
T d2p7vb1 23 NTDYTLEEVGKQFDVTRERIRQ---IEAKALRKL 53 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHH---HHHHHHHGG
T ss_pred CCcCCHHHHHHHHCCCHHHHHH---HHHHHHHHH
Confidence 3466799999999999999975 344445444
No 20
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.32 E-value=31 Score=22.98 Aligned_cols=37 Identities=8% Similarity=0.216 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHhcCCChhhhHhhHHHHHhhHHHHHHHHHHH
Q 026654 159 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELL 199 (235)
Q Consensus 159 ~d~~~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm~QA~el~ 199 (235)
.+++.+.+|++ |||+.+.+.+=|-.-.+|++ +|.+.+
T Consensus 28 ~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e---~Av~~L 64 (73)
T d1wiva_ 28 IDQSSVDTLLS-FGFAEDVARKALKASGGDIE---KATDWV 64 (73)
T ss_dssp SCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHH---HHHHHH
T ss_pred CCHHHHHHHHh-cCCCHHHHHHHHHHcCCCHH---HHHHHH
Confidence 35788999985 99999999999988777654 455443
No 21
>d1i4aa_ a.65.1.1 (A:) Annexin IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.97 E-value=62 Score=26.41 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=42.7
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHhcCCccccccccCC--cchhHHHHHHHHHHhcCC
Q 026654 67 EGYPSEEDREAIFQAYITALKEDPEQYRIDA--------QKLEEWARGQTASSLVEFPSK--EGEVEGLLKDIAERASGK 136 (235)
Q Consensus 67 ~GY~pe~~~~~IF~Alc~a~~~Dp~q~r~dA--------~~l~~~A~~~s~~~l~~~~~~--~g~~~~~l~~Ia~~~~~~ 136 (235)
.||-|+.|-..|.+| ++..|-|.+.+-+.- +.+...-+.....+|.+.+.+ .|..+..+..+..
T Consensus 2 ~~fd~~~Da~~L~~A-~kg~g~de~~ii~IL~~rs~~qr~~i~~~Y~~~yg~dL~~~L~~e~sG~~~~~l~~l~~----- 75 (309)
T d1i4aa_ 2 SGFNAAEDAQTLRKA-MKGLGTDEDAIINVLAYRSTAQRQEIRTAYKTTIGRDLMDDLKSELSGNFEQVILGMMT----- 75 (309)
T ss_dssp CSCCHHHHHHHHHHH-HSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHS-----
T ss_pred CCCCHHHHHHHHHHH-hhCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHHhCchHHHHHHHHhC-----
Confidence 478888888888887 566666655443221 111112222223333333322 4555665544442
Q ss_pred CCCcchHHHHHHHHHHHh
Q 026654 137 GNFSYSRFFAVGLFRLLE 154 (235)
Q Consensus 137 ~~f~YSRlfAIGLf~LLE 154 (235)
....+.|.-|...|.
T Consensus 76 ---~p~~~dA~~l~~A~k 90 (309)
T d1i4aa_ 76 ---PTVLYDVQELRKAMK 90 (309)
T ss_dssp ---CHHHHHHHHHHHHHS
T ss_pred ---CHHHHHHHHHHHHhc
Confidence 246778888888884
No 22
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.19 E-value=16 Score=22.09 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCChhhhHhhHHHHHhhHH
Q 026654 161 PTVLEKLCAVLNVNKRSVDRDLDVYRNLLS 190 (235)
Q Consensus 161 ~~~l~~l~~~Lgls~~kv~kDL~lYrs~Le 190 (235)
.+.+.+|++ |||+.+.+.+=|.-..+|++
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~N~e 33 (41)
T d1oqya1 5 ETMLTEIMS-MGYERERVVAALRASYNNPH 33 (41)
T ss_dssp HHHHHHHHT-TTCCSHHHHHHHHHSCSSTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCHH
Confidence 355777776 99999999998876666654
No 23
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.15 E-value=21 Score=25.85 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhcCCccc-----cccccCCcchhHHHHHHHHHHhcCCCCCcchHHHHHH
Q 026654 90 PEQYRIDAQKLEEWARGQTASS-----LVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVG 148 (235)
Q Consensus 90 p~q~r~dA~~l~~~A~~~s~~~-----l~~~~~~~g~~~~~l~~Ia~~~~~~~~f~YSRlfAIG 148 (235)
+..+|.-+++|..+|+-.+... ...|+.....+..++..|+.+-.+ -+--|+|++=+|
T Consensus 22 AKelr~~~ErLIt~aK~~~~~~r~~~~~~~~l~~k~~v~KLf~~lapry~~-R~GGYTRI~kl~ 84 (109)
T d2cqma1 22 VDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKD-QTGGYTRMLQIP 84 (109)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHH-SCSCCEEEEEEC
T ss_pred HHHHHHhHHHHHHHhhcCchhHHHHHHhhhhcccHHHHHHHHHHHhHHHhc-CCCCeEEEEecC
Confidence 5788999999999998766643 224666666778888888887753 444788876544
Done!