Query 026657
Match_columns 235
No_of_seqs 106 out of 1117
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 5.3E-48 1.8E-52 320.4 12.2 211 1-218 65-293 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 4.4E-47 1.5E-51 307.9 14.7 216 1-224 15-238 (262)
3 1aua_A Phosphatidylinositol tr 100.0 1.8E-46 6.1E-51 309.3 15.0 219 1-221 37-269 (296)
4 3q8g_A CRAL-TRIO domain-contai 100.0 1.6E-46 5.5E-51 311.6 11.2 218 1-220 46-283 (320)
5 1olm_A SEC14-like protein 2; l 100.0 1.6E-45 5.5E-50 315.6 17.2 217 1-219 19-247 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.6 4.7E-16 1.6E-20 124.3 6.3 139 58-209 3-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.5 1.3E-14 4.6E-19 117.6 5.3 132 64-208 28-162 (290)
8 1otr_A Protein CUE2; protein-p 87.0 1.2 4.2E-05 25.3 4.3 35 4-41 10-44 (49)
9 1wgl_A TOLL-interacting protei 86.9 1.2 4.2E-05 26.4 4.4 35 4-41 15-49 (59)
10 2dhy_A CUE domain-containing p 81.9 3 0.0001 25.4 4.7 35 4-41 24-58 (67)
11 2di0_A Activating signal coint 80.3 1 3.4E-05 27.9 2.1 29 12-40 24-52 (71)
12 2dah_A Ubiquilin-3; UBA domain 76.0 6.3 0.00022 22.8 4.6 28 14-41 21-48 (54)
13 2bwb_A Ubiquitin-like protein 74.8 5.9 0.0002 22.0 4.2 27 13-39 18-44 (46)
14 2dna_A Unnamed protein product 73.6 7.5 0.00026 23.6 4.7 28 14-41 31-58 (67)
15 1wr1_B Ubiquitin-like protein 73.4 6 0.0002 23.3 4.1 27 14-40 29-55 (58)
16 1vej_A Riken cDNA 4931431F19; 68.0 9.3 0.00032 23.7 4.3 27 14-40 41-67 (74)
17 2knz_A Ubiquilin-4; cytoplasm, 67.5 12 0.00039 21.4 4.5 28 13-40 22-49 (53)
18 2cwb_A Chimera of immunoglobul 66.2 9.8 0.00034 25.5 4.5 28 13-40 77-104 (108)
19 2cp8_A NEXT to BRCA1 gene 1 pr 64.1 17 0.00057 21.0 4.6 28 13-40 20-47 (54)
20 1z96_A DNA-damage, UBA-domain 64.0 11 0.00036 19.8 3.7 24 15-38 16-39 (40)
21 1q02_A Sequestosome 1; helical 62.8 8.6 0.00029 21.9 3.1 26 14-39 23-48 (52)
22 2jy5_A Ubiquilin-1; UBA, alter 60.8 16 0.00055 20.7 4.2 26 14-39 24-49 (52)
23 1v92_A NSFL1 cofactor P47; 3-h 57.4 12 0.00041 20.4 3.2 25 14-38 17-41 (46)
24 1ify_A HHR23A, UV excision rep 56.1 15 0.00051 20.6 3.4 26 15-40 20-45 (49)
25 2d9s_A CBL E3 ubiquitin protei 54.5 26 0.00088 20.1 4.2 28 14-41 20-47 (53)
26 1wji_A Tudor domain containing 52.0 25 0.00086 20.9 4.1 27 15-41 21-47 (63)
27 3e21_A HFAF1, FAS-associated f 51.7 15 0.0005 20.4 2.8 22 15-36 18-40 (45)
28 2ooa_A E3 ubiquitin-protein li 51.0 32 0.0011 19.6 4.2 28 14-41 22-49 (52)
29 2dal_A Protein KIAA0794; FAS a 49.7 21 0.00072 21.1 3.6 25 14-38 27-51 (62)
30 2q3l_A Uncharacterized protein 49.4 58 0.002 22.0 7.0 77 97-183 35-111 (126)
31 2g3q_A Protein YBL047C; endocy 48.1 24 0.00082 18.9 3.4 25 15-39 16-40 (43)
32 1veg_A NEDD8 ultimate buster-1 46.8 32 0.0011 21.8 4.2 27 15-41 41-67 (83)
33 2dzl_A Protein FAM100B; UBA-li 46.1 26 0.00089 21.0 3.6 25 14-38 29-53 (66)
34 3sbx_A Putative uncharacterize 45.4 60 0.002 24.0 6.2 63 138-205 121-188 (189)
35 1vg5_A RSGI RUH-014, rhomboid 45.2 25 0.00085 21.7 3.4 25 15-39 41-65 (73)
36 1ufz_A Hypothetical protein BA 44.2 34 0.0012 21.6 3.9 28 14-41 48-75 (83)
37 1ym0_B Fibrinotic enzyme compo 43.7 15 0.0005 17.1 1.6 15 210-224 3-18 (27)
38 1oai_A Nuclear RNA export fact 43.6 42 0.0014 19.6 4.1 30 14-43 19-48 (59)
39 1wgn_A UBAP1, ubiquitin associ 42.0 45 0.0015 19.7 4.0 24 15-38 31-54 (63)
40 2dam_A ETEA protein; KIAA0887, 41.9 28 0.00096 20.9 3.3 25 15-39 32-56 (67)
41 1vdl_A Ubiquitin carboxyl-term 41.9 38 0.0013 20.9 3.7 29 12-40 35-63 (80)
42 2dak_A Ubiquitin carboxyl-term 39.1 48 0.0017 19.4 4.0 27 15-41 21-47 (63)
43 2jp7_A MRNA export factor MEX6 37.3 47 0.0016 19.3 3.6 27 14-40 18-44 (57)
44 4dbg_B Ring finger protein 31; 36.5 67 0.0023 23.0 4.9 39 3-41 48-101 (162)
45 1wiv_A UBP14, ubiquitin-specif 36.2 41 0.0014 20.6 3.4 22 17-38 43-64 (73)
46 3qua_A Putative uncharacterize 35.8 1E+02 0.0035 22.9 6.3 63 138-205 130-197 (199)
47 2oo3_A Protein involved in cat 34.4 20 0.00068 28.5 2.2 31 153-183 233-263 (283)
48 3ct6_A PTS-dependent dihydroxy 32.2 1.2E+02 0.0041 20.7 6.5 44 121-177 59-102 (131)
49 3mvn_A UDP-N-acetylmuramate:L- 31.3 63 0.0022 22.8 4.4 35 121-163 35-69 (163)
50 2cp9_A EF-TS, EF-TSMT, elongat 31.1 34 0.0012 20.4 2.3 21 21-41 28-48 (64)
51 3dct_B Nuclear receptor coacti 30.6 30 0.001 15.3 1.5 13 16-28 4-16 (21)
52 1hp8_A HU-P8; leukemia, cystei 29.6 85 0.0029 19.0 3.9 30 19-48 13-42 (68)
53 3e7l_A Transcriptional regulat 25.9 77 0.0026 18.3 3.4 24 15-38 19-42 (63)
54 1whc_A RSGI RUH-027, UBA/UBX 3 25.9 1.1E+02 0.0036 18.0 4.0 27 15-41 21-48 (64)
55 1umq_A Photosynthetic apparatu 25.8 72 0.0025 19.9 3.3 24 15-38 41-64 (81)
56 1wj7_A Hypothetical protein (R 25.8 68 0.0023 21.2 3.3 28 14-41 51-78 (104)
57 3j20_B 30S ribosomal protein S 25.6 96 0.0033 23.2 4.5 74 150-224 30-108 (202)
58 3u5c_A 40S ribosomal protein S 25.5 70 0.0024 24.9 3.8 71 150-220 35-110 (252)
59 2oo9_A E3 ubiquitin-protein li 24.6 96 0.0033 17.1 3.9 27 15-41 16-42 (46)
60 4hb7_A Dihydropteroate synthas 23.2 2.7E+02 0.0091 21.8 6.8 74 76-157 124-201 (270)
61 1p3q_Q VPS9P, vacuolar protein 23.0 28 0.00095 20.1 0.9 29 12-40 23-51 (54)
62 2dai_A Ubadc1, ubiquitin assoc 21.5 1.2E+02 0.0041 19.0 3.7 19 21-39 33-51 (83)
63 1vi6_A 30S ribosomal protein S 21.3 88 0.003 23.5 3.6 74 150-224 34-112 (208)
64 2ekk_A UBA domain from E3 ubiq 20.3 93 0.0032 16.8 2.7 20 18-38 24-43 (47)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=5.3e-48 Score=320.41 Aligned_cols=211 Identities=16% Similarity=0.338 Sum_probs=184.5
Q ss_pred ChhhhhhhCCCC------------CCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCC-CCCCCCCccccccCCc
Q 026657 1 MRNSVQKLGSST------------GKYGDPTLMRFLIARSMDSEKAARMFVQWQKWRATMVPN-GFIADSEVPDELEPRK 67 (235)
Q Consensus 1 lr~~l~~~~~~~------------~~~~d~~llRfL~~~~~~~~~a~~~l~~~~~wR~~~~~~-~~~~~~~~~~~~~~~~ 67 (235)
||+||+++ ||+ .+.||.+|+|||||++||+++|.+++.++++||+.+... +.++.+++...+..|.
T Consensus 65 LR~wi~~~-p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~ 143 (316)
T 3hx3_A 65 LQEMVQAQ-AASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGY 143 (316)
T ss_dssp HHHHHHHH-HTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTS
T ss_pred HHHHHHhC-CCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCC
Confidence 69999999 664 468999999999999999999999999999999996310 1122233344456676
Q ss_pred c-eecCCCCCCCeEEEEeccccCCCCChHH-HHHHHHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCcCC---cchHHH
Q 026657 68 I-FLQGLTKDGLPLLVIQVRKHFPSKDPLQ-FKKFVVHLLDKTIASSFRGSEVGNEKLTAILDLRQISYKN---VDVRGM 142 (235)
Q Consensus 68 ~-~~~g~d~~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~~ 142 (235)
+ +++|+|++|+||+++++++++++..+.+ +.+++++++|.++.. .+.++.|+++|+|++|+++++ ++++.+
T Consensus 144 ~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~----~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~ 219 (316)
T 3hx3_A 144 PGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLEN----EETQINGFCIIENFKGFTMQQAASLRTSDL 219 (316)
T ss_dssp SEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTS----HHHHHHCEEEEEECTTCCHHHHHHCCHHHH
T ss_pred ccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhc----ccCCcceEEEEEECCCCCHHHhccCChHHH
Confidence 4 5789999999999999999999988888 999999999988765 345678999999999999987 477889
Q ss_pred HHHHHHHHhccccccceeEEEeCChhHHHHHHHhhhccChhhhcceEEecCchhHHHHHhhCCCCCCCcccCCCcC
Q 026657 143 ITGFQFLQAYYPERLAKLYILHMPGFFVSVWRMVSRCLERATLEKIVIVTNEEEMKNFVKDIGEEVLPEEYGGRAK 218 (235)
Q Consensus 143 k~~~~~l~~~yP~~l~~i~ivn~p~~~~~~~~~vk~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~ 218 (235)
+.++.+++.+||++++++||||+|++|.++|+++|+|++++|++||.|++++ .++|.++||+++||++|||+++
T Consensus 220 k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~--~~~L~~~I~~~~LP~eyGG~~~ 293 (316)
T 3hx3_A 220 RKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD--LSGFYQEIDENILPSDFGGTLP 293 (316)
T ss_dssp HHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC--CHHHHHHSCGGGSBGGGTSSBC
T ss_pred HHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC--HHHHHhhCCHhhCcHhhCCCCC
Confidence 9999999999999999999999999999999999999999999999999753 4799999999999999999998
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=4.4e-47 Score=307.88 Aligned_cols=216 Identities=20% Similarity=0.308 Sum_probs=184.8
Q ss_pred ChhhhhhhCC-CCC-CCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCC-CCCCCCCCccccccCCc-ceecCCCCC
Q 026657 1 MRNSVQKLGS-STG-KYGDPTLMRFLIARSMDSEKAARMFVQWQKWRATMVP-NGFIADSEVPDELEPRK-IFLQGLTKD 76 (235)
Q Consensus 1 lr~~l~~~~~-~~~-~~~d~~llRfL~~~~~~~~~a~~~l~~~~~wR~~~~~-~~~~~~~~~~~~~~~~~-~~~~g~d~~ 76 (235)
||+|+++..+ +.+ ..+|.+|+|||||++||+++|.++++++++||+.+.. ...+..+++...+..|. .+++|+|++
T Consensus 15 lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~ 94 (262)
T 1r5l_A 15 LRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPT 94 (262)
T ss_dssp HHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTT
T ss_pred HHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCC
Confidence 6899998853 434 7899999999999999999999999999999999621 01123233444455665 467899999
Q ss_pred CCeEEEEeccccCCCCChHH-HHHHHHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCcCCc---chHHHHHHHHHHHhc
Q 026657 77 GLPLLVIQVRKHFPSKDPLQ-FKKFVVHLLDKTIASSFRGSEVGNEKLTAILDLRQISYKNV---DVRGMITGFQFLQAY 152 (235)
Q Consensus 77 g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~---~~~~~k~~~~~l~~~ 152 (235)
|+||+++++++++++..+.+ +.++.++++|.++.. .+.++.|+++|+|++|++++++ +++.++.++++++.+
T Consensus 95 GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~----~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~ 170 (262)
T 1r5l_A 95 GSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQE----VETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDS 170 (262)
T ss_dssp CCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTS----HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhC----hhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhh
Confidence 99999999999999888777 999999999987665 2334679999999999999885 678899999999999
Q ss_pred cccccceeEEEeCChhHHHHHHHhhhccChhhhcceEEecCchhHHHHHhhCCCCCCCcccCCCcCceeccc
Q 026657 153 YPERLAKLYILHMPGFFVSVWRMVSRCLERATLEKIVIVTNEEEMKNFVKDIGEEVLPEEYGGRAKLVAVQD 224 (235)
Q Consensus 153 yP~~l~~i~ivn~p~~~~~~~~~vk~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~~~~~ 224 (235)
||++++++||||+|+++.++|+++|||++++|++||+|+++ ++.+.|.++|| ++||++|||++. ++++
T Consensus 171 yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG~~~--~~~~ 238 (262)
T 1r5l_A 171 FPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGGEEF--SMED 238 (262)
T ss_dssp SSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTCSSC--CHHH
T ss_pred CChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCCCCC--CHHH
Confidence 99999999999999999999999999999999999999985 56789999999 999999999997 5555
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.8e-46 Score=309.30 Aligned_cols=219 Identities=25% Similarity=0.381 Sum_probs=184.8
Q ss_pred ChhhhhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCCc--cccccC-CcceecCCCCCC
Q 026657 1 MRNSVQKLGSSTGKYGDPTLMRFLIARSMDSEKAARMFVQWQKWRATMVPNGFIADSEV--PDELEP-RKIFLQGLTKDG 77 (235)
Q Consensus 1 lr~~l~~~~~~~~~~~d~~llRfL~~~~~~~~~a~~~l~~~~~wR~~~~~~~~~~~~~~--~~~~~~-~~~~~~g~d~~g 77 (235)
||+||+++ ++....||.+|+|||||++||+++|.++++++++||+.+++++.+...+. .+.+.. ...+++|+|++|
T Consensus 37 lr~~l~~~-~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~G 115 (296)
T 1aua_A 37 LRKLLEDA-GFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDG 115 (296)
T ss_dssp HHHHHHHT-TCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTS
T ss_pred HHHHHHhc-CCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCC
Confidence 68999998 66668999999999999999999999999999999999876543222111 122222 234688999999
Q ss_pred CeEEEEeccccCCCC----ChHH-HHHHHHHHHHHHHHhhcc----CCCCCCceEEEEEeCCCCCcCCcc--hHHHHHHH
Q 026657 78 LPLLVIQVRKHFPSK----DPLQ-FKKFVVHLLDKTIASSFR----GSEVGNEKLTAILDLRQISYKNVD--VRGMITGF 146 (235)
Q Consensus 78 ~~v~~~~~~~~~~~~----~~~~-~~~~~~~~~E~~~~~~~~----~~~~~~~~~~~i~D~~~~~~~~~~--~~~~k~~~ 146 (235)
+||+++++++++++. .+.+ +.+++++.+|.++...+. ..+..++++++|+|++|+++++++ .+.++.++
T Consensus 116 rpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~ 195 (296)
T 1aua_A 116 RPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREAS 195 (296)
T ss_dssp CEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999987643 3566 899999999987764321 124567899999999999999876 67899999
Q ss_pred HHHHhccccccceeEEEeCChhHHHHHHHhhhccChhhhcceEEecCchhHHHHHhhCCCCCCCcccCCCcCcee
Q 026657 147 QFLQAYYPERLAKLYILHMPGFFVSVWRMVSRCLERATLEKIVIVTNEEEMKNFVKDIGEEVLPEEYGGRAKLVA 221 (235)
Q Consensus 147 ~~l~~~yP~~l~~i~ivn~p~~~~~~~~~vk~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~~ 221 (235)
++++.+||+|++++||||+|++|.++|+++|+||+++|++||+|+++ ++.+.|.++||+++||++|||++++..
T Consensus 196 ~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~~ 269 (296)
T 1aua_A 196 YISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPAENLPVKFGGKSEVDE 269 (296)
T ss_dssp HHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCSSSSBGGGTSCBCCCG
T ss_pred HHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCHhhCcHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999986 567899999999999999999998665
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.6e-46 Score=311.60 Aligned_cols=218 Identities=29% Similarity=0.409 Sum_probs=184.1
Q ss_pred ChhhhhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc---------ccccCCcceec
Q 026657 1 MRNSVQKLGSSTGKYGDPTLMRFLIARSMDSEKAARMFVQWQKWRATMVPNGFIADSEVP---------DELEPRKIFLQ 71 (235)
Q Consensus 1 lr~~l~~~~~~~~~~~d~~llRfL~~~~~~~~~a~~~l~~~~~wR~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 71 (235)
||+||+++ ++....||.+|+|||||++||+++|.++++++++||+.+++++.+...+.. ...+.+..+++
T Consensus 46 lR~~l~~~-~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~ 124 (320)
T 3q8g_A 46 FRSILLEK-NYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYH 124 (320)
T ss_dssp HHHHHHHT-TCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHhc-CCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceec
Confidence 68999999 666689999999999999999999999999999999998765322211111 11233456789
Q ss_pred CCCCCCCeEEEEeccccCCCC----ChHH-HHHHHHHHHHHHHHhhc----cCCCCCCceEEEEEeCCCCCcCCcc--hH
Q 026657 72 GLTKDGLPLLVIQVRKHFPSK----DPLQ-FKKFVVHLLDKTIASSF----RGSEVGNEKLTAILDLRQISYKNVD--VR 140 (235)
Q Consensus 72 g~d~~g~~v~~~~~~~~~~~~----~~~~-~~~~~~~~~E~~~~~~~----~~~~~~~~~~~~i~D~~~~~~~~~~--~~ 140 (235)
|+|++||||+++++++++++. .+.+ +++++++.+|.++...+ +..+..++++++|+|++|++++++. .+
T Consensus 125 g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~ 204 (320)
T 3q8g_A 125 HVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLS 204 (320)
T ss_dssp EECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHH
T ss_pred CCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 999999999999999988764 2456 88999999998765322 1134457889999999999999875 67
Q ss_pred HHHHHHHHHHhccccccceeEEEeCChhHHHHHHHhhhccChhhhcceEEecCchhHHHHHhhCCCCCCCcccCCCcCce
Q 026657 141 GMITGFQFLQAYYPERLAKLYILHMPGFFVSVWRMVSRCLERATLEKIVIVTNEEEMKNFVKDIGEEVLPEEYGGRAKLV 220 (235)
Q Consensus 141 ~~k~~~~~l~~~yP~~l~~i~ivn~p~~~~~~~~~vk~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~ 220 (235)
.++.++.+++.+||+|++++||||+|+++.++|+++|+||+++|++||+|+++ ++.++|.++||+++||++|||+++|.
T Consensus 205 ~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~ 283 (320)
T 3q8g_A 205 YIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQIPIENLPVKYGGTSVLH 283 (320)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHHSCGGGSBGGGTSCBCCS
T ss_pred HHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhhCChhhCChhhCCCCCCC
Confidence 88999999999999999999999999999999999999999999999999985 56789999999999999999999974
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.6e-45 Score=315.60 Aligned_cols=217 Identities=21% Similarity=0.294 Sum_probs=186.3
Q ss_pred ChhhhhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccccC-CcceecCCCCCCCe
Q 026657 1 MRNSVQKLGSSTGKYGDPTLMRFLIARSMDSEKAARMFVQWQKWRATMVPNGFIADSEVPDELEP-RKIFLQGLTKDGLP 79 (235)
Q Consensus 1 lr~~l~~~~~~~~~~~d~~llRfL~~~~~~~~~a~~~l~~~~~wR~~~~~~~~~~~~~~~~~~~~-~~~~~~g~d~~g~~ 79 (235)
||+||++..++++..+|.+|+|||||++||+++|.++|+++++||+.+++++.+. ....+.++. ...+++|.|++|||
T Consensus 19 lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g~Dk~Grp 97 (403)
T 1olm_A 19 FRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCGYDLDGCP 97 (403)
T ss_dssp HHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEEECTTSCE
T ss_pred HHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeeccCCCcCE
Confidence 6899999977778899999999999999999999999999999999987654322 111111221 12346899999999
Q ss_pred EEEEeccccCCC----CChHH-HHHHHHHHHHHHHHhhcc---CCCCCCceEEEEEeCCCCCcCCc---chHHHHHHHHH
Q 026657 80 LLVIQVRKHFPS----KDPLQ-FKKFVVHLLDKTIASSFR---GSEVGNEKLTAILDLRQISYKNV---DVRGMITGFQF 148 (235)
Q Consensus 80 v~~~~~~~~~~~----~~~~~-~~~~~~~~~E~~~~~~~~---~~~~~~~~~~~i~D~~~~~~~~~---~~~~~k~~~~~ 148 (235)
|+++++++++++ ..+.+ +.+++++++|.++..+.. ..+.++.++++|+|++|++++++ .++.++.++++
T Consensus 98 V~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~ 177 (403)
T 1olm_A 98 VWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCM 177 (403)
T ss_dssp EEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHH
T ss_pred EEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHH
Confidence 999999998876 35677 999999999999887531 12345789999999999999987 56789999999
Q ss_pred HHhccccccceeEEEeCChhHHHHHHHhhhccChhhhcceEEecCchhHHHHHhhCCCCCCCcccCCCcCc
Q 026657 149 LQAYYPERLAKLYILHMPGFFVSVWRMVSRCLERATLEKIVIVTNEEEMKNFVKDIGEEVLPEEYGGRAKL 219 (235)
Q Consensus 149 l~~~yP~~l~~i~ivn~p~~~~~~~~~vk~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~ 219 (235)
++.+||+|++++||||+|++|.++|+++||||+++|++||+|+++ ++.+.|.++||+++||++|||++.+
T Consensus 178 lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yGG~~~~ 247 (403)
T 1olm_A 178 FEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTMTD 247 (403)
T ss_dssp HHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSSBCC
T ss_pred HHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhCCCcCC
Confidence 999999999999999999999999999999999999999999986 7778999999999999999999985
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.61 E-value=4.7e-16 Score=124.34 Aligned_cols=139 Identities=13% Similarity=0.142 Sum_probs=115.2
Q ss_pred CccccccCCcceecCCCCCCCeEEEEeccccCCCCChHH-HHHHHHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCcCC
Q 026657 58 EVPDELEPRKIFLQGLTKDGLPLLVIQVRKHFPSKDPLQ-FKKFVVHLLDKTIASSFRGSEVGNEKLTAILDLRQISYKN 136 (235)
Q Consensus 58 ~~~~~~~~~~~~~~g~d~~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~ 136 (235)
++.+.-+.+.+|..|.|++|+||+++.+++......+.| ++.+++..++.+.. ..+.+|+|+++.+..+
T Consensus 3 d~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~~----------~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 3 EFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYA----------KPYEIVVDLTHTGPSN 72 (256)
T ss_dssp TTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTT----------SCEEEEEECTTCCGGG
T ss_pred chhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhcC----------CCeEEEEECCCCCccc
Confidence 344444456777889999999999999999988888888 77777777775544 3699999999999865
Q ss_pred -cchHHHHHHHHHHHhccccccceeEEEeCChhHHHHHHHh-hhccChhhhcceEEecCchhHHHHHhhCCCCCC
Q 026657 137 -VDVRGMITGFQFLQAYYPERLAKLYILHMPGFFVSVWRMV-SRCLERATLEKIVIVTNEEEMKNFVKDIGEEVL 209 (235)
Q Consensus 137 -~~~~~~k~~~~~l~~~yP~~l~~i~ivn~p~~~~~~~~~v-k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~L 209 (235)
.+.++++.+.+++...|..+++++||+||+++++..++.+ +++.+.+..+|+.++++ .++|.++|+.++|
T Consensus 73 ~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s---l~eL~~~i~~~~L 144 (256)
T 3pg7_A 73 RFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQQ 144 (256)
T ss_dssp CCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS---TTGGGGTSCGGGC
T ss_pred CCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC---HHHHHhhcCHHHc
Confidence 5688999999999999999999999999999999776654 55666688899999987 6899999977654
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=117.59 Aligned_cols=132 Identities=13% Similarity=0.150 Sum_probs=102.6
Q ss_pred cCCcceecCCCCCCCeEEEEeccccCCCCChHH-HHHHHHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCcCC-cchHH
Q 026657 64 EPRKIFLQGLTKDGLPLLVIQVRKHFPSKDPLQ-FKKFVVHLLDKTIASSFRGSEVGNEKLTAILDLRQISYKN-VDVRG 141 (235)
Q Consensus 64 ~~~~~~~~g~d~~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~-~~~~~ 141 (235)
..+.+|..|.|++|+||+++.+++.+....+.| ++.+++..++.+.. ..+++|+|+++++..+ .+.++
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~~----------~~y~lV~D~T~~~~~n~p~~~~ 97 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYA----------KPYEIVVDLTHTGPSNRFKTDF 97 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTT----------SCEEEEEECTTCCGGGCCCHHH
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhcC----------CCeEEEEEcCCCCccCCChHHH
Confidence 334555668999999999999999998888888 77777777665443 3799999999999865 57889
Q ss_pred HHHHHHHHHhccccccceeEEEeCChhHHHHH-HHhhhccChhhhcceEEecCchhHHHHHhhCCCCC
Q 026657 142 MITGFQFLQAYYPERLAKLYILHMPGFFVSVW-RMVSRCLERATLEKIVIVTNEEEMKNFVKDIGEEV 208 (235)
Q Consensus 142 ~k~~~~~l~~~yP~~l~~i~ivn~p~~~~~~~-~~vk~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~ 208 (235)
++.+.+++...|+.+++++||+|||++++..+ ...+++.+.+..+|+.++++. ..|.+++++++
T Consensus 98 l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~---~~L~~~i~~~~ 162 (290)
T 3peg_A 98 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP---GKLAEHIEHEQ 162 (290)
T ss_dssp HGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS---CC---------
T ss_pred HHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH---HHHHhhCCHHH
Confidence 99999999999999999999999999998755 466777888889999999873 55888887764
No 8
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=87.01 E-value=1.2 Score=25.34 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=29.7
Q ss_pred hhhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 4 SVQKLGSSTGKYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 4 ~l~~~~~~~~~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
.|+++ -|..+...+.+-|.++++|+++|...|.+.
T Consensus 10 ~L~EM---FP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 10 ILMDM---FPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHH---CSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHH---CCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45666 467899999999999999999999988764
No 9
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=86.86 E-value=1.2 Score=26.41 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=29.6
Q ss_pred hhhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 4 SVQKLGSSTGKYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 4 ~l~~~~~~~~~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
.|+++ -|..+...+..-|+++++|++.|...|.+.
T Consensus 15 ~L~em---FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 15 AIQDM---FPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHH---CSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHH---CCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45555 478999999999999999999999988653
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.88 E-value=3 Score=25.42 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=29.7
Q ss_pred hhhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 4 SVQKLGSSTGKYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 4 ~l~~~~~~~~~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
.|+++ -|..+...|..-|+++++|++.|.+.|.+.
T Consensus 24 ~L~~M---FP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 24 DFKTM---FPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHH---CSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHH---CCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 35555 478999999999999999999999988765
No 11
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=80.27 E-value=1 Score=27.85 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=26.7
Q ss_pred CCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 12 TGKYGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 12 ~~~~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
.|++++.++.+.|..+++|+|++...+-+
T Consensus 24 fPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 24 LPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 57899999999999999999999998876
No 12
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=75.97 E-value=6.3 Score=22.77 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
..++...++-|+++++|+++|.+.|...
T Consensus 21 F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 21 FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4455556999999999999999888654
No 13
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=74.79 E-value=5.9 Score=22.02 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHhcCCCHHHHHHHHH
Q 026657 13 GKYGDPTLMRFLIARSMDSEKAARMFV 39 (235)
Q Consensus 13 ~~~~d~~llRfL~~~~~~~~~a~~~l~ 39 (235)
+..++...++-|+++++|+++|.+.|-
T Consensus 18 GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 18 GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345566679999999999999998764
No 14
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=73.55 E-value=7.5 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
..++..-++-|+++++|+++|++.|.+.
T Consensus 31 F~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 31 FVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666999999999999999877653
No 15
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=73.36 E-value=6 Score=23.28 Aligned_cols=27 Identities=7% Similarity=-0.071 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
..++...++-|+++++|+++|.+.|..
T Consensus 29 F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456667799999999999999988764
No 16
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=68.04 E-value=9.3 Score=23.71 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
..++...++-|++.++|+++|.+.|..
T Consensus 41 F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 41 FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456677799999999999999987753
No 17
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=67.53 E-value=12 Score=21.45 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 13 GKYGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 13 ~~~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
+..++....+-|+++++|+++|.+.|.+
T Consensus 22 GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 22 GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3447778899999999999999987754
No 18
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=66.20 E-value=9.8 Score=25.50 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 13 GKYGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 13 ~~~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
+..++...++-|+++++|+++|.+.|.+
T Consensus 77 GF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 77 GIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456678899999999999999998864
No 19
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.12 E-value=17 Score=21.01 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=23.8
Q ss_pred CCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 13 GKYGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 13 ~~~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
+..|...=.+-|+.+++|+++|...|..
T Consensus 20 GF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 20 GFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp TCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4677888899999999999999887754
No 20
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=63.96 E-value=11 Score=19.81 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=18.6
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMF 38 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l 38 (235)
.+.....+.|+++++|++.|...+
T Consensus 16 f~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 16 FDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 455666888999999999987654
No 21
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=62.78 E-value=8.6 Score=21.94 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFV 39 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~ 39 (235)
...-.+|-|.|.+.++|+.+|.+.|.
T Consensus 23 ~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 23 SDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred CccccHHHHHHHHccCCHHHHHHHhh
Confidence 45667899999999999999998874
No 22
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=60.77 E-value=16 Score=20.75 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=19.9
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFV 39 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~ 39 (235)
..++....+-|+++++|+++|.+.|.
T Consensus 24 F~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 24 FLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34677778888888888888887663
No 23
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=57.39 E-value=12 Score=20.40 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=20.9
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMF 38 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l 38 (235)
..+......||.+++||++.|...+
T Consensus 17 g~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 17 GAEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567888999999999999998655
No 24
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.09 E-value=15 Score=20.57 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=21.3
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
.+.....+-|+++++|+++|.+.|.+
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 57778888999999999999877654
No 25
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.53 E-value=26 Score=20.08 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
-.+.....|-|...+.|++.|...++++
T Consensus 20 GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 20 GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3677788899999999999999998875
No 26
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.96 E-value=25 Score=20.87 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=19.4
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
.+.....+-|+++++|+++|..-|..+
T Consensus 21 F~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 21 FSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 455566778888888888887766554
No 27
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=51.71 E-value=15 Score=20.36 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=17.8
Q ss_pred CCh-HHHHHHHHhcCCCHHHHHH
Q 026657 15 YGD-PTLMRFLIARSMDSEKAAR 36 (235)
Q Consensus 15 ~~d-~~llRfL~~~~~~~~~a~~ 36 (235)
.+| ..-..||.+++||++.|..
T Consensus 18 ~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 18 IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred CCCHHHHHHHHHHcCCcHHHHHH
Confidence 344 6778899999999999864
No 28
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=50.96 E-value=32 Score=19.58 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.6
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
-.+....++-|+..+.|++-|...+.++
T Consensus 22 GFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 22 GYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3677788899999999999999888775
No 29
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.65 E-value=21 Score=21.06 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMF 38 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l 38 (235)
..++.....||.+++||++.|...+
T Consensus 27 g~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 27 GASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3557788899999999999998665
No 30
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=49.44 E-value=58 Score=22.03 Aligned_cols=77 Identities=9% Similarity=0.208 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCcCCcchHHHHHHHHHHHhccccccceeEEEeCChhHHHHHHHh
Q 026657 97 FKKFVVHLLDKTIASSFRGSEVGNEKLTAILDLRQISYKNVDVRGMITGFQFLQAYYPERLAKLYILHMPGFFVSVWRMV 176 (235)
Q Consensus 97 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~k~~~~~l~~~yP~~l~~i~ivn~p~~~~~~~~~v 176 (235)
+.. +.-.+|..+.. .....+.+++|+++ +..+++..+..-++.-..| -...+++=||--+.+.+.+.++.
T Consensus 35 ~~~-l~~~l~~~l~~------~~~~~i~ll~~~~~--f~G~~~~a~~~d~k~~~~h-~~~~~RiAvV~d~~W~~~~~~~~ 104 (126)
T 2q3l_A 35 YEQ-MTPLLESALAG------IKTPEIVALIDITE--LDGLSLHAAWDDLKLGLKH-GKEFKRVAIIGQGELQEWATRVA 104 (126)
T ss_dssp HHH-HHHHHHHHTTT------CCSSCEEEEEEEEE--EEEECHHHHHHHHHHHHHH-GGGEEEEEEECCSHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHh------CCCceEEEEEEecC--CCCCCHHHHHHHHHhhhhH-HhcCCEEEEEcChHHHHHHHHHH
Confidence 554 66666655554 22223777777754 3334454444333322233 37789999999999999999999
Q ss_pred hhccChh
Q 026657 177 SRCLERA 183 (235)
Q Consensus 177 k~~l~~~ 183 (235)
.+|++-.
T Consensus 105 ~~~~~~e 111 (126)
T 2q3l_A 105 NWFTPGE 111 (126)
T ss_dssp HHHCSSE
T ss_pred hhccCCc
Confidence 9986653
No 31
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=48.07 E-value=24 Score=18.88 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=19.3
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMFV 39 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l~ 39 (235)
.+.....+-|+++++|+++|..-|.
T Consensus 16 F~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 16 FTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4566677888888999999887654
No 32
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.81 E-value=32 Score=21.79 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=14.9
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
.+.....+-|+++++|+++|.+-|..+
T Consensus 41 F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 41 FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344455556666666666665555443
No 33
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.07 E-value=26 Score=21.03 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMF 38 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l 38 (235)
..++.....||.+++||++.|...+
T Consensus 29 g~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 29 GCAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4577778899999999999997665
No 34
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=45.43 E-value=60 Score=23.96 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHhccccccceeEEEeCChhHHHHHHHhh-----hccChhhhcceEEecCchhHHHHHhhCC
Q 026657 138 DVRGMITGFQFLQAYYPERLAKLYILHMPGFFVSVWRMVS-----RCLERATLEKIVIVTNEEEMKNFVKDIG 205 (235)
Q Consensus 138 ~~~~~k~~~~~l~~~yP~~l~~i~ivn~p~~~~~~~~~vk-----~~l~~~~~~ki~~~~~~~~~~~L~~~i~ 205 (235)
+++-+...+...|...- -+.+.++|..-+.+.+..+++ -|+++...+.+.+..+ .+++.+.+.
T Consensus 121 TLdElfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~---~ee~~~~l~ 188 (189)
T 3sbx_A 121 TLDELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN---LDDALQACA 188 (189)
T ss_dssp HHHHHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS---HHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC---HHHHHHHhc
Confidence 35555555555566542 268999999766666665543 3788888899999987 467766654
No 35
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=45.23 E-value=25 Score=21.66 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=17.0
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMFV 39 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l~ 39 (235)
.+.....+-|+++++|+++|.+.|.
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4566666777777777777766554
No 36
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=44.20 E-value=34 Score=21.62 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
-.++..|.+-...++||+++|...+.+.
T Consensus 48 sV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 48 AVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 5889999999999999999999988664
No 37
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=43.66 E-value=15 Score=17.13 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=10.1
Q ss_pred Cccc-CCCcCceeccc
Q 026657 210 PEEY-GGRAKLVAVQD 224 (235)
Q Consensus 210 P~~~-GG~~~~~~~~~ 224 (235)
|..| ||.|.....+|
T Consensus 3 pvwypggqcgvsqysd 18 (27)
T 1ym0_B 3 PVWYPGGQCGVSQYSD 18 (27)
T ss_dssp CCSCTTSCCSCCSSTT
T ss_pred ceeccCCcccceeccc
Confidence 3444 88888766666
No 38
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=43.55 E-value=42 Score=19.59 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQWQK 43 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~~~~ 43 (235)
.++..+=.++|..++||.++|.+...+-.+
T Consensus 19 gmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 19 GMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 567788899999999999999998877543
No 39
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.00 E-value=45 Score=19.75 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=16.7
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMF 38 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l 38 (235)
.++....+-|++.+.|+|+|++=|
T Consensus 31 Fs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 31 YSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp CCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 456667777777777777776543
No 40
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.91 E-value=28 Score=20.92 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=19.7
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMFV 39 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l~ 39 (235)
.+...-..||..++||++.|...+-
T Consensus 32 ~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 32 ESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4566778899999999999876653
No 41
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.88 E-value=38 Score=20.88 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=24.8
Q ss_pred CCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 12 TGKYGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 12 ~~~~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
++..|-.+|..-|.+.++|+.+|...+-+
T Consensus 35 TGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 35 TGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp SCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred hCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 46778889999999999999999987753
No 42
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.10 E-value=48 Score=19.45 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=18.3
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
.+.....+-|+++++|+++|..-|.++
T Consensus 21 F~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 21 FSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345556677777777777777766654
No 43
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=37.34 E-value=47 Score=19.26 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=24.1
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
.++-.+=.++|..++||.++|.....+
T Consensus 18 ~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 18 KLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567788899999999999999998877
No 44
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=36.54 E-value=67 Score=23.02 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=30.5
Q ss_pred hhhhhhCCC---------------CCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 3 NSVQKLGSS---------------TGKYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 3 ~~l~~~~~~---------------~~~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
+||+++.|+ ....+....-+-++.+++|+++|.......
T Consensus 48 ~WLk~ewp~ll~~V~~la~~~~~~~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~ 101 (162)
T 4dbg_B 48 QWLRSELPYVLEMVAELAGQQDPGLGAFSCQEARRAWLDRHGNLDEAVEECVRT 101 (162)
T ss_dssp HHHHHHSCSHHHHHHHHHHHHCGGGCCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHccCChHHHHHHHHHH
Confidence 577777777 346777888899999999999998876544
No 45
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.22 E-value=41 Score=20.56 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=10.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHH
Q 026657 17 DPTLMRFLIARSMDSEKAARMF 38 (235)
Q Consensus 17 d~~llRfL~~~~~~~~~a~~~l 38 (235)
.....+-|+++++|+++|..-|
T Consensus 43 ~~~a~~AL~~t~~nve~Ave~L 64 (73)
T 1wiv_A 43 EDVARKALKASGGDIEKATDWV 64 (73)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 3333444555555555554433
No 46
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=35.79 E-value=1e+02 Score=22.86 Aligned_cols=63 Identities=10% Similarity=0.158 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHhccccccceeEEEeCChhHHHHHHHhhh-----ccChhhhcceEEecCchhHHHHHhhCC
Q 026657 138 DVRGMITGFQFLQAYYPERLAKLYILHMPGFFVSVWRMVSR-----CLERATLEKIVIVTNEEEMKNFVKDIG 205 (235)
Q Consensus 138 ~~~~~k~~~~~l~~~yP~~l~~i~ivn~p~~~~~~~~~vk~-----~l~~~~~~ki~~~~~~~~~~~L~~~i~ 205 (235)
+++-+...+...|.... -+.+.++|..-+.+.++.+++. |+++...+.+.+..+ .+++.+.+.
T Consensus 130 TldEl~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~---~~e~~~~l~ 197 (199)
T 3qua_A 130 TLEEFFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDN---VEAALEACA 197 (199)
T ss_dssp HHHHHHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEESS---HHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeCC---HHHHHHHHh
Confidence 35555566666666653 2589999987677777776543 667777888999987 466666664
No 47
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=34.44 E-value=20 Score=28.46 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=22.5
Q ss_pred cccccceeEEEeCChhHHHHHHHhhhccChh
Q 026657 153 YPERLAKLYILHMPGFFVSVWRMVSRCLERA 183 (235)
Q Consensus 153 yP~~l~~i~ivn~p~~~~~~~~~vk~~l~~~ 183 (235)
+...-..++||||||-+....+-+-++|.+.
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHH
Confidence 4445567999999999987777666665543
No 48
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=32.19 E-value=1.2e+02 Score=20.70 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=26.5
Q ss_pred ceEEEEEeCCCCCcCCcchHHHHHHHHHHHhccccccceeEEEeCChhHHHHHHHhh
Q 026657 121 EKLTAILDLRQISYKNVDVRGMITGFQFLQAYYPERLAKLYILHMPGFFVSVWRMVS 177 (235)
Q Consensus 121 ~~~~~i~D~~~~~~~~~~~~~~k~~~~~l~~~yP~~l~~i~ivn~p~~~~~~~~~vk 177 (235)
.++.++.|+ |-+..+ .. ..+.. .. .++.++|.|.+..++...+.
T Consensus 59 dgVlvltDL-Ggsp~N--~~-----~al~~-~~----~~v~viNlPmvega~~aa~~ 102 (131)
T 3ct6_A 59 DNLLTFFDL-GSARMN--LD-----LVSEM-TD----KELTIFNVPLIEGAYTASAL 102 (131)
T ss_dssp SEEEEEESS-GGGHHH--HH-----HHHHT-CS----SEEEECCSCHHHHHHHHHHH
T ss_pred CCEEEEEeC-CCChHH--HH-----HHHHh-cC----CCEEEEEhhHHHHHHHHHHH
Confidence 799999999 522221 11 11111 11 37888899999777765543
No 49
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=31.34 E-value=63 Score=22.83 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=25.8
Q ss_pred ceEEEEEeCCCCCcCCcchHHHHHHHHHHHhccccccceeEEE
Q 026657 121 EKLTAILDLRQISYKNVDVRGMITGFQFLQAYYPERLAKLYIL 163 (235)
Q Consensus 121 ~~~~~i~D~~~~~~~~~~~~~~k~~~~~l~~~yP~~l~~i~iv 163 (235)
.++++|.|+.- +++.++..++.+...||++ ++++|
T Consensus 35 ~g~~vi~DyaH------nP~si~a~l~al~~~~~~~--riivv 69 (163)
T 3mvn_A 35 NNITVYDDFAH------HPTAITATIDALRAKVGQQ--RILAV 69 (163)
T ss_dssp TTEEEEEECCC------SHHHHHHHHHHHHHHHTTS--CEEEE
T ss_pred CCcEEEEcCCC------CHHHHHHHHHHHHHhcCCC--cEEEE
Confidence 46788999543 5888899999998888863 55544
No 50
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=31.06 E-value=34 Score=20.44 Aligned_cols=21 Identities=14% Similarity=-0.043 Sum_probs=16.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 026657 21 MRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 21 lRfL~~~~~~~~~a~~~l~~~ 41 (235)
-.-|..+++|+++|...|++.
T Consensus 28 KkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 28 KKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHH
Confidence 455778899999999998765
No 51
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=30.65 E-value=30 Score=15.34 Aligned_cols=13 Identities=31% Similarity=0.738 Sum_probs=9.9
Q ss_pred ChHHHHHHHHhcC
Q 026657 16 GDPTLMRFLIARS 28 (235)
Q Consensus 16 ~d~~llRfL~~~~ 28 (235)
-|..|+|||-..+
T Consensus 4 kdhqllrylldkd 16 (21)
T 3dct_B 4 KDHQLLRYLLDKD 16 (26)
T ss_pred hHHHHHHHHHccc
Confidence 4778999997654
No 52
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=29.58 E-value=85 Score=18.97 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Q 026657 19 TLMRFLIARSMDSEKAARMFVQWQKWRATM 48 (235)
Q Consensus 19 ~llRfL~~~~~~~~~a~~~l~~~~~wR~~~ 48 (235)
-+...|..++||.++-...+..+.+.++++
T Consensus 13 aiQ~CL~~N~yd~skCq~~id~L~eCc~~~ 42 (68)
T 1hp8_A 13 EIQKCLQANSYMESKCQAVIQELRKCCAQY 42 (68)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999886
No 53
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.90 E-value=77 Score=18.30 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=20.7
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMF 38 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l 38 (235)
....++.+-|..+++|+.+|++.+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 356688899999999999999988
No 54
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.89 E-value=1.1e+02 Score=18.04 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=15.3
Q ss_pred CChHHHHHHHHhc-CCCHHHHHHHHHHH
Q 026657 15 YGDPTLMRFLIAR-SMDSEKAARMFVQW 41 (235)
Q Consensus 15 ~~d~~llRfL~~~-~~~~~~a~~~l~~~ 41 (235)
.+.....+-|+++ +.|++.|..-|.++
T Consensus 21 F~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 21 FPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 3445556666666 46666665555433
No 55
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=25.80 E-value=72 Score=19.88 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=20.3
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMF 38 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l 38 (235)
....+|.+-|..+++|+.+|++.+
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 345678889999999999999987
No 56
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.80 E-value=68 Score=21.20 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=20.1
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 14 KYGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 14 ~~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
..+......-|..+++|+++|...|.+-
T Consensus 51 G~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 51 GKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3556667777888888888887776543
No 57
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.64 E-value=96 Score=23.17 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=43.1
Q ss_pred HhccccccceeEEEeCChhHHHHHHHhhhccChhhhcceEEecCchhH----HHHHhhCCCCCCCcc-cCCCcCceeccc
Q 026657 150 QAYYPERLAKLYILHMPGFFVSVWRMVSRCLERATLEKIVIVTNEEEM----KNFVKDIGEEVLPEE-YGGRAKLVAVQD 224 (235)
Q Consensus 150 ~~~yP~~l~~i~ivn~p~~~~~~~~~vk~~l~~~~~~ki~~~~~~~~~----~~L~~~i~~~~LP~~-~GG~~~~~~~~~ 224 (235)
+.-|..|-+.+||||.-.....+-...+ ++......+|-|+++.+.. .+..+..+...+-.. .||+.....++.
T Consensus 30 ~YIy~~r~~Gi~IIdL~kT~~~L~~A~~-~i~~~~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~ 108 (202)
T 3j20_B 30 KFIYRVRQDGLYVLDVRKTDERLKVAGK-FLAKFEPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKN 108 (202)
T ss_dssp GGEEEECTTSCEEECHHHHHHHHHHHHH-HHHHSCSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSS
T ss_pred ccEeeeeCCCCEEECHHHHHHHHHHHHH-HHHhhCCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHh
Confidence 5567778789999997654433322222 2222245789999874322 234444555555554 499887654443
No 58
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=25.52 E-value=70 Score=24.86 Aligned_cols=71 Identities=8% Similarity=0.055 Sum_probs=39.0
Q ss_pred HhccccccceeEEEeCChhHHHHHHHhhhccChhhhcceEEecCchhHH----HHHhhCCCCCCCc-ccCCCcCce
Q 026657 150 QAYYPERLAKLYILHMPGFFVSVWRMVSRCLERATLEKIVIVTNEEEMK----NFVKDIGEEVLPE-EYGGRAKLV 220 (235)
Q Consensus 150 ~~~yP~~l~~i~ivn~p~~~~~~~~~vk~~l~~~~~~ki~~~~~~~~~~----~L~~~i~~~~LP~-~~GG~~~~~ 220 (235)
+..|..|-+.+||||.-.....+....+.+..-.-..+|.|+++....+ +..+..+...+-. ..||++...
T Consensus 35 ~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~ 110 (252)
T 3u5c_A 35 PYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNY 110 (252)
T ss_dssp CCEEEEETTTEEEECHHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCT
T ss_pred hheecccCCCcEEecHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccCh
Confidence 4456677789999997655443332222211112367899998743322 3334444444444 348887643
No 59
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=24.63 E-value=96 Score=17.08 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=21.7
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHH
Q 026657 15 YGDPTLMRFLIARSMDSEKAARMFVQW 41 (235)
Q Consensus 15 ~~d~~llRfL~~~~~~~~~a~~~l~~~ 41 (235)
++.....|-|-..+.|++.|...|+++
T Consensus 16 f~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 16 YSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp BCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 566677888888888999999888865
No 60
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=23.18 E-value=2.7e+02 Score=21.80 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=41.9
Q ss_pred CCCeEEEEeccccCCCCChHH-HHHHHHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCcCC-c--chHHHHHHHHHHHh
Q 026657 76 DGLPLLVIQVRKHFPSKDPLQ-FKKFVVHLLDKTIASSFRGSEVGNEKLTAILDLRQISYKN-V--DVRGMITGFQFLQA 151 (235)
Q Consensus 76 ~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~-~--~~~~~k~~~~~l~~ 151 (235)
.|.|++.+..+.........+ +..++...++.+.. .++...-+|+|- |+++.. . +++.++.+-.+...
T Consensus 124 ~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~-------aGI~~~~IilDP-GiGFgKt~~~N~~ll~~l~~~~~l 195 (270)
T 4hb7_A 124 YDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKI-------AGIPSNKIWLDP-GIGFAKTRNEEAEVMARLDELVAT 195 (270)
T ss_dssp TTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHH-------TTCCGGGEEEEC-CTTSSCCHHHHHHHHTCHHHHHTT
T ss_pred cCCCeEEeccccCCccccchhHHHHHHHHHHHHHHH-------cCCCCceEEEeC-CCCcccccccHHHHHhhHHHHhcC
Confidence 467887776543322222333 55555544444433 234444578898 777744 2 56667766666666
Q ss_pred cccccc
Q 026657 152 YYPERL 157 (235)
Q Consensus 152 ~yP~~l 157 (235)
.||-.+
T Consensus 196 g~PvLv 201 (270)
T 4hb7_A 196 EYPVLL 201 (270)
T ss_dssp CSCBEE
T ss_pred CCCEEE
Confidence 777554
No 61
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=23.04 E-value=28 Score=20.07 Aligned_cols=29 Identities=7% Similarity=-0.001 Sum_probs=20.7
Q ss_pred CCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 026657 12 TGKYGDPTLMRFLIARSMDSEKAARMFVQ 40 (235)
Q Consensus 12 ~~~~~d~~llRfL~~~~~~~~~a~~~l~~ 40 (235)
-|..|...+-.-|++++++++.|...+..
T Consensus 23 FP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 23 FPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp STTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred cccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47899999999999999999988776543
No 62
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.54 E-value=1.2e+02 Score=19.00 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=10.1
Q ss_pred HHHHHhcCCCHHHHHHHHH
Q 026657 21 MRFLIARSMDSEKAARMFV 39 (235)
Q Consensus 21 lRfL~~~~~~~~~a~~~l~ 39 (235)
+.=|..-+|+-++|.+.|.
T Consensus 33 i~~L~~MGF~~~~a~~AL~ 51 (83)
T 2dai_A 33 LRQLTEMGFPENRATKALQ 51 (83)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 3444455566555555553
No 63
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=21.30 E-value=88 Score=23.49 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=41.4
Q ss_pred HhccccccceeEEEeCChhHHHHHHHhhhccChhhhcceEEecCchhH----HHHHhhCCCCCCCcc-cCCCcCceeccc
Q 026657 150 QAYYPERLAKLYILHMPGFFVSVWRMVSRCLERATLEKIVIVTNEEEM----KNFVKDIGEEVLPEE-YGGRAKLVAVQD 224 (235)
Q Consensus 150 ~~~yP~~l~~i~ivn~p~~~~~~~~~vk~~l~~~~~~ki~~~~~~~~~----~~L~~~i~~~~LP~~-~GG~~~~~~~~~ 224 (235)
+.-|-+|-+.+||||.-.....+-...+ ++...-..+|-|+++.... .+..+..+.-.+-.. .||++....+..
T Consensus 34 ~YIy~~R~~gihIIdL~kT~~~L~~A~~-~i~~i~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~ 112 (208)
T 1vi6_A 34 KFIFKVRQDGLYVLDIRKLDERIRVAAK-FLSRYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSE 112 (208)
T ss_dssp GGEEEECTTSCEEECHHHHHHHHHHHHH-HHTTSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTT
T ss_pred ceEEeeeCCCcEEEcHHHHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHh
Confidence 3446666678999997665544433222 2222245789999864222 233344554445444 499887655443
No 64
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.30 E-value=93 Score=16.83 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHH
Q 026657 18 PTLMRFLIARSMDSEKAARMF 38 (235)
Q Consensus 18 ~~llRfL~~~~~~~~~a~~~l 38 (235)
....+-|++++ |++.|..-|
T Consensus 24 ~~a~~AL~~~~-n~e~A~~~L 43 (47)
T 2ekk_A 24 EHAMEALLNTS-TMEQATEYL 43 (47)
T ss_dssp HHHHHHHHHSC-SHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHH
Confidence 34444555554 555555443
Done!