Query 026659
Match_columns 235
No_of_seqs 233 out of 2286
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 4.7E-34 1E-38 228.7 21.1 160 5-186 106-272 (346)
2 KOG0105 Alternative splicing f 100.0 4.4E-32 9.4E-37 190.1 21.4 186 1-192 1-195 (241)
3 TIGR01645 half-pint poly-U bin 100.0 4.2E-32 9.1E-37 228.3 21.7 174 4-190 105-285 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-31 6.2E-36 216.7 20.4 161 5-187 2-169 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.8E-30 1E-34 209.5 24.1 181 5-189 88-349 (352)
6 TIGR01622 SF-CC1 splicing fact 100.0 2.2E-30 4.7E-35 218.3 21.7 171 4-187 87-264 (457)
7 KOG0148 Apoptosis-promoting RN 100.0 4.2E-31 9.2E-36 195.5 14.3 168 6-179 62-232 (321)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.4E-28 3.1E-33 206.8 24.9 176 6-189 58-307 (578)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.3E-29 1.1E-33 209.9 22.4 171 5-188 1-173 (481)
10 TIGR01628 PABP-1234 polyadenyl 100.0 3.1E-29 6.6E-34 216.0 20.3 157 8-186 2-164 (562)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.8E-28 3.9E-33 206.7 22.9 183 4-188 273-479 (481)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.6E-28 9.9E-33 206.9 22.2 177 3-187 172-373 (509)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.9E-27 4.2E-32 203.0 22.0 178 5-186 294-499 (509)
14 KOG0109 RNA-binding protein LA 100.0 1.1E-28 2.5E-33 184.4 11.5 146 7-183 3-148 (346)
15 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-27 2.3E-32 206.5 18.8 178 5-188 177-363 (562)
16 KOG0117 Heterogeneous nuclear 100.0 8E-28 1.7E-32 189.4 16.1 174 6-187 83-329 (506)
17 KOG0145 RNA-binding protein EL 100.0 2.4E-27 5.1E-32 174.9 14.1 163 5-189 40-209 (360)
18 TIGR01622 SF-CC1 splicing fact 99.9 4.4E-26 9.4E-31 192.2 21.9 177 6-186 186-445 (457)
19 KOG0144 RNA-binding protein CU 99.9 3.9E-27 8.5E-32 184.7 13.4 166 5-191 33-208 (510)
20 KOG0145 RNA-binding protein EL 99.9 5.7E-26 1.2E-30 167.6 16.1 177 5-185 126-354 (360)
21 KOG0131 Splicing factor 3b, su 99.9 3.2E-26 7E-31 160.3 12.7 160 4-186 7-174 (203)
22 KOG0127 Nucleolar protein fibr 99.9 1E-25 2.2E-30 181.6 16.2 177 6-186 5-193 (678)
23 KOG0106 Alternative splicing f 99.9 1.4E-25 2.9E-30 164.8 11.8 164 7-183 2-165 (216)
24 KOG0127 Nucleolar protein fibr 99.9 3.1E-24 6.7E-29 173.1 18.9 177 6-186 117-375 (678)
25 KOG0124 Polypyrimidine tract-b 99.9 1.8E-25 4E-30 172.3 8.2 169 6-187 113-288 (544)
26 KOG0123 Polyadenylate-binding 99.9 1.1E-22 2.4E-27 164.2 17.3 147 7-186 2-150 (369)
27 KOG0110 RNA-binding protein (R 99.9 1.6E-22 3.6E-27 167.8 13.6 159 6-175 515-683 (725)
28 KOG4206 Spliceosomal protein s 99.9 1.8E-21 4E-26 141.7 17.0 173 1-174 4-210 (221)
29 KOG0148 Apoptosis-promoting RN 99.9 5E-22 1.1E-26 147.6 11.3 139 1-190 1-143 (321)
30 KOG0123 Polyadenylate-binding 99.9 2.9E-21 6.3E-26 155.9 15.1 169 3-188 73-245 (369)
31 TIGR01645 half-pint poly-U bin 99.9 1.1E-19 2.3E-24 153.8 22.7 78 5-82 203-283 (612)
32 KOG0146 RNA-binding protein ET 99.9 3.9E-21 8.4E-26 142.7 12.3 173 5-177 18-357 (371)
33 KOG0107 Alternative splicing f 99.9 1E-20 2.3E-25 132.0 12.8 79 5-85 9-87 (195)
34 KOG0144 RNA-binding protein CU 99.9 1.2E-20 2.6E-25 148.6 14.4 79 5-83 123-206 (510)
35 KOG0147 Transcriptional coacti 99.8 1.5E-21 3.2E-26 158.1 6.0 168 3-177 176-350 (549)
36 KOG0107 Alternative splicing f 99.8 3.7E-20 8E-25 129.3 12.1 76 108-188 9-84 (195)
37 KOG4205 RNA-binding protein mu 99.8 4.3E-20 9.3E-25 144.3 12.8 168 1-188 1-175 (311)
38 PLN03134 glycine-rich RNA-bind 99.8 1.2E-19 2.6E-24 128.4 13.0 83 4-86 32-117 (144)
39 KOG0147 Transcriptional coacti 99.8 1.2E-19 2.6E-24 147.1 13.3 172 5-177 277-520 (549)
40 KOG1457 RNA binding protein (c 99.8 9.2E-19 2E-23 126.9 14.3 170 5-174 33-275 (284)
41 KOG1548 Transcription elongati 99.8 3.9E-18 8.5E-23 131.1 18.5 181 4-188 132-351 (382)
42 KOG4211 Splicing factor hnRNP- 99.8 9.4E-18 2E-22 134.6 16.6 165 5-185 9-178 (510)
43 KOG4207 Predicted splicing fac 99.8 2.4E-18 5.2E-23 123.3 11.3 80 5-84 12-94 (256)
44 KOG4207 Predicted splicing fac 99.8 2E-18 4.3E-23 123.8 10.8 79 104-186 8-90 (256)
45 KOG0121 Nuclear cap-binding pr 99.8 4.9E-19 1.1E-23 117.3 7.0 80 4-83 34-116 (153)
46 KOG1190 Polypyrimidine tract-b 99.8 4.2E-17 9.2E-22 127.9 16.9 176 6-186 297-488 (492)
47 KOG0110 RNA-binding protein (R 99.8 1.4E-17 3E-22 138.8 14.0 172 4-178 383-591 (725)
48 PLN03120 nucleic acid binding 99.8 1.1E-17 2.4E-22 126.5 11.3 80 5-85 3-82 (260)
49 KOG4676 Splicing factor, argin 99.8 1.6E-18 3.5E-23 135.0 6.5 168 4-173 5-214 (479)
50 PF00076 RRM_1: RNA recognitio 99.7 3.8E-18 8.3E-23 106.5 6.7 68 9-76 1-70 (70)
51 TIGR01648 hnRNP-R-Q heterogene 99.7 1.4E-17 3.1E-22 140.7 12.1 129 5-138 232-370 (578)
52 KOG0113 U1 small nuclear ribon 99.7 4.2E-17 9E-22 123.1 12.4 87 3-89 98-187 (335)
53 PLN03121 nucleic acid binding 99.7 1E-16 2.2E-21 119.3 11.2 80 5-85 4-83 (243)
54 KOG4212 RNA-binding protein hn 99.7 1E-15 2.2E-20 121.3 16.2 169 6-174 44-283 (608)
55 KOG0114 Predicted RNA-binding 99.7 2E-16 4.4E-21 101.0 8.8 80 5-84 17-96 (124)
56 COG0724 RNA-binding proteins ( 99.7 1.6E-15 3.5E-20 119.8 14.6 140 6-145 115-261 (306)
57 KOG0126 Predicted RNA-binding 99.7 7.6E-18 1.6E-22 118.4 0.8 83 4-86 33-118 (219)
58 KOG0122 Translation initiation 99.7 2.9E-16 6.3E-21 115.5 9.1 80 4-83 187-269 (270)
59 KOG0120 Splicing factor U2AF, 99.7 3E-16 6.4E-21 128.8 9.4 173 5-177 288-484 (500)
60 PLN03134 glycine-rich RNA-bind 99.7 6.1E-15 1.3E-19 104.4 14.5 83 105-191 30-116 (144)
61 PF14259 RRM_6: RNA recognitio 99.7 3E-16 6.5E-21 97.9 6.8 68 9-76 1-70 (70)
62 KOG0124 Polypyrimidine tract-b 99.7 1.1E-14 2.3E-19 113.3 16.4 75 7-81 211-288 (544)
63 TIGR01659 sex-lethal sex-letha 99.7 9.1E-16 2E-20 123.5 10.7 81 5-85 192-277 (346)
64 KOG0149 Predicted RNA-binding 99.6 3.9E-16 8.4E-21 114.4 7.2 76 6-82 12-90 (247)
65 PLN03213 repressor of silencin 99.6 1.2E-15 2.6E-20 122.7 9.6 77 4-81 8-86 (759)
66 KOG0125 Ataxin 2-binding prote 99.6 8.8E-16 1.9E-20 117.5 8.1 80 4-83 94-174 (376)
67 smart00362 RRM_2 RNA recogniti 99.6 5.4E-15 1.2E-19 92.2 9.2 71 8-78 1-72 (72)
68 KOG0130 RNA-binding protein RB 99.6 1.7E-15 3.6E-20 101.6 6.3 79 5-83 71-152 (170)
69 KOG1190 Polypyrimidine tract-b 99.6 6.7E-14 1.5E-18 110.2 15.8 176 7-188 151-372 (492)
70 PF00076 RRM_1: RNA recognitio 99.6 1.4E-14 3.1E-19 90.2 9.0 64 112-175 1-67 (70)
71 cd00590 RRM RRM (RNA recogniti 99.6 5.7E-14 1.2E-18 88.0 9.5 72 8-79 1-74 (74)
72 smart00360 RRM RNA recognition 99.5 4.4E-14 9.6E-19 87.7 8.2 68 11-78 1-71 (71)
73 KOG4212 RNA-binding protein hn 99.5 7.6E-13 1.6E-17 105.2 16.6 75 5-79 214-290 (608)
74 KOG0111 Cyclophilin-type pepti 99.5 8.6E-15 1.9E-19 106.2 5.3 82 5-86 9-93 (298)
75 PF13893 RRM_5: RNA recognitio 99.5 5.4E-14 1.2E-18 83.4 7.9 56 23-80 1-56 (56)
76 KOG1456 Heterogeneous nuclear 99.5 1.6E-12 3.6E-17 101.4 16.9 172 4-177 285-477 (494)
77 KOG0108 mRNA cleavage and poly 99.5 5.7E-14 1.2E-18 114.8 9.2 79 7-85 19-100 (435)
78 KOG0415 Predicted peptidyl pro 99.5 2.8E-14 6E-19 110.5 5.9 79 4-82 237-318 (479)
79 KOG0125 Ataxin 2-binding prote 99.5 1.4E-13 3.1E-18 105.5 9.4 80 106-189 93-174 (376)
80 PLN03120 nucleic acid binding 99.5 2.7E-13 5.9E-18 102.8 10.6 75 109-188 4-79 (260)
81 KOG0105 Alternative splicing f 99.5 2.2E-13 4.8E-18 96.4 9.3 82 108-193 5-87 (241)
82 KOG0122 Translation initiation 99.5 5.9E-13 1.3E-17 98.3 11.1 81 105-189 185-269 (270)
83 KOG1365 RNA-binding protein Fu 99.5 2.7E-13 5.9E-18 106.0 9.5 174 8-186 163-359 (508)
84 KOG0129 Predicted RNA-binding 99.5 1.6E-12 3.6E-17 105.5 14.3 157 5-166 258-432 (520)
85 KOG0121 Nuclear cap-binding pr 99.5 2.3E-13 5E-18 90.6 7.5 78 107-188 34-115 (153)
86 KOG0117 Heterogeneous nuclear 99.5 1.5E-13 3.2E-18 109.4 7.5 78 6-88 259-336 (506)
87 PF14259 RRM_6: RNA recognitio 99.5 7E-13 1.5E-17 82.5 8.8 63 112-174 1-66 (70)
88 KOG0130 RNA-binding protein RB 99.5 5.8E-13 1.2E-17 89.5 8.4 77 106-186 69-149 (170)
89 PLN03213 repressor of silencin 99.4 1E-12 2.2E-17 106.2 9.5 77 108-188 9-87 (759)
90 KOG0113 U1 small nuclear ribon 99.4 1.4E-11 3E-16 93.6 13.9 76 107-186 99-178 (335)
91 PLN03121 nucleic acid binding 99.4 3.4E-12 7.4E-17 95.4 10.4 75 108-187 4-79 (243)
92 KOG0109 RNA-binding protein LA 99.4 5.5E-13 1.2E-17 100.8 5.7 75 4-83 76-150 (346)
93 smart00361 RRM_1 RNA recogniti 99.4 2.2E-12 4.9E-17 80.0 7.5 58 20-77 2-69 (70)
94 smart00362 RRM_2 RNA recogniti 99.4 5.8E-12 1.3E-16 78.2 9.5 64 111-174 1-66 (72)
95 KOG0120 Splicing factor U2AF, 99.4 2.7E-12 5.9E-17 105.8 10.0 169 3-175 172-359 (500)
96 KOG0114 Predicted RNA-binding 99.4 5.7E-12 1.2E-16 80.8 8.9 79 105-187 14-93 (124)
97 KOG0112 Large RNA-binding prot 99.3 1E-12 2.2E-17 112.8 5.1 158 4-187 370-529 (975)
98 KOG0132 RNA polymerase II C-te 99.3 3.8E-12 8.2E-17 107.7 8.3 77 6-85 421-497 (894)
99 KOG1456 Heterogeneous nuclear 99.3 6.3E-10 1.4E-14 87.2 19.4 177 4-187 118-361 (494)
100 KOG0146 RNA-binding protein ET 99.3 6.9E-12 1.5E-16 93.9 5.9 83 3-85 282-367 (371)
101 smart00360 RRM RNA recognition 99.3 4E-11 8.7E-16 74.1 8.4 61 114-174 1-65 (71)
102 KOG0131 Splicing factor 3b, su 99.3 1.7E-11 3.7E-16 86.8 6.7 79 105-187 5-87 (203)
103 cd00590 RRM RRM (RNA recogniti 99.2 1.5E-10 3.2E-15 72.2 10.1 64 111-174 1-67 (74)
104 KOG4454 RNA binding protein (R 99.2 2.7E-12 5.9E-17 93.3 1.6 138 5-172 8-150 (267)
105 KOG4208 Nucleolar RNA-binding 99.2 4.1E-11 8.8E-16 86.6 7.4 79 5-83 48-130 (214)
106 PF13893 RRM_5: RNA recognitio 99.2 9.7E-11 2.1E-15 69.3 7.9 55 126-185 1-55 (56)
107 KOG0126 Predicted RNA-binding 99.2 4E-12 8.6E-17 89.9 -0.1 74 109-186 35-112 (219)
108 KOG0153 Predicted RNA-binding 99.2 1.4E-10 3E-15 90.0 7.7 76 4-82 226-302 (377)
109 KOG2193 IGF-II mRNA-binding pr 99.2 8.1E-12 1.8E-16 99.1 1.0 142 7-175 2-147 (584)
110 KOG0111 Cyclophilin-type pepti 99.1 4E-11 8.7E-16 87.4 4.0 79 108-190 9-91 (298)
111 KOG4660 Protein Mei2, essentia 99.1 5.9E-11 1.3E-15 97.4 4.7 165 4-174 73-239 (549)
112 KOG4661 Hsp27-ERE-TATA-binding 99.1 3.6E-10 7.9E-15 93.1 8.9 84 6-89 405-491 (940)
113 KOG0149 Predicted RNA-binding 99.1 2.3E-10 5.1E-15 84.4 6.7 64 110-174 13-80 (247)
114 KOG0533 RRM motif-containing p 99.1 9E-10 2E-14 83.4 8.7 80 6-85 83-164 (243)
115 KOG0415 Predicted peptidyl pro 99.1 5.4E-10 1.2E-14 87.0 7.7 78 105-186 235-316 (479)
116 COG0724 RNA-binding proteins ( 99.1 1.3E-09 2.8E-14 86.0 9.9 75 109-187 115-193 (306)
117 smart00361 RRM_1 RNA recogniti 99.1 1.5E-09 3.2E-14 67.3 8.1 52 123-174 2-64 (70)
118 KOG4211 Splicing factor hnRNP- 99.0 1.2E-08 2.5E-13 83.0 14.4 167 5-174 102-347 (510)
119 KOG0108 mRNA cleavage and poly 99.0 6.8E-10 1.5E-14 91.2 7.5 79 110-192 19-101 (435)
120 KOG0128 RNA-binding protein SA 99.0 2.4E-11 5.2E-16 104.0 -2.8 135 4-175 665-805 (881)
121 KOG4210 Nuclear localization s 98.9 2.1E-09 4.5E-14 84.4 6.1 176 5-196 87-271 (285)
122 KOG4209 Splicing factor RNPS1, 98.9 2E-09 4.3E-14 81.8 5.7 79 4-83 99-180 (231)
123 KOG0151 Predicted splicing reg 98.9 2.7E-09 6E-14 90.0 6.9 78 5-82 173-256 (877)
124 PF11608 Limkain-b1: Limkain b 98.9 1.9E-08 4.1E-13 62.4 7.7 71 7-84 3-78 (90)
125 KOG0116 RasGAP SH3 binding pro 98.9 6.8E-09 1.5E-13 84.9 7.3 77 5-82 287-366 (419)
126 KOG4205 RNA-binding protein mu 98.9 5.6E-09 1.2E-13 82.3 6.5 83 6-89 97-182 (311)
127 PF04059 RRM_2: RNA recognitio 98.8 4.9E-08 1.1E-12 63.6 8.5 75 7-81 2-85 (97)
128 KOG0132 RNA polymerase II C-te 98.7 4.2E-08 9.1E-13 83.8 8.3 77 108-190 420-496 (894)
129 KOG4661 Hsp27-ERE-TATA-binding 98.7 4.4E-08 9.6E-13 81.1 7.7 77 108-188 404-484 (940)
130 KOG4206 Spliceosomal protein s 98.7 9.9E-08 2.1E-12 70.4 8.1 76 110-189 10-90 (221)
131 KOG4307 RNA binding protein RB 98.7 1.2E-07 2.5E-12 80.3 9.2 174 5-184 310-509 (944)
132 KOG0533 RRM motif-containing p 98.7 9.8E-08 2.1E-12 72.5 8.0 67 110-176 84-153 (243)
133 KOG0226 RNA-binding proteins [ 98.7 4.2E-08 9.1E-13 73.4 5.8 152 9-174 99-259 (290)
134 KOG1365 RNA-binding protein Fu 98.6 7.7E-07 1.7E-11 70.5 12.1 157 4-166 58-225 (508)
135 KOG2202 U2 snRNP splicing fact 98.6 1.7E-08 3.8E-13 75.6 2.0 62 21-82 83-147 (260)
136 KOG0226 RNA-binding proteins [ 98.6 8.2E-08 1.8E-12 71.9 4.8 76 5-80 189-267 (290)
137 KOG0153 Predicted RNA-binding 98.6 4.1E-07 8.9E-12 71.1 8.3 76 107-188 226-302 (377)
138 KOG0106 Alternative splicing f 98.5 3.8E-07 8.3E-12 67.9 6.6 70 111-188 3-72 (216)
139 KOG0116 RasGAP SH3 binding pro 98.5 2.5E-06 5.5E-11 70.1 11.4 77 109-190 288-368 (419)
140 KOG4454 RNA binding protein (R 98.5 7.8E-08 1.7E-12 70.4 2.2 78 104-181 4-83 (267)
141 KOG1457 RNA binding protein (c 98.4 2.5E-06 5.3E-11 62.9 8.9 82 108-190 33-119 (284)
142 KOG4660 Protein Mei2, essentia 98.4 3.3E-07 7.1E-12 75.8 4.8 69 107-176 73-141 (549)
143 KOG4208 Nucleolar RNA-binding 98.4 2.2E-06 4.8E-11 62.4 7.7 74 105-178 45-123 (214)
144 KOG0151 Predicted splicing reg 98.4 1.8E-06 4E-11 73.4 8.3 83 100-186 165-254 (877)
145 PF08777 RRM_3: RNA binding mo 98.4 1.2E-06 2.6E-11 58.5 5.7 59 110-170 2-60 (105)
146 PF04059 RRM_2: RNA recognitio 98.3 9.5E-06 2.1E-10 52.9 9.3 66 110-175 2-73 (97)
147 PF08777 RRM_3: RNA binding mo 98.3 1.9E-06 4E-11 57.5 6.0 70 7-79 2-76 (105)
148 KOG1548 Transcription elongati 98.3 9.8E-06 2.1E-10 63.5 10.1 78 106-187 131-219 (382)
149 KOG1995 Conserved Zn-finger pr 98.2 1.8E-06 4E-11 67.9 4.5 79 5-83 65-154 (351)
150 PF14605 Nup35_RRM_2: Nup53/35 98.2 6.6E-06 1.4E-10 47.6 5.4 53 6-62 1-53 (53)
151 COG5175 MOT2 Transcriptional r 98.1 8.8E-06 1.9E-10 63.6 6.9 76 6-81 114-201 (480)
152 PF11608 Limkain-b1: Limkain b 98.1 4E-05 8.7E-10 47.8 7.9 68 110-187 3-75 (90)
153 KOG4307 RNA binding protein RB 98.1 2.6E-05 5.6E-10 66.6 8.8 76 4-79 864-943 (944)
154 KOG4210 Nuclear localization s 98.0 7.1E-06 1.5E-10 64.7 5.0 81 3-84 181-265 (285)
155 PF05172 Nup35_RRM: Nup53/35/4 98.0 2.9E-05 6.2E-10 51.1 6.9 75 5-81 5-90 (100)
156 KOG2314 Translation initiation 98.0 2.3E-05 5.1E-10 65.3 6.7 76 6-81 58-142 (698)
157 KOG4849 mRNA cleavage factor I 97.9 7.7E-06 1.7E-10 64.2 3.4 76 6-81 80-160 (498)
158 KOG3152 TBP-binding protein, a 97.9 7E-06 1.5E-10 61.8 2.9 69 6-74 74-157 (278)
159 KOG4209 Splicing factor RNPS1, 97.9 3.7E-05 8E-10 58.7 6.6 70 107-177 99-172 (231)
160 KOG0112 Large RNA-binding prot 97.9 2E-05 4.3E-10 69.0 5.7 81 3-86 452-534 (975)
161 PF14605 Nup35_RRM_2: Nup53/35 97.8 6.1E-05 1.3E-09 43.5 5.2 52 110-164 2-53 (53)
162 KOG2416 Acinus (induces apopto 97.8 2.5E-05 5.3E-10 65.5 3.9 75 4-81 442-520 (718)
163 PF08952 DUF1866: Domain of un 97.7 0.00024 5.1E-09 49.6 7.7 73 4-82 25-106 (146)
164 KOG0115 RNA-binding protein p5 97.7 0.00014 3.1E-09 54.9 6.6 99 56-181 5-106 (275)
165 KOG0129 Predicted RNA-binding 97.6 0.00021 4.6E-09 59.2 7.4 60 4-63 368-431 (520)
166 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00029 6.3E-09 46.3 6.6 66 108-175 5-81 (100)
167 KOG1855 Predicted RNA-binding 97.6 4.2E-05 9.1E-10 61.8 2.9 65 5-69 230-310 (484)
168 KOG4676 Splicing factor, argin 97.6 9.3E-06 2E-10 64.7 -1.1 63 7-71 152-214 (479)
169 KOG0128 RNA-binding protein SA 97.5 0.0001 2.2E-09 64.5 4.3 78 7-84 737-816 (881)
170 KOG2202 U2 snRNP splicing fact 97.5 0.00012 2.6E-09 55.4 3.8 54 124-177 83-140 (260)
171 PF15023 DUF4523: Protein of u 97.5 0.0011 2.3E-08 45.8 8.0 74 3-81 83-160 (166)
172 COG5175 MOT2 Transcriptional r 97.4 0.00063 1.4E-08 53.5 6.7 69 107-175 112-193 (480)
173 PF08675 RNA_bind: RNA binding 97.3 0.0018 3.9E-08 40.5 6.7 52 9-66 12-63 (87)
174 KOG1855 Predicted RNA-binding 97.3 0.00045 9.7E-09 56.0 4.7 66 105-170 227-309 (484)
175 KOG2314 Translation initiation 97.2 0.0012 2.5E-08 55.6 7.0 67 108-174 57-132 (698)
176 PF07576 BRAP2: BRCA1-associat 97.2 0.0034 7.4E-08 42.1 8.0 67 6-72 13-81 (110)
177 KOG1996 mRNA splicing factor [ 97.2 0.0012 2.6E-08 51.0 6.5 55 123-177 300-359 (378)
178 KOG2253 U1 snRNP complex, subu 97.2 1.4E-05 2.9E-10 67.9 -4.5 123 5-135 39-161 (668)
179 KOG1996 mRNA splicing factor [ 97.2 0.0012 2.6E-08 51.0 6.3 62 20-81 300-365 (378)
180 KOG1995 Conserved Zn-finger pr 97.1 0.0012 2.7E-08 52.4 5.6 70 106-175 63-144 (351)
181 KOG2416 Acinus (induces apopto 97.1 0.00055 1.2E-08 57.7 3.6 66 106-173 441-507 (718)
182 KOG3152 TBP-binding protein, a 97.0 0.00047 1E-08 52.2 2.5 67 109-175 74-156 (278)
183 PF08952 DUF1866: Domain of un 97.0 0.0046 9.9E-08 43.3 7.1 49 124-177 51-99 (146)
184 KOG0804 Cytoplasmic Zn-finger 96.9 0.01 2.2E-07 48.7 9.1 68 5-72 73-142 (493)
185 PF10309 DUF2414: Protein of u 96.7 0.023 4.9E-07 33.7 7.2 54 110-167 6-62 (62)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.0022 4.8E-08 47.1 3.2 81 4-84 5-99 (176)
187 KOG2135 Proteins containing th 96.6 0.0015 3.3E-08 53.7 2.4 76 5-84 371-447 (526)
188 PF10309 DUF2414: Protein of u 96.5 0.027 5.9E-07 33.4 7.0 53 7-65 6-62 (62)
189 KOG0835 Cyclin L [General func 96.5 0.0028 6.1E-08 49.9 3.2 20 44-63 172-191 (367)
190 PF08675 RNA_bind: RNA binding 96.3 0.026 5.6E-07 35.5 6.3 55 111-169 10-64 (87)
191 KOG2068 MOT2 transcription fac 96.3 0.0021 4.6E-08 50.8 1.5 77 7-83 78-163 (327)
192 PF03880 DbpA: DbpA RNA bindin 96.2 0.043 9.3E-07 34.0 7.1 58 17-80 12-74 (74)
193 KOG0115 RNA-binding protein p5 96.0 0.0094 2E-07 45.4 3.7 75 7-81 32-112 (275)
194 PF04847 Calcipressin: Calcipr 96.0 0.041 9E-07 40.6 7.0 62 19-83 8-71 (184)
195 KOG2591 c-Mpl binding protein, 95.9 0.015 3.2E-07 49.1 4.9 71 5-79 174-248 (684)
196 PF07576 BRAP2: BRCA1-associat 95.9 0.19 4.2E-06 33.7 9.3 64 111-174 15-81 (110)
197 KOG4285 Mitotic phosphoprotein 95.8 0.044 9.5E-07 42.9 6.9 74 6-84 197-271 (350)
198 KOG0835 Cyclin L [General func 95.6 0.013 2.8E-07 46.3 3.4 12 120-131 212-223 (367)
199 PF10567 Nab6_mRNP_bdg: RNA-re 95.4 0.77 1.7E-05 36.1 12.2 163 6-169 15-213 (309)
200 KOG2591 c-Mpl binding protein, 95.4 0.12 2.7E-06 43.8 8.5 56 109-167 175-232 (684)
201 KOG2318 Uncharacterized conser 95.4 0.079 1.7E-06 45.2 7.3 78 4-81 172-306 (650)
202 KOG2135 Proteins containing th 95.3 0.042 9.1E-07 45.6 5.5 72 110-188 373-445 (526)
203 KOG0804 Cytoplasmic Zn-finger 95.1 0.13 2.8E-06 42.6 7.6 66 109-174 74-142 (493)
204 KOG2193 IGF-II mRNA-binding pr 95.0 0.032 7E-07 45.6 3.8 62 111-174 3-65 (584)
205 PF11767 SET_assoc: Histone ly 94.9 0.2 4.2E-06 30.3 6.1 55 17-77 11-65 (66)
206 PF07292 NID: Nmi/IFP 35 domai 94.8 0.072 1.6E-06 34.1 4.3 72 48-131 1-74 (88)
207 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.09 2E-06 38.6 5.4 70 108-177 6-85 (176)
208 KOG4285 Mitotic phosphoprotein 94.6 0.14 3.1E-06 40.1 6.4 63 109-175 197-259 (350)
209 PF15023 DUF4523: Protein of u 94.5 0.12 2.5E-06 36.1 5.1 62 108-172 85-150 (166)
210 KOG4574 RNA-binding protein (c 93.2 0.073 1.6E-06 47.4 2.8 72 10-84 302-375 (1007)
211 KOG2068 MOT2 transcription fac 92.9 0.064 1.4E-06 42.6 1.9 68 109-176 77-154 (327)
212 PF04847 Calcipressin: Calcipr 92.8 0.54 1.2E-05 34.8 6.5 53 121-175 7-61 (184)
213 KOG4574 RNA-binding protein (c 92.4 0.069 1.5E-06 47.5 1.6 73 112-188 301-373 (1007)
214 PF14111 DUF4283: Domain of un 92.4 0.18 3.9E-06 35.9 3.6 120 9-145 18-141 (153)
215 KOG4849 mRNA cleavage factor I 91.6 0.24 5.2E-06 39.7 3.6 68 108-175 79-152 (498)
216 KOG2253 U1 snRNP complex, subu 89.4 0.39 8.5E-06 41.8 3.3 67 104-175 35-101 (668)
217 KOG2891 Surface glycoprotein [ 88.2 0.21 4.5E-06 38.8 0.8 65 6-70 149-247 (445)
218 PF03880 DbpA: DbpA RNA bindin 87.0 4.1 8.9E-05 25.1 6.0 58 119-185 11-73 (74)
219 KOG4410 5-formyltetrahydrofola 86.2 3 6.4E-05 32.8 6.0 47 7-56 331-378 (396)
220 KOG4019 Calcineurin-mediated s 84.8 6.8 0.00015 28.7 6.9 76 6-84 10-91 (193)
221 PRK14548 50S ribosomal protein 84.7 5.2 0.00011 25.4 5.6 56 8-63 22-79 (84)
222 KOG2888 Putative RNA binding p 84.3 0.4 8.7E-06 38.2 0.6 13 18-30 169-181 (453)
223 KOG4410 5-formyltetrahydrofola 83.6 6.7 0.00015 30.9 6.9 50 108-158 329-378 (396)
224 TIGR03636 L23_arch archaeal ri 83.4 7.3 0.00016 24.3 5.8 56 8-63 15-72 (77)
225 PF03468 XS: XS domain; Inter 83.0 1.1 2.4E-05 30.4 2.3 56 8-63 10-75 (116)
226 PF14893 PNMA: PNMA 82.5 1.9 4.1E-05 35.1 3.8 56 1-56 13-73 (331)
227 PF09707 Cas_Cas2CT1978: CRISP 82.1 3.8 8.3E-05 26.2 4.3 50 5-54 24-73 (86)
228 KOG3580 Tight junction protein 80.5 5.9 0.00013 34.7 6.1 43 103-145 55-98 (1027)
229 KOG4246 Predicted DNA-binding 78.7 0.76 1.6E-05 41.3 0.4 7 47-53 61-67 (1194)
230 PRK11558 putative ssRNA endonu 76.0 6.1 0.00013 25.8 3.9 51 5-55 26-76 (97)
231 PF15513 DUF4651: Domain of un 74.6 8.4 0.00018 22.8 3.9 19 21-39 9-27 (62)
232 KOG1295 Nonsense-mediated deca 73.6 3.4 7.5E-05 33.8 2.8 66 5-70 6-77 (376)
233 KOG4213 RNA-binding protein La 73.5 5.3 0.00011 29.2 3.4 53 7-63 112-168 (205)
234 PF07530 PRE_C2HC: Associated 73.3 15 0.00032 22.3 4.9 59 21-82 2-64 (68)
235 KOG4483 Uncharacterized conser 73.1 10 0.00022 31.4 5.3 53 7-63 392-445 (528)
236 COG5638 Uncharacterized conser 72.9 18 0.0004 30.1 6.7 78 3-80 143-295 (622)
237 smart00596 PRE_C2HC PRE_C2HC d 70.6 16 0.00035 22.2 4.5 59 21-82 2-64 (69)
238 cd04889 ACT_PDH-BS-like C-term 68.5 19 0.00041 20.3 5.6 43 20-62 12-55 (56)
239 TIGR01873 cas_CT1978 CRISPR-as 65.9 14 0.00031 23.6 3.9 50 5-54 24-74 (87)
240 PTZ00191 60S ribosomal protein 65.1 32 0.00068 24.4 5.8 54 8-61 83-138 (145)
241 KOG4008 rRNA processing protei 61.9 7.4 0.00016 29.8 2.4 34 5-38 39-72 (261)
242 KOG4019 Calcineurin-mediated s 61.7 7.1 0.00015 28.6 2.1 63 111-175 12-79 (193)
243 KOG2295 C2H2 Zn-finger protein 60.1 1.1 2.5E-05 38.3 -2.3 68 5-72 230-300 (648)
244 cd04908 ACT_Bt0572_1 N-termina 60.1 33 0.00072 20.2 6.6 44 19-63 14-58 (66)
245 KOG4483 Uncharacterized conser 58.0 33 0.00071 28.6 5.5 53 110-165 392-445 (528)
246 KOG4246 Predicted DNA-binding 57.5 5.6 0.00012 36.1 1.3 6 224-229 355-360 (1194)
247 PF02714 DUF221: Domain of unk 57.2 15 0.00033 29.7 3.7 35 48-84 1-35 (325)
248 PRK14548 50S ribosomal protein 56.7 49 0.0011 21.0 6.5 55 113-167 24-81 (84)
249 PF11767 SET_assoc: Histone ly 54.6 46 0.00099 20.1 7.2 50 120-174 11-60 (66)
250 KOG2318 Uncharacterized conser 54.1 1.4E+02 0.003 26.5 8.7 69 107-175 172-296 (650)
251 COG0445 GidA Flavin-dependent 53.8 1.1E+02 0.0024 27.2 8.2 97 45-144 236-336 (621)
252 PF08734 GYD: GYD domain; Int 53.5 58 0.0013 20.9 6.2 48 122-169 21-69 (91)
253 PF03439 Spt5-NGN: Early trans 51.4 47 0.001 20.9 4.5 35 32-68 33-67 (84)
254 KOG2146 Splicing coactivator S 50.5 24 0.00053 27.9 3.5 30 50-79 57-87 (354)
255 PF11411 DNA_ligase_IV: DNA li 49.1 14 0.00031 19.2 1.5 17 16-32 19-35 (36)
256 KOG2295 C2H2 Zn-finger protein 48.9 3.4 7.3E-05 35.6 -1.3 67 108-174 230-300 (648)
257 PF09902 DUF2129: Uncharacteri 48.2 57 0.0012 20.0 4.3 39 26-70 16-54 (71)
258 PRK08559 nusG transcription an 47.2 94 0.002 22.2 6.0 33 33-67 36-68 (153)
259 PRK10629 EnvZ/OmpR regulon mod 46.9 95 0.0021 21.5 8.1 72 5-81 34-109 (127)
260 PF10567 Nab6_mRNP_bdg: RNA-re 46.6 40 0.00086 26.9 4.2 53 110-162 16-79 (309)
261 PF02829 3H: 3H domain; Inter 46.0 58 0.0013 21.4 4.4 51 17-67 8-58 (98)
262 COG0018 ArgS Arginyl-tRNA synt 44.7 2.3E+02 0.0051 25.4 9.7 100 20-147 60-168 (577)
263 KOG1295 Nonsense-mediated deca 44.3 33 0.00071 28.4 3.6 64 110-173 8-78 (376)
264 TIGR03636 L23_arch archaeal ri 44.2 78 0.0017 19.7 6.6 55 112-166 16-73 (77)
265 KOG0156 Cytochrome P450 CYP2 s 43.8 66 0.0014 28.0 5.6 59 10-75 36-97 (489)
266 COG0150 PurM Phosphoribosylami 42.9 8.6 0.00019 31.3 0.1 58 10-68 252-322 (345)
267 PRK08559 nusG transcription an 40.3 1.3E+02 0.0028 21.5 5.9 29 141-169 40-68 (153)
268 PRK02302 hypothetical protein; 40.2 83 0.0018 20.3 4.2 38 26-69 22-59 (89)
269 PF00403 HMA: Heavy-metal-asso 40.1 73 0.0016 18.2 6.4 54 111-166 1-58 (62)
270 PF15063 TC1: Thyroid cancer p 39.8 22 0.00047 22.0 1.5 25 112-136 28-52 (79)
271 PRK02886 hypothetical protein; 38.5 92 0.002 20.0 4.2 54 4-70 5-58 (87)
272 PF05036 SPOR: Sporulation rel 38.0 69 0.0015 19.0 3.7 60 109-168 4-65 (76)
273 PRK05738 rplW 50S ribosomal pr 37.2 1.2E+02 0.0025 19.7 5.2 32 7-38 20-53 (92)
274 PRK11901 hypothetical protein; 37.0 1.4E+02 0.0031 24.3 6.1 61 107-171 243-308 (327)
275 PF11823 DUF3343: Protein of u 36.6 54 0.0012 19.9 3.0 25 46-70 2-26 (73)
276 COG5193 LHP1 La protein, small 36.5 20 0.00043 29.9 1.3 58 6-63 174-244 (438)
277 KOG4365 Uncharacterized conser 35.5 7 0.00015 32.8 -1.4 75 6-81 3-80 (572)
278 PF15407 Spo7_2_N: Sporulation 34.8 27 0.00058 21.1 1.4 18 5-22 26-43 (67)
279 PF14893 PNMA: PNMA 32.8 35 0.00077 27.9 2.2 50 110-159 19-74 (331)
280 cd00027 BRCT Breast Cancer Sup 32.6 77 0.0017 18.0 3.3 26 7-32 2-27 (72)
281 PRK11901 hypothetical protein; 32.4 1.6E+02 0.0035 24.1 5.6 60 5-68 244-307 (327)
282 COG0030 KsgA Dimethyladenosine 31.8 79 0.0017 24.9 3.8 30 7-36 96-125 (259)
283 cd04909 ACT_PDH-BS C-terminal 30.8 1.2E+02 0.0025 17.8 5.5 47 19-65 14-62 (69)
284 CHL00123 rps6 ribosomal protei 30.7 1.6E+02 0.0034 19.2 5.0 50 14-63 14-80 (97)
285 PF14111 DUF4283: Domain of un 30.6 62 0.0013 22.7 3.0 33 9-41 107-140 (153)
286 PF00276 Ribosomal_L23: Riboso 30.1 1.4E+02 0.0031 19.1 4.3 50 8-57 21-85 (91)
287 PF12993 DUF3877: Domain of un 29.7 1.1E+02 0.0024 22.4 4.0 36 119-156 107-143 (175)
288 PRK11230 glycolate oxidase sub 29.2 1.7E+02 0.0036 25.7 5.8 47 20-66 203-255 (499)
289 PF08156 NOP5NT: NOP5NT (NUC12 29.1 19 0.00041 21.7 0.1 36 124-168 27-65 (67)
290 COG3254 Uncharacterized conser 29.0 1.8E+02 0.0039 19.4 5.5 41 22-63 28-69 (105)
291 PF08544 GHMP_kinases_C: GHMP 28.2 1.5E+02 0.0032 18.1 6.2 44 124-168 37-80 (85)
292 KOG2187 tRNA uracil-5-methyltr 28.1 51 0.0011 28.7 2.4 42 44-85 62-103 (534)
293 cd04879 ACT_3PGDH-like ACT_3PG 27.9 1.2E+02 0.0027 17.2 5.2 38 17-54 10-49 (71)
294 PTZ00191 60S ribosomal protein 27.5 2.3E+02 0.005 20.2 6.4 54 112-165 84-140 (145)
295 PF08442 ATP-grasp_2: ATP-gras 27.3 1.8E+02 0.004 21.9 5.1 53 18-71 25-81 (202)
296 PF11671 Apis_Csd: Complementa 27.3 14 0.0003 25.4 -0.8 14 220-233 40-53 (146)
297 PF02714 DUF221: Domain of unk 26.9 65 0.0014 26.0 2.8 23 150-172 1-23 (325)
298 PF01071 GARS_A: Phosphoribosy 26.2 2.8E+02 0.0062 20.8 5.9 60 18-78 24-86 (194)
299 PF00398 RrnaAD: Ribosomal RNA 24.8 61 0.0013 25.4 2.2 23 6-28 97-119 (262)
300 PHA01632 hypothetical protein 24.3 99 0.0021 17.8 2.4 21 9-29 19-39 (64)
301 cd04931 ACT_PAH ACT domain of 24.0 2.1E+02 0.0044 18.4 5.8 48 19-66 27-79 (90)
302 KOG4008 rRNA processing protei 23.8 79 0.0017 24.5 2.5 32 110-141 41-72 (261)
303 PF05189 RTC_insert: RNA 3'-te 23.2 1.4E+02 0.003 19.5 3.4 45 9-53 13-65 (103)
304 TIGR00755 ksgA dimethyladenosi 22.6 1E+02 0.0022 23.9 3.1 24 8-31 96-119 (253)
305 cd04908 ACT_Bt0572_1 N-termina 22.2 1.8E+02 0.0038 16.9 8.1 44 122-165 14-58 (66)
306 cd04904 ACT_AAAH ACT domain of 22.0 2E+02 0.0042 17.4 6.8 50 18-67 12-65 (74)
307 PF14112 DUF4284: Domain of un 22.0 92 0.002 21.3 2.4 18 8-28 3-20 (122)
308 PRK11634 ATP-dependent RNA hel 22.0 1.7E+02 0.0036 26.5 4.6 59 17-81 498-561 (629)
309 cd04905 ACT_CM-PDT C-terminal 21.8 2E+02 0.0044 17.5 6.0 49 19-67 14-68 (80)
310 PF06014 DUF910: Bacterial pro 21.5 66 0.0014 19.1 1.4 16 20-35 4-19 (62)
311 PTZ00338 dimethyladenosine tra 20.5 1.2E+02 0.0027 24.3 3.2 23 8-30 103-125 (294)
312 cd04882 ACT_Bt0572_2 C-termina 20.3 1.8E+02 0.0039 16.4 5.3 44 20-63 13-58 (65)
313 PRK10629 EnvZ/OmpR regulon mod 20.2 3.1E+02 0.0067 19.0 7.7 60 111-174 37-100 (127)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.7e-34 Score=228.72 Aligned_cols=160 Identities=26% Similarity=0.365 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..++|||+|||+++|+++|+++|+.||+|+.|+|.. ++.++|||||+|.++++|++|++.||+..+.++.|.|.++.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 578999999999999999999999999999999953 67889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCH
Q 026659 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (235)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~ 157 (235)
+... ....++|||.|||..+++++|+++|.+||.|+.+.++.+.. +++|||+|.+.
T Consensus 186 p~~~--------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 186 PGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccc--------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 4321 11245899999999999999999999999999999998753 36999999999
Q ss_pred HHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 158 ~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
++|++||+.||+..+.+... .|+|..+
T Consensus 246 e~A~~Ai~~lng~~~~g~~~--~l~V~~a 272 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQ--PLTVRLA 272 (346)
T ss_pred HHHHHHHHHhCCCccCCCce--eEEEEEC
Confidence 99999999999999977433 4444433
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.4e-32 Score=190.12 Aligned_cols=186 Identities=62% Similarity=1.045 Sum_probs=163.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
|+++.+++|||||||.++.+.+|+++|.+||.|.+|.|+....+..||||+|+++.+|+.|+..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 88999999999999999999999999999999999999887778899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEE
Q 026659 81 HGGRRHSSSMDRYSSYSS---------GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGI 151 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~f 151 (235)
....... .+.+++.. ....++...+.+.|.|.+||...++++|++++.+.|+|....+.+|. ++.
T Consensus 81 rggr~s~---~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~Gv 154 (241)
T KOG0105|consen 81 RGGRSSS---DRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGV 154 (241)
T ss_pred cCCCccc---ccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---cee
Confidence 8776322 22222222 22346778899999999999999999999999999999999999886 799
Q ss_pred EEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCCCCCc
Q 026659 152 VDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRRSY 192 (235)
Q Consensus 152 V~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~sr 192 (235)
|+|...++...|+.+|+...+...-...+|++.......+.
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~~~ 195 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRDQG 195 (241)
T ss_pred eeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCccc
Confidence 99999999999999999999988767889999877655433
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.2e-32 Score=228.33 Aligned_cols=174 Identities=20% Similarity=0.294 Sum_probs=146.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
...++|||+|||+++++++|+++|.+||+|..|.+.. +++++|||||+|.+.++|+.|+..|||..+.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3568999999999999999999999999999999953 6789999999999999999999999999999999999864
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcC
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTS 156 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~ 156 (235)
......... ............+|||+||+..+++++|.++|+.||.|..+.+..+. .+|||||+|.+
T Consensus 185 ~~~p~a~~~---------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 185 SNMPQAQPI---------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred ccccccccc---------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 432111100 00011112234689999999999999999999999999999999875 35799999999
Q ss_pred HHHHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 157 ~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
.++|.+|+..|||..++| ..|+|......+
T Consensus 256 ~e~A~kAI~amNg~elgG----r~LrV~kAi~pP 285 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGG----QYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHHHhCCCeeCC----eEEEEEecCCCc
Confidence 999999999999999999 789888776543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.9e-31 Score=216.72 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=141.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++|+++|+++|+.||+|.+|+|.. ++.++|||||+|.++++|++|+..|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999954 57889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCH
Q 026659 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSY 157 (235)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~ 157 (235)
+.... ....+|||+|||..+++++|.++|..||.|..+.+..+. ..|||||+|.+.
T Consensus 82 ~~~~~--------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~ 141 (352)
T TIGR01661 82 PSSDS--------------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKR 141 (352)
T ss_pred ccccc--------------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 53321 124589999999999999999999999999999998764 357999999999
Q ss_pred HHHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 158 ~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
++|..|+..|||..+.|... .|.+....
T Consensus 142 ~~A~~ai~~l~g~~~~g~~~--~i~v~~a~ 169 (352)
T TIGR01661 142 DEADRAIKTLNGTTPSGCTE--PITVKFAN 169 (352)
T ss_pred HHHHHHHHHhCCCccCCCce--eEEEEECC
Confidence 99999999999999987433 45555543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=4.8e-30 Score=209.50 Aligned_cols=181 Identities=24% Similarity=0.316 Sum_probs=142.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~ 79 (235)
..++|||+|||+.+++++|..+|+.||.|..+.+.. ++.++|||||+|.+.++|+.|+..|||..+.| ..|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999998854 46789999999999999999999999998877 6788888
Q ss_pred ccCCCCCCCCC-------------CC-CCC----------------------------------------------CCCC
Q 026659 80 AHGGRRHSSSM-------------DR-YSS----------------------------------------------YSSG 99 (235)
Q Consensus 80 ~~~~~~~~~~~-------------~~-~~~----------------------------------------------~~~~ 99 (235)
+.......... .. ... ....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 86443110000 00 000 0000
Q ss_pred C------------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHH
Q 026659 100 G------------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYA 163 (235)
Q Consensus 100 ~------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a 163 (235)
. ........+.+|||.|||..+++++|.++|.+||.|..++++.+. .+|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0 000001223479999999999999999999999999999999886 457999999999999999
Q ss_pred HHHhcCCeecCccceeEEEEeecCCC
Q 026659 164 IRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 164 ~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
+..|||..+.| +.|+|.....+
T Consensus 328 i~~lnG~~~~g----r~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGYTLGN----RVLQVSFKTNK 349 (352)
T ss_pred HHHhCCCEECC----eEEEEEEccCC
Confidence 99999999999 78888776543
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.2e-30 Score=218.31 Aligned_cols=171 Identities=20% Similarity=0.280 Sum_probs=143.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
++.++|||+|||+.+++++|+++|++||+|.+|.++. ++.++|||||+|.+.++|.+|+. |+|..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 5688999999999999999999999999999999954 57889999999999999999998 9999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcC
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~ 156 (235)
............ . .....+...+|||+|||..+++++|.++|..||.|..+.+..+.. .|||||+|.+
T Consensus 166 ~~~~~~~~~~~~---~-----~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 166 QAEKNRAAKAAT---H-----QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred chhhhhhhhccc---c-----cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 543322110000 0 000112267999999999999999999999999999999998754 3799999999
Q ss_pred HHHHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 157 ~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
.++|..|+..|||..+.| ..|+|....
T Consensus 238 ~e~A~~A~~~l~g~~i~g----~~i~v~~a~ 264 (457)
T TIGR01622 238 AEEAKEALEVMNGFELAG----RPIKVGYAQ 264 (457)
T ss_pred HHHHHHHHHhcCCcEECC----EEEEEEEcc
Confidence 999999999999999999 677777754
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.2e-31 Score=195.48 Aligned_cols=168 Identities=19% Similarity=0.320 Sum_probs=145.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.-.|||+.|.+.++-++|++.|.+||+|.+++++. |++++||+||.|.+.++|+.||..|||.+|++|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45699999999999999999999999999999954 689999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHH
Q 026659 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~ 162 (235)
+..... .+...-..-+....+.+++||++|++..+++++|++.|..||.|..|++.++.. |+||.|.+.|.|..
T Consensus 142 Kp~e~n----~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qG--YaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMN----GKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQG--YAFVRFETKEAAAH 215 (321)
T ss_pred CccccC----CCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccc--eEEEEecchhhHHH
Confidence 552111 111111112345667889999999999999999999999999999999998876 99999999999999
Q ss_pred HHHHhcCCeecCcccee
Q 026659 163 AIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 163 a~~~l~g~~~~g~~~~~ 179 (235)
||..+||+++.|+.+++
T Consensus 216 AIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRC 232 (321)
T ss_pred HHHHhcCceeCceEEEE
Confidence 99999999999965443
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1.4e-28 Score=206.79 Aligned_cols=176 Identities=23% Similarity=0.336 Sum_probs=136.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccC-CceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~~ 82 (235)
.++|||+|||+++++++|.++|++||+|.+|+|+. ++.++|||||+|.+.++|++|++.||+..+. |+.|.|..+..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 58999999999999999999999999999999864 5789999999999999999999999998884 67766654431
Q ss_pred CCC-----CC--------------------------CCCCCCC--CC-------------------CCC----C------
Q 026659 83 GRR-----HS--------------------------SSMDRYS--SY-------------------SSG----G------ 100 (235)
Q Consensus 83 ~~~-----~~--------------------------~~~~~~~--~~-------------------~~~----~------ 100 (235)
... .+ ....... .+ ... +
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 100 00 0000000 00 000 0
Q ss_pred -----C-C-CCCCCCCceEEEeCCCCCCCHHHHHHHHHhc--CCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCe
Q 026659 101 -----S-R-GVSRRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (235)
Q Consensus 101 -----~-~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~ 171 (235)
. . ........+|||+||+..+++++|+++|.+| |.|+.+.+.++ ||||+|.+.++|.+|++.|||..
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 0 0 0011234679999999999999999999999 99999988765 99999999999999999999999
Q ss_pred ecCccceeEEEEeecCCC
Q 026659 172 FRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 172 ~~g~~~~~~i~v~~~~~~ 189 (235)
|.| +.|+|..+.+.
T Consensus 294 i~G----r~I~V~~Akp~ 307 (578)
T TIGR01648 294 LEG----SEIEVTLAKPV 307 (578)
T ss_pred ECC----EEEEEEEccCC
Confidence 999 78888877554
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=5.3e-29 Score=209.93 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=140.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhc--CCCccCCceEEEEeccC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELAHG 82 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~i~v~~~~~ 82 (235)
|+++|||+|||+++++++|+++|++||+|..|.+.. .++||||+|.+.++|+.|+..| ++..+.|+.|.|.++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 688999999999999999999999999999999874 4799999999999999999864 77899999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHH
Q 026659 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~ 162 (235)
........ .. ........-..|+|.||++.+++++|.++|..||.|..+.+..+...++|||+|.+.++|.+
T Consensus 78 ~~~~~~~~-------~~-~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 78 QEIKRDGN-------SD-FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQH 149 (481)
T ss_pred cccccCCC-------Cc-ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHH
Confidence 43221110 00 00011122347999999999999999999999999999999888777899999999999999
Q ss_pred HHHHhcCCeecCccceeEEEEeecCC
Q 026659 163 AIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 163 a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
|++.|||..+.+.. ..+++..++.
T Consensus 150 A~~~Lng~~i~~~~--~~l~v~~sk~ 173 (481)
T TIGR01649 150 AKAALNGADIYNGC--CTLKIEYAKP 173 (481)
T ss_pred HHHHhcCCcccCCc--eEEEEEEecC
Confidence 99999999997632 3566655543
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=3.1e-29 Score=216.02 Aligned_cols=157 Identities=24% Similarity=0.393 Sum_probs=137.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
+|||+|||+++|+++|+++|++||+|.+|.|.. +++++|||||+|.+.++|++|+..||+..+.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999954 57789999999999999999999999999999999999975322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CccEEEEEEcCHHHHH
Q 026659 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMK 161 (235)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV~f~~~~~A~ 161 (235)
... .....+|||+|||..+++++|.++|+.||.|..|.+..+. .+|||||+|.+.++|.
T Consensus 82 ~~~------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~ 143 (562)
T TIGR01628 82 SLR------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAK 143 (562)
T ss_pred ccc------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHH
Confidence 110 1123479999999999999999999999999999998874 3579999999999999
Q ss_pred HHHHHhcCCeecCccceeEEEEeec
Q 026659 162 YAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 162 ~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
.|+..+||..+.| ..+.+...
T Consensus 144 ~Ai~~lng~~~~~----~~i~v~~~ 164 (562)
T TIGR01628 144 AAIQKVNGMLLND----KEVYVGRF 164 (562)
T ss_pred HHHHHhcccEecC----ceEEEecc
Confidence 9999999999999 56666443
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.8e-28 Score=206.69 Aligned_cols=183 Identities=21% Similarity=0.249 Sum_probs=142.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.++++|||+|||+ .+|+++|.++|+.||.|..|++..+ .+|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 3678999999998 6999999999999999999999765 379999999999999999999999999999999999875
Q ss_pred CCCCCCCC----CC---CCCCCCC--CCCC--------CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC--ceEEEEEe
Q 026659 83 GRRHSSSM----DR---YSSYSSG--GSRG--------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 143 (235)
Q Consensus 83 ~~~~~~~~----~~---~~~~~~~--~~~~--------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~--v~~~~~~~ 143 (235)
........ +. ...+... .+.. ...++..+|||.|||..+++++|+++|..||. +..+++..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 43221110 00 0011110 0111 11245678999999999999999999999998 77777754
Q ss_pred cC--CccEEEEEEcCHHHHHHHHHHhcCCeecCccc--eeEEEEeecCC
Q 026659 144 DR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS--RSYVRVREYDS 188 (235)
Q Consensus 144 ~~--~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~--~~~i~v~~~~~ 188 (235)
.. ..++|||+|.+.++|..|+..|||..+.++.. .-.+++..++.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 33 24699999999999999999999999998532 22577766644
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=4.6e-28 Score=206.86 Aligned_cols=177 Identities=19% Similarity=0.261 Sum_probs=135.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY------------GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~------------G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 70 (235)
++..++|||||||+.+|+++|.++|.++ +.|..+.+. ..+|||||+|.+.++|..||. |||..|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3567899999999999999999999975 244444443 458999999999999999996 999999
Q ss_pred CCceEEEEeccCCCCCCCCCCC-----CCC----CCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEE
Q 026659 71 DGYRLRVELAHGGRRHSSSMDR-----YSS----YSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (235)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~ 141 (235)
.|+.|.|.........+..... ... ...............+|||+|||..+++++|.++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999755433211100000 000 0000011112345679999999999999999999999999999999
Q ss_pred EecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 142 FRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 142 ~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
+.+. ..|||||+|.+.++|..|+..|||..+.| ..|.|..+.
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~----~~l~v~~a~ 373 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD----NKLHVQRAC 373 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEECc
Confidence 8764 45799999999999999999999999999 567776654
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1.9e-27 Score=203.01 Aligned_cols=178 Identities=20% Similarity=0.302 Sum_probs=138.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||..+|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 457999999999999999999999999999998853 57889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCC--CCCC-CCCC-----CCCCCCCCceEEEeCCCCCC----------CHHHHHHHHHhcCCceEEEEEe
Q 026659 82 GGRRHSSSMDRY--SSYS-SGGS-----RGVSRRSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFR 143 (235)
Q Consensus 82 ~~~~~~~~~~~~--~~~~-~~~~-----~~~~~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~g~v~~~~~~~ 143 (235)
............ .... .... ......+..+|+|.|+.... ..++|.++|.+||.|+.|.|..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 543322111100 0000 0000 01112355789999986421 2368999999999999999987
Q ss_pred cC-------CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 144 DR-------GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 144 ~~-------~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
+. ..|+|||+|.+.++|.+|+.+|||..|+| +.|.+...
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g----r~v~~~~~ 499 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFND----RVVVAAFY 499 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEe
Confidence 52 23699999999999999999999999999 56666543
No 14
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=184.39 Aligned_cols=146 Identities=28% Similarity=0.524 Sum_probs=134.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (235)
-.|||||||..+++.+|+.+|++||+|.+|.|+ +.||||..++...|..|+..|||..|.|..|.|+-++.+...
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 479999999999999999999999999999999 799999999999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHH
Q 026659 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~ 166 (235)
..+|+|+|+...++.+||++.|.+||.|+.+++.++ |+||.|+..++|..|+..
T Consensus 78 ----------------------stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 78 ----------------------STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred ----------------------ccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhc
Confidence 348999999999999999999999999999999998 999999999999999999
Q ss_pred hcCCeecCccceeEEEE
Q 026659 167 LDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 167 l~g~~~~g~~~~~~i~v 183 (235)
|+|+++.|+.....+..
T Consensus 132 l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLST 148 (346)
T ss_pred ccccccccceeeeeeec
Confidence 99999999655444443
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.1e-27 Score=206.52 Aligned_cols=178 Identities=19% Similarity=0.314 Sum_probs=143.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccC----CceEEEE
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRVE 78 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~i~v~ 78 (235)
..++|||+|||.++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999854 4678899999999999999999999999999 9999998
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CccEEEEEEc
Q 026659 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYT 155 (235)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV~f~ 155 (235)
++.......... ...+..............+|||+||+..+++++|.++|..||.|..+.++.+. .+|+|||+|.
T Consensus 257 ~a~~k~er~~~~--~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 257 RAQKRAEREAEL--RRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred cccChhhhHHHH--HhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 876543221000 00000000011123345689999999999999999999999999999999874 3479999999
Q ss_pred CHHHHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 156 ~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
+.++|.+|+..|||..+.| ..|.|..+.+
T Consensus 335 ~~~~A~~A~~~~~g~~~~g----k~l~V~~a~~ 363 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGG----KPLYVALAQR 363 (562)
T ss_pred CHHHHHHHHHHhcCCeeCC----ceeEEEeccC
Confidence 9999999999999999999 5676765543
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=8e-28 Score=189.37 Aligned_cols=174 Identities=24% Similarity=0.310 Sum_probs=136.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCcc-CCceEEEEecc
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-DGYRLRVELAH 81 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g~~i~v~~~~ 81 (235)
.|-||||.||.++.|++|..+|++.|+|-++.|+. +|.++|||||+|.+.+.|+.|++.||+..| .|+.|.|-.+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 68899999999999999999999999999999954 589999999999999999999999999988 68888877664
Q ss_pred CCCC------CC-------------------------CCCC----CC---------------------CCCCCCCCC---
Q 026659 82 GGRR------HS-------------------------SSMD----RY---------------------SSYSSGGSR--- 102 (235)
Q Consensus 82 ~~~~------~~-------------------------~~~~----~~---------------------~~~~~~~~~--- 102 (235)
..-. ++ ...+ +. ..+.--+..
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 2100 00 0000 00 000000000
Q ss_pred ----------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCee
Q 026659 103 ----------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (235)
Q Consensus 103 ----------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~ 172 (235)
......-..|||.||+.++|++.|.++|++||.|..|+.++| ||||.|.+.++|.+|++.+||+.|
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 001112246999999999999999999999999999999988 999999999999999999999999
Q ss_pred cCccceeEEEEeecC
Q 026659 173 RNAFSRSYVRVREYD 187 (235)
Q Consensus 173 ~g~~~~~~i~v~~~~ 187 (235)
.|. .|.+..++
T Consensus 319 dG~----~iEvtLAK 329 (506)
T KOG0117|consen 319 DGS----PIEVTLAK 329 (506)
T ss_pred cCc----eEEEEecC
Confidence 994 55554443
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.4e-27 Score=174.93 Aligned_cols=163 Identities=22% Similarity=0.338 Sum_probs=143.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..++|.|..||..+|++||+.+|...|+|++|++.. +|.+.||+||.|.++++|++|+..|||..+..+.|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 457899999999999999999999999999999954 68999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCH
Q 026659 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (235)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~ 157 (235)
+.... ..+..|||.+||...++.||+++|.+||.|...++.-|.. +|.|||.|+..
T Consensus 120 PSs~~--------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 120 PSSDS--------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred CChhh--------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 65432 2345899999999999999999999999998888887754 46999999999
Q ss_pred HHHHHHHHHhcCCeecCccceeEEEEeecCCC
Q 026659 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 158 ~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
.+|+.||..|||....|-.. .|.|+.+...
T Consensus 180 ~EAe~AIk~lNG~~P~g~te--pItVKFannP 209 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTE--PITVKFANNP 209 (360)
T ss_pred hHHHHHHHhccCCCCCCCCC--CeEEEecCCc
Confidence 99999999999999888433 5666666443
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=4.4e-26 Score=192.24 Aligned_cols=177 Identities=21% Similarity=0.323 Sum_probs=137.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.++|||+|||..+|+++|.++|+.||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999964 457899999999999999999999999999999999999753
Q ss_pred CCCCCCCCC----------------------------CCC----C-CC-------------CCC----------------
Q 026659 83 GRRHSSSMD----------------------------RYS----S-YS-------------SGG---------------- 100 (235)
Q Consensus 83 ~~~~~~~~~----------------------------~~~----~-~~-------------~~~---------------- 100 (235)
......... ... . .. ..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 211000000 000 0 00 000
Q ss_pred -----CCCC---CCCCCceEEEeCCCCCCC----------HHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHH
Q 026659 101 -----SRGV---SRRSDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (235)
Q Consensus 101 -----~~~~---~~~~~~~l~v~nl~~~~t----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~ 162 (235)
...+ .......|+|.||....+ .++|.+.|.+||.|+.+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0000 113456788999855443 3689999999999999999877778899999999999999
Q ss_pred HHHHhcCCeecCccceeEEEEeec
Q 026659 163 AIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 163 a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
|+..|||..|+| +.|.+...
T Consensus 426 A~~~lnGr~f~g----r~i~~~~~ 445 (457)
T TIGR01622 426 AFQALNGRYFGG----KMITAAFV 445 (457)
T ss_pred HHHHhcCcccCC----eEEEEEEE
Confidence 999999999999 56666543
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.9e-27 Score=184.73 Aligned_cols=166 Identities=20% Similarity=0.398 Sum_probs=140.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCC-ccCC--ceEEEE
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY-NFDG--YRLRVE 78 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g--~~i~v~ 78 (235)
+.-++|||-||..++|.||+++|++||.|.+|.|+. ++.++|+|||.|.+.++|.+|+..|++. .|.| .+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 345799999999999999999999999999999954 6789999999999999999999999985 4444 678888
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEc
Q 026659 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYT 155 (235)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~ 155 (235)
++...+..- ..+.+|||+-|+..++|.+++++|.+||.|++|.+++|.. +|+|||+|.
T Consensus 113 ~Ad~E~er~-------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fs 173 (510)
T KOG0144|consen 113 YADGERERI-------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFS 173 (510)
T ss_pred ccchhhhcc-------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEe
Confidence 887544321 2356899999999999999999999999999999999854 589999999
Q ss_pred CHHHHHHHHHHhcCCe-ecCccceeEEEEeecCCCCC
Q 026659 156 SYDDMKYAIRKLDRSE-FRNAFSRSYVRVREYDSRRS 191 (235)
Q Consensus 156 ~~~~A~~a~~~l~g~~-~~g~~~~~~i~v~~~~~~~s 191 (235)
+.+.|..||+.|||.. +.| +...+-|++++..+.
T Consensus 174 tke~A~~Aika~ng~~tmeG--cs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 174 TKEMAVAAIKALNGTQTMEG--CSQPLVVKFADTQKD 208 (510)
T ss_pred hHHHHHHHHHhhccceeecc--CCCceEEEecccCCC
Confidence 9999999999999986 445 234677777766553
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.7e-26 Score=167.63 Aligned_cols=177 Identities=25% Similarity=0.386 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~ 79 (235)
...+|||.+||+.+|..||+++|++||.|+.-.+. .++.++|.+||.|....+|+.|++.|||..-.| .+|.|++
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 35689999999999999999999999988876663 368899999999999999999999999988866 6799999
Q ss_pred ccCCCCCCCCCC----------CCC-----------------------CCCC---CC-------CCCCCCCCCceEEEeC
Q 026659 80 AHGGRRHSSSMD----------RYS-----------------------SYSS---GG-------SRGVSRRSDYRVLVTG 116 (235)
Q Consensus 80 ~~~~~~~~~~~~----------~~~-----------------------~~~~---~~-------~~~~~~~~~~~l~v~n 116 (235)
+..+........ +.. .+.+ ++ ..+.....+|+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 986643221100 000 0000 00 0112234679999999
Q ss_pred CCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 117 LPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 117 l~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
|.+++.+.-|.++|.+||.|..+++++|.. +|||||.+.+.++|..||..|||..+++ +.+.|..
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~----rvLQVsF 354 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD----RVLQVSF 354 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc----eEEEEEE
Confidence 999999999999999999999999999865 5799999999999999999999999999 4454443
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=3.2e-26 Score=160.32 Aligned_cols=160 Identities=24% Similarity=0.360 Sum_probs=138.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
+...+||||||+..++++.|.++|-+.|+|.++.++. +...+|||||+|.++++|+-|++.||...+.|++|+|.-+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4678999999999999999999999999999999955 5678999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceE-EEEEecCC----ccEEEEEEc
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRG----GMTGIVDYT 155 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~~~~~~----~~~~fV~f~ 155 (235)
..... ....+..+||+||.+.+.+..|.++|+.||.+.. ..++++.. +++|||.|.
T Consensus 87 s~~~~-------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 87 SAHQK-------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred ccccc-------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 72111 1233468999999999999999999999998876 36666654 359999999
Q ss_pred CHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 156 ~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
+.+.+.+|+..+||..+.. +.|.|...
T Consensus 148 sfeasd~ai~s~ngq~l~n----r~itv~ya 174 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCN----RPITVSYA 174 (203)
T ss_pred hHHHHHHHHHHhccchhcC----CceEEEEE
Confidence 9999999999999999998 55655544
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1e-25 Score=181.56 Aligned_cols=177 Identities=20% Similarity=0.304 Sum_probs=144.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
..||||++||+.++.++|.++|+.+|+|..+.+.. ++..+||+||.|.-.++++.|+...++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999999854 346799999999999999999999999999999999999986
Q ss_pred CCCCCCCCCC-C----CCCCCCCC-CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc---cEEEEE
Q 026659 83 GRRHSSSMDR-Y----SSYSSGGS-RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVD 153 (235)
Q Consensus 83 ~~~~~~~~~~-~----~~~~~~~~-~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fV~ 153 (235)
.......... . ....+... ......+.+.|.|.|||+.+...+|..+|+.||.|..+.|+....+ |||||+
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 5544321100 0 00111000 0111234789999999999999999999999999999999976544 699999
Q ss_pred EcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 154 YTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 154 f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
|.+..+|..|++.+||.++.| +.|-|+++
T Consensus 165 fk~~~dA~~Al~~~N~~~i~g----R~VAVDWA 193 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDG----RPVAVDWA 193 (678)
T ss_pred EeeHHHHHHHHHhccCceecC----ceeEEeee
Confidence 999999999999999999999 67777554
No 23
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.4e-25 Score=164.81 Aligned_cols=164 Identities=38% Similarity=0.612 Sum_probs=134.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (235)
..||||+||+.+.+.+|..||..||.|.++.|+ .||+||+|.+..+|..|+..||+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 579999999999999999999999999999998 699999999999999999999999999988999998854332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHH
Q 026659 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~ 166 (235)
.................++....+.+.|.+++..+.+++|.+.|..+|.+..... ..+++||+|...++|..|+..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchh
Confidence 2110000000012233456678889999999999999999999999999955544 233899999999999999999
Q ss_pred hcCCeecCccceeEEEE
Q 026659 167 LDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 167 l~g~~~~g~~~~~~i~v 183 (235)
|+|..+.+ +.|.+
T Consensus 153 l~~~~~~~----~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNG----RRISV 165 (216)
T ss_pred ccchhhcC----ceeee
Confidence 99999999 55655
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.1e-24 Score=173.07 Aligned_cols=177 Identities=21% Similarity=0.344 Sum_probs=136.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.-.|+|.|||+.|.+.+|..+|+.||.|.+|.|+. ++.-.|||||+|.+..+|..|+..|||..|+|++|.|+||.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 56799999999999999999999999999999954 5677799999999999999999999999999999999999755
Q ss_pred CCCCCCC---------------------CCCC-------------CC--CC-------------------CCC-C-----
Q 026659 84 RRHSSSM---------------------DRYS-------------SY--SS-------------------GGS-R----- 102 (235)
Q Consensus 84 ~~~~~~~---------------------~~~~-------------~~--~~-------------------~~~-~----- 102 (235)
....... +... .. .. ... .
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 3222100 0000 00 00 000 0
Q ss_pred ---------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHh--
Q 026659 103 ---------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKL-- 167 (235)
Q Consensus 103 ---------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l-- 167 (235)
......+.+|||.|||+++++++|.++|++||.|.++.++.++. .|.|||.|.++.+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 00011236899999999999999999999999999999987754 469999999999999999865
Q ss_pred ---cC-CeecCccceeEEEEeec
Q 026659 168 ---DR-SEFRNAFSRSYVRVREY 186 (235)
Q Consensus 168 ---~g-~~~~g~~~~~~i~v~~~ 186 (235)
.| ..|.| +.+.|..+
T Consensus 357 a~e~g~~ll~G----R~Lkv~~A 375 (678)
T KOG0127|consen 357 ASEDGSVLLDG----RLLKVTLA 375 (678)
T ss_pred cCCCceEEEec----cEEeeeec
Confidence 23 45666 55555443
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.8e-25 Score=172.29 Aligned_cols=169 Identities=20% Similarity=0.323 Sum_probs=141.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.|.||||.|.+.+.|+.|+..|..||+|++|.+.+ |++.+|||||+|+-+|.|..|++.|||..++|+.|+|....+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47899999999999999999999999999999954 689999999999999999999999999999999999984332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHH
Q 026659 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYD 158 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~ 158 (235)
-....+.- .........-++|||..+.++.+++||...|.-||+|++|.+.+++. +|||||+|.+..
T Consensus 193 mpQAQpiI---------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 193 MPQAQPII---------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred CcccchHH---------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecccc
Confidence 11110000 00001112335899999999999999999999999999999998865 469999999999
Q ss_pred HHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 159 ~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
....|+..||-..++| .+++|...-
T Consensus 264 s~~eAiasMNlFDLGG----QyLRVGk~v 288 (544)
T KOG0124|consen 264 SQSEAIASMNLFDLGG----QYLRVGKCV 288 (544)
T ss_pred chHHHhhhcchhhccc----ceEeccccc
Confidence 9999999999999999 788886543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-22 Score=164.15 Aligned_cols=147 Identities=25% Similarity=0.349 Sum_probs=130.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (235)
..|||| +++|+..|.++|+.+|+|.++.+-.+-.+.|||||.|.++++|.+|+..||...+.|++|.+.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 479999 899999999999999999999993321399999999999999999999999999999999999987422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc--cEEEEEEcCHHHHHHHH
Q 026659 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAI 164 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~--~~~fV~f~~~~~A~~a~ 164 (235)
..+||.||++.++..+|.++|+.||.|.+|++..+.++ || ||+|++.++|.+|+
T Consensus 77 -----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 77 -----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAI 132 (369)
T ss_pred -----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHH
Confidence 12999999999999999999999999999999988654 68 99999999999999
Q ss_pred HHhcCCeecCccceeEEEEeec
Q 026659 165 RKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 165 ~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
..+||..+.| ..|.+...
T Consensus 133 ~~~ng~ll~~----kki~vg~~ 150 (369)
T KOG0123|consen 133 EKLNGMLLNG----KKIYVGLF 150 (369)
T ss_pred HHhcCcccCC----CeeEEeec
Confidence 9999999999 45555443
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=167.76 Aligned_cols=159 Identities=23% Similarity=0.423 Sum_probs=134.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CC----CCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PP----RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~----~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
.++|||.||++++|.++|..+|...|.|..+.|.. ++ .+.|||||+|.++++|+.|++.|+|..++|..|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 34499999999999999999999999999998833 32 2459999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEec----CCccEEEEEEc
Q 026659 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----RGGMTGIVDYT 155 (235)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~----~~~~~~fV~f~ 155 (235)
+........ +...+.....+.|+|.|+|...+..+++++|..||.+..+.++.. ...|||||+|-
T Consensus 595 S~~k~~~~~-----------gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~ 663 (725)
T KOG0110|consen 595 SENKPASTV-----------GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFL 663 (725)
T ss_pred ccCcccccc-----------ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeecc
Confidence 983222111 111222333578999999999999999999999999999999865 23468999999
Q ss_pred CHHHHHHHHHHhcCCeecCc
Q 026659 156 SYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 156 ~~~~A~~a~~~l~g~~~~g~ 175 (235)
++.+|..|+.+|.++.+.|+
T Consensus 664 t~~ea~nA~~al~STHlyGR 683 (725)
T KOG0110|consen 664 TPREAKNAFDALGSTHLYGR 683 (725)
T ss_pred CcHHHHHHHHhhcccceech
Confidence 99999999999999999994
No 28
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.89 E-value=1.8e-21 Score=141.71 Aligned_cols=173 Identities=22% Similarity=0.331 Sum_probs=140.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 026659 1 MSSRSSRTLYVGNLPGDTRMREVED----LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (235)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~~----~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (235)
|+..++.||||.||+..+..++|+. +|++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|..|.|+.+.
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445777999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCC-----------------------CCCCCCC--C----CCC-CCCCCCCCceEEEeCCCCCCCHHHH
Q 026659 77 VELAHGGRRHSSSM-----------------------DRYSSYS--S----GGS-RGVSRRSDYRVLVTGLPSSASWQDL 126 (235)
Q Consensus 77 v~~~~~~~~~~~~~-----------------------~~~~~~~--~----~~~-~~~~~~~~~~l~v~nl~~~~t~~~l 126 (235)
|.||..+...-... +..+.+. . +.. .....++...+++.|||..++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 99997442211110 0000000 0 000 1223567789999999999999999
Q ss_pred HHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 127 ~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
..+|.+|.....+.++.... +.|||+|.+...|..|...++|..+.-
T Consensus 164 ~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred HHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceecc
Confidence 99999999998888876543 489999999999999999999998873
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5e-22 Score=147.57 Aligned_cols=139 Identities=22% Similarity=0.346 Sum_probs=117.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
|.+.+.++||||||+.++||+-|..||++.|.|..++|+.+ .|+|.|+
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 56788999999999999999999999999999999999754 4666676
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcC
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~ 156 (235)
..+...+. +....-..+||+.|...++-++|++.|.+||+|..+++++|.. +|||||.|.+
T Consensus 49 ~~p~nQsk---------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 49 TAPGNQSK---------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred cCcccCCC---------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 65422221 1111134699999999999999999999999999999999965 4799999999
Q ss_pred HHHHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 157 ~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
.++|+.||..|||..|++ +.||...+.+++
T Consensus 114 k~dAEnAI~~MnGqWlG~----R~IRTNWATRKp 143 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGR----RTIRTNWATRKP 143 (321)
T ss_pred hHHHHHHHHHhCCeeecc----ceeeccccccCc
Confidence 999999999999999999 788888776666
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.9e-21 Score=155.93 Aligned_cols=169 Identities=22% Similarity=0.350 Sum_probs=141.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.++...|||.||+++++..+|.++|+.||+|.+|++..+ ..++|| ||+|.+++.|++|+..|||..+.|+.|.|....
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 356666999999999999999999999999999999543 348999 999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHH
Q 026659 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYD 158 (235)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~ 158 (235)
......... .. ....-..+++.|++..++++.|.++|..+|.|..+.++.+.. .+|+||.|.+.+
T Consensus 152 ~~~er~~~~-----------~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e 219 (369)
T KOG0123|consen 152 RKEEREAPL-----------GE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPE 219 (369)
T ss_pred chhhhcccc-----------cc-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChh
Confidence 654432210 01 223345789999999999999999999999999999998754 469999999999
Q ss_pred HHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 159 ~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
+|..|+..||+..+.+ ..+.|..+..
T Consensus 220 ~a~~av~~l~~~~~~~----~~~~V~~aqk 245 (369)
T KOG0123|consen 220 DAKKAVETLNGKIFGD----KELYVGRAQK 245 (369)
T ss_pred HHHHHHHhccCCcCCc----cceeeccccc
Confidence 9999999999999997 4555554443
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=1.1e-19 Score=153.75 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..++|||+|||+++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..||+..++|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 357999999999999999999999999999999954 46789999999999999999999999999999999999886
Q ss_pred C
Q 026659 82 G 82 (235)
Q Consensus 82 ~ 82 (235)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 32
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3.9e-21 Score=142.74 Aligned_cols=173 Identities=20% Similarity=0.292 Sum_probs=135.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCC-ccCC--ceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGY-NFDG--YRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g--~~i~v~~ 79 (235)
+.++||||.|.+.-.|||++.+|..||+|.+|.+.. ++.++|+|||.|.+..+|..||..|+|. .+.| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 578999999999999999999999999999999965 6889999999999999999999999995 4444 6789999
Q ss_pred ccCCCCCCC-----------------------------------------------------------------------
Q 026659 80 AHGGRRHSS----------------------------------------------------------------------- 88 (235)
Q Consensus 80 ~~~~~~~~~----------------------------------------------------------------------- 88 (235)
+...++..-
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 862211000
Q ss_pred ----------CC-------------CCCCCC--------CCCC-------------------------------------
Q 026659 89 ----------SM-------------DRYSSY--------SSGG------------------------------------- 100 (235)
Q Consensus 89 ----------~~-------------~~~~~~--------~~~~------------------------------------- 100 (235)
.. .....+ .++.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00 000000 0000
Q ss_pred -----------C--------CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCH
Q 026659 101 -----------S--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (235)
Q Consensus 101 -----------~--------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~ 157 (235)
. ....-+++|.|||-.||....+.||..+|-.||.|++.++.-|.. +.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0 000113678999999999999999999999999999999887753 46999999999
Q ss_pred HHHHHHHHHhcCCeecCccc
Q 026659 158 DDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 158 ~~A~~a~~~l~g~~~~g~~~ 177 (235)
.+|+.||..|||..|+=+.+
T Consensus 338 ~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhHHHHHHHhcchhhhhhhh
Confidence 99999999999999987433
No 33
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1e-20 Score=131.98 Aligned_cols=79 Identities=49% Similarity=0.812 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
-++.||||||+..+++.||+.+|..||+|..|+|-. .+.|||||+|+++.+|+.|+..|+|..|.|..|.|+++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 478999999999999999999999999999999964 458999999999999999999999999999999999998654
Q ss_pred C
Q 026659 85 R 85 (235)
Q Consensus 85 ~ 85 (235)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 3
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.2e-20 Score=148.58 Aligned_cols=79 Identities=29% Similarity=0.444 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCC-ccCC--ceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGY-NFDG--YRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g--~~i~v~~ 79 (235)
++++||||.|++.+||.+++++|++||.|++|.|.. ++.++|+|||.|.+.+.|..|++.|||. .+.| .+|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 368899999999999999999999999999999966 5789999999999999999999999995 4444 7899999
Q ss_pred ccCC
Q 026659 80 AHGG 83 (235)
Q Consensus 80 ~~~~ 83 (235)
|.++
T Consensus 203 ADtq 206 (510)
T KOG0144|consen 203 ADTQ 206 (510)
T ss_pred cccC
Confidence 9744
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=1.5e-21 Score=158.08 Aligned_cols=168 Identities=20% Similarity=0.300 Sum_probs=138.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
+++.++||+.-|+..+++.+|+++|+.+|+|.+|.++. ++.++|.|||+|.+.++...|+. |.|+.+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 46778999999999999999999999999999999954 56889999999999999999997 999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEc
Q 026659 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYT 155 (235)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~ 155 (235)
....+.... .........+.. .+...|||+||..++++++|..+|..||.|..+.+..+. .+|||||+|.
T Consensus 255 sEaeknr~a--~~s~a~~~k~~~----~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 255 SEAEKNRAA--NASPALQGKGFT----GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred cHHHHHHHH--hccccccccccc----cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 764433211 000001111111 112239999999999999999999999999999999885 3479999999
Q ss_pred CHHHHHHHHHHhcCCeecCccc
Q 026659 156 SYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 156 ~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
+.++|..|+.+|||..+.|...
T Consensus 329 ~~~~ar~a~e~lngfelAGr~i 350 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLI 350 (549)
T ss_pred cHHHHHHHHHHhccceecCceE
Confidence 9999999999999999999543
No 36
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=3.7e-20 Score=129.27 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=69.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
.+++|||+||+..+++.||+.+|..||.+..+.|.. ...|||||+|+++.+|+.|+..|+|+.|.| ..|+|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccC----ceEEEEeec
Confidence 367999999999999999999999999999999998 455799999999999999999999999999 778887654
Q ss_pred C
Q 026659 188 S 188 (235)
Q Consensus 188 ~ 188 (235)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=4.3e-20 Score=144.33 Aligned_cols=168 Identities=20% Similarity=0.319 Sum_probs=138.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 026659 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (235)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (235)
|+..+.++||||+|+++++++.|+..|.+||+|.+|.++. ++.+++|+||+|++++...+++. .....|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 4556899999999999999999999999999999999954 68899999999999999999987 5667899999999
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEE
Q 026659 78 ELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVD 153 (235)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~ 153 (235)
+.+.+........ .......+||++||..++++++++.|.+||.|..+.++.|.. .+|+||+
T Consensus 80 k~av~r~~~~~~~--------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~ 145 (311)
T KOG4205|consen 80 KRAVSREDQTKVG--------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVT 145 (311)
T ss_pred eeccCcccccccc--------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeE
Confidence 9888655433210 011456899999999999999999999999999888888754 4699999
Q ss_pred EcCHHHHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 154 YTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 154 f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
|.+.+.+.+++ ..+-..|++ ..+.|..+-+
T Consensus 146 ~~~e~sVdkv~-~~~f~~~~g----k~vevkrA~p 175 (311)
T KOG4205|consen 146 FDSEDSVDKVT-LQKFHDFNG----KKVEVKRAIP 175 (311)
T ss_pred eccccccceec-ccceeeecC----ceeeEeeccc
Confidence 99999999987 466677777 3444444433
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=1.2e-19 Score=128.39 Aligned_cols=83 Identities=29% Similarity=0.490 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
..+++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|+.|+..||+..|.|+.|.|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3578999999999999999999999999999999954 5788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
......
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 865543
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=1.2e-19 Score=147.05 Aligned_cols=172 Identities=22% Similarity=0.338 Sum_probs=129.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
|...||||||..++++++|+.+|+.||.|+.|.+.. +|.++||+||+|.+.++|.+|+..|||..+.|+.|.|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 455599999999999999999999999999999943 78999999999999999999999999999999999988765
Q ss_pred CCCCCCCCC---------C-CCCCCCCCC------------------------------------------CCCCCC---
Q 026659 82 GGRRHSSSM---------D-RYSSYSSGG------------------------------------------SRGVSR--- 106 (235)
Q Consensus 82 ~~~~~~~~~---------~-~~~~~~~~~------------------------------------------~~~~~~--- 106 (235)
..-..+... + .+-..+..+ ....+.
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 332222110 0 000000000 000111
Q ss_pred ----CCCceEEEeCCCCCCC----------HHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCee
Q 026659 107 ----RSDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (235)
Q Consensus 107 ----~~~~~l~v~nl~~~~t----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~ 172 (235)
.+..++.+.|+-...+ .+++.+.+.+||.|..|.+..+.. |+.||.|.+.+.|..|+.+|||..|
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhh
Confidence 2334566666632221 467888889999999888876655 8999999999999999999999999
Q ss_pred cCccc
Q 026659 173 RNAFS 177 (235)
Q Consensus 173 ~g~~~ 177 (235)
.|+.+
T Consensus 516 ~gr~I 520 (549)
T KOG0147|consen 516 AGRMI 520 (549)
T ss_pred cccee
Confidence 99644
No 40
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.81 E-value=9.2e-19 Score=126.90 Aligned_cols=170 Identities=22% Similarity=0.320 Sum_probs=129.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCC----CCCeEEEEecCHHHHHHHHHhcCCCccC---CceEEE
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPR----PPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRV 77 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~----~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~i~v 77 (235)
.-+||||.+||.++..-+|+.+|..|--.+.+.++.+.+ .+.+||+.|.+...|.+|+..|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 368999999999999999999999997777777766543 3489999999999999999999999994 789999
Q ss_pred EeccCCCCCCCCCCCC-------------------CCC--------C-----CCCCC-CC--------------------
Q 026659 78 ELAHGGRRHSSSMDRY-------------------SSY--------S-----SGGSR-GV-------------------- 104 (235)
Q Consensus 78 ~~~~~~~~~~~~~~~~-------------------~~~--------~-----~~~~~-~~-------------------- 104 (235)
++++............ ... . ..+.. ..
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9987432211110000 000 0 00000 00
Q ss_pred -------------CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCe
Q 026659 105 -------------SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (235)
Q Consensus 105 -------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~ 171 (235)
....-.+|||-||..++++++|+.+|+.|......++.....-..||++|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0001137999999999999999999999999887777765555689999999999999999999998
Q ss_pred ecC
Q 026659 172 FRN 174 (235)
Q Consensus 172 ~~g 174 (235)
+..
T Consensus 273 ~s~ 275 (284)
T KOG1457|consen 273 LSS 275 (284)
T ss_pred ecc
Confidence 864
No 41
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.81 E-value=3.9e-18 Score=131.07 Aligned_cols=181 Identities=19% Similarity=0.247 Sum_probs=139.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (235)
.-++.|||.|||.++|.+++.++|++||.|.. |+|+. .|..+|-|.|.|-..+++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34678999999999999999999999997764 55643 588999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCCCCCCC----------------CCCCCCCC--CCCCCCCCceEEEeCCCCCC----C-------HH
Q 026659 74 RLRVELAHGGRRHSSSMDRY----------------SSYSSGGS--RGVSRRSDYRVLVTGLPSSA----S-------WQ 124 (235)
Q Consensus 74 ~i~v~~~~~~~~~~~~~~~~----------------~~~~~~~~--~~~~~~~~~~l~v~nl~~~~----t-------~~ 124 (235)
.|+|+.|+-........... ..+.-.+. .+......++|.+.|+-... + ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 99999987432221111000 00000111 12234566789999984321 2 56
Q ss_pred HHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 125 ~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
+|.+-+.+||.|..+.+.-..+.|.+.|.|.+.++|..+++.|+|+.+.| +.|...-.++
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg----Rql~A~i~DG 351 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG----RQLTASIWDG 351 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecc----eEEEEEEeCC
Confidence 78888999999999999888888999999999999999999999999999 5665544443
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.79 E-value=9.4e-18 Score=134.56 Aligned_cols=165 Identities=23% Similarity=0.298 Sum_probs=126.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
...-|-+.+|||+||++||+++|+.++ |+++.+.. +++..|-|||+|.+++++++|++ .+...+..+-|.|..+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 455678889999999999999999985 88887765 59999999999999999999999 8888899999999988765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceE-EEEEec---CCccEEEEEEcCHHH
Q 026659 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---RGGMTGIVDYTSYDD 159 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~~~~---~~~~~~fV~f~~~~~ 159 (235)
...-. ... ..+......-.|.+.+||+.++++||.++|...-.|.. +.++.+ +..+.|||+|++++.
T Consensus 87 e~d~~-~~~--------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 87 EADWV-MRP--------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccccc-ccC--------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 44211 000 00111135568999999999999999999997655554 334444 345799999999999
Q ss_pred HHHHHHHhcCCeecCccceeEEEEee
Q 026659 160 MKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 160 A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
|+.|+. -|...|+. ++|.|..
T Consensus 158 ae~Al~-rhre~iGh----RYIEvF~ 178 (510)
T KOG4211|consen 158 AEIALG-RHRENIGH----RYIEVFR 178 (510)
T ss_pred HHHHHH-HHHHhhcc----ceEEeeh
Confidence 999984 45555554 7777744
No 43
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.78 E-value=2.4e-18 Score=123.31 Aligned_cols=80 Identities=39% Similarity=0.600 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..++|.|.||.+.++.++|..+|++||.|-+|.|+. |+.++|||||-|.+..+|+.|++.|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 468899999999999999999999999999999954 68899999999999999999999999999999999999988
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
-..
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 544
No 44
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.78 E-value=2e-18 Score=123.76 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=69.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
+.......|.|.||.+.++.++|..+|++||.|.+|.|..|.. .|||||.|....+|+.|+++|+|.+|+| +
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg----R 83 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG----R 83 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc----c
Confidence 4445667899999999999999999999999999999999865 4799999999999999999999999999 5
Q ss_pred EEEEeec
Q 026659 180 YVRVREY 186 (235)
Q Consensus 180 ~i~v~~~ 186 (235)
.|+|..+
T Consensus 84 elrVq~a 90 (256)
T KOG4207|consen 84 ELRVQMA 90 (256)
T ss_pred eeeehhh
Confidence 6666443
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=4.9e-19 Score=117.29 Aligned_cols=80 Identities=36% Similarity=0.537 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
+.+++||||||+..++|++|.++|+++|+|..|.| ..+..+.|||||+|...++|..|+..++|..++.+.|.++|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999999998 446778999999999999999999999999999999999997
Q ss_pred cCC
Q 026659 81 HGG 83 (235)
Q Consensus 81 ~~~ 83 (235)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 643
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.77 E-value=4.2e-17 Score=127.93 Aligned_cols=176 Identities=19% Similarity=0.231 Sum_probs=141.5
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 6 SRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 6 ~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
++.|.|.||... +|++.|..+|.-||.|..|+|...+ +..|+|+|.+...|..|+..|+|..+.|+.|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 688899999876 8999999999999999999997655 3779999999999999999999999999999999998765
Q ss_pred CCCCCCCCCC-----CCC--------CCCC--CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccE
Q 026659 85 RHSSSMDRYS-----SYS--------SGGS--RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT 149 (235)
Q Consensus 85 ~~~~~~~~~~-----~~~--------~~~~--~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~ 149 (235)
...+...... .+. .++. +....++..+|++.|+|..+++++|+.+|...|..+.......+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 5444321110 111 1111 112235667999999999999999999999999887777766666669
Q ss_pred EEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 150 GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 150 ~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
|++++.+.++|..|+-.+|+..++.. --+||.+.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen---~hlRvSFS 488 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN---HHLRVSFS 488 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC---ceEEEEee
Confidence 99999999999999999999999874 35666554
No 47
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=138.80 Aligned_cols=172 Identities=20% Similarity=0.256 Sum_probs=132.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
+..+.|+|+|||..+..++|...|..||+|..+.|+.. ---|+|+|.++.+|..|+..|....+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 45688999999999999999999999999999966532 234999999999999999999999999999999998643
Q ss_pred CCCCC--CCCC-----C----------CCCCCCCC--CC-----------CCCCCCceEEEeCCCCCCCHHHHHHHHHhc
Q 026659 84 RRHSS--SMDR-----Y----------SSYSSGGS--RG-----------VSRRSDYRVLVTGLPSSASWQDLKDHMRRA 133 (235)
Q Consensus 84 ~~~~~--~~~~-----~----------~~~~~~~~--~~-----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~ 133 (235)
.-... ...- . ....+.-. .. ......+.|||.||++.++.++|..+|...
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 32211 0000 0 00000000 00 001122349999999999999999999999
Q ss_pred CCceEEEEEecCCc-------cEEEEEEcCHHHHHHHHHHhcCCeecCccce
Q 026659 134 GDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (235)
Q Consensus 134 g~v~~~~~~~~~~~-------~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~ 178 (235)
|.|..+.|...... |||||+|.+.++|..|+..|+|+.+.|+.+.
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 99999988765433 8999999999999999999999999996443
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=126.47 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|+.|+. |||..|.|+.|.|.++....
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 36899999999999999999999999999999998777778999999999999999996 99999999999999987554
Q ss_pred C
Q 026659 85 R 85 (235)
Q Consensus 85 ~ 85 (235)
.
T Consensus 82 ~ 82 (260)
T PLN03120 82 L 82 (260)
T ss_pred C
Confidence 3
No 49
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.75 E-value=1.6e-18 Score=135.03 Aligned_cols=168 Identities=16% Similarity=0.122 Sum_probs=124.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC------CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (235)
.....|.|.||.+.+|.++|+.||...|+|.++.|+.+ ......|||.|.+...+..|.+ |.+.+|-++.|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 34568999999999999999999999999999999652 2345789999999999999999 8888888888888
Q ss_pred EeccCCCCCCC--------CCCCCCCCCCCC-----------------CC-CCCCC----------CCceEEEeCCCCCC
Q 026659 78 ELAHGGRRHSS--------SMDRYSSYSSGG-----------------SR-GVSRR----------SDYRVLVTGLPSSA 121 (235)
Q Consensus 78 ~~~~~~~~~~~--------~~~~~~~~~~~~-----------------~~-~~~~~----------~~~~l~v~nl~~~~ 121 (235)
.+......+.. ...-+....+.+ -. .|+.+ -..+++|++|+..+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 77653322111 000000000000 00 01111 12469999999999
Q ss_pred CHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeec
Q 026659 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (235)
Q Consensus 122 t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~ 173 (235)
...++.+.|..+|+|.+..+......-+|.++|........|+. ++|..+.
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999999999999988877766688899999998888884 6666653
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.75 E-value=3.8e-18 Score=106.47 Aligned_cols=68 Identities=41% Similarity=0.748 Sum_probs=64.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 026659 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (235)
|||+|||+++|+++|.++|++||.|..+.+.. ++..+++|||+|.+.++|+.|+..|||..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999955 577899999999999999999999999999999875
No 51
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.75 E-value=1.4e-17 Score=140.69 Aligned_cols=129 Identities=22% Similarity=0.259 Sum_probs=100.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
..++|||+||++++++++|+++|++| |.|+.|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.|+.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 35789999999999999999999999 999999876 68999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCC--------CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceE
Q 026659 83 GRRHSSSMDRYSSYSSG--------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF 138 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~ 138 (235)
........-....-... .......+...++++.|+++..+++-+.++|..+|.+..
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCccccC
Confidence 54321100000000000 001122345678999999999999999999999887543
No 52
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=4.2e-17 Score=123.14 Aligned_cols=87 Identities=34% Similarity=0.566 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
++|=+||||+-|+++++|..|+..|+.||+|+.|.|+ .|++++|||||+|.++.+...|++..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4678999999999999999999999999999999994 4799999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 026659 80 AHGGRRHSSS 89 (235)
Q Consensus 80 ~~~~~~~~~~ 89 (235)
-.......+.
T Consensus 178 ERgRTvkgW~ 187 (335)
T KOG0113|consen 178 ERGRTVKGWL 187 (335)
T ss_pred cccccccccc
Confidence 8766655543
No 53
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.71 E-value=1e-16 Score=119.30 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
...+|||+||++.+|+++|+++|+.||+|.+|.|..++...+||||+|.++++|+.|+. |+|..|.++.|.|..+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 56899999999999999999999999999999999888888999999999999999997 99999999999999987544
Q ss_pred C
Q 026659 85 R 85 (235)
Q Consensus 85 ~ 85 (235)
.
T Consensus 83 ~ 83 (243)
T PLN03121 83 D 83 (243)
T ss_pred c
Confidence 3
No 54
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.70 E-value=1e-15 Score=121.33 Aligned_cols=169 Identities=25% Similarity=0.359 Sum_probs=130.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.+.+||.|||+++...+|++||. +.|+|+.|.+.. .++++|+|.|+|+++|.+++|++.||...+.|++|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46699999999999999999997 468999999965 589999999999999999999999999999999999997653
Q ss_pred CCCCCCC-----------------------------------------CCCCC-------------------CCCCCCC-
Q 026659 83 GRRHSSS-----------------------------------------MDRYS-------------------SYSSGGS- 101 (235)
Q Consensus 83 ~~~~~~~-----------------------------------------~~~~~-------------------~~~~~~~- 101 (235)
....... .++.+ .|.....
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 2110000 00000 0000000
Q ss_pred ----CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 102 ----RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 102 ----~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
....++.-..+||.||.+.+....|.+.|.-.|.++.+.+--|+ .++++.++|.++-+|-+||..+++..+.+
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 01122333579999999999999999999999999998887664 34799999999999999999999866544
No 55
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=2e-16 Score=101.01 Aligned_cols=80 Identities=36% Similarity=0.468 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
-++-|||.|||.++|.+++.++|.+||.|.+|.+-.+...+|.|||.|.+..+|.+|+.+|+|..+.++.|.|-+..+.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 35779999999999999999999999999999997777779999999999999999999999999999999999876543
No 56
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.68 E-value=1.6e-15 Score=119.81 Aligned_cols=140 Identities=28% Similarity=0.479 Sum_probs=108.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.++|||+|||+++|+++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999998854 578999999999999999999999999999999999999754
Q ss_pred -CCCCCCCCCC-CCCC--CCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC
Q 026659 83 -GRRHSSSMDR-YSSY--SSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR 145 (235)
Q Consensus 83 -~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~ 145 (235)
.......... .... ...............+++.+++..+...++...|..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 1110000000 0000 0011122334556789999999999999999999999999666555443
No 57
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=7.6e-18 Score=118.42 Aligned_cols=83 Identities=30% Similarity=0.522 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.++.-|||||||+..||.||..+|++||+|.+|.+. .||+++||||+.|++..+...|+..|||..+.|+.|.|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 356789999999999999999999999999999995 47999999999999999999999999999999999999998
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
...+.+
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 765544
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.9e-16 Score=115.53 Aligned_cols=80 Identities=38% Similarity=0.602 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
+++++|-|.||+.++++++|++||..||.|..|.| ..||.++|||||.|...++|.+|+..|||.-++.--|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 47899999999999999999999999999999999 457999999999999999999999999999999999999999
Q ss_pred cCC
Q 026659 81 HGG 83 (235)
Q Consensus 81 ~~~ 83 (235)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 59
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=3e-16 Score=128.84 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=128.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..+.+||++||...+++++.++...||.+....+.. ++.++||||.+|.++..+..|+..|||+.+++..|.|..|-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457899999999999999999999999999988843 57899999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCC--CCCCCCCCC--CCCCCCCCceEEEeCCC--CCC-C-------HHHHHHHHHhcCCceEEEEEec-C-
Q 026659 82 GGRRHSSSMDR--YSSYSSGGS--RGVSRRSDYRVLVTGLP--SSA-S-------WQDLKDHMRRAGDVCFSQVFRD-R- 145 (235)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~l~v~nl~--~~~-t-------~~~l~~~f~~~g~v~~~~~~~~-~- 145 (235)
........... ......-.. ......+...|.+.|+= ... . .++++..+.+||.|..|.+.++ .
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 55433221111 000000000 11222333445555431 111 1 2345556678999999999887 2
Q ss_pred -----CccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 146 -----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 146 -----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
+.|..||+|.+.+++++|+++|+|.++.++++
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 23689999999999999999999999999655
No 60
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=6.1e-15 Score=104.40 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=73.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
.....++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.||+..+.| +.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~ 105 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RH 105 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 345567899999999999999999999999999999998753 5799999999999999999999999999 78
Q ss_pred EEEeecCCCCC
Q 026659 181 VRVREYDSRRS 191 (235)
Q Consensus 181 i~v~~~~~~~s 191 (235)
|+|.....++.
T Consensus 106 l~V~~a~~~~~ 116 (144)
T PLN03134 106 IRVNPANDRPS 116 (144)
T ss_pred EEEEeCCcCCC
Confidence 88887765543
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=3e-16 Score=97.85 Aligned_cols=68 Identities=32% Similarity=0.664 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC--CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 026659 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (235)
|||+|||+++++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..++|..+.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999543 56789999999999999999999999999999874
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.1e-14 Score=113.25 Aligned_cols=75 Identities=24% Similarity=0.478 Sum_probs=69.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.|||..+.++.+++||+.+|+.||+|..|.+-. .+..+||+||+|.+..+...|+..||-..++|..|.|.-+.
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 6799999999999999999999999999999943 45789999999999999999999999999999999998765
No 63
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=9.1e-16 Score=123.53 Aligned_cols=81 Identities=31% Similarity=0.495 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~ 79 (235)
..++|||+|||+++|+++|+++|++||+|+.+.+.. ++.+++||||+|.+.++|++|+..||+..+.+ +.|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 57889999999999999999999999998866 6899999
Q ss_pred ccCCCC
Q 026659 80 AHGGRR 85 (235)
Q Consensus 80 ~~~~~~ 85 (235)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 875443
No 64
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3.9e-16 Score=114.40 Aligned_cols=76 Identities=26% Similarity=0.412 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
-++||||||+|.++.+.|++.|++||+|++..++ .+++++||+||+|.+.++|.+|++ -.+-.|+||+-.|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 3689999999999999999999999999998884 478999999999999999999998 445678999999999875
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=1.2e-15 Score=122.74 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCH--HHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY--RDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~--~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
....+||||||++.+|+++|..+|..||.|..|.|+.... +|||||+|... .++.+|+..|||..|.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4568999999999999999999999999999999975332 99999999987 78999999999999999999999997
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=8.8e-16 Score=117.48 Aligned_cols=80 Identities=24% Similarity=0.448 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
...++|+|.|||....+-||...|.+||+|.+|.|+. +..+|||+||+|+++++|++|-.+|||..+.||+|+|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3468899999999999999999999999999999965 467999999999999999999999999999999999999875
Q ss_pred C
Q 026659 83 G 83 (235)
Q Consensus 83 ~ 83 (235)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.62 E-value=5.4e-15 Score=92.21 Aligned_cols=71 Identities=44% Similarity=0.778 Sum_probs=65.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
+|||+|||..+++++|.++|.+||+|..+.+..+ +.++++|||+|.+.++|+.|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999988654 5678999999999999999999999999999998763
No 68
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.7e-15 Score=101.57 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+...|||.++...+|+++|.+.|..||+|++|.+. .+|-.+|||+|+|.+.++|++|+..|||..+.|..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 34569999999999999999999999999999994 478889999999999999999999999999999999999987
Q ss_pred CC
Q 026659 82 GG 83 (235)
Q Consensus 82 ~~ 83 (235)
..
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 43
No 69
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.60 E-value=6.7e-14 Score=110.18 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=129.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc--CCceEEEEeccCCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVELAHGGR 84 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~i~v~~~~~~~ 84 (235)
-.++|+|+-+.++-|-|.++|++||.|..|.-. ++...-.|+|+|.+.+.|..|...|+|..+ +.+.|++++++-..
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF-~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~ 229 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITF-TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTD 229 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEE-ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhccc
Confidence 357899999999999999999999999887442 333344599999999999999999999877 34677887775221
Q ss_pred C----------CCCCCCCCCC------------------------CCCC-------CCCCC-CCC-CCceEEEeCCCC-C
Q 026659 85 R----------HSSSMDRYSS------------------------YSSG-------GSRGV-SRR-SDYRVLVTGLPS-S 120 (235)
Q Consensus 85 ~----------~~~~~~~~~~------------------------~~~~-------~~~~~-~~~-~~~~l~v~nl~~-~ 120 (235)
. .-..+..+.. ..-+ +..+. ... .+..|.|.||.. .
T Consensus 230 LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 230 LNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEA 309 (492)
T ss_pred ceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhc
Confidence 1 1111110000 0000 00000 001 246788888855 5
Q ss_pred CCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 121 ~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
+|.+.|..+|.-||+|..+++..++. --|.|+|.+...|.-|+..|+|..+.| ..|++...+-
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~g----k~lrvt~SKH 372 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYG----KKLRVTLSKH 372 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecC----ceEEEeeccC
Confidence 79999999999999999999998766 479999999999999999999999999 7888876643
No 70
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=1.4e-14 Score=90.16 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=59.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 112 l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
|||+|||..+++++|.++|.+||.+..+.+..+. ..++|||+|.+.++|..|++.|||..+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 7999999999999999999999999999999862 236999999999999999999999999993
No 71
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.55 E-value=5.7e-14 Score=87.96 Aligned_cols=72 Identities=40% Similarity=0.739 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC--CCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
+|+|+|||+.+++++|.++|..||.|..+.+.... .+.++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996533 5689999999999999999999999999999998864
No 72
>smart00360 RRM RNA recognition motif.
Probab=99.54 E-value=4.4e-14 Score=87.69 Aligned_cols=68 Identities=41% Similarity=0.710 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 11 VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 11 v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
|+|||..+++++|.++|+.||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999854 46778999999999999999999999999999998863
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=7.6e-13 Score=105.25 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
....+||+||.+.+..+.|.+.|.-.|.|..|.+- ..+.++|||.|+|.++-.|..|+..|++.-+..++..+.+
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 35679999999999999999999999999988883 4578899999999999999999999998777777766665
No 74
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.6e-15 Score=106.22 Aligned_cols=82 Identities=32% Similarity=0.562 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..++||||+|..++++.-|...|-.||.|.+|.++. +++.+|||||+|...|+|.+|+..||+..+.|+.|.|.+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 568999999999999999999999999999999954 57889999999999999999999999999999999999999
Q ss_pred CCCCC
Q 026659 82 GGRRH 86 (235)
Q Consensus 82 ~~~~~ 86 (235)
+.+..
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 77654
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=5.4e-14 Score=83.45 Aligned_cols=56 Identities=36% Similarity=0.622 Sum_probs=51.1
Q ss_pred HHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 23 VEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 23 l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
|.++|++||+|..+.+..+. .++|||+|.+.++|..|+..|||..+.|+.|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997654 699999999999999999999999999999999986
No 76
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.52 E-value=1.6e-12 Score=101.42 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=134.5
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
-+.+.+.|.+|... +.-+.|..+|-.||.|+.|++..+. .|.|.|++.+....+.|+..||+..+.|.+|.|-++++
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46889999999886 7888899999999999999998765 68899999999999999999999999999999999875
Q ss_pred CCCCCCCC-------C--------CCCCCCCC--CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEEec
Q 026659 83 GRRHSSSM-------D--------RYSSYSSG--GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD 144 (235)
Q Consensus 83 ~~~~~~~~-------~--------~~~~~~~~--~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~~~~~~~ 144 (235)
.-..+... . +...+..+ ........+.+.|+.-|.|..+||+.|.++|...+. ..++++...
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 53322110 0 00111111 112234567889999999999999999999987653 444555544
Q ss_pred CCc--cEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 145 RGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 145 ~~~--~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
++. -.+.++|++.++|..||..+|...+.++..
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~g 477 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNG 477 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCC
Confidence 433 378999999999999999999999988654
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=5.7e-14 Score=114.83 Aligned_cols=79 Identities=33% Similarity=0.644 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
+.|||||||+++++++|..+|+..|.|.++++.. +|.++||||++|.++++|..|++.|||..+.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999954 6899999999999999999999999999999999999999755
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 78
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.8e-14 Score=110.45 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.|.+.|||..|++-+|+++|..+|+.||+|..|.++. +|.+..||||+|.+.++|++|+-+|++.+|+++.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4789999999999999999999999999999999954 7888999999999999999999999999999999999998
Q ss_pred cC
Q 026659 81 HG 82 (235)
Q Consensus 81 ~~ 82 (235)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 64
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=105.50 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=71.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC--CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~--~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
.....+|+|.|||....+.||..+|.+||.|.+|.|+.+. ++|||||+|++.+||++|-.+|||..+.| ++|.|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG----RkIEV 168 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG----RKIEV 168 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec----eEEEE
Confidence 4456799999999999999999999999999999999875 45899999999999999999999999999 78888
Q ss_pred eecCCC
Q 026659 184 REYDSR 189 (235)
Q Consensus 184 ~~~~~~ 189 (235)
..+..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 766443
No 80
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=2.7e-13 Score=102.78 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=68.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC-CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
.++|||+|||+.+++++|+++|+.||.|..+.+..+. .++||||+|.+.++|..|+ .|||..+.| +.|.|....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~g----r~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVD----QSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCC----ceEEEEecc
Confidence 4689999999999999999999999999999999886 4689999999999999999 599999999 778887764
Q ss_pred C
Q 026659 188 S 188 (235)
Q Consensus 188 ~ 188 (235)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 3
No 81
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2.2e-13 Score=96.39 Aligned_cols=82 Identities=21% Similarity=0.249 Sum_probs=73.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
..++|||+|||.++.+.+|+++|.+||.|..|.+...+. ..||||+|+++.+|+.||..-+|..+.| ..++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEec
Confidence 457899999999999999999999999999998876544 4699999999999999999999999999 89999999
Q ss_pred CCCCCcC
Q 026659 187 DSRRSYS 193 (235)
Q Consensus 187 ~~~~sr~ 193 (235)
+..++-+
T Consensus 81 rggr~s~ 87 (241)
T KOG0105|consen 81 RGGRSSS 87 (241)
T ss_pred cCCCccc
Confidence 8877433
No 82
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=5.9e-13 Score=98.28 Aligned_cols=81 Identities=26% Similarity=0.291 Sum_probs=74.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc----cEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
.....++|.|.||+.++++.+|+++|.+||.|..+.+.+|..+ |||||.|.+.++|.+||..|||.-+.. ..
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LI 260 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LI 260 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EE
Confidence 4456789999999999999999999999999999999999765 599999999999999999999999998 88
Q ss_pred EEEeecCCC
Q 026659 181 VRVREYDSR 189 (235)
Q Consensus 181 i~v~~~~~~ 189 (235)
++|+..+++
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 999887654
No 83
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=2.7e-13 Score=106.01 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=122.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCC----eeEEEE-e-cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYGP----IVDIDL-K-IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~----i~~i~~-~-~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.|-..+||+++|+.|+.++|..-.+ .+.|-+ . .+|+..|-|||.|..+++|+.|+. -|...++-+.|.+.-+.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRST 241 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHHh
Confidence 3556799999999999999974322 333433 3 378999999999999999999998 45566666666665443
Q ss_pred CCCCC--------CC-CC--CCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC-ceE--EEEEecC--
Q 026659 82 GGRRH--------SS-SM--DRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFRDR-- 145 (235)
Q Consensus 82 ~~~~~--------~~-~~--~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~--~~~~~~~-- 145 (235)
..+.. .. .. ..+.....+....++.....+|.+.+||+..+.++|.++|..|.. |.. +++..+.
T Consensus 242 aaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qG 321 (508)
T KOG1365|consen 242 AAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQG 321 (508)
T ss_pred HHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCC
Confidence 11100 00 00 000001112233445555778999999999999999999999874 333 5555543
Q ss_pred -CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 146 -GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 146 -~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
..|.|||+|.+.++|..|..+.|++.... ++|.|-..
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk~hk~~mk~----RYiEvfp~ 359 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQKCHKKLMKS----RYIEVFPC 359 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHHHHHhhccc----ceEEEeec
Confidence 34799999999999999999999999877 78887544
No 84
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.6e-12 Score=105.48 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=111.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-----CCCCCC---eEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-----PPRPPG---YAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~-----~~~~~g---~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (235)
=++.||||+||++++|++|...|..||.+..=+-.. --.++| |+|+.|+++.+....+..+.- ....+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 367899999999999999999999999765433211 113456 999999999999887765533 334444
Q ss_pred EEeccCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHH-hcCCceEEEEEecCC----
Q 026659 77 VELAHGGRRHSSSMDR-----YSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRG---- 146 (235)
Q Consensus 77 v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~g~v~~~~~~~~~~---- 146 (235)
+..+.+....+.-..+ ...+.-. ...+-.+..||||++||..++.++|..+|. -||.|..+.|-.|+.
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d--~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLD--HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhc--cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 4444333222210000 0111111 223345678999999999999999999999 699999999998843
Q ss_pred ccEEEEEEcCHHHHHHHHHH
Q 026659 147 GMTGIVDYTSYDDMKYAIRK 166 (235)
Q Consensus 147 ~~~~fV~f~~~~~A~~a~~~ 166 (235)
+|-|=|+|.+...-.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 46789999999999999864
No 85
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.3e-13 Score=90.57 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=70.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc----cEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
...++|||+||+..+++++|-++|.++|+|..|.+-.|..+ |||||+|.+.++|..|+.-++|+.+.. +.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----ccee
Confidence 45689999999999999999999999999999988877654 699999999999999999999999999 7888
Q ss_pred EeecCC
Q 026659 183 VREYDS 188 (235)
Q Consensus 183 v~~~~~ 188 (235)
++.+.+
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 887754
No 86
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.5e-13 Score=109.40 Aligned_cols=78 Identities=28% Similarity=0.505 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~ 85 (235)
-..|||.||+.++|++.|+++|++||.|+.|+.+ +.||||.|.+.++|.+|++.+||..|.|..|.|.+|++...
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 3579999999999999999999999999999877 67999999999999999999999999999999999997765
Q ss_pred CCC
Q 026659 86 HSS 88 (235)
Q Consensus 86 ~~~ 88 (235)
.+.
T Consensus 334 ~k~ 336 (506)
T KOG0117|consen 334 KKK 336 (506)
T ss_pred hcc
Confidence 443
No 87
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=7e-13 Score=82.50 Aligned_cols=63 Identities=25% Similarity=0.435 Sum_probs=57.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 112 l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
|+|+|||..+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|.+|+..++|..+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 78999999999999999999999999999998754 4699999999999999999999999999
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=5.8e-13 Score=89.47 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=69.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc----cEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
...+|.|||.++...+++++|.+.|..||+|+++.+..|..+ |||+|+|++.++|+.|+.++||..+-| ..+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~----q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG----QNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC----Cce
Confidence 356799999999999999999999999999999999988765 599999999999999999999999999 566
Q ss_pred EEeec
Q 026659 182 RVREY 186 (235)
Q Consensus 182 ~v~~~ 186 (235)
.|+..
T Consensus 145 ~VDw~ 149 (170)
T KOG0130|consen 145 SVDWC 149 (170)
T ss_pred eEEEE
Confidence 66543
No 89
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=1e-12 Score=106.15 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=71.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCH--HHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY--DDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~--~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
.+.+|||+||++.+++++|..+|..||.|..+.+++...+|||||+|.+. .++.+||..|||..+.| +.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEee
Confidence 45789999999999999999999999999999999888889999999988 78999999999999999 7899977
Q ss_pred cCC
Q 026659 186 YDS 188 (235)
Q Consensus 186 ~~~ 188 (235)
+++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 754
No 90
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.4e-11 Score=93.63 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=67.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.+-+||||.-|++.+++..|+..|..||.|+.+.++.+. ..|||||+|.+..+...|.+..+|.+|+| ..|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg----rri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG----RRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC----cEEE
Confidence 455799999999999999999999999999999999884 45799999999999999999999999999 4555
Q ss_pred Eeec
Q 026659 183 VREY 186 (235)
Q Consensus 183 v~~~ 186 (235)
|+..
T Consensus 175 VDvE 178 (335)
T KOG0113|consen 175 VDVE 178 (335)
T ss_pred EEec
Confidence 5443
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=3.4e-12 Score=95.35 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=67.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc-cEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~-~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
.+++|+|+||++.+++++|+++|+.||+|.++.+..+... ++|||+|.++++|..|+ .|+|..|.+ ..|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d----~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD----QRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC----ceEEEEeC
Confidence 4689999999999999999999999999999999988643 59999999999999999 799999999 56777665
Q ss_pred C
Q 026659 187 D 187 (235)
Q Consensus 187 ~ 187 (235)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 92
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=5.5e-13 Score=100.80 Aligned_cols=75 Identities=37% Similarity=0.676 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
..+++|+||||.+.|+..||+..|++||+|.+|.+. ++|+||.|.-.++|..|+..|||..|.|++|+|+++...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 478999999999999999999999999999999998 799999999999999999999999999999999998754
No 93
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=2.2e-12 Score=80.03 Aligned_cols=58 Identities=26% Similarity=0.457 Sum_probs=51.7
Q ss_pred HHHHHHHHh----hcCCeeEEE-E-e--cC--CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 026659 20 MREVEDLFY----KYGPIVDID-L-K--IP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (235)
Q Consensus 20 ~~~l~~~F~----~~G~i~~i~-~-~--~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (235)
+++|+++|+ +||.|..|. + . .+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999985 3 2 23 788999999999999999999999999999999976
No 94
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=5.8e-12 Score=78.24 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=59.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC--CccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~--~~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
+|+|.|||..+++++|.++|.+||.+..+.+..+. ..++|||+|.+.++|..|+..++|..+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 48999999999999999999999999999888765 34699999999999999999999999988
No 95
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2.7e-12 Score=105.80 Aligned_cols=169 Identities=21% Similarity=0.322 Sum_probs=130.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc-----------C-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY-----------G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~-----------G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 70 (235)
......+||+++|..++++.+..+|..- | .+..+.+. ..+.||||+|.+.+.|..|+. +++..+
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f 247 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIF 247 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhh
Confidence 3567889999999999999999999754 2 35555553 347999999999999999998 999999
Q ss_pred CCceEEEEeccCCCCCCCCCCCC---CCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-
Q 026659 71 DGYRLRVELAHGGRRHSSSMDRY---SSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG- 146 (235)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~- 146 (235)
.|..+++.--......+...... ..+...............++|++||..+++.++.++...||.+....+..+..
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 99998877544332222111110 11111122223334567899999999999999999999999999988887754
Q ss_pred ---ccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 147 ---GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 147 ---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
+||||.+|.++.....|+..|||+.+.+.
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 57999999999999999999999999994
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.7e-12 Score=80.83 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
++..+..|||.|||..+|.++.-++|.+||.|..+++-.... .|.|||.|++..+|.+|+..|+|..+.+ +++.|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEEE
Confidence 345567899999999999999999999999999999976654 4799999999999999999999999999 78777
Q ss_pred eecC
Q 026659 184 REYD 187 (235)
Q Consensus 184 ~~~~ 187 (235)
-...
T Consensus 90 lyyq 93 (124)
T KOG0114|consen 90 LYYQ 93 (124)
T ss_pred EecC
Confidence 5544
No 97
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1e-12 Score=112.76 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=132.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC--CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..+++||+|||+..+++.+|+..|..+|.|..|.|..+ +....||||.|.+-..+-.|...+.+..|....+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 35789999999999999999999999999999999543 4556799999999999999999999988766666655544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHH
Q 026659 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMK 161 (235)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~ 161 (235)
+. ......+++++|+.-+....|...|..||.|..|.+..... |++|.|++...|+
T Consensus 450 ~k----------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq 505 (975)
T KOG0112|consen 450 PK----------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQ 505 (975)
T ss_pred cc----------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccch
Confidence 31 23345799999999999999999999999999887766555 9999999999999
Q ss_pred HHHHHhcCCeecCccceeEEEEeecC
Q 026659 162 YAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 162 ~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
.|+..|.|..+++.... ++|..+.
T Consensus 506 ~a~~~~rgap~G~P~~r--~rvdla~ 529 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRR--LRVDLAS 529 (975)
T ss_pred hhHHHHhcCcCCCCCcc--ccccccc
Confidence 99999999999986543 6665543
No 98
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.34 E-value=3.8e-12 Score=107.73 Aligned_cols=77 Identities=30% Similarity=0.514 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~ 85 (235)
++|||||+|+..+++.||.++|+.||+|.+|.++. ++++|||.+....+|.+|+.+|++..+.++.|+|.|+..+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 68999999999999999999999999999999974 489999999999999999999999999999999999986544
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.33 E-value=6.3e-10 Score=87.23 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=129.8
Q ss_pred CCCCeEEEcCCCC--CCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc--CCceEEEEe
Q 026659 4 RSSRTLYVGNLPG--DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVEL 79 (235)
Q Consensus 4 ~~~~~l~v~nl~~--~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~i~v~~ 79 (235)
.++..|.+.=|.+ .+|.+.|+++-...|+|..|.+... .--.|.|||.+.+.|++|.+.|||..| +...|+|++
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 4566666665554 5899999999999999999988432 234699999999999999999999766 568999999
Q ss_pred ccCCCCCCC-----------------CC----------------CCCCCCCCC-----------CCCC------------
Q 026659 80 AHGGRRHSS-----------------SM----------------DRYSSYSSG-----------GSRG------------ 103 (235)
Q Consensus 80 ~~~~~~~~~-----------------~~----------------~~~~~~~~~-----------~~~~------------ 103 (235)
|++.+..-. .. ..+..+.++ +..+
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 985532100 00 000011100 0000
Q ss_pred ------CCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCcc
Q 026659 104 ------VSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 104 ------~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~ 176 (235)
....+++.+.|-+|... ++-+.|..+|..||.|..+++++... |.|.|++.+..+.++|+..||+..+-|
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-gtamVemgd~~aver~v~hLnn~~lfG-- 352 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-GTAMVEMGDAYAVERAVTHLNNIPLFG-- 352 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-ceeEEEcCcHHHHHHHHHHhccCcccc--
Confidence 11235678999999876 46788999999999999999987654 479999999999999999999999988
Q ss_pred ceeEEEEeecC
Q 026659 177 SRSYVRVREYD 187 (235)
Q Consensus 177 ~~~~i~v~~~~ 187 (235)
.+|.+...+
T Consensus 353 --~kl~v~~Sk 361 (494)
T KOG1456|consen 353 --GKLNVCVSK 361 (494)
T ss_pred --ceEEEeecc
Confidence 566665543
No 100
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.9e-12 Score=93.90 Aligned_cols=83 Identities=22% Similarity=0.428 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
+.+.|+|||..||.+.++.||.+.|-.||.|.+.++.. |..++-|+||.|.++.+|+.||..|||..|+=++|+|.+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 45789999999999999999999999999999988843 678899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 026659 80 AHGGRR 85 (235)
Q Consensus 80 ~~~~~~ 85 (235)
..++..
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 876554
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=4e-11 Score=74.13 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=56.4
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 114 v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
|.|||..+++++|.++|..||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 568999999999999999999999999988754 5799999999999999999999999988
No 102
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=1.7e-11 Score=86.78 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
+...+.+|||+||+..++++.|.++|-+.|+|+.+++.+|. ..||||++|.++++|+.|++-||.-++.| +.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg----rp 80 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG----RP 80 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC----ce
Confidence 34566799999999999999999999999999999999874 45799999999999999999999999999 78
Q ss_pred EEEeecC
Q 026659 181 VRVREYD 187 (235)
Q Consensus 181 i~v~~~~ 187 (235)
|+|....
T Consensus 81 Irv~kas 87 (203)
T KOG0131|consen 81 IRVNKAS 87 (203)
T ss_pred eEEEecc
Confidence 8887665
No 103
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=1.5e-10 Score=72.20 Aligned_cols=64 Identities=22% Similarity=0.404 Sum_probs=59.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
+|+|.|||..+++++|.++|..+|.+..+.+..+.. .++|||+|.+.++|..|+..+++..+.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 479999999999999999999999999999998764 5799999999999999999999999988
No 104
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.7e-12 Score=93.32 Aligned_cols=138 Identities=18% Similarity=0.256 Sum_probs=109.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
..++|||+||...++++-|.++|-+.|+|..+.|.. ++..+ ||||.|.++.+..-|+..|||..+.+..|++.+-..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 578999999999999999999999999999999954 44555 999999999999999999999999999999988654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHH
Q 026659 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDD 159 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~ 159 (235)
....+ |...++++.+.+.|...|.+..+++..+.. ..++|+.+...-.
T Consensus 87 ~shap-----------------------------ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 87 NSHAP-----------------------------LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCA 137 (267)
T ss_pred CCcch-----------------------------hhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhc
Confidence 32211 344567777778888888888877776543 3478888777666
Q ss_pred HHHHHHHhcCCee
Q 026659 160 MKYAIRKLDRSEF 172 (235)
Q Consensus 160 A~~a~~~l~g~~~ 172 (235)
.-.++....+..+
T Consensus 138 ~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 138 VPFALDLYQGLEL 150 (267)
T ss_pred CcHHhhhhcccCc
Confidence 6666666555443
No 105
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.23 E-value=4.1e-11 Score=86.63 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEE---ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~i~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
....+||..+|.-+-+.++..+|.+| |.+..+.+ ..||.++|||||+|.+++.|.-|-+.||+++|.|+.|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45668999999999999999999998 68888888 458999999999999999999999999999999999999997
Q ss_pred cCC
Q 026659 81 HGG 83 (235)
Q Consensus 81 ~~~ 83 (235)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 755
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=9.7e-11 Score=69.33 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=48.1
Q ss_pred HHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 126 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 126 l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
|.++|++||+|..+.+..+. +++|||+|.+.++|..|+..|||..+.| ..|+|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g----~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG----RPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT----EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 67899999999999997766 5799999999999999999999999999 6777654
No 107
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=4e-12 Score=89.86 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=68.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc----cEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
...|||+|||+..|+.||...|++||+|+.|.+++|..+ ||||+.|+++.+..-|+..|||..+.| +.|+|+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g----RtirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG----RTIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc----eeEEee
Confidence 457999999999999999999999999999999999765 599999999999999999999999999 788885
Q ss_pred ec
Q 026659 185 EY 186 (235)
Q Consensus 185 ~~ 186 (235)
-.
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 43
No 108
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=90.05 Aligned_cols=76 Identities=30% Similarity=0.573 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhc-CCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~~i~v~~~~~ 82 (235)
....+|||++|...+++.+|++.|-+||+|..|.+... ++.|||+|.+.++|+.|.... |...+.|.+|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34689999999999999999999999999999988642 679999999999999977544 55677999999999987
No 109
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=8.1e-12 Score=99.09 Aligned_cols=142 Identities=25% Similarity=0.386 Sum_probs=117.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC-CccCCceEEEEeccCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELAHGG 83 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~i~v~~~~~~ 83 (235)
..+||+||.+.+++++|..+|...- --..+.+. .|||||.+.+..+|.+|++.++| ..+.|.++.|.++.++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 5799999999999999999997542 22223233 69999999999999999999999 5779999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEE-ecCCccEEEEEEcCHHHHHH
Q 026659 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RDRGGMTGIVDYTSYDDMKY 162 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~-~~~~~~~~fV~f~~~~~A~~ 162 (235)
+... +.+.|.|+|+...++.|..+...||.+..|... .+...-..-|+|...+.+..
T Consensus 77 kqrs----------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 77 KQRS----------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HHHh----------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 5433 358899999999999999999999999998654 34433345589999999999
Q ss_pred HHHHhcCCeecCc
Q 026659 163 AIRKLDRSEFRNA 175 (235)
Q Consensus 163 a~~~l~g~~~~g~ 175 (235)
|+.+++|..+...
T Consensus 135 ai~kl~g~Q~en~ 147 (584)
T KOG2193|consen 135 AIHKLNGPQLENQ 147 (584)
T ss_pred HHHhhcchHhhhh
Confidence 9999999999874
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4e-11 Score=87.36 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=72.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
..++|||++|...+++.-|...|-.||+|..+.++.|. .++||||+|...++|..||..||+.++.| +.|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEEE
Confidence 34689999999999999999999999999999999774 45799999999999999999999999999 89999
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..+++.+
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 8887765
No 111
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=5.9e-11 Score=97.39 Aligned_cols=165 Identities=19% Similarity=0.171 Sum_probs=102.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
-+..+|+|-|||..++.++|+.+|+.||+|..|.. +....+.+||+|.|..+|+.|++.|++..+.|+.|........
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 36789999999999999999999999999999655 3445899999999999999999999999999999982111100
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCC-CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHH
Q 026659 84 RRHSSSMDR-YSSYSSGGSRGVSRR-SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMK 161 (235)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~ 161 (235)
......... ...+..+....++.. ..-.++.- |++..+..-++..+.-+|.+.. .-.. .-...-|++|.+..++.
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~-~~~hq~~~~~~~~~s~a 227 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETP-LLNHQRFVEFADNRSYA 227 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cccc-chhhhhhhhhccccchh
Confidence 000000000 000000100111111 11123332 7777777666666666776654 1111 11115678888888885
Q ss_pred HHHHHhcCCeecC
Q 026659 162 YAIRKLDRSEFRN 174 (235)
Q Consensus 162 ~a~~~l~g~~~~g 174 (235)
.++..+ |..+.+
T Consensus 228 ~~~~~~-G~~~s~ 239 (549)
T KOG4660|consen 228 FSEPRG-GFLISN 239 (549)
T ss_pred hcccCC-ceecCC
Confidence 555433 444444
No 112
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.11 E-value=3.6e-10 Score=93.10 Aligned_cols=84 Identities=25% Similarity=0.425 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.++|||.+|...+...+|+.||++||+|+-.+|+.+ ...+-|+||++.+.++|.++|..|+.+.|.|+.|.|+-+++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 578999999999999999999999999999998653 44567999999999999999999999999999999999987
Q ss_pred CCCCCCC
Q 026659 83 GRRHSSS 89 (235)
Q Consensus 83 ~~~~~~~ 89 (235)
....+..
T Consensus 485 Ep~Gkk~ 491 (940)
T KOG4661|consen 485 EPGGKKN 491 (940)
T ss_pred Ccccccc
Confidence 6655443
No 113
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.3e-10 Score=84.35 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=55.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
++|||+||++.+..+.|+++|++||+|+.+.++.|.. +|||||+|.+.+.|.+|++- -+-.|+|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdG 80 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDG 80 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccc
Confidence 5799999999999999999999999999999998865 46999999999999999853 2334455
No 114
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.07 E-value=9e-10 Score=83.44 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
...|+|.|||+.++++||+++|..||+++.+.+++ .|.+.|.|-|.|...++|..|++.|||..++|+.|.+......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 47799999999999999999999999888888855 5788999999999999999999999999999999999987654
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 163 ~~ 164 (243)
T KOG0533|consen 163 SQ 164 (243)
T ss_pred cc
Confidence 43
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.4e-10 Score=87.01 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=71.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCcc----EEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~----~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
..++.+.|||.-|.+.++.++|.-+|+.||.|..|.+++|..+| ||||+|++.++.++|.-+|++..+.+ +.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD----rR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD----RR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc----ce
Confidence 45678899999999999999999999999999999999998776 99999999999999999999999999 67
Q ss_pred EEEeec
Q 026659 181 VRVREY 186 (235)
Q Consensus 181 i~v~~~ 186 (235)
|.|+..
T Consensus 311 IHVDFS 316 (479)
T KOG0415|consen 311 IHVDFS 316 (479)
T ss_pred EEeehh
Confidence 777543
No 116
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.06 E-value=1.3e-09 Score=85.97 Aligned_cols=75 Identities=24% Similarity=0.393 Sum_probs=68.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
..+|||+|||..+++++|.++|.+||.+..+.+..+. ..|+|||+|.+.++|..|+..++|..+.| +.+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC----ceeEee
Confidence 6899999999999999999999999999999998874 34799999999999999999999999999 677777
Q ss_pred ecC
Q 026659 185 EYD 187 (235)
Q Consensus 185 ~~~ 187 (235)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 754
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=1.5e-09 Score=67.28 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=44.8
Q ss_pred HHHHHHHHH----hcCCceEEE-EEecC------CccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 123 WQDLKDHMR----RAGDVCFSQ-VFRDR------GGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 123 ~~~l~~~f~----~~g~v~~~~-~~~~~------~~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
+++|.++|. +||.|..+. +..+. ..|+|||+|.+.++|.+|+..|||..+.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 567888888 999999985 55433 35799999999999999999999999999
No 118
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.04 E-value=1.2e-08 Score=83.00 Aligned_cols=167 Identities=21% Similarity=0.230 Sum_probs=111.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.-.|-+.+||+.||++||.+||+-.-.|.. |.+.. .+.+.|-|||+|++.+.|+.|+. -|...+.-+-|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 4567889999999999999999998765555 43432 46788999999999999999998 67777888888888764
Q ss_pred CCCC-------------CCCCC----CCC---------------------------------------CCCCCC--CCCC
Q 026659 82 GGRR-------------HSSSM----DRY---------------------------------------SSYSSG--GSRG 103 (235)
Q Consensus 82 ~~~~-------------~~~~~----~~~---------------------------------------~~~~~~--~~~~ 103 (235)
.... ..+.. .+. ..+... ...+
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 1100 00000 000 000000 0000
Q ss_pred C---------------CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEec---CCccEEEEEEcCHHHHHHHHH
Q 026659 104 V---------------SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RGGMTGIVDYTSYDDMKYAIR 165 (235)
Q Consensus 104 ~---------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~---~~~~~~fV~f~~~~~A~~a~~ 165 (235)
. ....+..++..+||+..++.++..+|...-.+ .+.+.-. ..+|.|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0 00122568889999999999999999965443 4444433 335789999999999999984
Q ss_pred HhcCCeecC
Q 026659 166 KLDRSEFRN 174 (235)
Q Consensus 166 ~l~g~~~~g 174 (235)
-++..+..
T Consensus 340 -kd~anm~h 347 (510)
T KOG4211|consen 340 -KDGANMGH 347 (510)
T ss_pred -cCCcccCc
Confidence 34444444
No 119
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.04 E-value=6.8e-10 Score=91.22 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=71.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc----cEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
..+||+|+|+.+++++|.++|...|.|..++++.|..+ ||||++|.+.++|..|+..|||.++.| +.++|..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 78999999999999999999999999999999988654 699999999999999999999999999 7888887
Q ss_pred cCCCCCc
Q 026659 186 YDSRRSY 192 (235)
Q Consensus 186 ~~~~~sr 192 (235)
...+..+
T Consensus 95 ~~~~~~~ 101 (435)
T KOG0108|consen 95 ASNRKNA 101 (435)
T ss_pred ccccchh
Confidence 7655543
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=2.4e-11 Score=104.05 Aligned_cols=135 Identities=24% Similarity=0.320 Sum_probs=112.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
++.+++||.||++.+.+.+|...|..+|.+..+.+ ...+..+|+||++|..++.+.+|+...++ .+.|+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-~~~gK------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-CFFGK------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh-hhhhh-------
Confidence 34578999999999999999999999997777666 34678899999999999999999994444 44441
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CccEEEEEEcCH
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSY 157 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV~f~~~ 157 (235)
..++|.|.|...|.+++..++.++|.+....++... ..|.|+|.|.+.
T Consensus 737 -----------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~e 787 (881)
T KOG0128|consen 737 -----------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTE 787 (881)
T ss_pred -----------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCc
Confidence 157899999999999999999999999998766543 457999999999
Q ss_pred HHHHHHHHHhcCCeecCc
Q 026659 158 DDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 158 ~~A~~a~~~l~g~~~~g~ 175 (235)
.+|.+++...+...+.-.
T Consensus 788 a~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 788 ADASRKVASVDVAGKREN 805 (881)
T ss_pred chhhhhcccchhhhhhhc
Confidence 999999888777776553
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.93 E-value=2.1e-09 Score=84.40 Aligned_cols=176 Identities=19% Similarity=0.223 Sum_probs=130.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---ecCCCCCCeEEEEecCHHHHHHHHHhcCC-CccCCceEEEEec
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELA 80 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~i~v~~~ 80 (235)
..+++|++++...+.+.++..++..+|.+....+ .....+++++++.|+..+.+..|+. +.+ ....++.+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 4678999999999999999999999997776655 2345779999999999999999999 555 4666666655554
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE-EeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc----cEEEEEEc
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYT 155 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~ 155 (235)
........ ............+++ |.+++..+++++|..+|..+|.|..+.+...... ++|+|.|.
T Consensus 166 ~~~~~~~~----------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~ 235 (285)
T KOG4210|consen 166 TRRGLRPK----------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFS 235 (285)
T ss_pred cccccccc----------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhh
Confidence 43221110 000011112233445 9999999999999999999999999999877654 58999999
Q ss_pred CHHHHHHHHHHhcCCeecCccceeEEEEeecCCCCCcCCCC
Q 026659 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRRSYSRSP 196 (235)
Q Consensus 156 ~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~sr~rs~ 196 (235)
....+..++.. +...+.+ ..+.+.....++..+.++
T Consensus 236 ~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~ 271 (285)
T KOG4210|consen 236 AGNSKKLALND-QTRSIGG----RPLRLEEDEPRPKSDGGL 271 (285)
T ss_pred hchhHHHHhhc-ccCcccC----cccccccCCCCccccccc
Confidence 99999999876 7777777 677777776666544433
No 122
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.92 E-value=2e-09 Score=81.80 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+...+||+|+...+|.+++...|+.||.|..+.+.. .++++|||||+|.+.+.+..|+. |||..+.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4678999999999999999999999999998777743 46789999999999999999999 9999999999999997
Q ss_pred cCC
Q 026659 81 HGG 83 (235)
Q Consensus 81 ~~~ 83 (235)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 754
No 123
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.92 E-value=2.7e-09 Score=89.98 Aligned_cols=78 Identities=24% Similarity=0.462 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC------CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
..++|||+||++.++++.|...|..||+|..+++++. .....++||-|.+..+|++|++.|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4688999999999999999999999999999999653 3456799999999999999999999999999999999
Q ss_pred eccC
Q 026659 79 LAHG 82 (235)
Q Consensus 79 ~~~~ 82 (235)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9853
No 124
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.87 E-value=1.9e-08 Score=62.40 Aligned_cols=71 Identities=27% Similarity=0.420 Sum_probs=50.1
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHhhcC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 7 RTLYVGNLPGDTRMRE----VEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~----l~~~F~~~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..|||.|||.+.+... |.+++..|| .|..|. .+.|.|.|.+++.|..|.+.|+|-.+.|..|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999988877 566777886 787762 4789999999999999999999999999999999986
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
..+
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 444
No 125
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.87 E-value=6.8e-09 Score=84.90 Aligned_cols=77 Identities=29% Similarity=0.536 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--c-CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--I-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~--~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
...+|||.|||.++++++|+++|..||+|+...|. . .+....||||+|.+.+.++.|+. -+-..++++.|.|+--.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 34569999999999999999999999999987772 2 24444999999999999999998 55788899999999866
Q ss_pred C
Q 026659 82 G 82 (235)
Q Consensus 82 ~ 82 (235)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 4
No 126
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.86 E-value=5.6e-09 Score=82.32 Aligned_cols=83 Identities=24% Similarity=0.522 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
...|||++||.++++++|++.|.+||.|..+.++. +..+++|+||.|.+++.+++++. ..-+.|.|+.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 45899999999999999999999999888887754 46789999999999999999988 778899999999999998
Q ss_pred CCCCCCC
Q 026659 83 GRRHSSS 89 (235)
Q Consensus 83 ~~~~~~~ 89 (235)
+......
T Consensus 176 k~~~~~~ 182 (311)
T KOG4205|consen 176 KEVMQST 182 (311)
T ss_pred hhhcccc
Confidence 7765543
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.81 E-value=4.9e-08 Score=63.56 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=62.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccC----CceEEE
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRV 77 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~i~v 77 (235)
+||.|.|||...|.++|.+++... |...-+.++. ++...|||||-|.+++.|......++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999999864 5555566643 5678999999999999999999999998885 455677
Q ss_pred Eecc
Q 026659 78 ELAH 81 (235)
Q Consensus 78 ~~~~ 81 (235)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7765
No 128
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.74 E-value=4.2e-08 Score=83.82 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=68.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
..+||||++|+..++++||..+|+.||+|.+|.++... ++|||.+....+|.+|+.+|++..+.+ ..|++.++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~----k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVAD----KTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccc----eeeEEeeec
Confidence 34689999999999999999999999999998887554 599999999999999999999999998 677777766
Q ss_pred CCC
Q 026659 188 SRR 190 (235)
Q Consensus 188 ~~~ 190 (235)
+..
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 554
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=4.4e-08 Score=81.11 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=67.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
.+..|+|.+|...+...+|..+|++||.|+-++++.+.. ..|+||+|.+.++|.++|..||.+.|.| +-|.|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISV 479 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISV 479 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeee
Confidence 346799999999999999999999999999999997743 2499999999999999999999999999 67878
Q ss_pred eecCC
Q 026659 184 REYDS 188 (235)
Q Consensus 184 ~~~~~ 188 (235)
+....
T Consensus 480 EkaKN 484 (940)
T KOG4661|consen 480 EKAKN 484 (940)
T ss_pred eeccc
Confidence 66554
No 130
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.70 E-value=9.9e-08 Score=70.40 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=65.5
Q ss_pred ceEEEeCCCCCCCHHHHHH----HHHhcCCceEEEEEec-CCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 110 YRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~----~f~~~g~v~~~~~~~~-~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
.+|||.||+..+..++|.. +|++||.|..|..... +-.|.|||.|.+.+.|..|+.+|+|..+-| .++++.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg----K~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG----KPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC----chhhee
Confidence 3999999999999998888 9999999999877744 446799999999999999999999999999 566666
Q ss_pred ecCCC
Q 026659 185 EYDSR 189 (235)
Q Consensus 185 ~~~~~ 189 (235)
.++..
T Consensus 86 yA~s~ 90 (221)
T KOG4206|consen 86 YAKSD 90 (221)
T ss_pred cccCc
Confidence 65543
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.69 E-value=1.2e-07 Score=80.28 Aligned_cols=174 Identities=11% Similarity=-0.009 Sum_probs=119.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.+.+-+.+++.+....|++++|... .|....|.. .+...|.++|+|....++.+|+. -|...+-.+.+++..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 45666677999999999999999643 233333322 23337899999999999999998 67788888999888765
Q ss_pred CCCCC--CCC------CCCCCCCC-----------CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceE-EEE
Q 026659 82 GGRRH--SSS------MDRYSSYS-----------SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 141 (235)
Q Consensus 82 ~~~~~--~~~------~~~~~~~~-----------~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~ 141 (235)
...-. ... ........ .+.....+...+..|||..||..+++.++.++|.....|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 32110 000 00000000 01111234456779999999999999999999998888777 555
Q ss_pred EecC---CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 142 FRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 142 ~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
...+ -++.|||.|.+++++.+|...-+...++. +.|+|.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~----r~irv~ 509 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH----RIIRVD 509 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc----eEEEee
Confidence 4433 34589999999999999986555555554 677774
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.68 E-value=9.8e-08 Score=72.51 Aligned_cols=67 Identities=27% Similarity=0.319 Sum_probs=62.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc---cEEEEEEcCHHHHHHHHHHhcCCeecCcc
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fV~f~~~~~A~~a~~~l~g~~~~g~~ 176 (235)
.+|+|.|||+.++.+||+++|..||.++.+.+..++.+ |.|-|.|...++|..|++++||..++|..
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCce
Confidence 67999999999999999999999999999999988776 79999999999999999999999999953
No 133
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.68 E-value=4.2e-08 Score=73.37 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=108.7
Q ss_pred EEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 9 LYVGNLPGDTRMRE-V--EDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 9 l~v~nl~~~~t~~~-l--~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+++++-..+.++- | ...|+.+-.....++.. .+.-.+++|+.|.....-.++...-++..++-..+.+--...-
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45556555554444 2 56676665444444432 3455789999999888888877766666666555332221111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHH
Q 026659 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDD 159 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~ 159 (235)
. ......-...+.+||-+.|...++.+.|...|.+|......+++++.. .||+||.|.+..+
T Consensus 179 e--------------dPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 179 E--------------DPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred C--------------CcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHH
Confidence 1 011122235667899999999999999999999999999999988854 4699999999999
Q ss_pred HHHHHHHhcCCeecC
Q 026659 160 MKYAIRKLDRSEFRN 174 (235)
Q Consensus 160 A~~a~~~l~g~~~~g 174 (235)
+..|+.+|+|..++.
T Consensus 245 ~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 245 YVRAMREMNGKYVGS 259 (290)
T ss_pred HHHHHHhhccccccc
Confidence 999999999999998
No 134
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.65 E-value=7.7e-07 Score=70.51 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=107.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee---EEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV---DIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~---~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
+++..|-..+|||..++.+|-.+|.-..... -+-+...+..-|.|.|.|.+++.-+.|++ -+...+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 3556677889999999999999997542111 12223345556889999999999999998 6777888999998877
Q ss_pred cCCCCCCCCCCCCCCCCC-CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhc----CCceEEEEEe---cCCccEEEE
Q 026659 81 HGGRRHSSSMDRYSSYSS-GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA----GDVCFSQVFR---DRGGMTGIV 152 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----g~v~~~~~~~---~~~~~~~fV 152 (235)
....-..- ..... ....-.++...-.|.+.+||+++++.++.++|... |..+.+-++. ...+|-|||
T Consensus 137 ~ge~f~~i-----agg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 137 TGEEFLKI-----AGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred CchhheEe-----cCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 64432111 00000 01111222334568889999999999999999732 2333343333 344689999
Q ss_pred EEcCHHHHHHHHHH
Q 026659 153 DYTSYDDMKYAIRK 166 (235)
Q Consensus 153 ~f~~~~~A~~a~~~ 166 (235)
.|..+++|..|+.+
T Consensus 212 lfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 212 LFACEEDAQFALRK 225 (508)
T ss_pred EecCHHHHHHHHHH
Confidence 99999999999853
No 135
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.61 E-value=1.7e-08 Score=75.60 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=52.1
Q ss_pred HHHHHHHh-hcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 21 REVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 21 ~~l~~~F~-~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
++|...|+ +||+|+++.+-. ..+-.|.+||.|..+++|++|+..|||.++.|++|.+++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 999999998732 345689999999999999999999999999999999998764
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.58 E-value=8.2e-08 Score=71.86 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=66.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
+...||.|.|..+++++.|-..|.+|-.....++ ..+++++||+||.|.+++++..|+..|||..++.+.|.+.-+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 5678999999999999999999999865544444 568999999999999999999999999999999999876543
No 137
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=4.1e-07 Score=71.10 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=63.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHh-cCCeecCccceeEEEEee
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l-~g~~~~g~~~~~~i~v~~ 185 (235)
..-.+|||++|...+++++|.++|.+||+|..+.+..... +|||+|.+.+.|+.|..++ |...++| ..+.+..
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEEEEe
Confidence 3446899999999999999999999999999998886554 9999999999999887664 5555677 6777776
Q ss_pred cCC
Q 026659 186 YDS 188 (235)
Q Consensus 186 ~~~ 188 (235)
.++
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 555
No 138
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=3.8e-07 Score=67.86 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=62.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
.+||++||+.+.+.+|+.+|..||.+..+.+... |+||+|++..+|..|+..||+..|.|. .+.++..+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e----~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGE----RLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceecce----eeeeecccc
Confidence 6899999999999999999999999998877655 899999999999999999999999994 366666553
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.47 E-value=2.5e-06 Score=70.09 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=62.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEec----CCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~----~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
...|||.|||.+++..+|.++|..||.|+...|..- ....||||+|.+.+++..||.+- -..+++ +++.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEEE
Confidence 345999999999999999999999999999776642 22369999999999999999754 555666 788888
Q ss_pred ecCCCC
Q 026659 185 EYDSRR 190 (235)
Q Consensus 185 ~~~~~~ 190 (235)
+.+...
T Consensus 363 ek~~~~ 368 (419)
T KOG0116|consen 363 EKRPGF 368 (419)
T ss_pred eccccc
Confidence 776543
No 140
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=7.8e-08 Score=70.42 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=66.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC--CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~--~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
+....+.+|||.|+...++++-|.++|-+.|.|..+.|..+. +..||||.|.++....-|++.+||..+.+..+..++
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 344567899999999999999999999999999999988654 334999999999999999999999999885554443
No 141
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.42 E-value=2.5e-06 Score=62.93 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc-----cEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~-----~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.-++|||.+||.++...+|-.+|..|...+.+.+...... -+||++|.+..+|..|+..|||..++-. ....++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE-~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE-TGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc-cCceeE
Confidence 3579999999999999999999999987777666543322 4999999999999999999999998743 335677
Q ss_pred EeecCCCC
Q 026659 183 VREYDSRR 190 (235)
Q Consensus 183 v~~~~~~~ 190 (235)
++.++...
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 76665443
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=3.3e-07 Score=75.83 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=60.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCcc
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~ 176 (235)
....+|+|.|||..++.++|..+|..||+|..+.... ...+.+||+|.+..+|++|+++|++..+.|+.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 3556899999999999999999999999999854433 33468999999999999999999999999953
No 143
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.37 E-value=2.2e-06 Score=62.43 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=61.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhc-CCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccce
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~ 178 (235)
.......+++..+|..+.+.++..+|.++ |.|..+.+.++. ++|||||+|++.+.|.=|-+.||+..+.++.+.
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 33445578999999999999999999998 566666665654 456999999999999999999999999996553
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.37 E-value=1.8e-06 Score=73.41 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=69.9
Q ss_pred CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-------ccEEEEEEcCHHHHHHHHHHhcCCee
Q 026659 100 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEF 172 (235)
Q Consensus 100 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-------~~~~fV~f~~~~~A~~a~~~l~g~~~ 172 (235)
+.+....+..+.|||+||++.++++.|...|..||+|..++++.... ..+|||-|-+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 33444456678899999999999999999999999999999997643 24999999999999999999999999
Q ss_pred cCccceeEEEEeec
Q 026659 173 RNAFSRSYVRVREY 186 (235)
Q Consensus 173 ~g~~~~~~i~v~~~ 186 (235)
.+ ..+++...
T Consensus 245 ~~----~e~K~gWg 254 (877)
T KOG0151|consen 245 ME----YEMKLGWG 254 (877)
T ss_pred ee----eeeeeccc
Confidence 87 55555444
No 145
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.36 E-value=1.2e-06 Score=58.46 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=40.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCC
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~ 170 (235)
+.|+|.+++..++.++|.++|..||.|.+|.+..... .|+|.|.+++.|+.|+.++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999988877555 8999999999999999887655
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.33 E-value=9.5e-06 Score=52.93 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=55.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhc--CCceEEEEEec----CCccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRD----RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~--g~v~~~~~~~~----~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
++|.|.|+|...+.++|.+++... |..-.+.++.| .+.|||||.|.+++.|.+-.+.++|.....-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 589999999999999999988753 45555555555 3458999999999999999999999998754
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.33 E-value=1.9e-06 Score=57.54 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=43.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCC-----ccCCceEEEEe
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY-----NFDGYRLRVEL 79 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-----~~~g~~i~v~~ 79 (235)
+.|.|.+++..++-++|+++|+.||.|..|.+... -..|||-|.+++.|+.|+..+.-. .+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999988642 457999999999999999866443 44555544443
No 148
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.29 E-value=9.8e-06 Score=63.55 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=65.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEEecCCc---cEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------~~~~~~~~~---~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
..-+..|||.|||.++|-+++.++|.++|.|.. |++..+..+ |-|.+.|...++..-|+..|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 445567999999999999999999999996643 566665443 689999999999999999999999999
Q ss_pred ccceeEEEEeecC
Q 026659 175 AFSRSYVRVREYD 187 (235)
Q Consensus 175 ~~~~~~i~v~~~~ 187 (235)
..|+|..++
T Consensus 211 ----~~~rVerAk 219 (382)
T KOG1548|consen 211 ----KKLRVERAK 219 (382)
T ss_pred ----cEEEEehhh
Confidence 788887664
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.20 E-value=1.8e-06 Score=67.93 Aligned_cols=79 Identities=29% Similarity=0.409 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEE---ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------i~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (235)
..-+|||-+||..+++++|.++|.++|.|.- |++ +.|+.+++-|.|.|.++..|+.|+.-+++..|.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4678999999999999999999999998753 333 34788999999999999999999999999999999
Q ss_pred eEEEEeccCC
Q 026659 74 RLRVELAHGG 83 (235)
Q Consensus 74 ~i~v~~~~~~ 83 (235)
.|+|.+|...
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9999988644
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.18 E-value=6.6e-06 Score=47.57 Aligned_cols=53 Identities=32% Similarity=0.564 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHH
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (235)
++.|-|.+.+++.. +++...|..||+|..+.+. ......||.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 35688899998766 4556688899999998886 23688999999999999985
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.14 E-value=8.8e-06 Score=63.62 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=61.9
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEEec-C-----CCCCCeEEEEecCHHHHHHHHHhcCCCccCCc
Q 026659 6 SRTLYVGNLPGDTRMREV------EDLFYKYGPIVDIDLKI-P-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l------~~~F~~~G~i~~i~~~~-~-----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (235)
..-+||-+||+.+..+++ .++|.+||.|..|.+.. + ..+..-.||+|.+.++|..|+...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 345899999999877772 57999999999998843 2 11112249999999999999999999999999
Q ss_pred eEEEEecc
Q 026659 74 RLRVELAH 81 (235)
Q Consensus 74 ~i~v~~~~ 81 (235)
.|++.+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99999875
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.10 E-value=4e-05 Score=47.82 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=45.2
Q ss_pred ceEEEeCCCCCCCHHH----HHHHHHhcC-CceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 110 YRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
..|+|.|||.+..... |.+++.-+| .|..+ .++.|+|.|.+++.|.+|.+.|+|..+-| .+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 3689999999988655 556666776 45444 13589999999999999999999999999 677776
Q ss_pred ecC
Q 026659 185 EYD 187 (235)
Q Consensus 185 ~~~ 187 (235)
...
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 653
No 153
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.06 E-value=2.6e-05 Score=66.60 Aligned_cols=76 Identities=21% Similarity=0.366 Sum_probs=65.4
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHHhhcCCee-EEEE--ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 4 RSSR-TLYVGNLPGDTRMREVEDLFYKYGPIV-DIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 4 ~~~~-~l~v~nl~~~~t~~~l~~~F~~~G~i~-~i~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
++.+ .|-+.|+|.+++-+||.+||..|-.+- +|.+ ..+|...|-|.|-|++.++|..|...|++..|..+.+.+.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4555 788999999999999999999997543 3444 45788999999999999999999999999999999988764
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.05 E-value=7.1e-06 Score=64.67 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=70.8
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 3 SRSSRTLY-VGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 3 ~~~~~~l~-v~nl~~~~t~~~l~~~F~~~G~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
..+..++| |++|+..+++++|+..|..+|.|..+.+. .++..+|||||.|.+...+..++.. +...+.++.+.++
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34556666 99999999999999999999999999994 3678899999999999999999986 8889999999999
Q ss_pred eccCCC
Q 026659 79 LAHGGR 84 (235)
Q Consensus 79 ~~~~~~ 84 (235)
...+..
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 877543
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.04 E-value=2.9e-05 Score=51.05 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=54.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-e---------cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL-K---------IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~-~---------~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (235)
..+.|.|-+.|+. ..+.|.+.|++||.|.+..- . ..........|.|.++.+|.+||. .||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4677889999988 67789999999999988751 0 112336789999999999999999 9999998854
Q ss_pred -EEEEecc
Q 026659 75 -LRVELAH 81 (235)
Q Consensus 75 -i~v~~~~ 81 (235)
+-|.++.
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4577764
No 156
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=2.3e-05 Score=65.27 Aligned_cols=76 Identities=26% Similarity=0.422 Sum_probs=60.0
Q ss_pred CCeEEEcCCCCCCCH------HHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccC-CceEE
Q 026659 6 SRTLYVGNLPGDTRM------REVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLR 76 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~------~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~ 76 (235)
...|+|.|+|.--.. .-|..+|+++|+|.++.++. .|..+||.|++|++..+|+.|++.|||..|+ ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 467899999864221 22567899999999999964 4678999999999999999999999998874 55566
Q ss_pred EEecc
Q 026659 77 VELAH 81 (235)
Q Consensus 77 v~~~~ 81 (235)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 65443
No 157
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.94 E-value=7.7e-06 Score=64.22 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=64.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
...+|||||-|++|++||.+.....| .+.++++. .+|.++|||+|...+....++.++.|....+.|..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 45799999999999999999998887 56666663 36899999999999999999999999999998877666654
Q ss_pred c
Q 026659 81 H 81 (235)
Q Consensus 81 ~ 81 (235)
+
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 158
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.94 E-value=7e-06 Score=61.78 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=58.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-----------CCCCC----eEEEEecCHHHHHHHHHhcCCCcc
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-----------PRPPG----YAFLEFEDYRDAEDAIRGRDGYNF 70 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~-----------~~~~g----~afV~f~~~~~a~~a~~~l~g~~~ 70 (235)
.-.||+++||+.+...-|+++|++||+|-.|.|... +...+ -+.|+|.+...|+.....|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999999432 12222 268999999999999999999999
Q ss_pred CCce
Q 026659 71 DGYR 74 (235)
Q Consensus 71 ~g~~ 74 (235)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8865
No 159
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.91 E-value=3.7e-05 Score=58.68 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=61.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
.+...+||+|+...++.++++.+|+.||.+..+.+..+.. ++|+||+|.+.+.++.|+. |+|..+.|+..
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 3445899999999999999999999999998888877654 4699999999999999997 99999999544
No 160
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.91 E-value=2e-05 Score=69.03 Aligned_cols=81 Identities=28% Similarity=0.411 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEec
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELA 80 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~ 80 (235)
+.+++.+|+++|++++....|...|..||.|..|.+-. ...||||.|.+...|+.|++.|-|..|+| +.|.|.++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 34788999999999999999999999999999998853 37899999999999999999999999975 77999998
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
......
T Consensus 529 ~~~~~~ 534 (975)
T KOG0112|consen 529 SPPGAT 534 (975)
T ss_pred cCCCCC
Confidence 755443
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.85 E-value=6.1e-05 Score=43.54 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=41.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHH
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 164 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~ 164 (235)
..|-|.|.+.... +++..+|..||+|..+.+....+ ..+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence 4678888886655 45556888999999988773333 8999999999999985
No 162
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.78 E-value=2.5e-05 Score=65.52 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc---CCceEEEEe
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLRVEL 79 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~i~v~~ 79 (235)
..++.|+|.||-.-.|.-+|+.++. .+|.|.+.||-. -+..|||.|.+.++|.+...+|||..| +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 4678999999999999999999999 567888887721 167799999999999999999999887 578899998
Q ss_pred cc
Q 026659 80 AH 81 (235)
Q Consensus 80 ~~ 81 (235)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 85
No 163
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.74 E-value=0.00024 Score=49.61 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=53.4
Q ss_pred CCCCeEEEcCCCCC-----CCHH----HHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce
Q 026659 4 RSSRTLYVGNLPGD-----TRMR----EVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (235)
Q Consensus 4 ~~~~~l~v~nl~~~-----~t~~----~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (235)
.|.-||.|.-+.+. .-++ +|.+.|..||++.=+++. .+.-.|+|.+-++|.+|+. |+|..+.|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 35566767655511 2222 678889999999888887 3568999999999999999 9999999999
Q ss_pred EEEEeccC
Q 026659 75 LRVELAHG 82 (235)
Q Consensus 75 i~v~~~~~ 82 (235)
|+|.+..+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99998664
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.70 E-value=0.00014 Score=54.91 Aligned_cols=99 Identities=27% Similarity=0.238 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCCCccCCceEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC
Q 026659 56 RDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 135 (235)
Q Consensus 56 ~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~ 135 (235)
.-|..|-..|++....|+.|.|.|+.. ..|+|.||..-++.+.+.+.|..||+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------a~l~V~nl~~~~sndll~~~f~~fg~ 57 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------------------------AELYVVNLMQGASNDLLEQAFRRFGP 57 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------------------------ceEEEEecchhhhhHHHHHhhhhcCc
Confidence 345667777999999999999999875 26999999999999999999999999
Q ss_pred ceEEEEEecC---CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 136 VCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 136 v~~~~~~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
|....+.-|. ..+-++|+|.....|..|+..+.-.-+.+.......
T Consensus 58 ~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~ 106 (275)
T KOG0115|consen 58 IERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPV 106 (275)
T ss_pred cchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCcc
Confidence 9886665443 345899999999999999998866666554443333
No 165
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00021 Score=59.18 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=54.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEecC---CCCCCeEEEEecCHHHHHHHHH
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~i~~~~~---~~~~g~afV~f~~~~~a~~a~~ 63 (235)
++.+|||||+||.-++.++|..+|+ .||.|..+-|-.+ +-++|-|-|+|.+..+-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 6889999999999999999999999 7999999888443 5679999999999999999997
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.64 E-value=0.00029 Score=46.33 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=47.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEE-E----------EecCCccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~-~----------~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
....|.|-+.|+. ....+.++|++||+|.... + ......+...|+|.++.+|.+|| ..||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 3457888888877 5677888999999987764 0 11223349999999999999999 5899999885
No 167
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.61 E-value=4.2e-05 Score=61.76 Aligned_cols=65 Identities=28% Similarity=0.361 Sum_probs=55.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC--------CCC--------CCeEEEEecCHHHHHHHHHhcCCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--------PRP--------PGYAFLEFEDYRDAEDAIRGRDGY 68 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~--------~~~--------~g~afV~f~~~~~a~~a~~~l~g~ 68 (235)
++++|.+.|||.+-.-+-|.+||..+|.|..|.+... +.+ +-+|+|+|.+.+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999888999999999999999999433 111 456999999999999999977654
Q ss_pred c
Q 026659 69 N 69 (235)
Q Consensus 69 ~ 69 (235)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 168
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.58 E-value=9.3e-06 Score=64.67 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=53.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (235)
++|+|++|+..+...++.+.|..+|+|....+.. +-...+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6899999999999999999999999998776632 2335678899999999999999 7787665
No 169
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=0.0001 Score=64.45 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=69.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
..|||.|.|+..|.++|+.++..+|.+....+ ...|+++|.|||.|.++.+|..++...++..+..+.+.|..+.+..
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 46899999999999999999999999999877 4578999999999999999999999999988888888888876643
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.50 E-value=0.00012 Score=55.41 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=43.1
Q ss_pred HHHHHHHH-hcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 124 QDLKDHMR-RAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 124 ~~l~~~f~-~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
+++...|. +||+|+.+.+-.+.. .|-++|.|...++|+.|+..|||..+.|+.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi 140 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPI 140 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcc
Confidence 44555555 899999987765543 2568999999999999999999999999644
No 171
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.49 E-value=0.0011 Score=45.83 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=58.5
Q ss_pred CCCCCeEEEcCCCCCC----CHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 3 SRSSRTLYVGNLPGDT----RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~----t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
+.|..+|.|.=|..++ +...+...++.||+|..|.+- .+.-|.|.|.+..+|..|+.+++. ...|..+++.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 4567788887666654 333466677899999999875 267799999999999999998876 6788889988
Q ss_pred ecc
Q 026659 79 LAH 81 (235)
Q Consensus 79 ~~~ 81 (235)
|..
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 865
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.39 E-value=0.00063 Score=53.54 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=55.5
Q ss_pred CCCceEEEeCCCCCCCHHH------HHHHHHhcCCceEEEEEecCCc-----c--EEEEEEcCHHHHHHHHHHhcCCeec
Q 026659 107 RSDYRVLVTGLPSSASWQD------LKDHMRRAGDVCFSQVFRDRGG-----M--TGIVDYTSYDDMKYAIRKLDRSEFR 173 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~------l~~~f~~~g~v~~~~~~~~~~~-----~--~~fV~f~~~~~A~~a~~~l~g~~~~ 173 (235)
....-+||-+|++.+..++ -.++|.+||.|..+.+.+.... + -.||+|.+.++|.++|.+.+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3445789999998886665 3579999999999888765311 2 2489999999999999999999999
Q ss_pred Cc
Q 026659 174 NA 175 (235)
Q Consensus 174 g~ 175 (235)
|+
T Consensus 192 Gr 193 (480)
T COG5175 192 GR 193 (480)
T ss_pred Cc
Confidence 94
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.31 E-value=0.0018 Score=40.52 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=41.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcC
Q 026659 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (235)
.+|+ +|......||.++|+.||.|.--++.. .-|||...+.+.|..|+..+.
T Consensus 12 Fhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 12 FHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEE---TT--HHHHHHHCCCCCCEEEEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred EEEe-CchHhhhhhHHHHhccCCcEEEEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 4454 999999999999999999998877763 469999999999999998775
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.26 E-value=0.00045 Score=56.02 Aligned_cols=66 Identities=14% Similarity=0.257 Sum_probs=55.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEec---CC--------------ccEEEEEEcCHHHHHHHHHHh
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RG--------------GMTGIVDYTSYDDMKYAIRKL 167 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~---~~--------------~~~~fV~f~~~~~A~~a~~~l 167 (235)
+.-+..+|.+.|||.+-.-+.|.++|..+|.|..|.|... +. .-+|+|+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3346789999999999999999999999999999999876 21 127999999999999999877
Q ss_pred cCC
Q 026659 168 DRS 170 (235)
Q Consensus 168 ~g~ 170 (235)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 544
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0012 Score=55.57 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=55.1
Q ss_pred CCceEEEeCCCCCCC------HHHHHHHHHhcCCceEEEEEecCCc---cEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 108 SDYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t------~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
-+..|+|.|+|---. ...|..+|+++|.++...+..+..+ ||.|++|.++.+|..|++.|||..+.-
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 345788999886432 3457789999999999988866543 699999999999999999999999864
No 176
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.24 E-value=0.0034 Score=42.11 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=48.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCC-CCCeEEEEecCHHHHHHHHHhcCCCccCC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPR-PPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~~~~-~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (235)
...+.+...|+.++.++|..+.+.+- .|..+++..++. .+-.+.|.|.+.++|+.....+||..|..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444444555556666666666654 677888877765 56679999999999999999999998853
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.23 E-value=0.0012 Score=51.01 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCceEEEEEecCCc-----cEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 123 WQDLKDHMRRAGDVCFSQVFRDRGG-----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 123 ~~~l~~~f~~~g~v~~~~~~~~~~~-----~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
+.++.+.+.+||.|..|.|.-.++. --.||+|...++|.+|+.-|||..|+|+.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 5678889999999999988876543 268999999999999999999999999543
No 178
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.21 E-value=1.4e-05 Score=67.87 Aligned_cols=123 Identities=16% Similarity=0.094 Sum_probs=83.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
+..+|||+|+...+..+-+..+...+|-|..+.... |+|..|.....+..|+..++-..++|..+.+..-...-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~ 112 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTI 112 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhhh
Confidence 567899999999999999999999999988876652 99999999999999999999999999888877643222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC
Q 026659 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 135 (235)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~ 135 (235)
.......... ......+.++ ...+...+.++|....+......+...+.
T Consensus 113 ~n~~k~~~~~-~~~~~~f~p~-~srr~e~i~~k~~~l~~~~~~~~~~is~s 161 (668)
T KOG2253|consen 113 ENADKEKSIA-NKESHKFVPS-SSRRQESIQNKPLSLDEQIHKKSLQISSS 161 (668)
T ss_pred cCccccccch-hhhhcccCCc-hhHHHHHhhccccchhHHHHHHHHhccch
Confidence 1111100000 1111111121 11455677777776666666655554443
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.21 E-value=0.0012 Score=51.04 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCCeeEEEEecC-C---CCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 20 MREVEDLFYKYGPIVDIDLKIP-P---RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 20 ~~~l~~~F~~~G~i~~i~~~~~-~---~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
++++.....+||.|..|.|... + ...--.||+|...++|.+|+--|||.+|+|+.+..-+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3456777889999999888432 1 223358999999999999999999999999998776643
No 180
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.10 E-value=0.0012 Score=52.39 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=57.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeec
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~ 173 (235)
.....++||.+||..+++.+|.++|.++|.|.. +.+.++. .++-|.|.|.+...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345568999999999999999999999987643 2333332 3468999999999999999999999999
Q ss_pred Cc
Q 026659 174 NA 175 (235)
Q Consensus 174 g~ 175 (235)
+.
T Consensus 143 gn 144 (351)
T KOG1995|consen 143 GN 144 (351)
T ss_pred CC
Confidence 93
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.07 E-value=0.00055 Score=57.75 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHh-cCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeec
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~ 173 (235)
....+.|+|.||-..+|.-+|++++.+ .|.|+.. ..|..+-.|||.|.+.++|.....+|||....
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIKShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIKSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhhcceeEecccHHHHHHHHHHHhccccC
Confidence 346678999999999999999999995 5566655 44555558999999999999999999998874
No 182
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.02 E-value=0.00047 Score=52.19 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=58.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---------cc-------EEEEEEcCHHHHHHHHHHhcCCee
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---------GM-------TGIVDYTSYDDMKYAIRKLDRSEF 172 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---------~~-------~~fV~f~~~~~A~~a~~~l~g~~~ 172 (235)
.-.||+++||+.....-|+++|..||.|-.+.+..... ++ .|+|+|.+...|......|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 35799999999999999999999999999988875421 11 489999999999999999999999
Q ss_pred cCc
Q 026659 173 RNA 175 (235)
Q Consensus 173 ~g~ 175 (235)
+|+
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 995
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.01 E-value=0.0046 Score=43.30 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 124 ~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
.+|.+.|..||++..+++..+ .-+|+|.+-..|.+|+ .++|.++.|+.+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g~~l 99 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNGRTL 99 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETTEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECCEEE
Confidence 367778889999999988876 5899999999999999 699999999433
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.88 E-value=0.01 Score=48.75 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCCC-CCeEEEEecCHHHHHHHHHhcCCCccCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRP-PGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~~~~~-~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (235)
+++.|+|-.+|..+|..||..|...+- .|.+|.++.++.+ +-.+.|.|.+.++|...+..+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378899999999999999999998775 7899999887754 4568999999999999999999998853
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.66 E-value=0.023 Score=33.73 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=43.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CCceEEEEEecCCccEEEEEEcCHHHHHHHHHHh
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~---g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l 167 (235)
..|+|.|+. +.+.++|+.+|..| .....+..+.|. .|-|-|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 378999985 57889999999998 234567777776 5889999999999999764
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.58 E-value=0.0022 Score=47.06 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEEecC-----CCCCCeEEEEecCHHHHHHHHHhcCCCccCC--
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYK-YGPI---VDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-- 72 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i---~~i~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-- 72 (235)
.....|.|.+||+.+|++++.+.++. ++.- ..+.-... ...-.-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46789999999999999999997776 6654 23321111 1223469999999999999999999987732
Q ss_pred ---ceEEEEeccCCC
Q 026659 73 ---YRLRVELAHGGR 84 (235)
Q Consensus 73 ---~~i~v~~~~~~~ 84 (235)
..-.|++|.-.+
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 334666665433
No 187
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.56 E-value=0.0015 Score=53.68 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 5 SSRTLYVGNLPGDT-RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 5 ~~~~l~v~nl~~~~-t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
+.+.|-+.-+|... |.++|...|.+||.|.+|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|.++.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 45666666666663 77889999999999999998543 4569999999999988888 8999999999999998864
Q ss_pred C
Q 026659 84 R 84 (235)
Q Consensus 84 ~ 84 (235)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.54 E-value=0.027 Score=33.40 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=41.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhc
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKY----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l 65 (235)
..|+|.|+. +++.++|+.+|..| ++ ..|....+ .-|=|.|.+++.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 578999985 58999999999999 43 34444432 34889999999999999764
No 189
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.45 E-value=0.0028 Score=49.89 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=13.5
Q ss_pred CCCeEEEEecCHHHHHHHHH
Q 026659 44 PPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 44 ~~g~afV~f~~~~~a~~a~~ 63 (235)
.+.-.||-|.-+.-|.+++.
T Consensus 172 lRT~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 172 LRTDVFVRYSPESIACACIY 191 (367)
T ss_pred cccceeeecCHHHHHHHHHH
Confidence 34557888877777776665
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.34 E-value=0.026 Score=35.46 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=40.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcC
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g 169 (235)
.+|--..|..+...||.++|..||.|. |..+.|. .|||...+.+.|..|+..+.-
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 344444999999999999999999985 4444443 799999999999999887753
No 191
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.25 E-value=0.0021 Score=50.76 Aligned_cols=77 Identities=29% Similarity=0.413 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHH---HHhhcCCeeEEEEecCC------CCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 026659 7 RTLYVGNLPGDTRMREVED---LFYKYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~---~F~~~G~i~~i~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (235)
.-+||-+|+..+..+.+.+ .|.+||.|..|.+..+. ...--+||+|...++|..||...+|..++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4578889998876666644 78889999998885422 11123899999999999999999999999999887
Q ss_pred EeccCC
Q 026659 78 ELAHGG 83 (235)
Q Consensus 78 ~~~~~~ 83 (235)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776543
No 192
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.23 E-value=0.043 Score=34.05 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHhhcC-----CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 17 DTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 17 ~~t~~~l~~~F~~~G-----~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+++.+|..++...+ .|-.|.+. ..|+||+-... .|..++..|++..+.|+.+.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 488999999998764 45567776 57899987754 788899999999999999999875
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.98 E-value=0.0094 Score=45.40 Aligned_cols=75 Identities=28% Similarity=0.366 Sum_probs=59.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCcc----CCceEEEEec
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF----DGYRLRVELA 80 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~----~g~~i~v~~~ 80 (235)
..|||.||+.-++-+.|.+-|+.||+|..-.++. .++..+-++|.|...-.|.+|+..+.-.-| .+++.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999998755533 467788899999999999999987743323 4556566554
Q ss_pred c
Q 026659 81 H 81 (235)
Q Consensus 81 ~ 81 (235)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.95 E-value=0.041 Score=40.59 Aligned_cols=62 Identities=29% Similarity=0.365 Sum_probs=45.8
Q ss_pred CHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcC--CCccCCceEEEEeccCC
Q 026659 19 RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHGG 83 (235)
Q Consensus 19 t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~i~v~~~~~~ 83 (235)
..+.|+.+|..|+.+..+.... +-+-..|.|.+.+.|..|...|+ +..+.|..+.|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~---sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK---SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET---TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC---CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999888877753 24568999999999999999999 89999999999998543
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.91 E-value=0.015 Score=49.10 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=56.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC--CccCCceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYK--YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~--~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~i~v~~ 79 (235)
.-|.|.+.-||..+-.|+++.||.. |-++++|.+-. -.-.||+|++..+|+.|++.|.. ..|.|+.|...+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~----N~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH----NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee----cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 3577889999999999999999975 66888888843 23489999999999999987754 466776665443
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.88 E-value=0.19 Score=33.71 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=47.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCc--cEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~--~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
.+.+-..|..++..+|..+...+- .|..+++.++... -.+.++|.+.++|..-...+||+.++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444455556666765555554 5667888887543 479999999999999999999999975
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.84 E-value=0.044 Score=42.87 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=57.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce-EEEEeccCCC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-LRVELAHGGR 84 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-i~v~~~~~~~ 84 (235)
..=|-|-++|+. .-..|..+|++||+|...... ..-.+-+|.|....+|.+||. .||+.|+|.. |-|..+..+.
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 344666788775 456789999999999887554 235789999999999999999 8999997754 5677766543
No 198
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.62 E-value=0.013 Score=46.28 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=6.0
Q ss_pred CCCHHHHHHHHH
Q 026659 120 SASWQDLKDHMR 131 (235)
Q Consensus 120 ~~t~~~l~~~f~ 131 (235)
.+++++|.+++.
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 345555555443
No 199
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.42 E-value=0.77 Score=36.09 Aligned_cols=163 Identities=12% Similarity=0.160 Sum_probs=97.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC----------CCCCeEEEEecCHHHHHHHH----HhcCC--Cc
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP----------RPPGYAFLEFEDYRDAEDAI----RGRDG--YN 69 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~----------~~~g~afV~f~~~~~a~~a~----~~l~g--~~ 69 (235)
++.|.+.|+..+++-..+...|-+||+|+.|++.... ....-+.+.|-+.+.|...+ ..|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999999996532 33456899999999987644 22322 34
Q ss_pred cCCceEEEEeccCCCCCCCC-CCCCCCC---C-CCCC-CCCCCCCCceEEEeCCCCCCCHHHH-HHHH---HhcCC----
Q 026659 70 FDGYRLRVELAHGGRRHSSS-MDRYSSY---S-SGGS-RGVSRRSDYRVLVTGLPSSASWQDL-KDHM---RRAGD---- 135 (235)
Q Consensus 70 ~~g~~i~v~~~~~~~~~~~~-~~~~~~~---~-~~~~-~~~~~~~~~~l~v~nl~~~~t~~~l-~~~f---~~~g~---- 135 (235)
+....|.+.+..-....... .+....+ - ..-. .-......+.|.|. +...+..+++ .+.+ ..-+.
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceEE
Confidence 56677777776522111110 0000000 0 0000 11223344556665 3344433332 2222 22232
Q ss_pred ceEEEEEecC------CccEEEEEEcCHHHHHHHHHHhcC
Q 026659 136 VCFSQVFRDR------GGMTGIVDYTSYDDMKYAIRKLDR 169 (235)
Q Consensus 136 v~~~~~~~~~------~~~~~fV~f~~~~~A~~a~~~l~g 169 (235)
++.+.++... +..||.++|-+...|.+.++-+..
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 4555555332 235999999999999999887663
No 200
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.40 E-value=0.12 Score=43.81 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=47.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHh--cCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHh
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRR--AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~--~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l 167 (235)
.+.+.+..||..+..++++.+|.. +..+++|.+..+.+ =||+|++..||+.|.+.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYL 232 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHH
Confidence 467889999999999999999985 67888888877654 589999999999997554
No 201
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.079 Score=45.16 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEecC-------------CC----------------------
Q 026659 4 RSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKIP-------------PR---------------------- 43 (235)
Q Consensus 4 ~~~~~l~v~nl~~~-~t~~~l~~~F~~~----G~i~~i~~~~~-------------~~---------------------- 43 (235)
.++++|-|.||.|+ +...+|..+|+.| |.|..|.|..+ |.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 46789999999998 8999999999977 58999988432 11
Q ss_pred ---------------CCCeEEEEecCHHHHHHHHHhcCCCccCCc--eEEEEecc
Q 026659 44 ---------------PPGYAFLEFEDYRDAEDAIRGRDGYNFDGY--RLRVELAH 81 (235)
Q Consensus 44 ---------------~~g~afV~f~~~~~a~~a~~~l~g~~~~g~--~i~v~~~~ 81 (235)
.--||.|+|.+.+.|.+.+..++|..|... .|-+.+..
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 013799999999999999999999999654 44444443
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.34 E-value=0.042 Score=45.58 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=54.9
Q ss_pred ceEEEeCCCCCC-CHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 110 YRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 110 ~~l~v~nl~~~~-t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
+.|.+.-.|... +..+|..+|.+||.|..|.+-... -.|.|+|.+..+|-.|- ..++..|++ +.|++.....
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~-~s~~avlnn----r~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAY-ASHGAVLNN----RFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchh-ccccceecC----ceeEEEEecC
Confidence 344444455554 578999999999999999887662 27999999999997775 589999999 6666665544
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.12 E-value=0.13 Score=42.56 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=58.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCc--cEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~--~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
...|.|-.+|..++--||..|+..+- .|..+++++|... -++.|+|.+.++|..-...+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998764 6888999987543 489999999999999999999999975
No 204
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.95 E-value=0.032 Score=45.62 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=46.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCe-ecC
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE-FRN 174 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~-~~g 174 (235)
.+|++||.+.++..+|..+|...---..-.++. ..||+||.+.+...|.+|++.++|+. +.|
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqG 65 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQG 65 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcC
Confidence 689999999999999999998542111111111 12499999999999999999988874 444
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.87 E-value=0.2 Score=30.25 Aligned_cols=55 Identities=25% Similarity=0.442 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 026659 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (235)
Q Consensus 17 ~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (235)
.++-++|+..+..|+ ...|....+ | -||.|.+..+|++++...+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDRT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecCC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999996 444544433 3 689999999999999999999888877654
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.77 E-value=0.072 Score=34.09 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=45.7
Q ss_pred EEEEecCHHHHHHHHHhcCC--CccCCceEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 026659 48 AFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (235)
Q Consensus 48 afV~f~~~~~a~~a~~~l~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 125 (235)
|.|+|.++.-|+..+. +.. ..+.+..+.|....-....... -.-.......+|.|.|||....+++
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k-----------~qv~~~vs~rtVlvsgip~~l~ee~ 68 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQK-----------FQVFSGVSKRTVLVSGIPDVLDEEE 68 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceE-----------EEEEEcccCCEEEEeCCCCCCChhh
Confidence 6899999999999887 333 3445666666554321111000 0011123556899999999999999
Q ss_pred HHHHHH
Q 026659 126 LKDHMR 131 (235)
Q Consensus 126 l~~~f~ 131 (235)
|++...
T Consensus 69 l~D~Le 74 (88)
T PF07292_consen 69 LRDKLE 74 (88)
T ss_pred heeeEE
Confidence 987654
No 207
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.76 E-value=0.09 Score=38.63 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHh-cCCc---eEEEEEecCC------ccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDRG------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~-~g~v---~~~~~~~~~~------~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
....|.|.+||+.+|++++.+.+.. ++.. .++....... -.-|||.|.+.+++..-...++|..+-+...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999987776 6655 2332112211 1279999999999999999999988866443
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.64 E-value=0.14 Score=40.12 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=50.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
+..|.|-+.|+... .-|..+|.+||.|++.... .++.+-+|.|.+..+|.+||. .||+.|+|.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 45677878776544 4567789999999765554 555699999999999999995 789998885
No 209
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.54 E-value=0.12 Score=36.07 Aligned_cols=62 Identities=8% Similarity=0.083 Sum_probs=44.7
Q ss_pred CCceEEEeCCCCCC----CHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCee
Q 026659 108 SDYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (235)
Q Consensus 108 ~~~~l~v~nl~~~~----t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~ 172 (235)
+-.+|.|.=|..++ +...+...++.||+|.++..... ..|.|.|.+..+|..|+.+++....
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr---qsavVvF~d~~SAC~Av~Af~s~~p 150 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR---QSAVVVFKDITSACKAVSAFQSRAP 150 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC---ceEEEEehhhHHHHHHHHhhcCCCC
Confidence 44577776555544 33344555678999998876533 3799999999999999999887443
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.25 E-value=0.073 Score=47.38 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=59.8
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc--CCceEEEEeccCCC
Q 026659 10 YVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVELAHGGR 84 (235)
Q Consensus 10 ~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~i~v~~~~~~~ 84 (235)
++-|.+-..+-.-|..+|++||.|.+.+...+ -..|.|+|...+.|..|+..|+|..+ .|-+.+|.+|+.-.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34455666788889999999999999998643 56799999999999999999999766 68888999887544
No 211
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.94 E-value=0.064 Score=42.65 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=53.0
Q ss_pred CceEEEeCCCCCCCHHHHH---HHHHhcCCceEEEEEecCC----c---cEEEEEEcCHHHHHHHHHHhcCCeecCcc
Q 026659 109 DYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRG----G---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~---~~f~~~g~v~~~~~~~~~~----~---~~~fV~f~~~~~A~~a~~~l~g~~~~g~~ 176 (235)
..-+||-+|+.....+.+. +.|.+||.|..+.+..+.. . ..++|+|...++|..||...+|..+.|+.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3457778888776544443 3788999999988887652 1 26899999999999999999999998864
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.80 E-value=0.54 Score=34.79 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhc--CCeecCc
Q 026659 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNA 175 (235)
Q Consensus 121 ~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~--g~~~~g~ 175 (235)
-..+.|.++|..++.+..+..+..-. -..|.|.+.++|..|...|+ +..+.|.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~ 61 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK 61 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC
Confidence 35688999999999998877776544 68899999999999999999 9999994
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.45 E-value=0.069 Score=47.52 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=56.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 112 l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
..+.|.+-..+-.-|..+|.+||.|..+...++-+ +|.|+|...+.|..|+++++|+++.-- ....+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~--g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT--GAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc--CCceeEEeccc
Confidence 33444455667778999999999999999988877 899999999999999999999986421 13455555443
No 214
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=92.41 E-value=0.18 Score=35.93 Aligned_cols=120 Identities=17% Similarity=0.110 Sum_probs=77.7
Q ss_pred EEEcCCC--CCCCHHHHHHHHhhc-CCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCC
Q 026659 9 LYVGNLP--GDTRMREVEDLFYKY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (235)
Q Consensus 9 l~v~nl~--~~~t~~~l~~~F~~~-G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~ 85 (235)
..||.+. ...+-..|...+.+. +....+.+..- ..++..+.|.+++++..++. .....+.|..+.+....+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 4455552 246677777777653 44334444321 26899999999999999987 444566777777776653322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEEecC
Q 026659 86 HSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (235)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~ 145 (235)
... .........|.|.|||.. .+++-+..+.+.+|.+..+......
T Consensus 95 ~~~--------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSE--------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred ccc--------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 111 011122346888999988 4788889999999999887766443
No 215
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.61 E-value=0.24 Score=39.71 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=54.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcC--CceEEEEEec----CCccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRD----RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~----~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
..+.+||+||-+-+|.+||.+.+...| .+..+++..+ ..+|||+|-..+.....+.++.|-.+.+.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 346899999999999999999888766 3444444433 3457999999999999999999888888874
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.45 E-value=0.39 Score=41.77 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=57.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
.+.++..++||+|+...+..+-+..+...+|.|..+.... |||..|....-+..|+..++-..++|.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 3456678999999999999999999999999998876554 899999999999999988887777664
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.22 E-value=0.21 Score=38.81 Aligned_cols=65 Identities=20% Similarity=0.491 Sum_probs=45.7
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEEec--------CCCC-----CCe---------EEEE
Q 026659 6 SRTLYVGNLPGD------------TRMREVEDLFYKYGPIVDIDLKI--------PPRP-----PGY---------AFLE 51 (235)
Q Consensus 6 ~~~l~v~nl~~~------------~t~~~l~~~F~~~G~i~~i~~~~--------~~~~-----~g~---------afV~ 51 (235)
..||++.+||.. -+++-|...|..||.|..|.++. +++. .|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888888863 36777999999999999988832 2222 223 4677
Q ss_pred ecCHHHHHHHHHhcCCCcc
Q 026659 52 FEDYRDAEDAIRGRDGYNF 70 (235)
Q Consensus 52 f~~~~~a~~a~~~l~g~~~ 70 (235)
|.....-..|+..|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 7766666777777777654
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.01 E-value=4.1 Score=25.08 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHhcCC-----ceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 119 SSASWQDLKDHMRRAGD-----VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 119 ~~~t~~~l~~~f~~~g~-----v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
..++..+|..++...+. |-.+.+... |.||+-... .|..++..|++..+.| ..++++.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~g----k~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKG----KKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS--------EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCC----eeEEEEE
Confidence 45788888888887654 444555544 888887665 7889999999999999 5555543
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.17 E-value=3 Score=32.77 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=35.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCCCCCeEEEEecCHH
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYR 56 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~~~~~~g~afV~f~~~~ 56 (235)
+-||++|||.++.-.||+..+.+.| ....+... .+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee---cCCcceeEecCCcc
Confidence 5599999999999999999998876 33444332 34678999997643
No 220
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=84.80 E-value=6.8 Score=28.69 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=54.4
Q ss_pred CCeEEEcCCCCCC--C---HHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCc-eEEEEe
Q 026659 6 SRTLYVGNLPGDT--R---MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVEL 79 (235)
Q Consensus 6 ~~~l~v~nl~~~~--t---~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~i~v~~ 79 (235)
.+++++.+|+..+ + ......+|.+|.+..-..+. ++.+..-|.|.+++.|..|...+++..|.|. .++..+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 3557778887763 2 22345566666555554443 2356788999999999999999999999888 888888
Q ss_pred ccCCC
Q 026659 80 AHGGR 84 (235)
Q Consensus 80 ~~~~~ 84 (235)
+....
T Consensus 87 aQ~~~ 91 (193)
T KOG4019|consen 87 AQPGH 91 (193)
T ss_pred ccCCC
Confidence 87543
No 221
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=84.66 E-value=5.2 Score=25.43 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=42.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
.-|+-.++..++..+|.+.++. || .|..|..........=|||.+.....|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 4555567889999999999987 56 77777775544445569999999888887654
No 222
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=84.33 E-value=0.4 Score=38.17 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=6.1
Q ss_pred CCHHHHHHHHhhc
Q 026659 18 TRMREVEDLFYKY 30 (235)
Q Consensus 18 ~t~~~l~~~F~~~ 30 (235)
..+.+|..+|+.|
T Consensus 169 qpp~dLw~WyEpy 181 (453)
T KOG2888|consen 169 QPPADLWDWYEPY 181 (453)
T ss_pred CChhHHHHHhhhh
Confidence 3444455555444
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.61 E-value=6.7 Score=30.88 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=38.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHH
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYD 158 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~ 158 (235)
...-++++||+.++.-.||...+.+-+.+. ..+......+-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 345699999999999999999998876543 34445555568999998754
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=83.41 E-value=7.3 Score=24.31 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=41.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
.-|+-.++..++..+|...++. || .|..|..........=|||.+.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4566678899999999999987 56 67777664443344569999998888876543
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=83.03 E-value=1.1 Score=30.42 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=30.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCH-HHHHHHHH
Q 026659 8 TLYVGNLPGD---------TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY-RDAEDAIR 63 (235)
Q Consensus 8 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~-~~a~~a~~ 63 (235)
++.|-|++.. ++.++|.+.|..|.+++-.-+.......|++.|+|... .--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 3556677543 46678999999999876555544455689999999754 33444554
No 226
>PF14893 PNMA: PNMA
Probab=82.48 E-value=1.9 Score=35.07 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=36.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEe----cCCCCCCeEEEEecCHH
Q 026659 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLK----IPPRPPGYAFLEFEDYR 56 (235)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~i~~~----~~~~~~g~afV~f~~~~ 56 (235)
|.-++.+.|.|.+||.+|++++|++.+.. +-+.-...+. .......-|+|+|...-
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc
Confidence 56678899999999999999999988764 2222222221 11122445788876443
No 227
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=82.11 E-value=3.8 Score=26.16 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=35.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED 54 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~ 54 (235)
...-|||||++..+-+.-...+.+..+.-.-+-+..+...+||+|-.+.+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 45679999999988877766676666555555455555589999988743
No 228
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=80.46 E-value=5.9 Score=34.66 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=26.2
Q ss_pred CCCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEEecC
Q 026659 103 GVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (235)
Q Consensus 103 ~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~ 145 (235)
+.-...+..++|.+.+.. ++-.--.+.+.+.|.+-.|.+.+..
T Consensus 55 G~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 55 GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred cccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 334455677888777653 3333334455678888877776553
No 229
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=78.74 E-value=0.76 Score=41.27 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.7
Q ss_pred eEEEEec
Q 026659 47 YAFLEFE 53 (235)
Q Consensus 47 ~afV~f~ 53 (235)
|+.+...
T Consensus 61 y~~t~~~ 67 (1194)
T KOG4246|consen 61 YGSTSLS 67 (1194)
T ss_pred ccccchh
Confidence 3334333
No 230
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=76.01 E-value=6.1 Score=25.84 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=33.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCH
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY 55 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~ 55 (235)
...-||||+++..+-+.--..+-+.++.-.-+-+..+...+||+|-++.+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 345699999988877665555555555433343345556679999887654
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=74.59 E-value=8.4 Score=22.82 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=16.5
Q ss_pred HHHHHHHhhcCCeeEEEEe
Q 026659 21 REVEDLFYKYGPIVDIDLK 39 (235)
Q Consensus 21 ~~l~~~F~~~G~i~~i~~~ 39 (235)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999888773
No 232
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=73.60 E-value=3.4 Score=33.83 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=49.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecC-----CCCCCeEEEEecCHHHHHHHHHhcCCCcc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 70 (235)
.-+.|.|.+||+..++.+|.+-...|- .+....+... ..--+.|||.|..+++.......++|+.|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 356788999999999999998888764 3333333211 12356799999999999999898999766
No 233
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=73.53 E-value=5.3 Score=29.18 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=35.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CC--CCCCeEEEEecCHHHHHHHHH
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PP--RPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~--~~~g~afV~f~~~~~a~~a~~ 63 (235)
+++|.. +.+...++|.++-+ |.+..+.+.. .+ ..+|-.||+|.+.++|.+.+.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 344444 22333344444444 7999998843 33 457889999999999998776
No 234
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=73.28 E-value=15 Score=22.27 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=42.1
Q ss_pred HHHHHHHhhcC-CeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 21 ~~l~~~F~~~G-~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
++|.+-|...| +|..+.-.. ++.+....||+.+...+...+ ++=..+.+..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 57888888888 777766533 456678889998877664433 455677888899887654
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.11 E-value=10 Score=31.42 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=42.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
..|=|.++|.....+||...|+.|+ .--.|+.+. ...||-.|.....|..||.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD----dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD----DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEee----cceeEEeecchHHHHHHhh
Confidence 5688999999999999999999996 233343333 3569999999999999998
No 236
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=72.94 E-value=18 Score=30.09 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=57.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEecC-------------CC---------------------
Q 026659 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKIP-------------PR--------------------- 43 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~-~t~~~l~~~F~~~----G~i~~i~~~~~-------------~~--------------------- 43 (235)
+.++.+|-|-||.|+ +...+|..+|+.| |++..|.|..+ |-
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 567889999999998 8899999999876 47777776321 10
Q ss_pred ---------------C-------------------CCeEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEec
Q 026659 44 ---------------P-------------------PGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELA 80 (235)
Q Consensus 44 ---------------~-------------------~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~ 80 (235)
. --||.|++.+.+.++..+..++|..+.. ..+.+.+.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0 1278899999999999999999988854 33444443
No 237
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=70.60 E-value=16 Score=22.18 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=42.4
Q ss_pred HHHHHHHhhcC-CeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 21 ~~l~~~F~~~G-~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
++|.+-|...| ++..+.-+. ++.+...-||+.....+... .|+=..+.|..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 57888999999 777776643 35567788888876654444 4566778899999887553
No 238
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=68.47 E-value=19 Score=20.30 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHH
Q 026659 20 MREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (235)
Q Consensus 20 ~~~l~~~F~~~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (235)
-.++...|.+.| .|..+.+.......+..-+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 345667788777 7888877554445677777888888877765
No 239
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=65.88 E-value=14 Score=23.59 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEecCCCCCCeEEEEecC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKIPPRPPGYAFLEFED 54 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~i~~~~~~~~~g~afV~f~~ 54 (235)
...-||||+++..+-+.--..+-+. .++-.-+-+..+...+||+|-++.+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 3567999999888766544444444 3333333334455678999988765
No 240
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=65.05 E-value=32 Score=24.40 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=37.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCCeEEEEecCHHHHHHH
Q 026659 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDA 61 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a 61 (235)
+-|+-.++..++..+|.+.++. |+ .|..|.........-=|||.+....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 4455567788999999999987 55 566666544333344599999877775543
No 241
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=61.93 E-value=7.4 Score=29.76 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~ 38 (235)
...+||+-|||..+|++.|..+.+++|.+..+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 5678999999999999999999999996666544
No 242
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=61.68 E-value=7.1 Score=28.62 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=41.7
Q ss_pred eEEEeCCCCCCC-----HHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 111 RVLVTGLPSSAS-----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 111 ~l~v~nl~~~~t-----~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
++.+.+++..+- ......+|.++.+.....+.+.- +..-|.|.+++.|..|..++++..+.|+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 466666665542 22344456655554433333322 2566899999999999999999999996
No 243
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.10 E-value=1.1 Score=38.29 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (235)
.+|+||+.|+++.++-++|..+...+--+..+.+.. ......+..|.|.---....|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 468899999999999999999998886566655522 12345678899987777777777788876644
No 244
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=60.06 E-value=33 Score=20.16 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=30.5
Q ss_pred CHHHHHHHHhhcC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 19 t~~~l~~~F~~~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
.-.+|.++|.+.| .|.++.....+. +++.-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH
Confidence 4566888888887 788887744433 5666666777767777776
No 245
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.99 E-value=33 Score=28.62 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=43.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEEecCCccEEEEEEcCHHHHHHHHH
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 165 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~ 165 (235)
..|-|.++|.....+||...|..|+. -..|.++.+. .||-.|.+...|..||-
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhh
Confidence 46889999999999999999999874 3345555554 79999999999999984
No 246
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=57.47 E-value=5.6 Score=36.12 Aligned_cols=6 Identities=50% Similarity=0.733 Sum_probs=2.3
Q ss_pred CCCCCc
Q 026659 224 YSPRSR 229 (235)
Q Consensus 224 r~~r~r 229 (235)
|.+|++
T Consensus 355 r~prRr 360 (1194)
T KOG4246|consen 355 RIPRRR 360 (1194)
T ss_pred cchHhh
Confidence 334433
No 247
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=57.16 E-value=15 Score=29.74 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=25.3
Q ss_pred EEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 48 AFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 48 afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
|||+|.+..+|..|.+.+.... +..+.+..|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999998554433 3455776665443
No 248
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=56.72 E-value=49 Score=21.04 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=40.3
Q ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCc-cEEEEEEcCHHHHHHHHHHh
Q 026659 113 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (235)
Q Consensus 113 ~v~nl~~~~t~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fV~f~~~~~A~~a~~~l 167 (235)
|.-..+...+..+|.+.++. || .|..+....-+.+ .-|+|++....+|.+...++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 33345778899999998886 66 6777777655543 47999999999888875443
No 249
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=54.64 E-value=46 Score=20.07 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 120 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 120 ~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
.++-++++..+..|+-. .+..+.. | -||.|.+..+|+++....+|+.+-+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t-G-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT-G-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC-E-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 56788999999988643 3333432 2 3699999999999999999998876
No 250
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.11 E-value=1.4e+02 Score=26.46 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=54.5
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHHHhc----CCceEEEEEec--------------C-------------C--------
Q 026659 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRD--------------R-------------G-------- 146 (235)
Q Consensus 107 ~~~~~l~v~nl~~~-~t~~~l~~~f~~~----g~v~~~~~~~~--------------~-------------~-------- 146 (235)
..+.+|-|.|+.+. +...+|..+|..| |.|..|.|... + .
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45678999999986 6889999999865 46777777532 1 0
Q ss_pred -------c---------cEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 147 -------G---------MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 147 -------~---------~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
+ .||.|+|.+.+.|......++|..+...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 0 1899999999999999999999999764
No 251
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=53.84 E-value=1.1e+02 Score=27.17 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=59.0
Q ss_pred CCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCCCCCCCCCCCCCCCCCC----CCCCCCCCceEEEeCCCCC
Q 026659 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGS----RGVSRRSDYRVLVTGLPSS 120 (235)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~v~nl~~~ 120 (235)
+--|||++.++..-+-....|+-..+.+..|.- ..++.=++..+.--.|....+ .-|+......+|+.+|+..
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg---~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTS 312 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEG---VGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTS 312 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccc---cCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCccccc
Confidence 446999999998888777777766554433321 111111111111111222211 1233445678999999999
Q ss_pred CCHHHHHHHHHhcCCceEEEEEec
Q 026659 121 ASWQDLKDHMRRAGDVCFSQVFRD 144 (235)
Q Consensus 121 ~t~~~l~~~f~~~g~v~~~~~~~~ 144 (235)
..++--.++.......+++.+.+.
T Consensus 313 lP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 313 LPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCHHHHHHHHHhCcccccceeecc
Confidence 988888888888888888888765
No 252
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=53.54 E-value=58 Score=20.93 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhcC-CceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcC
Q 026659 122 SWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (235)
Q Consensus 122 t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g 169 (235)
..+.+.++++..| +++.+.+..........+++++.+.|.++.-.+..
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 3566777888776 78888888877777888999999988887655443
No 253
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=51.43 E-value=47 Score=20.95 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=24.2
Q ss_pred CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCC
Q 026659 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (235)
Q Consensus 32 ~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 68 (235)
.|.++... +..+||-|||=.++.++..|+..+.+.
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 45555443 346999999999999999999877653
No 254
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=50.50 E-value=24 Score=27.90 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=12.9
Q ss_pred EEecCHHHHHHHHHhcCC-CccCCceEEEEe
Q 026659 50 LEFEDYRDAEDAIRGRDG-YNFDGYRLRVEL 79 (235)
Q Consensus 50 V~f~~~~~a~~a~~~l~g-~~~~g~~i~v~~ 79 (235)
|-|+|..-.+-.+..|.. ..++-+.|+|.+
T Consensus 57 lgfEDdVViefvynqLee~k~ldpkkmQiNl 87 (354)
T KOG2146|consen 57 LGFEDDVVIEFVYNQLEEAKNLDPKKMQINL 87 (354)
T ss_pred hccccchhHHHHHHHHhhhcCCCchheeeee
Confidence 445554444444444433 333334444443
No 255
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=49.06 E-value=14 Score=19.18 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHhhcCC
Q 026659 16 GDTRMREVEDLFYKYGP 32 (235)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (235)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999987653
No 256
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=48.90 E-value=3.4 Score=35.58 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=50.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc----cEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
..+.+++.|++++++-.+|..++..+..+..+.+..+... .+++|+|.-.-+...|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4567999999999999999999998877766555443221 368899987777777777777776654
No 257
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=48.20 E-value=57 Score=20.00 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=28.6
Q ss_pred HHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc
Q 026659 26 LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (235)
Q Consensus 26 ~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 70 (235)
-..+||.|..+.=. ..|+ |.|-+.++++..+..|....|
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 35589999887543 3555 458899999999988876543
No 258
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=47.22 E-value=94 Score=22.19 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=25.2
Q ss_pred eeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC
Q 026659 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (235)
Q Consensus 33 i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 67 (235)
|.+|.++. .-+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 55555532 3589999999988888999887765
No 259
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=46.94 E-value=95 Score=21.49 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=51.5
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHHhhcC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 5 SSRTLYVGNLPGD---TRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 5 ~~~~l~v~nl~~~---~t~~~l~~~F~~~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
+.-.|.|...... .+...+.+...+-| .++.+... .+-..|.|.+.++-.+|.+.|....-.+..+.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4556777766433 56778888888888 66666554 346889999999999999988776655555555554
Q ss_pred c
Q 026659 81 H 81 (235)
Q Consensus 81 ~ 81 (235)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 3
No 260
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=46.59 E-value=40 Score=26.93 Aligned_cols=53 Identities=8% Similarity=0.094 Sum_probs=43.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC-----------CccEEEEEEcCHHHHHH
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----------GGMTGIVDYTSYDDMKY 162 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-----------~~~~~fV~f~~~~~A~~ 162 (235)
+.|.+.|+...++--.+...|.+||+|+++.+..+. ......+.|-+.+.+..
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 468889999999999999999999999999998765 12367888888776654
No 261
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=46.05 E-value=58 Score=21.38 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC
Q 026659 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (235)
Q Consensus 17 ~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 67 (235)
+-++++|..+...-|.|.+|.+....-..=.+.+...+..+++..++.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 345677888888777999999955433344578888999999999988764
No 262
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.70 E-value=2.3e+02 Score=25.36 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=63.7
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcC--CCcc------CCceEEEEeccCCCCCCCCCC
Q 026659 20 MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNF------DGYRLRVELAHGGRRHSSSMD 91 (235)
Q Consensus 20 ~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~------~g~~i~v~~~~~~~~~~~~~~ 91 (235)
.++|.+.|..-+-|..+.+.. .||-++.+....-+......+. +..+ .|++|.|+++.+...
T Consensus 60 A~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt------ 129 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT------ 129 (577)
T ss_pred HHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC------
Confidence 344555555544566776652 3555555554444444434343 2222 578999999875443
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCc
Q 026659 92 RYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG 147 (235)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~ 147 (235)
..++|+.+-..+--+-|..++...| +|+....+.|.+.
T Consensus 130 ------------------kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~ 168 (577)
T COG0018 130 ------------------GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGT 168 (577)
T ss_pred ------------------CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHH
Confidence 2478999988888999999999998 6777777777543
No 263
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.29 E-value=33 Score=28.39 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=46.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEE-EEEecCCc------cEEEEEEcCHHHHHHHHHHhcCCeec
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFR 173 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~-~~~~~~~~------~~~fV~f~~~~~A~~a~~~l~g~~~~ 173 (235)
..+.|..||+..++++|.+....+..-.+. .+...... ..|+|.|..+++...-...++|..+-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 468899999999999999988887643333 33322111 26899999999977777777777653
No 264
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=44.17 E-value=78 Score=19.73 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=39.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCc-cEEEEEEcCHHHHHHHHHH
Q 026659 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRK 166 (235)
Q Consensus 112 l~v~nl~~~~t~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fV~f~~~~~A~~a~~~ 166 (235)
-|+-..+...+..+|...++. |+ .|..+....-+.. .-|||++.....|.+.-.+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 344456788999999998886 66 5666666654433 4799999998888876543
No 265
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.80 E-value=66 Score=27.99 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=43.2
Q ss_pred EEcCCCCCCC---HHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceE
Q 026659 10 YVGNLPGDTR---MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (235)
Q Consensus 10 ~v~nl~~~~t---~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i 75 (235)
+||||+.-.. ...|..+-.+||+|..+++=. .-.|...+.+.|+.|+. -++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 5677765433 345666667899999887721 13677889999999998 67888888886
No 266
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=42.87 E-value=8.6 Score=31.26 Aligned_cols=58 Identities=19% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEcCCCCCCC-------------HHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCC
Q 026659 10 YVGNLPGDTR-------------MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (235)
Q Consensus 10 ~v~nl~~~~t-------------~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 68 (235)
|+.|||.-.. ...|.+++.+.|+|..-.|..+ .+-|.+||....+++++++++.|.+.
T Consensus 252 ~~eNl~Rv~p~~l~a~id~~~~~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 252 FVENLPRVLPEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred hhhhChhhcCccceEEEcCCCCCCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
No 267
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=40.28 E-value=1.3e+02 Score=21.46 Aligned_cols=29 Identities=17% Similarity=0.042 Sum_probs=22.4
Q ss_pred EEecCCccEEEEEEcCHHHHHHHHHHhcC
Q 026659 141 VFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (235)
Q Consensus 141 ~~~~~~~~~~fV~f~~~~~A~~a~~~l~g 169 (235)
+..+.-.||.||+....+++..++..+.+
T Consensus 40 ~vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 40 LAPPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 33444678999999988888888877654
No 268
>PRK02302 hypothetical protein; Provisional
Probab=40.19 E-value=83 Score=20.25 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=28.1
Q ss_pred HHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCc
Q 026659 26 LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (235)
Q Consensus 26 ~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 69 (235)
-..+||.|..+.-. ..|+ |.|-+.++|+..++.|....
T Consensus 22 ~LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 34589999887543 3455 55889999999999887653
No 269
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=40.06 E-value=73 Score=18.24 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=39.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHH----HHHHHHHH
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYD----DMKYAIRK 166 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~----~A~~a~~~ 166 (235)
++.|.|+.-.-....+...+.....|..+.+....+ .+-|.|.... +..+++.+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~--~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK--TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC--EEEEEEecCCCCHHHHHHHHHH
Confidence 466777777777889999999999998887766554 7888888653 44445443
No 270
>PF15063 TC1: Thyroid cancer protein 1
Probab=39.77 E-value=22 Score=21.96 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=21.1
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCc
Q 026659 112 VLVTGLPSSASWQDLKDHMRRAGDV 136 (235)
Q Consensus 112 l~v~nl~~~~t~~~l~~~f~~~g~v 136 (235)
--+.||-.+++...|+.+|..-|+.
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccch
Confidence 3456788899999999999999864
No 271
>PRK02886 hypothetical protein; Provisional
Probab=38.54 E-value=92 Score=19.95 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=35.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 70 (235)
+.+-.||+..+-. ..-+.+||.|..+.-. ..|+ |.|-+.++|+..++.|....|
T Consensus 5 R~glIVyl~~~k~-------~r~LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 5 RQGIIVWLHSLKQ-------AKQLRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred eeEEEEEEeecHh-------HHHHhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 3444566655432 1334589999887543 3455 558899999999998876543
No 272
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=37.99 E-value=69 Score=19.02 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=31.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceE-EEEEecCCccEEE-EEEcCHHHHHHHHHHhc
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGMTGI-VDYTSYDDMKYAIRKLD 168 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~~~~~~~~~~f-V~f~~~~~A~~a~~~l~ 168 (235)
.+.|.|......-..+.+..-+...|.-.. ........-...+ -.|.+.++|..++..|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 456677665554444444444444453322 2222222222333 37899999999998887
No 273
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=37.22 E-value=1.2e+02 Score=19.67 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=24.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEE
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDL 38 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~ 38 (235)
...|+-.++..++..||++.|+. || +|..|..
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT 53 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNT 53 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEE
Confidence 34566678889999999999987 66 6666665
No 274
>PRK11901 hypothetical protein; Reviewed
Probab=36.98 E-value=1.4e+02 Score=24.30 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=37.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC-Cc--cEEE--EEEcCHHHHHHHHHHhcCCe
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-GG--MTGI--VDYTSYDDMKYAIRKLDRSE 171 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~--~~~f--V~f~~~~~A~~a~~~l~g~~ 171 (235)
...++|.|..+ ..++.|..|..+++ +..+.+..-. ++ -|.. =.|.+.++|..|+..|-...
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 45567777654 44777888877765 2333333222 22 2433 47899999999998875544
No 275
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.56 E-value=54 Score=19.93 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.7
Q ss_pred CeEEEEecCHHHHHHHHHhcCCCcc
Q 026659 46 GYAFLEFEDYRDAEDAIRGRDGYNF 70 (235)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~g~~~ 70 (235)
.+++|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4689999999999999987776544
No 276
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=36.53 E-value=20 Score=29.85 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHHhh--cCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHH
Q 026659 6 SRTLYVGNLPGDTRMR--------EVEDLFYK--YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~--------~l~~~F~~--~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
.+.+|+.++......+ ++...|.. .+++..+.+.. ....+|..|++|.....|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567777777765555 89999998 56777777733 45678889999999999999864
No 277
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.49 E-value=7 Score=32.77 Aligned_cols=75 Identities=8% Similarity=-0.127 Sum_probs=52.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+..-|+..+|...+++++.-+|..||.|..+.+.. .+...-.+||.-.. .+|..++..+....+.|..+.+.++.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45567888999999999999999999998888732 34445567776553 34445555455556666666666654
No 278
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=34.81 E-value=27 Score=21.14 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.1
Q ss_pred CCCeEEEcCCCCCCCHHH
Q 026659 5 SSRTLYVGNLPGDTRMRE 22 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~ 22 (235)
.++++|||+||...-.+.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 578999999998765544
No 279
>PF14893 PNMA: PNMA
Probab=32.82 E-value=35 Score=27.92 Aligned_cols=50 Identities=14% Similarity=0.316 Sum_probs=31.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHh----cCCceEE--EEEecCCccEEEEEEcCHHH
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRR----AGDVCFS--QVFRDRGGMTGIVDYTSYDD 159 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~----~g~v~~~--~~~~~~~~~~~fV~f~~~~~ 159 (235)
..|.|.+||.++++.+|++.++. .|...-. .+.++.+..-|+|+|...-+
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 46899999999999999998774 3332211 11222333467777765443
No 280
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=32.59 E-value=77 Score=17.99 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGP 32 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~ 32 (235)
..+++.+.....+.++|.+++..+|-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46778887768899999999999985
No 281
>PRK11901 hypothetical protein; Reviewed
Probab=32.36 E-value=1.6e+02 Score=24.06 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=37.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCC-CCeE---EEEecCHHHHHHHHHhcCCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRP-PGYA---FLEFEDYRDAEDAIRGRDGY 68 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~-~g~a---fV~f~~~~~a~~a~~~l~g~ 68 (235)
...+|.+..+ -.++.|..|..+++ +..++++.+... +.+- |=.|.+.++|..|+..|-..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3456666654 45777888887776 455666443221 2222 22468999999999988653
No 282
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=31.77 E-value=79 Score=24.94 Aligned_cols=30 Identities=23% Similarity=0.096 Sum_probs=23.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDI 36 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i 36 (235)
-...|+|||+++|-.-|..++...-.+...
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 356799999999999999999776555343
No 283
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.79 E-value=1.2e+02 Score=17.76 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=28.9
Q ss_pred CHHHHHHHHhhcC-CeeEEEEecCC-CCCCeEEEEecCHHHHHHHHHhc
Q 026659 19 RMREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDYRDAEDAIRGR 65 (235)
Q Consensus 19 t~~~l~~~F~~~G-~i~~i~~~~~~-~~~g~afV~f~~~~~a~~a~~~l 65 (235)
.-.+|..+|..+| .|..+...... ...+...+.+...++.+.+++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 4567888898888 67777653321 12455567776555555555544
No 284
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=30.71 E-value=1.6e+02 Score=19.21 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHh-------hcC-CeeEEEE--------ecCCCCCC-eEEEEecCHHHHHHHHH
Q 026659 14 LPGDTRMREVEDLFY-------KYG-PIVDIDL--------KIPPRPPG-YAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 14 l~~~~t~~~l~~~F~-------~~G-~i~~i~~--------~~~~~~~g-~afV~f~~~~~a~~a~~ 63 (235)
|.++++++++..+.+ ..| .|..+.- ...+...| |.++.|.-..++.+.++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 456777777666554 433 6665543 12344455 67888887767666664
No 285
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=30.61 E-value=62 Score=22.68 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=27.5
Q ss_pred EEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecC
Q 026659 9 LYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIP 41 (235)
Q Consensus 9 l~v~nl~~~-~t~~~l~~~F~~~G~i~~i~~~~~ 41 (235)
|-|.|||.. .+++-|..+.+.+|++..+.....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 556799998 688889999999999999988543
No 286
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=30.07 E-value=1.4e+02 Score=19.13 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=32.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEec-CC----CCC--------CeEEEEecCHHH
Q 026659 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKI-PP----RPP--------GYAFLEFEDYRD 57 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~-~~----~~~--------g~afV~f~~~~~ 57 (235)
..|+-.++..++..||++.++. || .|..|.... .| ... --|+|++...+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 3455567889999999999986 56 566665522 11 111 248888876643
No 287
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=29.72 E-value=1.1e+02 Score=22.35 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEEecCCccEE-EEEEcC
Q 026659 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTG-IVDYTS 156 (235)
Q Consensus 119 ~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~-fV~f~~ 156 (235)
..+|-++|.++|.+|+.-..+ ....++.+. .|.|++
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~--e~~~~~eFD~~i~Fed 143 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHC--EEMDNGEFDYLIYFED 143 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEE--EeecCCCCCEEEEecC
Confidence 578999999999999984333 333333343 355553
No 288
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=29.19 E-value=1.7e+02 Score=25.67 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHHh----hcCCeeEEEEecC--CCCCCeEEEEecCHHHHHHHHHhcC
Q 026659 20 MREVEDLFY----KYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRD 66 (235)
Q Consensus 20 ~~~l~~~F~----~~G~i~~i~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~ 66 (235)
.-+|..+|- .+|.|..+.+... .......++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 446777775 6788999888432 3334677889999999999987654
No 289
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=29.09 E-value=19 Score=21.72 Aligned_cols=36 Identities=3% Similarity=0.131 Sum_probs=25.5
Q ss_pred HHHHHHHHhcC---CceEEEEEecCCccEEEEEEcCHHHHHHHHHHhc
Q 026659 124 QDLKDHMRRAG---DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (235)
Q Consensus 124 ~~l~~~f~~~g---~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~ 168 (235)
+++++.|..+. .++.. .+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL---------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL---------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh---------hhccCCCCHHHHHHHHHHhh
Confidence 57777776543 33322 68999999999998876653
No 290
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=28.98 E-value=1.8e+02 Score=19.37 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCeeEEEE-ecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 22 EVEDLFYKYGPIVDIDL-KIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 22 ~l~~~F~~~G~i~~i~~-~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
+|..+....| |.+-.| .......-|||+++.|.+..-+++.
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 5777888888 555444 3334567899999996666555553
No 291
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.21 E-value=1.5e+02 Score=18.10 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhc
Q 026659 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (235)
Q Consensus 124 ~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~ 168 (235)
.++.+.+..+| +....+.....+++.|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45666777788 444444444335588888889998888877663
No 292
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=28.07 E-value=51 Score=28.70 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=36.4
Q ss_pred CCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCC
Q 026659 44 PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (235)
Q Consensus 44 ~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~ 85 (235)
-..|+++.|.++..+.+|+..++|..+.+..+.+..+.....
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVG 103 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccc
Confidence 357999999999999999999999999998888888765443
No 293
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=27.94 E-value=1.2e+02 Score=17.21 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhhcC-CeeEEEEecCC-CCCCeEEEEecC
Q 026659 17 DTRMREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFED 54 (235)
Q Consensus 17 ~~t~~~l~~~F~~~G-~i~~i~~~~~~-~~~g~afV~f~~ 54 (235)
.-.-.+|..+|.++| .|..+...... .......+.+.+
T Consensus 10 ~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 10 PGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred CCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 345677888999887 78777774432 223334444444
No 294
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=27.53 E-value=2.3e+02 Score=20.17 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=37.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCc-cEEEEEEcCHHHHHHHHH
Q 026659 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIR 165 (235)
Q Consensus 112 l~v~nl~~~~t~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fV~f~~~~~A~~a~~ 165 (235)
-|+-..+...+..+|.+.++. |+ .|..+..+.-+.+ .-|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 444456788899999998886 65 5666666554443 479999988777665543
No 295
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=27.35 E-value=1.8e+02 Score=21.91 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=37.2
Q ss_pred CCHHHHHHHHhhcCC---eeEEEEecCCCCCCeEEEEe-cCHHHHHHHHHhcCCCccC
Q 026659 18 TRMREVEDLFYKYGP---IVDIDLKIPPRPPGYAFLEF-EDYRDAEDAIRGRDGYNFD 71 (235)
Q Consensus 18 ~t~~~l~~~F~~~G~---i~~i~~~~~~~~~g~afV~f-~~~~~a~~a~~~l~g~~~~ 71 (235)
.+.+++.+....+|. |....+...|+.++ +-|.+ .++++|..+...|-|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~-GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKA-GGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTT-TCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccC-CceeecCCHHHHHHHHHHHhCCceE
Confidence 477888888887773 44444555566666 44544 5889999999989888775
No 296
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=27.29 E-value=14 Score=25.35 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=6.7
Q ss_pred CCCCCCCCCccCCC
Q 026659 220 RSWSYSPRSRRCHS 233 (235)
Q Consensus 220 r~rsr~~r~r~~~s 233 (235)
+.|++.++.-||+|
T Consensus 40 ReRsRE~kiissls 53 (146)
T PF11671_consen 40 RERSRERKIISSLS 53 (146)
T ss_pred hhhhcccccccccc
Confidence 44445555555544
No 297
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.89 E-value=65 Score=26.04 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.4
Q ss_pred EEEEEcCHHHHHHHHHHhcCCee
Q 026659 150 GIVDYTSYDDMKYAIRKLDRSEF 172 (235)
Q Consensus 150 ~fV~f~~~~~A~~a~~~l~g~~~ 172 (235)
|||+|.+..+|..|.+.+.....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~ 23 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP 23 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC
Confidence 79999999999999986666554
No 298
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=26.23 E-value=2.8e+02 Score=20.79 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=38.2
Q ss_pred CCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC-CccC--CceEEEE
Q 026659 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFD--GYRLRVE 78 (235)
Q Consensus 18 ~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~--g~~i~v~ 78 (235)
.+.++..++...++.-. +-++.++-..|-+-+...+.++|..|+..+-. ..+. +..+.|+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 36777888888876433 44555665555556667999999999976643 3332 3444444
No 299
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=24.77 E-value=61 Score=25.44 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFY 28 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~ 28 (235)
...++|+|||+.++..-|.+++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45689999999999999999987
No 300
>PHA01632 hypothetical protein
Probab=24.27 E-value=99 Score=17.81 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=16.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh
Q 026659 9 LYVGNLPGDTRMREVEDLFYK 29 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~ 29 (235)
|.|-.+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445688999999999887754
No 301
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.03 E-value=2.1e+02 Score=18.38 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=27.8
Q ss_pred CHHHHHHHHhhcC-CeeEEEEecCCC--CCCeEEEEecC--HHHHHHHHHhcC
Q 026659 19 RMREVEDLFYKYG-PIVDIDLKIPPR--PPGYAFLEFED--YRDAEDAIRGRD 66 (235)
Q Consensus 19 t~~~l~~~F~~~G-~i~~i~~~~~~~--~~g~afV~f~~--~~~a~~a~~~l~ 66 (235)
.-.++...|..+| .+..|.-..... ..-+-||++.- .+....|+..|.
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 4556777888887 555555533322 22356788873 344456666554
No 302
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=23.81 E-value=79 Score=24.45 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=27.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEE
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~ 141 (235)
.++|+-|+|...+++.|..+..+.|.+..+.+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 47999999999999999999999986655443
No 303
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=23.21 E-value=1.4e+02 Score=19.54 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=26.3
Q ss_pred EEEcCCCCCCCHHHHHH---HHhhcCCeeEEEE-----ecCCCCCCeEEEEec
Q 026659 9 LYVGNLPGDTRMREVED---LFYKYGPIVDIDL-----KIPPRPPGYAFLEFE 53 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~---~F~~~G~i~~i~~-----~~~~~~~g~afV~f~ 53 (235)
.|+.|||.++.+.++.. .+..+++-..|.. .....+.|++.+.+.
T Consensus 13 a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 13 AFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 58889999988877654 4445554445544 223455666555443
No 304
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=22.56 E-value=1e+02 Score=23.93 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=20.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcC
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYG 31 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G 31 (235)
-+.|+|||++++...|.+++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 378999999999999999987443
No 305
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.16 E-value=1.8e+02 Score=16.92 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhcC-CceEEEEEecCCccEEEEEEcCHHHHHHHHH
Q 026659 122 SWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 165 (235)
Q Consensus 122 t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~ 165 (235)
.-.++.++|.+.| .|.++........+..-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 4567788888777 6777766544333444456666666666664
No 306
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.01 E-value=2e+02 Score=17.40 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=29.9
Q ss_pred CCHHHHHHHHhhcC-CeeEEEEecCC--CCCCeEEEEec-CHHHHHHHHHhcCC
Q 026659 18 TRMREVEDLFYKYG-PIVDIDLKIPP--RPPGYAFLEFE-DYRDAEDAIRGRDG 67 (235)
Q Consensus 18 ~t~~~l~~~F~~~G-~i~~i~~~~~~--~~~g~afV~f~-~~~~a~~a~~~l~g 67 (235)
-.-.++.+.|..+| .+..|.=.... ...-+-||++. +.+..++|+..|..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 34566788888887 55555443222 22335678877 55556677776654
No 307
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=21.97 E-value=92 Score=21.30 Aligned_cols=18 Identities=28% Similarity=0.682 Sum_probs=15.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHh
Q 026659 8 TLYVGNLPGDTRMREVEDLFY 28 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~ 28 (235)
+|||||.+ ++++|.+.|.
T Consensus 3 siWiG~f~---s~~el~~Y~e 20 (122)
T PF14112_consen 3 SIWIGNFK---SEDELEEYFE 20 (122)
T ss_pred EEEEecCC---CHHHHHHHhC
Confidence 69999885 8889988885
No 308
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=21.97 E-value=1.7e+02 Score=26.53 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHhhcCCee-----EEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 17 DTRMREVEDLFYKYGPIV-----DIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 17 ~~t~~~l~~~F~~~G~i~-----~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+++.+|..++..-+.|. .|.+. ..|.||+... ..|...+..|++..+.|+.|.|+.+.
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 489999998887766544 35554 5789999764 55788888899999999999999875
No 309
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=21.76 E-value=2e+02 Score=17.48 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=30.1
Q ss_pred CHHHHHHHHhhcC-CeeEEEEecCCCCC--CeEEEEecC---HHHHHHHHHhcCC
Q 026659 19 RMREVEDLFYKYG-PIVDIDLKIPPRPP--GYAFLEFED---YRDAEDAIRGRDG 67 (235)
Q Consensus 19 t~~~l~~~F~~~G-~i~~i~~~~~~~~~--g~afV~f~~---~~~a~~a~~~l~g 67 (235)
.-.++.+.|.++| .|..+.....+... -..||++.- .+....+++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4566788898987 67777654332222 245566662 5666677776654
No 310
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=21.48 E-value=66 Score=19.14 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=9.6
Q ss_pred HHHHHHHHhhcCCeeE
Q 026659 20 MREVEDLFYKYGPIVD 35 (235)
Q Consensus 20 ~~~l~~~F~~~G~i~~ 35 (235)
-=|+.+++.+||.+..
T Consensus 4 lyDVqQLLK~fG~~IY 19 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIY 19 (62)
T ss_dssp HHHHHHHHHTTS----
T ss_pred HHHHHHHHHHCCEEEE
Confidence 3478889999986554
No 311
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.51 E-value=1.2e+02 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=19.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKY 30 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~ 30 (235)
.+.|+|||+.++...|..++...
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~ 125 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHR 125 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcC
Confidence 47789999999999988888653
No 312
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.31 E-value=1.8e+02 Score=16.40 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcC-CeeEEEEecCC-CCCCeEEEEecCHHHHHHHHH
Q 026659 20 MREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 20 ~~~l~~~F~~~G-~i~~i~~~~~~-~~~g~afV~f~~~~~a~~a~~ 63 (235)
-.+|..+|.++| .|..+...... .......+...+.+.+.+++.
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 345777788887 77766653332 123333444456555555555
No 313
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=20.21 E-value=3.1e+02 Score=18.98 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=39.3
Q ss_pred eEEEeCCCCC---CCHHHHHHHHHhcC-CceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 111 RVLVTGLPSS---ASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 111 ~l~v~nl~~~---~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
.|.|.+.... .+...+.+....-| .++.+....+ ...|.|.+.++-.+|.+.|....-++
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~----~~~irf~~~~~Ql~Ak~vL~~~L~~~ 100 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND----SLLIRFDSPEQSAAAKEVLDRTLPHG 100 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC----EEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 4555544222 45677778888777 3444444333 68899999999888888777665443
Done!