Query 026659
Match_columns 235
No_of_seqs 233 out of 2286
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 4.9E-37 1.7E-41 232.7 17.1 164 4-189 13-181 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 2.6E-35 8.8E-40 221.3 21.3 179 4-184 2-202 (205)
3 3md3_A Nuclear and cytoplasmic 100.0 5E-35 1.7E-39 213.1 20.3 159 7-187 1-165 (166)
4 1fxl_A Paraneoplastic encephal 100.0 8.2E-35 2.8E-39 212.2 19.7 152 5-176 1-159 (167)
5 2yh0_A Splicing factor U2AF 65 100.0 6E-34 2E-38 213.3 23.3 179 4-190 2-195 (198)
6 1l3k_A Heterogeneous nuclear r 100.0 1.2E-34 4.1E-39 216.8 19.3 168 4-191 11-185 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 6.4E-34 2.2E-38 224.5 24.2 180 3-187 6-281 (282)
8 1b7f_A Protein (SXL-lethal pro 100.0 3.9E-34 1.3E-38 208.9 21.0 150 5-174 2-158 (168)
9 2qfj_A FBP-interacting repress 100.0 8E-34 2.7E-38 215.5 20.7 173 5-190 27-206 (216)
10 2adc_A Polypyrimidine tract-bi 100.0 1.9E-33 6.6E-38 215.2 21.7 178 4-188 32-227 (229)
11 1fje_B Nucleolin RBD12, protei 100.0 8.3E-35 2.8E-39 214.0 12.1 163 3-189 10-174 (175)
12 3nmr_A Cugbp ELAV-like family 100.0 1.3E-33 4.4E-38 207.4 18.3 161 5-185 2-173 (175)
13 1qm9_A Polypyrimidine tract-bi 100.0 2.6E-33 9E-38 209.9 19.6 175 6-187 3-195 (198)
14 2g4b_A Splicing factor U2AF 65 100.0 7.3E-33 2.5E-37 202.9 20.0 155 4-186 2-171 (172)
15 2cjk_A Nuclear polyadenylated 100.0 8.6E-34 2.9E-38 206.9 12.7 159 4-189 1-166 (167)
16 3smz_A Protein raver-1, ribonu 100.0 9.8E-32 3.3E-36 212.2 20.0 166 4-190 93-265 (284)
17 2ghp_A U4/U6 snRNA-associated 100.0 6.7E-32 2.3E-36 214.0 18.9 167 5-189 116-291 (292)
18 3sde_A Paraspeckle component 1 100.0 2.2E-31 7.4E-36 207.6 19.1 157 4-189 20-179 (261)
19 3smz_A Protein raver-1, ribonu 100.0 7.7E-31 2.6E-35 207.1 21.0 152 4-189 20-175 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 6.1E-31 2.1E-35 208.4 18.5 155 4-190 39-198 (292)
21 4f25_A Polyadenylate-binding p 99.9 1.2E-25 4E-30 153.5 9.4 108 6-125 5-113 (115)
22 3lqv_A PRE-mRNA branch site pr 99.9 7.6E-24 2.6E-28 144.6 9.5 105 3-135 5-109 (115)
23 4fxv_A ELAV-like protein 1; RN 99.9 1.2E-23 4.3E-28 139.3 9.6 78 5-82 18-98 (99)
24 2kn4_A Immunoglobulin G-bindin 99.9 1.7E-22 5.9E-27 145.6 13.5 139 42-191 10-152 (158)
25 2i2y_A Fusion protein consists 99.9 2.8E-22 9.4E-27 143.3 12.3 139 41-189 9-148 (150)
26 1x4a_A Splicing factor, argini 99.9 5.6E-22 1.9E-26 134.0 11.7 83 3-85 19-101 (109)
27 2hvz_A Splicing factor, argini 99.9 2.7E-22 9.3E-27 133.7 10.0 100 7-118 1-100 (101)
28 2fy1_A RNA-binding motif prote 99.9 1.6E-21 5.6E-26 133.0 13.1 85 1-85 2-88 (116)
29 3s8s_A Histone-lysine N-methyl 99.9 4.7E-22 1.6E-26 134.2 9.9 81 3-83 3-86 (110)
30 1whw_A Hypothetical protein ri 99.9 2E-21 6.9E-26 129.0 12.6 84 3-86 5-91 (99)
31 1sjq_A Polypyrimidine tract-bi 99.9 5.6E-22 1.9E-26 131.2 9.7 81 3-86 13-95 (105)
32 2lxi_A RNA-binding protein 10; 99.9 2.4E-22 8.2E-27 131.1 7.7 80 6-85 1-85 (91)
33 2a3j_A U1 small nuclear ribonu 99.9 1.4E-21 5E-26 134.7 11.3 82 3-84 26-111 (127)
34 2cpf_A RNA binding motif prote 99.9 1E-21 3.5E-26 130.1 10.1 84 3-86 2-91 (98)
35 2dnz_A Probable RNA-binding pr 99.9 4.7E-21 1.6E-25 126.2 13.1 84 3-86 2-88 (95)
36 3beg_B Splicing factor, argini 99.9 7.7E-22 2.6E-26 134.4 9.5 80 106-188 13-93 (115)
37 2wbr_A GW182, gawky, LD47780P; 99.9 1.1E-21 3.7E-26 124.0 9.2 74 5-81 6-79 (89)
38 2x1f_A MRNA 3'-END-processing 99.9 2.1E-21 7.1E-26 128.1 10.7 80 5-84 1-83 (96)
39 2dgo_A Cytotoxic granule-assoc 99.9 4.8E-21 1.6E-25 130.7 12.6 84 4-87 13-99 (115)
40 2dnm_A SRP46 splicing factor; 99.9 3.1E-21 1.1E-25 129.0 11.3 83 4-86 11-96 (103)
41 2cqi_A Nucleolysin TIAR; RNA r 99.9 5.8E-21 2E-25 127.7 12.6 84 3-86 12-96 (103)
42 2lkz_A RNA-binding protein 5; 99.9 8E-22 2.7E-26 129.2 8.1 79 4-82 7-94 (95)
43 2dgs_A DAZ-associated protein 99.9 5.9E-21 2E-25 126.7 12.4 84 3-87 7-93 (99)
44 3r27_A HnRNP L, heterogeneous 99.9 2.5E-21 8.4E-26 126.9 10.3 78 4-84 19-98 (100)
45 1x5t_A Splicing factor 3B subu 99.9 3.2E-21 1.1E-25 127.3 11.0 83 3-85 2-88 (96)
46 2dgx_A KIAA0430 protein; RRM d 99.9 2.9E-21 1E-25 127.4 10.7 81 4-84 7-91 (96)
47 2d9p_A Polyadenylate-binding p 99.9 3.1E-21 1.1E-25 129.0 10.9 84 3-86 12-96 (103)
48 1nu4_A U1A RNA binding domain; 99.9 7.4E-22 2.5E-26 130.6 7.8 84 1-84 3-90 (97)
49 2dgv_A HnRNP M, heterogeneous 99.9 2.5E-21 8.4E-26 126.8 10.2 83 3-85 5-88 (92)
50 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.7E-21 9.1E-26 129.1 10.3 84 4-87 10-96 (102)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.4E-21 8.3E-26 124.9 9.7 79 3-81 4-85 (85)
52 1x5u_A Splicing factor 3B subu 99.9 5.1E-21 1.7E-25 128.4 11.6 82 4-85 13-97 (105)
53 3md1_A Nuclear and cytoplasmic 99.9 2.8E-21 9.5E-26 124.1 9.8 79 6-84 1-82 (83)
54 2ad9_A Polypyrimidine tract-bi 99.9 4.3E-21 1.5E-25 130.1 11.0 82 3-87 28-111 (119)
55 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.9E-21 6.5E-26 126.0 8.8 80 4-83 4-86 (87)
56 3pgw_S U1-70K; protein-RNA com 99.9 2.1E-20 7.3E-25 154.7 17.2 84 4-87 100-186 (437)
57 1x5s_A Cold-inducible RNA-bind 99.9 4.5E-21 1.5E-25 128.0 10.8 82 4-85 10-94 (102)
58 2dgu_A Heterogeneous nuclear r 99.9 1.2E-20 4.1E-25 126.1 12.6 79 4-87 9-87 (103)
59 2cq3_A RNA-binding protein 9; 99.9 1.3E-20 4.5E-25 125.9 12.8 83 4-86 13-96 (103)
60 2cqd_A RNA-binding region cont 99.9 2E-20 6.8E-25 127.8 13.9 82 3-85 14-98 (116)
61 1x4d_A Matrin 3; structural ge 99.9 1.8E-21 6.1E-26 128.8 8.2 80 3-85 12-94 (102)
62 2div_A TRNA selenocysteine ass 99.9 3E-21 1E-25 128.2 9.4 83 2-84 5-95 (99)
63 2cq0_A Eukaryotic translation 99.9 2.9E-21 9.9E-26 129.1 9.3 83 4-86 13-98 (103)
64 2do0_A HnRNP M, heterogeneous 99.9 1.2E-20 4.2E-25 128.4 12.6 83 3-85 12-96 (114)
65 2cph_A RNA binding motif prote 99.9 1E-20 3.5E-25 127.3 11.9 82 4-85 13-99 (107)
66 2do4_A Squamous cell carcinoma 99.9 5.9E-21 2E-25 126.9 10.5 81 4-84 15-97 (100)
67 2e5h_A Zinc finger CCHC-type a 99.9 6.7E-21 2.3E-25 125.2 10.6 78 4-81 14-94 (94)
68 2cpz_A CUG triplet repeat RNA- 99.9 5.1E-21 1.7E-25 130.5 10.3 83 4-86 23-108 (115)
69 2cq1_A PTB-like protein L; RRM 99.9 9.7E-21 3.3E-25 125.4 11.2 80 3-85 12-93 (101)
70 2dnq_A RNA-binding protein 4B; 99.8 1.5E-20 5E-25 122.5 11.8 79 3-86 5-83 (90)
71 4a8x_A RNA-binding protein wit 99.8 6.9E-21 2.3E-25 123.6 10.1 81 4-84 2-86 (88)
72 2dgp_A Bruno-like 4, RNA bindi 99.8 1.3E-20 4.4E-25 126.6 11.5 83 3-85 10-98 (106)
73 2dnh_A Bruno-like 5, RNA bindi 99.8 1.1E-20 3.6E-25 126.8 10.9 83 4-86 13-100 (105)
74 2dgt_A RNA-binding protein 30; 99.8 1.6E-20 5.6E-25 122.8 11.5 79 3-86 7-85 (92)
75 1x4c_A Splicing factor, argini 99.8 4.7E-20 1.6E-24 124.2 14.0 82 104-188 10-92 (108)
76 1wi8_A EIF-4B, eukaryotic tran 99.8 1.1E-20 3.8E-25 126.5 10.7 81 3-85 12-96 (104)
77 1p27_B RNA-binding protein 8A; 99.8 5.6E-21 1.9E-25 128.4 9.3 81 4-84 21-104 (106)
78 1wex_A Hypothetical protein (r 99.8 1.1E-20 3.7E-25 125.9 10.5 79 4-85 13-93 (104)
79 1x4h_A RNA-binding protein 28; 99.8 2E-20 6.8E-25 126.8 12.0 83 4-86 13-104 (111)
80 1x4c_A Splicing factor, argini 99.8 2.8E-20 9.6E-25 125.3 12.6 78 4-85 13-95 (108)
81 1why_A Hypothetical protein ri 99.8 1.8E-20 6.1E-25 123.9 11.1 78 4-84 15-94 (97)
82 3p5t_L Cleavage and polyadenyl 99.8 1.2E-21 4.1E-26 127.7 5.2 79 7-85 2-85 (90)
83 2dnp_A RNA-binding protein 14; 99.8 2.2E-20 7.5E-25 121.7 11.1 78 3-85 6-83 (90)
84 2ywk_A Putative RNA-binding pr 99.8 7.5E-21 2.6E-25 125.2 8.9 80 3-82 13-94 (95)
85 1oo0_B CG8781-PA, drosophila Y 99.8 1E-20 3.5E-25 128.0 9.7 81 4-84 24-107 (110)
86 2jrs_A RNA-binding protein 39; 99.8 9.4E-21 3.2E-25 127.5 9.4 81 3-83 23-106 (108)
87 2kxn_B Transformer-2 protein h 99.8 8.2E-21 2.8E-25 131.8 9.3 81 4-84 44-127 (129)
88 1s79_A Lupus LA protein; RRM, 99.8 1.1E-20 3.9E-25 125.7 9.5 78 4-82 9-88 (103)
89 2jvr_A Nucleolar protein 3; RN 99.8 1E-20 3.5E-25 127.3 9.4 79 4-83 26-105 (111)
90 2cqc_A Arginine/serine-rich sp 99.8 8E-21 2.7E-25 125.1 8.7 79 4-82 13-94 (95)
91 3ns6_A Eukaryotic translation 99.8 2.4E-21 8.1E-26 128.7 6.1 79 4-82 4-92 (100)
92 2err_A Ataxin-2-binding protei 99.8 1.4E-20 4.7E-25 127.0 9.7 80 4-83 27-107 (109)
93 2cpe_A RNA-binding protein EWS 99.8 1.9E-20 6.6E-25 127.3 10.5 82 4-85 13-105 (113)
94 2dng_A Eukaryotic translation 99.8 2.1E-20 7.3E-25 124.9 10.5 82 3-86 12-96 (103)
95 2dis_A Unnamed protein product 99.8 5.5E-20 1.9E-24 124.2 12.6 83 3-85 5-94 (109)
96 1x4g_A Nucleolysin TIAR; struc 99.8 4.2E-20 1.4E-24 124.7 11.8 79 4-85 23-101 (109)
97 2khc_A Testis-specific RNP-typ 99.8 1.1E-20 3.8E-25 129.4 9.1 79 3-81 37-118 (118)
98 2la6_A RNA-binding protein FUS 99.8 1.2E-20 4.1E-25 125.2 8.8 78 4-81 11-99 (99)
99 3ex7_B RNA-binding protein 8A; 99.8 1.8E-20 6.3E-25 129.8 10.1 83 4-86 20-105 (126)
100 2nlw_A Eukaryotic translation 99.8 1.8E-20 6.1E-25 125.6 9.7 80 4-83 13-100 (105)
101 3ucg_A Polyadenylate-binding p 99.8 2.8E-20 9.7E-25 120.9 10.3 78 5-83 5-85 (89)
102 1x4f_A Matrin 3; structural ge 99.8 7.7E-21 2.6E-25 127.5 7.7 80 3-85 22-104 (112)
103 2cpi_A CCR4-NOT transcription 99.8 8.9E-21 3E-25 128.4 8.0 81 4-84 13-102 (111)
104 2xnq_A Nuclear polyadenylated 99.8 3.7E-20 1.2E-24 122.2 10.7 75 4-83 20-95 (97)
105 2krb_A Eukaryotic translation 99.8 9.1E-21 3.1E-25 121.0 7.6 72 6-77 1-80 (81)
106 2kvi_A Nuclear polyadenylated 99.8 1.8E-20 6.3E-25 123.5 9.2 78 3-85 7-85 (96)
107 2cpx_A Hypothetical protein FL 99.8 2.8E-20 9.7E-25 126.8 10.3 82 4-86 23-108 (115)
108 2dhg_A TRNA selenocysteine ass 99.8 3.1E-20 1E-24 124.4 10.2 83 3-85 6-92 (104)
109 3ulh_A THO complex subunit 4; 99.8 2.2E-20 7.5E-25 125.7 9.4 78 4-81 27-106 (107)
110 1u6f_A Tcubp1, RNA-binding pro 99.8 3.9E-20 1.3E-24 130.4 11.1 83 4-86 40-125 (139)
111 3s7r_A Heterogeneous nuclear r 99.8 2.8E-20 9.6E-25 120.4 9.4 77 3-80 8-87 (87)
112 2cpj_A Non-POU domain-containi 99.8 3.6E-20 1.2E-24 122.9 10.1 79 4-85 13-91 (99)
113 2rs2_A Musashi-1, RNA-binding 99.8 5.5E-20 1.9E-24 124.0 11.0 81 4-85 23-106 (109)
114 2jvo_A Nucleolar protein 3; nu 99.8 3.3E-20 1.1E-24 124.8 9.9 76 4-84 29-104 (108)
115 2cq2_A Hypothetical protein LO 99.8 4.3E-20 1.5E-24 123.9 10.1 80 2-84 21-107 (114)
116 1whx_A Hypothetical protein ri 99.8 3.4E-20 1.2E-24 125.4 9.6 78 4-84 8-85 (111)
117 2kt5_A RNA and export factor-b 99.8 7.7E-20 2.6E-24 126.3 11.6 84 4-87 33-118 (124)
118 2cpd_A Apobec-1 stimulating pr 99.8 1E-19 3.4E-24 120.7 11.7 77 4-85 13-91 (99)
119 2fc9_A NCL protein; structure 99.8 3.9E-20 1.3E-24 123.2 9.7 81 4-85 13-93 (101)
120 2ytc_A PRE-mRNA-splicing facto 99.8 4.5E-20 1.5E-24 118.9 9.6 75 4-81 10-85 (85)
121 2e5j_A Methenyltetrahydrofolat 99.8 3.4E-20 1.2E-24 122.5 9.2 78 5-84 18-95 (97)
122 2cqh_A IGF-II mRNA-binding pro 99.8 4.4E-20 1.5E-24 121.0 9.6 79 3-85 5-85 (93)
123 2mss_A Protein (musashi1); RNA 99.8 2.2E-20 7.6E-25 117.4 7.8 72 8-80 1-75 (75)
124 2la4_A Nuclear and cytoplasmic 99.8 2.8E-20 9.4E-25 123.9 8.5 76 4-82 25-100 (101)
125 2dh8_A DAZ-associated protein 99.8 1.8E-20 6E-25 125.7 7.5 83 3-86 13-98 (105)
126 3n9u_C Cleavage and polyadenyl 99.8 3.3E-20 1.1E-24 132.8 9.3 78 5-82 54-136 (156)
127 1x4e_A RNA binding motif, sing 99.8 6.7E-21 2.3E-25 122.8 4.9 79 3-81 2-83 (85)
128 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.6E-20 8.9E-25 123.7 7.9 78 4-83 17-98 (100)
129 1p1t_A Cleavage stimulation fa 99.8 3.1E-20 1.1E-24 124.3 8.2 80 5-84 7-89 (104)
130 2lea_A Serine/arginine-rich sp 99.8 3.3E-20 1.1E-24 129.8 8.5 82 4-85 45-129 (135)
131 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.2E-20 2.5E-24 131.5 10.5 82 4-85 37-121 (156)
132 2m2b_A RNA-binding protein 10; 99.8 2.6E-20 8.9E-25 129.9 7.7 82 3-85 20-110 (131)
133 2cqp_A RNA-binding protein 12; 99.8 1.8E-20 6.2E-25 124.1 6.5 80 4-83 13-95 (98)
134 1wf1_A RNA-binding protein RAL 99.8 8.9E-20 3E-24 123.3 10.0 76 5-85 26-102 (110)
135 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.2E-20 1.1E-24 117.3 7.3 73 7-80 1-76 (77)
136 2cq4_A RNA binding motif prote 99.8 6.9E-20 2.4E-24 124.7 9.0 78 5-83 24-104 (114)
137 2ek1_A RNA-binding protein 12; 99.8 1.5E-20 5.1E-25 123.8 5.5 78 4-81 13-93 (95)
138 2kn4_A Immunoglobulin G-bindin 99.8 1.4E-19 4.6E-24 130.4 11.0 81 5-85 69-152 (158)
139 1fjc_A Nucleolin RBD2, protein 99.8 2.3E-20 7.7E-25 123.2 6.2 79 4-84 14-92 (96)
140 1wg5_A Heterogeneous nuclear r 99.8 1.6E-19 5.4E-24 120.7 10.4 80 4-84 13-95 (104)
141 2ki2_A SS-DNA binding protein 99.8 1.6E-20 5.3E-25 122.4 5.3 78 7-85 2-82 (90)
142 2jwn_A Embryonic polyadenylate 99.8 1.2E-19 4.1E-24 125.3 10.0 79 5-84 35-116 (124)
143 2dgw_A Probable RNA-binding pr 99.8 1.2E-19 4.2E-24 118.4 9.5 79 4-84 8-88 (91)
144 1wg1_A KIAA1579 protein, homol 99.8 5.6E-20 1.9E-24 119.2 7.6 78 3-84 2-79 (88)
145 2fc8_A NCL protein; structure 99.8 7.3E-20 2.5E-24 122.1 8.2 82 4-85 13-94 (102)
146 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.6E-19 5.5E-24 127.4 10.3 77 4-80 61-140 (140)
147 2cqg_A TDP-43, TAR DNA-binding 99.8 3.2E-19 1.1E-23 119.2 11.1 81 4-86 13-96 (103)
148 2i2y_A Fusion protein consists 99.8 1.8E-19 6E-24 128.7 10.4 79 4-84 71-149 (150)
149 1x4b_A Heterogeneous nuclear r 99.8 2.6E-19 9E-24 122.2 10.8 81 5-86 26-109 (116)
150 3egn_A RNA-binding protein 40; 99.8 5.3E-20 1.8E-24 130.3 7.6 82 3-84 42-131 (143)
151 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-19 3.8E-24 131.7 9.2 82 4-85 70-154 (165)
152 1fj7_A Nucleolin RBD1, protein 99.8 2.4E-20 8.3E-25 124.2 5.1 81 4-85 15-97 (101)
153 2diu_A KIAA0430 protein; struc 99.8 2.7E-19 9.2E-24 114.1 9.6 75 4-85 6-86 (96)
154 1x5o_A RNA binding motif, sing 99.8 2E-19 6.7E-24 122.4 9.4 80 4-83 23-112 (114)
155 2e5g_A U6 snRNA-specific termi 99.8 4E-19 1.4E-23 116.6 10.5 79 4-85 6-84 (94)
156 3beg_B Splicing factor, argini 99.8 1.9E-19 6.6E-24 122.5 9.1 76 4-83 14-94 (115)
157 2cpy_A RNA-binding protein 12; 99.8 1.2E-19 4E-24 123.4 8.0 79 4-83 13-94 (114)
158 1x5p_A Negative elongation fac 99.8 7.2E-19 2.5E-23 116.1 11.3 77 4-85 13-89 (97)
159 1iqt_A AUF1, heterogeneous nuc 99.8 1.1E-19 3.7E-24 114.2 7.0 72 8-80 1-75 (75)
160 1wez_A HnRNP H', FTP-3, hetero 99.8 1.8E-19 6E-24 119.9 8.2 79 4-84 13-93 (102)
161 2e44_A Insulin-like growth fac 99.8 4.8E-19 1.6E-23 116.7 9.9 79 5-84 14-93 (96)
162 3pgw_S U1-70K; protein-RNA com 99.8 4.3E-19 1.5E-23 146.9 11.6 164 13-188 4-181 (437)
163 2f3j_A RNA and export factor b 99.8 5E-19 1.7E-23 129.4 10.5 81 4-84 86-168 (177)
164 2db1_A Heterogeneous nuclear r 99.8 1.3E-19 4.5E-24 123.9 6.9 78 4-82 15-97 (118)
165 1rk8_A CG8781-PA, CG8781-PA pr 99.8 8.2E-19 2.8E-23 127.1 11.5 136 50-190 11-153 (165)
166 1sjr_A Polypyrimidine tract-bi 99.8 7.6E-19 2.6E-23 124.9 10.4 78 7-85 47-126 (164)
167 2hgl_A HNRPF protein, heteroge 99.8 1.8E-19 6.3E-24 125.6 6.9 78 4-82 42-124 (136)
168 1wel_A RNA-binding protein 12; 99.8 2.7E-19 9.1E-24 123.5 7.4 78 4-82 23-103 (124)
169 3q2s_C Cleavage and polyadenyl 99.8 3.5E-19 1.2E-23 135.5 8.6 78 5-82 67-149 (229)
170 2lmi_A GRSF-1, G-rich sequence 99.8 2.1E-19 7.2E-24 120.8 6.5 79 3-82 8-91 (107)
171 2dnn_A RNA-binding protein 12; 99.8 8.3E-19 2.8E-23 117.7 9.0 75 6-82 16-92 (109)
172 3zzy_A Polypyrimidine tract-bi 99.8 9.8E-19 3.3E-23 119.9 9.5 77 7-85 29-108 (130)
173 2hzc_A Splicing factor U2AF 65 99.8 1E-18 3.5E-23 113.0 8.7 73 3-79 3-86 (87)
174 2jvr_A Nucleolar protein 3; RN 99.8 1.1E-18 3.8E-23 117.3 9.2 82 105-190 24-106 (111)
175 2dha_A FLJ20171 protein; RRM d 99.8 1.8E-19 6.1E-24 123.4 5.0 78 4-82 21-104 (123)
176 2lea_A Serine/arginine-rich sp 99.8 6.1E-19 2.1E-23 123.3 7.8 121 45-190 4-128 (135)
177 3d2w_A TAR DNA-binding protein 99.8 1.7E-18 5.8E-23 112.2 9.3 75 4-84 9-85 (89)
178 2e5i_A Heterogeneous nuclear r 99.8 2.4E-18 8.3E-23 117.5 10.4 74 9-85 28-104 (124)
179 1wf0_A TDP-43, TAR DNA-binding 99.8 9.3E-19 3.2E-23 113.4 7.9 79 3-85 2-80 (88)
180 4fxv_A ELAV-like protein 1; RN 99.8 4.9E-18 1.7E-22 112.3 11.3 77 108-188 18-98 (99)
181 2hgn_A Heterogeneous nuclear r 99.8 3.6E-19 1.2E-23 124.5 6.0 80 4-85 44-125 (139)
182 2fy1_A RNA-binding motif prote 99.8 9.6E-18 3.3E-22 114.2 12.6 81 107-191 5-88 (116)
183 2lcw_A RNA-binding protein FUS 99.6 3.2E-20 1.1E-24 126.8 0.0 83 3-85 4-97 (116)
184 2hgm_A HNRPF protein, heteroge 99.8 1.9E-18 6.7E-23 118.5 8.3 77 4-82 40-120 (126)
185 2wbr_A GW182, gawky, LD47780P; 99.8 8.5E-18 2.9E-22 106.2 10.4 73 108-186 6-78 (89)
186 2bz2_A Negative elongation fac 99.8 4.3E-18 1.5E-22 116.6 9.8 76 4-84 37-112 (121)
187 2dnl_A Cytoplasmic polyadenyla 99.8 7.4E-18 2.5E-22 114.5 10.8 75 3-80 5-85 (114)
188 2xs2_A Deleted in azoospermia- 99.8 6.3E-19 2.2E-23 117.5 5.3 80 4-85 7-88 (102)
189 3ex7_B RNA-binding protein 8A; 99.7 7.7E-18 2.6E-22 116.6 9.7 83 105-191 18-104 (126)
190 2pe8_A Splicing factor 45; RRM 99.7 1.1E-17 3.7E-22 111.5 9.7 80 3-82 5-93 (105)
191 2qfj_A FBP-interacting repress 99.7 9.9E-18 3.4E-22 126.6 10.6 83 4-86 123-208 (216)
192 3md3_A Nuclear and cytoplasmic 99.7 9.7E-18 3.3E-22 121.3 9.7 78 4-81 85-165 (166)
193 4f02_A Polyadenylate-binding p 99.7 6.5E-18 2.2E-22 127.5 9.0 79 5-83 102-181 (213)
194 2dnm_A SRP46 splicing factor; 99.7 2.3E-17 7.8E-22 110.1 10.7 85 103-191 7-95 (103)
195 4f25_A Polyadenylate-binding p 99.7 2.7E-17 9.4E-22 111.8 11.2 78 109-190 5-84 (115)
196 2cq3_A RNA-binding protein 9; 99.7 1E-16 3.5E-21 106.9 13.8 84 104-191 10-95 (103)
197 1x4a_A Splicing factor, argini 99.7 1.1E-16 3.7E-21 107.9 13.8 84 104-191 17-101 (109)
198 1sjq_A Polypyrimidine tract-bi 99.7 2.5E-17 8.6E-22 108.9 10.3 79 106-190 13-93 (105)
199 2dgo_A Cytotoxic granule-assoc 99.7 1.8E-16 6.1E-21 107.8 14.9 84 104-191 10-97 (115)
200 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.7E-16 5.8E-21 105.8 14.4 84 105-192 11-96 (103)
201 2d9p_A Polyadenylate-binding p 99.7 4.9E-17 1.7E-21 108.4 11.6 83 105-191 11-95 (103)
202 2j8a_A Histone-lysine N-methyl 99.7 6.2E-18 2.1E-22 114.0 7.0 76 7-82 3-95 (136)
203 2dnq_A RNA-binding protein 4B; 99.7 8.8E-17 3E-21 104.5 12.3 80 106-193 5-84 (90)
204 2dgs_A DAZ-associated protein 99.7 7.4E-17 2.5E-21 106.8 11.9 83 105-192 6-92 (99)
205 2dnz_A Probable RNA-binding pr 99.7 7.7E-17 2.6E-21 105.8 11.9 82 107-192 3-88 (95)
206 1whw_A Hypothetical protein ri 99.7 8.5E-17 2.9E-21 106.5 12.1 82 107-192 6-91 (99)
207 3u1l_A PRE-mRNA-splicing facto 99.7 1.1E-17 3.9E-22 126.6 8.3 78 4-84 132-230 (240)
208 1x5s_A Cold-inducible RNA-bind 99.7 7.8E-17 2.7E-21 107.2 11.5 81 106-190 9-93 (102)
209 2dgt_A RNA-binding protein 30; 99.7 1.6E-16 5.6E-21 103.6 12.8 79 105-191 6-84 (92)
210 3s8s_A Histone-lysine N-methyl 99.7 7.6E-17 2.6E-21 108.5 11.4 78 108-189 5-86 (110)
211 1fje_B Nucleolin RBD12, protei 99.7 1.2E-17 4.2E-22 122.0 8.2 78 4-83 97-174 (175)
212 2g4b_A Splicing factor U2AF 65 99.7 1.5E-17 5.2E-22 121.1 8.5 77 5-81 93-172 (172)
213 2dgx_A KIAA0430 protein; RRM d 99.7 9.4E-17 3.2E-21 105.6 11.4 81 106-190 6-91 (96)
214 2cq0_A Eukaryotic translation 99.7 1.1E-16 3.9E-21 106.6 12.0 84 105-192 11-98 (103)
215 2do4_A Squamous cell carcinoma 99.7 2.4E-16 8.1E-21 104.5 13.5 82 106-191 14-98 (100)
216 2e5j_A Methenyltetrahydrofolat 99.7 7.8E-17 2.7E-21 106.2 11.1 81 104-189 14-94 (97)
217 2yh0_A Splicing factor U2AF 65 99.7 2.6E-17 8.9E-22 122.6 9.5 81 4-84 112-195 (198)
218 2cjk_A Nuclear polyadenylated 99.7 1.6E-17 5.6E-22 120.4 8.1 78 5-83 86-166 (167)
219 2do0_A HnRNP M, heterogeneous 99.7 4.4E-16 1.5E-20 105.7 14.7 81 105-189 11-94 (114)
220 2cpf_A RNA binding motif prote 99.7 1.2E-16 4.1E-21 105.5 11.5 80 108-191 4-90 (98)
221 2cph_A RNA binding motif prote 99.7 1.7E-16 5.7E-21 106.6 12.3 85 104-192 10-100 (107)
222 4a8x_A RNA-binding protein wit 99.7 7.3E-17 2.5E-21 104.4 10.2 77 109-189 4-85 (88)
223 2dgp_A Bruno-like 4, RNA bindi 99.7 1.3E-16 4.6E-21 106.8 11.7 83 105-191 9-98 (106)
224 2hvz_A Splicing factor, argini 99.7 8.5E-17 2.9E-21 106.9 10.6 76 110-190 1-76 (101)
225 2dng_A Eukaryotic translation 99.7 2E-16 7E-21 105.4 12.5 83 104-192 10-96 (103)
226 1wi8_A EIF-4B, eukaryotic tran 99.7 1.4E-16 4.8E-21 106.4 11.4 83 105-193 11-98 (104)
227 2dgu_A Heterogeneous nuclear r 99.7 3.4E-16 1.2E-20 104.3 13.2 77 107-191 9-85 (103)
228 1x4g_A Nucleolysin TIAR; struc 99.7 1.8E-16 6.3E-21 106.7 12.0 81 106-192 22-102 (109)
229 2dit_A HIV TAT specific factor 99.7 1.1E-16 3.9E-21 108.2 11.0 81 4-85 13-104 (112)
230 2cpz_A CUG triplet repeat RNA- 99.7 4.4E-16 1.5E-20 105.9 13.9 82 106-191 22-107 (115)
231 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.5E-16 5.1E-21 102.7 11.0 79 107-189 4-86 (87)
232 1why_A Hypothetical protein ri 99.7 1.8E-16 6.1E-21 104.5 11.5 79 107-191 15-95 (97)
233 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-16 5.3E-21 104.2 11.1 80 103-186 10-93 (94)
234 1x4h_A RNA-binding protein 28; 99.7 2.9E-16 1E-20 106.1 12.8 83 105-191 11-103 (111)
235 1x5u_A Splicing factor 3B subu 99.7 1.7E-16 5.9E-21 106.1 11.4 83 104-190 10-96 (105)
236 1u6f_A Tcubp1, RNA-binding pro 99.7 4.8E-16 1.6E-20 109.3 14.2 84 104-191 37-124 (139)
237 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.5E-16 5.2E-21 105.8 11.0 83 106-192 9-95 (102)
238 3md1_A Nuclear and cytoplasmic 99.7 1.7E-16 6E-21 101.4 10.9 76 110-189 2-81 (83)
239 2cqc_A Arginine/serine-rich sp 99.7 3.7E-16 1.3E-20 102.5 12.6 81 104-188 10-94 (95)
240 2dnh_A Bruno-like 5, RNA bindi 99.7 4.8E-16 1.6E-20 104.0 13.1 84 107-191 13-99 (105)
241 1x4d_A Matrin 3; structural ge 99.7 1E-16 3.5E-21 105.9 9.6 78 107-190 13-93 (102)
242 3r27_A HnRNP L, heterogeneous 99.7 2E-16 6.7E-21 103.6 10.8 76 107-188 19-96 (100)
243 1l3k_A Heterogeneous nuclear r 99.7 5.7E-17 1.9E-21 120.6 9.3 81 5-86 103-186 (196)
244 2dnp_A RNA-binding protein 14; 99.7 2.3E-16 8E-21 102.4 11.1 77 106-190 6-82 (90)
245 3nmr_A Cugbp ELAV-like family 99.7 5.2E-17 1.8E-21 118.5 8.9 77 5-81 94-175 (175)
246 1b7f_A Protein (SXL-lethal pro 99.7 6.7E-17 2.3E-21 117.2 9.3 77 4-80 87-168 (168)
247 1wex_A Hypothetical protein (r 99.7 3.8E-16 1.3E-20 103.8 12.2 79 106-190 12-92 (104)
248 1x5t_A Splicing factor 3B subu 99.7 1.6E-16 5.4E-21 104.5 10.2 81 108-192 4-89 (96)
249 2dgv_A HnRNP M, heterogeneous 99.7 2E-16 6.9E-21 103.2 10.6 81 106-190 5-87 (92)
250 2ywk_A Putative RNA-binding pr 99.7 2.2E-16 7.6E-21 103.6 10.8 79 105-187 12-93 (95)
251 2cq1_A PTB-like protein L; RRM 99.7 4.9E-16 1.7E-20 102.6 12.4 79 106-190 12-92 (101)
252 2x1f_A MRNA 3'-END-processing 99.7 1.9E-16 6.5E-21 104.2 10.4 78 109-190 2-83 (96)
253 2la6_A RNA-binding protein FUS 99.7 2.5E-16 8.4E-21 104.2 11.0 80 103-186 7-98 (99)
254 2ad9_A Polypyrimidine tract-bi 99.7 1.7E-16 5.7E-21 107.5 10.3 79 106-190 28-108 (119)
255 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.2E-16 7.5E-21 101.4 10.4 76 107-186 5-84 (85)
256 1wf1_A RNA-binding protein RAL 99.7 3.2E-16 1.1E-20 105.7 11.7 77 106-190 24-101 (110)
257 3ulh_A THO complex subunit 4; 99.7 2.5E-16 8.5E-21 105.7 10.9 80 103-186 23-105 (107)
258 1p27_B RNA-binding protein 8A; 99.7 2.7E-16 9.2E-21 105.4 11.0 80 106-189 20-103 (106)
259 2voo_A Lupus LA protein; RNA-b 99.7 9.6E-17 3.3E-21 118.9 9.4 77 6-83 109-187 (193)
260 2jvo_A Nucleolar protein 3; nu 99.7 2.2E-16 7.5E-21 106.0 10.3 79 105-191 27-105 (108)
261 2cpi_A CCR4-NOT transcription 99.7 3.1E-16 1.1E-20 105.9 10.9 80 107-190 13-102 (111)
262 2cpj_A Non-POU domain-containi 99.7 4.2E-16 1.4E-20 103.1 11.3 80 106-191 12-91 (99)
263 1fxl_A Paraneoplastic encephal 99.7 1.1E-16 3.9E-21 115.8 9.2 76 5-80 87-167 (167)
264 2dhg_A TRNA selenocysteine ass 99.7 5E-16 1.7E-20 103.7 11.6 81 106-190 6-91 (104)
265 2kxn_B Transformer-2 protein h 99.7 2.5E-16 8.4E-21 109.1 10.3 82 105-190 42-127 (129)
266 2e44_A Insulin-like growth fac 99.7 4.7E-16 1.6E-20 102.2 10.9 81 105-189 11-92 (96)
267 2div_A TRNA selenocysteine ass 99.7 5.8E-16 2E-20 102.4 11.4 84 107-190 7-95 (99)
268 2cpd_A Apobec-1 stimulating pr 99.7 1.7E-15 5.8E-20 100.1 13.4 77 106-190 12-90 (99)
269 2cqh_A IGF-II mRNA-binding pro 99.7 2.9E-16 1E-20 102.6 9.5 79 107-192 6-86 (93)
270 2lxi_A RNA-binding protein 10; 99.7 9.4E-17 3.2E-21 104.4 6.9 77 110-190 2-84 (91)
271 2xnq_A Nuclear polyadenylated 99.7 7.4E-16 2.5E-20 101.4 11.3 77 104-188 17-94 (97)
272 3v4m_A Splicing factor U2AF 65 99.7 2.4E-16 8.4E-21 105.0 8.9 80 3-82 2-96 (105)
273 2cqp_A RNA-binding protein 12; 99.7 4.4E-16 1.5E-20 102.8 10.1 82 105-190 11-96 (98)
274 2cpx_A Hypothetical protein FL 99.7 8.3E-16 2.8E-20 104.5 11.7 82 107-192 23-108 (115)
275 3pgw_A U1-A; protein-RNA compl 99.7 2.9E-16 9.9E-21 123.4 10.8 75 5-81 206-281 (282)
276 2err_A Ataxin-2-binding protei 99.7 4.4E-16 1.5E-20 104.8 10.1 81 105-189 25-107 (109)
277 1oo0_B CG8781-PA, drosophila Y 99.7 5.3E-16 1.8E-20 104.6 10.6 82 105-190 22-107 (110)
278 2cpe_A RNA-binding protein EWS 99.7 1.1E-15 3.7E-20 103.6 12.0 83 106-192 12-106 (113)
279 1qm9_A Polypyrimidine tract-bi 99.7 2.3E-16 8E-21 117.5 9.3 77 5-83 119-197 (198)
280 2jrs_A RNA-binding protein 39; 99.7 1.3E-15 4.4E-20 102.3 11.9 81 105-189 22-106 (108)
281 2dgw_A Probable RNA-binding pr 99.7 1.3E-15 4.6E-20 99.0 11.6 81 104-190 5-88 (91)
282 2fc9_A NCL protein; structure 99.7 4.5E-16 1.5E-20 103.3 9.4 79 106-191 12-93 (101)
283 2kvi_A Nuclear polyadenylated 99.7 3.7E-16 1.3E-20 102.8 8.8 76 106-189 7-83 (96)
284 2ytc_A PRE-mRNA-splicing facto 99.7 8.5E-16 2.9E-20 98.7 10.3 75 106-186 9-84 (85)
285 2la4_A Nuclear and cytoplasmic 99.7 5.8E-16 2E-20 102.8 9.8 76 107-188 25-100 (101)
286 2kt5_A RNA and export factor-b 99.7 4.2E-15 1.4E-19 102.4 14.5 82 104-189 30-114 (124)
287 2lkz_A RNA-binding protein 5; 99.7 3.8E-16 1.3E-20 102.0 8.6 78 107-188 7-94 (95)
288 1sjr_A Polypyrimidine tract-bi 99.7 8.8E-16 3E-20 109.2 11.1 81 108-190 45-125 (164)
289 2adc_A Polypyrimidine tract-bi 99.7 5.8E-16 2E-20 118.0 10.8 77 5-83 150-228 (229)
290 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.5E-15 5.3E-20 108.8 12.4 80 107-190 37-120 (156)
291 2dh8_A DAZ-associated protein 99.7 1.7E-15 5.7E-20 101.3 11.7 82 104-190 11-96 (105)
292 1x4e_A RNA binding motif, sing 99.7 1.1E-16 3.6E-21 102.9 5.6 68 107-174 3-74 (85)
293 1x5p_A Negative elongation fac 99.7 3.5E-15 1.2E-19 98.2 13.0 81 106-194 12-92 (97)
294 2khc_A Testis-specific RNP-typ 99.7 1.1E-15 3.6E-20 104.5 10.7 78 105-186 36-117 (118)
295 3p5t_L Cleavage and polyadenyl 99.6 2.8E-16 9.7E-21 102.0 7.0 77 110-190 2-84 (90)
296 2a3j_A U1 small nuclear ribonu 99.6 1.1E-15 3.6E-20 105.3 9.9 81 106-190 26-111 (127)
297 3tyt_A Heterogeneous nuclear r 99.6 2.9E-16 9.9E-21 117.5 7.6 76 5-80 122-204 (205)
298 2cqd_A RNA-binding region cont 99.6 7.2E-15 2.5E-19 100.0 13.7 81 104-189 12-96 (116)
299 3s7r_A Heterogeneous nuclear r 99.6 2.1E-15 7.3E-20 97.2 10.5 75 106-185 8-86 (87)
300 2cqg_A TDP-43, TAR DNA-binding 99.6 9.4E-15 3.2E-19 97.2 13.7 80 105-190 11-94 (103)
301 1x4b_A Heterogeneous nuclear r 99.6 2.4E-15 8.1E-20 102.4 10.6 80 107-191 25-108 (116)
302 1x4f_A Matrin 3; structural ge 99.6 1.6E-15 5.6E-20 101.5 9.5 78 106-189 22-102 (112)
303 3lqv_A PRE-mRNA branch site pr 99.6 2.2E-15 7.5E-20 102.4 10.3 80 106-189 5-85 (115)
304 3ucg_A Polyadenylate-binding p 99.6 2.9E-15 9.9E-20 97.0 10.4 75 109-188 6-84 (89)
305 2m2b_A RNA-binding protein 10; 99.6 9.1E-16 3.1E-20 106.7 8.5 80 106-190 20-109 (131)
306 1whx_A Hypothetical protein ri 99.6 6.3E-16 2.1E-20 104.3 7.3 76 107-188 8-83 (111)
307 1s79_A Lupus LA protein; RRM, 99.6 1.2E-15 4.2E-20 101.3 8.6 74 107-185 9-85 (103)
308 1wez_A HnRNP H', FTP-3, hetero 99.6 2.1E-15 7.1E-20 100.1 9.7 78 105-188 11-91 (102)
309 2jwn_A Embryonic polyadenylate 99.6 3.1E-15 1.1E-19 103.0 11.0 78 108-190 35-116 (124)
310 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.2E-15 1.1E-19 105.1 11.2 79 103-185 57-139 (140)
311 2cq2_A Hypothetical protein LO 99.6 1.7E-15 5.8E-20 101.5 9.1 82 107-190 23-107 (114)
312 1fjc_A Nucleolin RBD2, protein 99.6 1.3E-15 4.5E-20 100.1 8.4 80 106-190 13-92 (96)
313 2dnn_A RNA-binding protein 12; 99.6 1.9E-15 6.4E-20 101.3 9.2 78 105-188 12-92 (109)
314 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 100.4 7.7 77 107-187 13-93 (95)
315 2krb_A Eukaryotic translation 99.6 5.3E-16 1.8E-20 98.7 5.8 66 110-175 2-75 (81)
316 1nu4_A U1A RNA binding domain; 99.6 1.3E-15 4.4E-20 100.3 7.8 81 106-190 5-90 (97)
317 2db1_A Heterogeneous nuclear r 99.6 3.2E-15 1.1E-19 101.9 10.1 80 104-188 12-97 (118)
318 2e5i_A Heterogeneous nuclear r 99.6 8.8E-15 3E-19 99.9 12.1 77 110-190 26-103 (124)
319 1wg5_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 99.2 10.2 80 104-188 10-93 (104)
320 2cq4_A RNA binding motif prote 99.6 1.4E-15 4.6E-20 103.3 8.0 79 107-190 23-105 (114)
321 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.4E-16 1.5E-20 103.2 5.4 79 104-188 14-97 (100)
322 3n9u_C Cleavage and polyadenyl 99.6 4.4E-15 1.5E-19 106.1 10.8 77 108-188 54-136 (156)
323 2rs2_A Musashi-1, RNA-binding 99.6 3.2E-15 1.1E-19 100.5 9.5 81 106-191 22-106 (109)
324 3zzy_A Polypyrimidine tract-bi 99.6 7.2E-15 2.5E-19 100.7 11.3 79 109-190 28-107 (130)
325 1x5o_A RNA binding motif, sing 99.6 1.7E-14 5.9E-19 97.8 13.1 82 107-188 23-111 (114)
326 3tht_A Alkylated DNA repair pr 99.6 1.9E-15 6.3E-20 120.5 9.6 77 2-81 14-97 (345)
327 2e5g_A U6 snRNA-specific termi 99.6 6.7E-15 2.3E-19 96.3 10.7 73 108-187 7-80 (94)
328 2nlw_A Eukaryotic translation 99.6 4.6E-15 1.6E-19 99.1 9.9 78 107-188 13-99 (105)
329 1p1t_A Cleavage stimulation fa 99.6 3.6E-15 1.2E-19 99.4 9.4 79 108-190 7-89 (104)
330 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.5E-14 5.2E-19 95.1 12.1 76 6-85 10-92 (100)
331 2hgl_A HNRPF protein, heteroge 99.6 2.9E-15 9.8E-20 104.3 9.0 80 103-187 38-123 (136)
332 2fc8_A NCL protein; structure 99.6 1.3E-14 4.5E-19 96.3 11.8 81 105-192 11-95 (102)
333 2dis_A Unnamed protein product 99.6 8.7E-15 3E-19 98.4 10.9 80 107-190 6-93 (109)
334 1wg1_A KIAA1579 protein, homol 99.6 3.1E-15 1.1E-19 96.6 8.3 75 108-189 4-78 (88)
335 2hgn_A Heterogeneous nuclear r 99.6 2.8E-16 9.7E-21 109.8 3.6 120 46-190 2-124 (139)
336 1jmt_A Splicing factor U2AF 35 99.6 3.3E-16 1.1E-20 104.2 3.1 70 11-80 20-103 (104)
337 3ns6_A Eukaryotic translation 99.6 3.8E-15 1.3E-19 98.6 8.3 76 108-186 5-90 (100)
338 2mss_A Protein (musashi1); RNA 99.6 1.8E-15 6.1E-20 94.7 6.4 69 111-184 1-73 (75)
339 2hzc_A Splicing factor U2AF 65 99.6 5.3E-15 1.8E-19 95.3 8.7 71 107-184 4-85 (87)
340 2bz2_A Negative elongation fac 99.6 7.8E-15 2.7E-19 100.3 9.7 78 106-191 36-113 (121)
341 2cpy_A RNA-binding protein 12; 99.6 5E-15 1.7E-19 100.4 8.7 79 106-189 12-94 (114)
342 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.3E-15 7.7E-20 94.8 6.4 71 110-185 1-75 (77)
343 2diu_A KIAA0430 protein; struc 99.6 9.9E-15 3.4E-19 93.1 9.0 72 109-190 9-85 (96)
344 3ue2_A Poly(U)-binding-splicin 99.6 3E-15 1E-19 101.5 6.9 79 4-82 18-108 (118)
345 3d2w_A TAR DNA-binding protein 99.6 1.1E-14 3.8E-19 94.1 9.2 78 105-189 7-84 (89)
346 3egn_A RNA-binding protein 40; 99.6 1.5E-14 5.1E-19 102.1 10.7 81 107-191 43-132 (143)
347 1fj7_A Nucleolin RBD1, protein 99.6 1.3E-14 4.5E-19 96.2 9.8 78 107-190 15-96 (101)
348 2ki2_A SS-DNA binding protein 99.6 1.4E-15 4.9E-20 98.7 4.9 74 110-188 2-79 (90)
349 3sde_A Paraspeckle component 1 99.6 6.4E-15 2.2E-19 114.4 9.0 81 4-84 94-180 (261)
350 2f3j_A RNA and export factor b 99.6 2E-14 6.7E-19 104.9 10.7 79 105-187 84-165 (177)
351 2lmi_A GRSF-1, G-rich sequence 99.6 3.7E-15 1.3E-19 99.9 6.1 78 105-187 7-90 (107)
352 1wel_A RNA-binding protein 12; 99.6 7.8E-15 2.7E-19 101.0 7.8 79 104-187 20-102 (124)
353 3s6e_A RNA-binding protein 39; 99.6 2.4E-14 8.2E-19 96.4 9.4 77 4-81 5-91 (114)
354 1wf0_A TDP-43, TAR DNA-binding 99.5 1.2E-14 4.2E-19 93.8 6.6 76 108-192 4-81 (88)
355 3q2s_C Cleavage and polyadenyl 99.5 2.1E-14 7.3E-19 109.1 8.8 76 108-187 67-148 (229)
356 2dha_A FLJ20171 protein; RRM d 99.5 1.9E-14 6.4E-19 98.4 7.5 76 107-187 21-103 (123)
357 2lcw_A RNA-binding protein FUS 99.3 6.6E-16 2.3E-20 105.2 0.0 82 107-192 5-98 (116)
358 1iqt_A AUF1, heterogeneous nuc 99.5 7.3E-15 2.5E-19 91.9 4.7 64 111-175 1-68 (75)
359 2dit_A HIV TAT specific factor 99.5 3.1E-13 1.1E-17 91.2 12.3 82 106-191 12-104 (112)
360 2hgm_A HNRPF protein, heteroge 99.5 2.4E-14 8.3E-19 98.1 6.8 76 105-186 38-118 (126)
361 2xs2_A Deleted in azoospermia- 99.5 3.7E-14 1.3E-18 94.2 7.3 75 107-187 7-84 (102)
362 2pe8_A Splicing factor 45; RRM 99.5 3E-13 1E-17 89.9 10.8 78 107-188 6-93 (105)
363 2dnl_A Cytoplasmic polyadenyla 99.5 1.8E-13 6.2E-18 92.7 9.6 60 107-167 6-72 (114)
364 2j8a_A Histone-lysine N-methyl 99.5 1.7E-13 5.8E-18 92.4 9.0 76 110-189 3-96 (136)
365 3u1l_A PRE-mRNA-splicing facto 99.5 2.2E-13 7.7E-18 103.1 8.6 80 105-190 130-230 (240)
366 2voo_A Lupus LA protein; RNA-b 99.4 5E-12 1.7E-16 93.5 13.9 75 108-187 108-185 (193)
367 1owx_A Lupus LA protein, SS-B, 99.4 1.5E-12 5.1E-17 87.8 9.6 75 4-81 16-94 (121)
368 3v4m_A Splicing factor U2AF 65 99.4 2.2E-12 7.6E-17 85.7 8.7 76 108-187 4-95 (105)
369 2dnr_A Synaptojanin-1; RRM dom 99.4 2.9E-12 1E-16 80.9 8.3 74 3-82 4-85 (91)
370 3s6e_A RNA-binding protein 39; 99.4 3.7E-12 1.3E-16 85.7 9.3 77 107-187 5-91 (114)
371 3ue2_A Poly(U)-binding-splicin 99.3 5.7E-12 2E-16 85.3 9.1 76 108-187 19-107 (118)
372 3tht_A Alkylated DNA repair pr 99.3 2.4E-12 8.3E-17 102.6 7.7 66 106-173 15-82 (345)
373 1jmt_A Splicing factor U2AF 35 99.3 1.6E-12 5.5E-17 86.3 4.3 68 114-185 20-102 (104)
374 2d9o_A DNAJ (HSP40) homolog, s 99.3 8.4E-11 2.9E-15 77.1 12.1 65 119-190 27-91 (100)
375 1owx_A Lupus LA protein, SS-B, 99.2 6.5E-11 2.2E-15 79.7 8.8 71 103-175 12-86 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.2 7.3E-11 2.5E-15 74.9 7.4 72 4-81 13-93 (95)
377 2dnr_A Synaptojanin-1; RRM dom 99.1 4E-10 1.4E-14 71.2 8.2 74 108-190 6-87 (91)
378 3dxb_A Thioredoxin N-terminall 99.1 3.6E-10 1.2E-14 85.4 7.5 64 18-81 141-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 99.0 1.3E-09 4.6E-14 69.1 7.4 71 107-186 13-92 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.9 8.9E-09 3E-13 66.6 8.8 72 5-79 20-96 (117)
381 2dhx_A Poly (ADP-ribose) polym 98.7 7.1E-07 2.4E-11 57.3 11.2 89 4-122 6-99 (104)
382 3dxb_A Thioredoxin N-terminall 98.6 8.8E-08 3E-12 72.2 7.5 62 121-186 141-210 (222)
383 2l9w_A U4/U6 snRNA-associated- 98.6 5.5E-07 1.9E-11 58.3 9.7 71 108-184 20-95 (117)
384 1wey_A Calcipressin 1; structu 98.5 1.8E-06 6.1E-11 55.8 9.5 77 4-83 3-84 (104)
385 1uw4_A UPF3X; nonsense mediate 98.1 3.4E-05 1.2E-09 48.9 8.9 65 7-71 2-71 (91)
386 1wwh_A Nucleoporin 35, nucleop 98.1 3.3E-05 1.1E-09 51.3 8.6 72 5-81 23-95 (119)
387 1whv_A Poly(A)-specific ribonu 97.9 4E-05 1.4E-09 48.6 6.8 54 7-66 17-70 (100)
388 1wey_A Calcipressin 1; structu 97.8 6.2E-05 2.1E-09 48.6 6.8 73 109-187 5-82 (104)
389 1wwh_A Nucleoporin 35, nucleop 97.7 0.0002 6.7E-09 47.6 8.0 66 106-175 21-86 (119)
390 3ctr_A Poly(A)-specific ribonu 97.7 5.4E-05 1.8E-09 48.2 5.0 53 8-66 8-60 (101)
391 3p3d_A Nucleoporin 53; structu 97.7 9.2E-05 3.1E-09 49.8 6.1 76 4-81 5-97 (132)
392 1whv_A Poly(A)-specific ribonu 97.7 0.00049 1.7E-08 43.6 8.6 54 110-168 17-70 (100)
393 1uw4_A UPF3X; nonsense mediate 97.6 0.00063 2.2E-08 43.0 8.4 67 110-176 2-74 (91)
394 2dhx_A Poly (ADP-ribose) polym 97.5 0.00074 2.5E-08 43.4 7.6 55 108-166 7-66 (104)
395 2l08_A Regulator of nonsense t 97.5 0.0004 1.4E-08 44.3 6.2 67 5-71 8-79 (97)
396 3ctr_A Poly(A)-specific ribonu 97.4 0.00038 1.3E-08 44.3 5.4 53 111-168 8-60 (101)
397 3pq1_A Poly(A) RNA polymerase; 97.2 0.00022 7.5E-09 58.9 3.7 55 6-63 53-107 (464)
398 3p3d_A Nucleoporin 53; structu 96.2 0.0079 2.7E-07 40.5 4.8 66 108-175 6-89 (132)
399 2l08_A Regulator of nonsense t 96.1 0.0077 2.6E-07 38.3 4.3 68 110-177 10-83 (97)
400 3pq1_A Poly(A) RNA polymerase; 96.1 0.0055 1.9E-07 50.7 4.4 55 109-165 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 94.1 0.14 4.7E-06 43.2 7.2 55 7-67 441-495 (507)
402 2g0c_A ATP-dependent RNA helic 89.6 2.1 7.2E-05 25.5 7.0 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 89.2 1.6 5.4E-05 36.7 8.1 55 110-169 441-495 (507)
404 4eyt_A Telomerase associated p 81.6 7.1 0.00024 24.0 7.8 57 107-167 10-66 (129)
405 4e8u_A Putative uncharacterize 73.1 6.3 0.00022 27.7 4.8 56 8-63 14-81 (172)
406 4eyt_A Telomerase associated p 69.3 17 0.00059 22.4 8.3 69 4-79 10-78 (129)
407 3lpe_A Putative transcription 65.3 22 0.00074 22.0 8.4 34 32-67 39-72 (92)
408 3j21_T 50S ribosomal protein L 61.7 25 0.00086 21.6 6.3 56 8-63 24-81 (86)
409 3ts2_A Protein LIN-28 homolog 59.4 1.4 4.8E-05 30.4 -0.7 28 21-53 2-29 (148)
410 1vq8_S 50S ribosomal protein L 56.5 32 0.0011 21.1 5.6 54 9-62 24-79 (85)
411 4a17_R RPL23A, 60S ribosomal p 42.8 71 0.0024 21.8 5.6 54 9-62 89-144 (150)
412 2zkr_s 60S ribosomal protein L 41.6 81 0.0028 21.7 5.8 55 9-63 95-151 (156)
413 3u5e_X 60S ribosomal protein L 41.5 77 0.0026 21.4 5.6 54 9-62 81-136 (142)
414 2e5p_A Protein PHF1, PHD finge 41.4 14 0.00047 21.3 1.6 12 45-56 37-48 (68)
415 3iz5_X 60S ribosomal protein L 40.3 67 0.0023 22.0 5.2 55 9-63 91-147 (152)
416 3fry_A Probable copper-exporti 39.1 52 0.0018 18.5 5.3 54 110-166 7-60 (73)
417 1nz8_A Transcription antitermi 38.5 53 0.0018 21.2 4.5 24 44-67 61-89 (119)
418 2eqj_A Metal-response element- 38.1 17 0.00057 21.1 1.6 12 44-55 40-51 (66)
419 3fut_A Dimethyladenosine trans 36.5 32 0.0011 26.1 3.6 31 7-38 111-141 (271)
420 2m0o_A PHD finger protein 1; t 36.5 17 0.00058 21.6 1.5 12 45-56 54-65 (79)
421 2ki0_A DS119; beta-alpha-beta, 36.4 20 0.00069 17.0 1.5 20 4-28 3-22 (36)
422 3h7h_B Transcription elongatio 32.0 99 0.0034 19.6 5.9 35 32-68 40-74 (106)
423 4a4j_A Pacszia, cation-transpo 31.7 67 0.0023 17.6 4.6 54 110-165 4-60 (69)
424 3swz_A Steroid 17-alpha-hydrox 30.0 78 0.0027 25.7 5.2 59 9-74 17-79 (494)
425 3uzu_A Ribosomal RNA small sub 28.1 18 0.00061 27.7 0.9 32 7-38 115-146 (279)
426 2od0_A Hypothetical protein VP 27.4 56 0.0019 20.6 3.1 28 18-50 4-31 (105)
427 4hcz_A PHD finger protein 1; p 25.5 37 0.0013 19.0 1.6 12 45-56 31-42 (58)
428 4bby_A Alkyldihydroxyacetoneph 25.4 58 0.002 28.3 3.7 54 13-66 350-409 (658)
429 2ns6_A Mobilization protein A; 25.3 1.2E+02 0.0041 21.5 4.8 46 10-55 74-127 (185)
430 1ik9_C DNA ligase IV; DNA END 24.2 60 0.0021 16.2 2.2 15 16-30 20-34 (37)
431 3p8b_B Transcription antitermi 24.0 73 0.0025 21.6 3.3 34 33-68 33-66 (152)
432 1qyr_A KSGA, high level kasuga 23.5 56 0.0019 24.4 2.9 28 8-35 92-119 (252)
433 1i4w_A Mitochondrial replicati 22.8 56 0.0019 25.9 2.9 22 8-29 144-165 (353)
434 3ftd_A Dimethyladenosine trans 22.7 51 0.0017 24.5 2.5 29 7-35 96-124 (249)
435 3tqs_A Ribosomal RNA small sub 22.3 24 0.00082 26.5 0.6 31 8-38 98-128 (255)
436 1eij_A Hypothetical protein MT 21.5 71 0.0024 19.2 2.5 20 12-31 50-69 (80)
437 3tbg_A Cytochrome P450 2D6; mo 21.3 62 0.0021 26.1 3.0 48 10-63 20-70 (479)
438 2cs4_A Protein C12ORF2; GTP bi 20.6 62 0.0021 20.2 2.1 22 11-32 21-43 (95)
439 2e7g_A Putative ribosome-bindi 20.6 1.6E+02 0.0055 19.3 4.4 35 133-167 43-78 (129)
440 2k5n_A Putative cold-shock pro 20.5 40 0.0014 19.9 1.2 11 44-54 13-23 (74)
441 1wvf_A 4-cresol dehydrogenase 20.3 59 0.002 27.2 2.7 41 22-62 217-261 (520)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.9e-37 Score=232.68 Aligned_cols=164 Identities=23% Similarity=0.327 Sum_probs=144.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.|.++|||+|||+++|+++|+++|++||+|.+|.|.. ++.++|||||+|.+.++|.+|+..||+..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4789999999999999999999999999999999954 5778999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--ccEEEEEEcCHH
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYD 158 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~--~~~~fV~f~~~~ 158 (235)
....... .....+|||+|||..+++++|.++|.+||.|..+.++.+.+ +|||||+|.+.+
T Consensus 93 ~~~~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 93 QRDPSLR------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp CCCTHHH------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred ccccccc------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 6433211 12335899999999999999999999999999999998764 469999999999
Q ss_pred HHHHHHHHhcCCeecCccceeEEEEeecCCC
Q 026659 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 159 ~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
+|.+|+..|||..+.| +.|.|..+..+
T Consensus 155 ~a~~Ai~~lng~~~~g----~~i~V~~a~~~ 181 (213)
T 4f02_A 155 AAERAIEKMNGMLLND----RKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECCCH
T ss_pred HHHHHHHHhCCCEECC----EEEEEEEcCCC
Confidence 9999999999999999 78888877654
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.6e-35 Score=221.25 Aligned_cols=179 Identities=15% Similarity=0.194 Sum_probs=143.8
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLP-GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~-~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.++++|||+||| +.+|+++|+++|++||.|..|++..+ .+|||||+|.++++|+.|+..|||..+.|+.|.|.++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999754 479999999999999999999999999999999999975
Q ss_pred CCCCCCCC---CCC----CCCCCC--CCC--------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCc--eEEEEEe
Q 026659 83 GRRHSSSM---DRY----SSYSSG--GSR--------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 143 (235)
Q Consensus 83 ~~~~~~~~---~~~----~~~~~~--~~~--------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v--~~~~~~~ 143 (235)
....+... ... ..+... .+. .....+..+|||+|||..+++++|.++|.+||.| ..+.+..
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 44321100 000 000000 000 0112456789999999999999999999999999 8888887
Q ss_pred cCC--ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 144 DRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 144 ~~~--~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
+.. .|+|||+|.+.++|..|+..|||..+.|+.....+.|+
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 642 47999999999999999999999999997665555544
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-35 Score=213.13 Aligned_cols=159 Identities=23% Similarity=0.364 Sum_probs=141.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
++|||+|||+++|+++|+++|++||+|.+|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999954 45678999999999999999999899999999999999987544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHH
Q 026659 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDM 160 (235)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A 160 (235)
.. ...+..+|+|+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.++|
T Consensus 81 ~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 81 QS------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CC------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CC------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 32 224567999999999999999999999999999999998743 46999999999999
Q ss_pred HHHHHHhcCCeecCccceeEEEEeecC
Q 026659 161 KYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
.+|+..|||..+.| +.|+|..++
T Consensus 143 ~~A~~~l~g~~~~g----~~i~v~~a~ 165 (166)
T 3md3_A 143 QNAMDSMQGQDLNG----RPLRINWAA 165 (166)
T ss_dssp HHHHHHHTTCEETT----EECEEEESC
T ss_pred HHHHHHhCCCccCC----cEEEEEecC
Confidence 99999999999999 778777654
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.2e-35 Score=212.18 Aligned_cols=152 Identities=24% Similarity=0.370 Sum_probs=137.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
++++|||+|||+++|+++|+++|+.||+|..+.+.. ++.++|||||+|.++++|..|+..|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 478999999999999999999999999999999954 56778999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCH
Q 026659 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (235)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~ 157 (235)
+... .....+|+|+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.
T Consensus 81 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 81 PSSA--------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CCCG--------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 5432 12346899999999999999999999999999999998753 46999999999
Q ss_pred HHHHHHHHHhcCCeecCcc
Q 026659 158 DDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 158 ~~A~~a~~~l~g~~~~g~~ 176 (235)
++|.+|+..|||..+.|+.
T Consensus 141 ~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCS
T ss_pred HHHHHHHHHhcCCccCCCc
Confidence 9999999999999999954
No 5
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=6e-34 Score=213.35 Aligned_cols=179 Identities=22% Similarity=0.363 Sum_probs=145.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~----G-------~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (235)
+.+++|||+|||+++|+++|+++|++| | .|..+.+. .++|||||+|.++++|++|+ .|||..+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 478999999999999999999999999 5 56666553 45899999999999999999 799999999
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----cc
Q 026659 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GM 148 (235)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~ 148 (235)
+.|.|.++.................+...........++|||+|||..+++++|.++|.+||.|..+.+..+.. .|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999998765433322111111111112223345678999999999999999999999999999999998853 46
Q ss_pred EEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 149 ~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
||||+|.+.++|.+|+..|||..+.| +.|+|..+.++.
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 195 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVGA 195 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCCC
Confidence 99999999999999999999999999 788888876554
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.2e-34 Score=216.78 Aligned_cols=168 Identities=17% Similarity=0.296 Sum_probs=139.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.++++|.+|+. +++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999954 46789999999999999999998 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcC
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~ 156 (235)
........ .......++|||+|||..+++++|.++|..||.|..+.+..+.. .|||||+|.+
T Consensus 90 ~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 90 VSREDSQR--------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp CC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cCcccccc--------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 75433211 11223457999999999999999999999999999999998753 4699999999
Q ss_pred HHHHHHHHHHhcCCeecCccceeEEEEeecCCCCC
Q 026659 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRRS 191 (235)
Q Consensus 157 ~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~s 191 (235)
.++|.+|+.. +|..+.| ..|.|..+.++..
T Consensus 156 ~~~A~~A~~~-~~~~~~G----~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 156 HDSVDKIVIQ-KYHTVNG----HNCEVRKALSKQE 185 (196)
T ss_dssp HHHHHHHHHC-SCCEETT----EECEEEECC----
T ss_pred HHHHHHHHHh-CCcEECC----EEEEEEecCChhH
Confidence 9999999976 8999999 7888887765553
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=6.4e-34 Score=224.52 Aligned_cols=180 Identities=19% Similarity=0.296 Sum_probs=146.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
..++++|||+|||+++|+++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999966 899999999999998889999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCC-----CC---------------------------------CCC----------------------CC-
Q 026659 79 LAHGGRRHSSSM-----DR---------------------------------YSS----------------------YS- 97 (235)
Q Consensus 79 ~~~~~~~~~~~~-----~~---------------------------------~~~----------------------~~- 97 (235)
++.......... .+ ... +.
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 997543210000 00 000 00
Q ss_pred ------CCC------------------------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc
Q 026659 98 ------SGG------------------------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 147 (235)
Q Consensus 98 ------~~~------------------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~ 147 (235)
+.+ .......+.++|||+|||..+++++|.++|.+||.|..+.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 000 000122355789999999999999999999999999999998665 4
Q ss_pred cEEEEEEcCHHHHHHHHHHhcCCeec-CccceeEEEEeecC
Q 026659 148 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYD 187 (235)
Q Consensus 148 ~~~fV~f~~~~~A~~a~~~l~g~~~~-g~~~~~~i~v~~~~ 187 (235)
|+|||+|.+.++|.+|+..|||..+. | ..|+|..++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQN----NAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCC----CEEEEEEec
Confidence 69999999999999999999999999 7 678877654
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.9e-34 Score=208.85 Aligned_cols=150 Identities=27% Similarity=0.388 Sum_probs=137.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
++++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.++++|..|+..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 689999999999999999999999999999999953 56788999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCH
Q 026659 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (235)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~ 157 (235)
+... .....+|+|+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.
T Consensus 82 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 82 PGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CCSS--------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 5432 13457899999999999999999999999999999998763 36999999999
Q ss_pred HHHHHHHHHhcCCeecC
Q 026659 158 DDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 158 ~~A~~a~~~l~g~~~~g 174 (235)
++|.+|+..|||..+.|
T Consensus 142 ~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 142 EEAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHhcCCEecC
Confidence 99999999999999977
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=8e-34 Score=215.46 Aligned_cols=173 Identities=19% Similarity=0.293 Sum_probs=144.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 458999999999999999999999999999999954 56789999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCH
Q 026659 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (235)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~ 157 (235)
......... ...........+|||+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.
T Consensus 107 ~~~~~~~~~---------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 107 NIGQAQPII---------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp CCGGGHHHH---------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred Cccccchhh---------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 432110000 00000123457999999999999999999999999999999998843 46999999999
Q ss_pred HHHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 158 ~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
++|.+|+..|||..+.| +.|+|..+...+
T Consensus 178 ~~A~~A~~~l~g~~~~g----~~i~V~~a~~~~ 206 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGG----QYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHHHHTTCBCSS----SBCEEEECSSCS
T ss_pred HHHHHHHHHccCCEeCC----cEEEEEEecCCC
Confidence 99999999999999999 788888876654
No 10
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.9e-33 Score=215.21 Aligned_cols=178 Identities=19% Similarity=0.213 Sum_probs=144.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.++++|||+|||+ ++++++|+++|++||.|..|.+..+. +|||||+|.++++|++|+..|||..+.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5789999999999 99999999999999999999997654 79999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCC-----CCCCCC--CC--------CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEecCC
Q 026659 83 GRRHSSSMDRY-----SSYSSG--GS--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG 146 (235)
Q Consensus 83 ~~~~~~~~~~~-----~~~~~~--~~--------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~ 146 (235)
........... ..+... .. ......+..+|||+|||..+++++|.++|.+|| .|..+.+..+ .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~ 188 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-D 188 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-S
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-C
Confidence 53222111000 000000 00 011234568999999999999999999999999 9999988653 3
Q ss_pred ccEEEEEEcCHHHHHHHHHHhcCCeec-CccceeEEEEeecCC
Q 026659 147 GMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYDS 188 (235)
Q Consensus 147 ~~~~fV~f~~~~~A~~a~~~l~g~~~~-g~~~~~~i~v~~~~~ 188 (235)
.++|||+|.+.++|.+|+..|||..+. | +.|+|...++
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~~a~~ 227 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSKS 227 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEEECSS
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEEEecC
Confidence 569999999999999999999999999 7 6777777653
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=8.3e-35 Score=213.95 Aligned_cols=163 Identities=16% Similarity=0.245 Sum_probs=140.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
..+.++|||+|||+++|+++|+++|..||.+..+.+ ..++.++|||||+|.++++|.+|++ |||..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999997766333 3467889999999999999999995 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHH
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDM 160 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A 160 (235)
...... ......+|||+|||..+++++|.++|.+||.|..+ .......|+|||+|.+.++|
T Consensus 89 ~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 89 KGRDSK------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CCSSCS------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHH
T ss_pred CCcccc------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHH
Confidence 764321 12356799999999999999999999999998877 22334568999999999999
Q ss_pred HHHHHHhcCCeecCccceeEEEEeecCCC
Q 026659 161 KYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
.+|+..|||..+.| +.|+|..+.++
T Consensus 150 ~~A~~~l~g~~~~g----~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDG----RSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETT----EEEEEEECSSC
T ss_pred HHHHHHhCCCEECC----eEEEEEecCCC
Confidence 99999999999999 78888887654
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.3e-33 Score=207.40 Aligned_cols=161 Identities=15% Similarity=0.276 Sum_probs=136.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---C--CCCCeEEEEecCHHHHHHHHHhcCCCccC---CceEE
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---P--RPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLR 76 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~---~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~i~ 76 (235)
++++|||+|||+++|+++|+++|++||+|.+|.+..+ + .++|||||+|.++++|.+|+..|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 6799999999999999999999999999999999542 2 67899999999999999999999998775 67888
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEE
Q 026659 77 VELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVD 153 (235)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~ 153 (235)
+.++...... .....+|||+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+
T Consensus 82 ~~~~~~~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~ 142 (175)
T 3nmr_A 82 MKPADSEKNN-------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT 142 (175)
T ss_dssp EEECGGGCCS-------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEE
T ss_pred Eccccccccc-------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEE
Confidence 8887643321 23456899999999999999999999999999999998854 4699999
Q ss_pred EcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 154 YTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 154 f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
|.+.++|.+|+..|||..+.+.. .+.|.|..
T Consensus 143 f~~~~~A~~A~~~l~g~~~~~g~-~~~l~V~~ 173 (175)
T 3nmr_A 143 FTTRAMAQTAIKAMHQAQTMEGC-SSPMVVKF 173 (175)
T ss_dssp ESSHHHHHHHHHHHTTSCCCTTC-SSCCEEEE
T ss_pred ECCHHHHHHHHHHhcCCcccCCC-CCCeEEEe
Confidence 99999999999999998876411 14555554
No 13
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=2.6e-33 Score=209.94 Aligned_cols=175 Identities=18% Similarity=0.219 Sum_probs=142.3
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 6 SRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 6 ~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
+++|||+|||+ ++++++|+++|++||.|..|.+..+. +|||||+|.++++|..|+..|||..+.|+.|.|.++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 78999999999 99999999999999999999997654 7999999999999999999999999999999999998653
Q ss_pred CCCCCCCCC-----CC--------CCCCC--CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCcc
Q 026659 85 RHSSSMDRY-----SS--------YSSGG--SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGM 148 (235)
Q Consensus 85 ~~~~~~~~~-----~~--------~~~~~--~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~ 148 (235)
......... .. +.... .......+..+|+|+|||..+++++|.++|.+|| .|..+.+..+. .|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-Cc
Confidence 222111000 00 00000 1111234578999999999999999999999999 99999886643 57
Q ss_pred EEEEEEcCHHHHHHHHHHhcCCeec-CccceeEEEEeecC
Q 026659 149 TGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYD 187 (235)
Q Consensus 149 ~~fV~f~~~~~A~~a~~~l~g~~~~-g~~~~~~i~v~~~~ 187 (235)
+|||+|.+.++|.+|+..|||..+. | +.|++...+
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a~ 195 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSK 195 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCSSC----CSCCEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCC----CeEEEEeec
Confidence 9999999999999999999999998 7 566666554
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=7.3e-33 Score=202.92 Aligned_cols=155 Identities=23% Similarity=0.406 Sum_probs=136.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~----G-------~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (235)
+++++|||+|||+++|+++|+++|++| | .|..+.+. .++|||||+|.++++|.+|+ .|||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 478999999999999999999999999 6 67777665 34899999999999999999 799999999
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----cc
Q 026659 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GM 148 (235)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~ 148 (235)
+.|.|.++..... .....+|+|+|||..+++++|.++|.+||.|..+.+..+.. .|
T Consensus 78 ~~i~v~~~~~~~~--------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 78 QSLKIRRPHDYQP--------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp EECEEECCSSCCC--------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred ceeeecCCcccCC--------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 9999998764332 12357899999999999999999999999999999998853 46
Q ss_pred EEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 149 ~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
+|||+|.+.++|.+|+..|||..+.| +.|.|..+
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~A 171 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRA 171 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECC----eEEEEEeC
Confidence 99999999999999999999999999 67777653
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=8.6e-34 Score=206.89 Aligned_cols=159 Identities=19% Similarity=0.381 Sum_probs=139.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
+++++|||+|||+++|+++|+++|++||+|.+|.+.. ++.++|||||+|.++++|.+|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999954 578899999999999999999994 67899999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcC
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~ 156 (235)
.+... .....+|||+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+
T Consensus 79 ~~~~~--------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 138 (167)
T 2cjk_A 79 IPRDE--------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 138 (167)
T ss_dssp CCHHH--------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESS
T ss_pred cchhh--------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECC
Confidence 64321 12346899999999999999999999999999999987743 4799999999
Q ss_pred HHHHHHHHHHhcCCeecCccceeEEEEeecCCC
Q 026659 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 157 ~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
.++|.+|++ ++|..+.| +.|.|..+.++
T Consensus 139 ~~~a~~A~~-~~~~~~~g----~~i~V~~a~pk 166 (167)
T 2cjk_A 139 ADAVDRVCQ-NKFIDFKD----RKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHHH-CSEECSSS----SCEEEEECCCC
T ss_pred HHHHHHHHh-CCCEEeCC----eEEEEeecCCC
Confidence 999999997 89999999 68888877553
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=9.8e-32 Score=212.21 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=146.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999999998853 5778999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCC-CHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcC
Q 026659 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTS 156 (235)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~ 156 (235)
....... ......+|||+|||..+ ++++|.++|..||.|..+.+..+.. .|+|||+|.+
T Consensus 173 ~~~~~~~-----------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 173 DAGQLTP-----------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp CGGGCCT-----------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred CCCCCCc-----------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 7643321 12456789999999995 9999999999999999999998753 4699999999
Q ss_pred HHHHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 157 ~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
.++|.+|+..|||..+.| +.|+|....+..
T Consensus 236 ~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~~ 265 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGG----SHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHHHHHHTTCEETT----EECEEEECCSSS
T ss_pred HHHHHHHHHHhCCCccCC----eEEEEEEecCCC
Confidence 999999999999999999 788888776544
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.7e-32 Score=213.95 Aligned_cols=167 Identities=16% Similarity=0.279 Sum_probs=142.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+.+++++|.++|+.|| .|..|.+.. .+.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999954 35789999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEEecCC-----ccEEEEEEc
Q 026659 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYT 155 (235)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~-----~~~~fV~f~ 155 (235)
+....... ........+|||.|||.. +++++|.++|.+||.|..+.+..+.. .|+|||+|.
T Consensus 196 ~~~~~~~~-------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 196 PLEKSKRT-------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CC----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCcccccc-------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 65432211 123345679999999999 99999999999999999999987654 579999999
Q ss_pred CHHHHHHHHHHhcCCeecCccceeEEEEeecCCC
Q 026659 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 156 ~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
+.++|.+|+ .|||..+.| +.|.|..+.++
T Consensus 263 ~~~~A~~A~-~l~g~~~~g----~~i~V~~a~~k 291 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGN----REISVSLADKK 291 (292)
T ss_dssp SHHHHHHHG-GGTTEEETT----EEEEEEECCCC
T ss_pred CHHHHHHHH-HhcCCEECC----cEEEEEEecCC
Confidence 999999999 999999999 78888887654
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=2.2e-31 Score=207.63 Aligned_cols=157 Identities=23% Similarity=0.295 Sum_probs=136.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|||+++|+++|.++|+.||.|..|.+.. ++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 3568999999999999999999999999999999964 489999999999999999999999999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHH
Q 026659 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDM 160 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A 160 (235)
..+|||+|||..+++++|.++|..||.|..+.+..+.. .|+|||+|.+.++|
T Consensus 96 -------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 96 -------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp -------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred -------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 34899999999999999999999999999999998843 46999999999999
Q ss_pred HHHHHHhcCCeecCccceeEEEEeecCCC
Q 026659 161 KYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
..|+..||+..+......+.+.|......
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999996554442122256777665543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=7.7e-31 Score=207.07 Aligned_cols=152 Identities=24% Similarity=0.281 Sum_probs=138.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.++++|||+|||+++|+++|.++|+.|| |..+.+ +.++|||||+|.++++|..|+..|||..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 4689999999999999999999999999 999988 4568999999999999999999999999999999999854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHH
Q 026659 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDD 159 (235)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~ 159 (235)
...+|||+|||..+++++|.++|..||.|..+.+..+.. .|+|||+|.+.++
T Consensus 94 ------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 94 ------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp ------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred ------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 235899999999999999999999999999999998754 4699999999999
Q ss_pred HHHHHHHhcCCeecCccceeEEEEeecCCC
Q 026659 160 MKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 160 A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
|..|+..|||..+.| ..|.+......
T Consensus 150 a~~A~~~l~~~~~~g----~~i~v~~a~~~ 175 (284)
T 3smz_A 150 AARAKSDLLGKPLGP----RTLYVHWTDAG 175 (284)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECCGG
T ss_pred HHHHHHHhCCCEeCC----cEEEEEECCCC
Confidence 999999999999999 67888776543
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6.1e-31 Score=208.42 Aligned_cols=155 Identities=21% Similarity=0.288 Sum_probs=135.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
++.++|||+|||+++|+++|+++|+.||+|..|.+..+ ..++|||||+|.++++|.+|+. |||..+.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 56899999999999999999999999999999999653 3358999999999999999996 99999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEecC---CccEEEEEEcCHH
Q 026659 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR---GGMTGIVDYTSYD 158 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~---~~~~~fV~f~~~~ 158 (235)
..+|||+|||..+++++|.++|..|| .|..+.+..+. ..|||||+|.+.+
T Consensus 117 --------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 117 --------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp --------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH
T ss_pred --------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 35899999999999999999999999 99999998765 4579999999999
Q ss_pred HHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 159 ~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
+|..|+..|||..+.| ..|.|....+..
T Consensus 171 ~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 198 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEG----YTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECCCC-
T ss_pred HHHHHHHHhCCCEeCC----cEEEEEECCCCc
Confidence 9999999999999999 778887765443
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.93 E-value=1.2e-25 Score=153.52 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
+++|||+|||+++|+++|+++|++||.|.+|.|.. .+.++|||||+|.+.++|++|+..|||..+.|+.|.|.++....
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 67899999999999999999999999999999954 34578999999999999999999999999999999999987644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 026659 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (235)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 125 (235)
.... ..........+|||.|||+.+|++.
T Consensus 85 ~~~~------------~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 85 EREA------------ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp C----------------------------------------
T ss_pred cccc------------ccccccCCCCceEeCCCCCCccccc
Confidence 3221 0111123345799999999998763
No 22
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.90 E-value=7.6e-24 Score=144.64 Aligned_cols=105 Identities=30% Similarity=0.437 Sum_probs=95.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
..++++|||+|||+++|+++|.++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45789999999999999999999999999999999988888899999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC
Q 026659 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 135 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~ 135 (235)
.... .+++...++++|.++|.+||.
T Consensus 85 ~~~~----------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF----------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT----------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh----------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4432 236677889999999999984
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=139.33 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.++++|++|+..|||..+.|+.|.|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 568999999999999999999999999999999954 57889999999999999999999999999999999999987
Q ss_pred C
Q 026659 82 G 82 (235)
Q Consensus 82 ~ 82 (235)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 24
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.7e-22 Score=145.62 Aligned_cols=139 Identities=17% Similarity=0.063 Sum_probs=103.3
Q ss_pred CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCC
Q 026659 42 PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA 121 (235)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 121 (235)
..++|||||+|.++++|++|+..+++....+..+.+........... ...............+|||+|||..+
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-------GSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-------CCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-------cccccccccCCCCCCEEEEeCCCCCC
Confidence 46799999999999999999988876443333333322111000000 00001112223456799999999999
Q ss_pred CHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCCCCC
Q 026659 122 SWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRRS 191 (235)
Q Consensus 122 t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~s 191 (235)
++++|.++|.+||.|..+.+..+. ..|||||+|.+.++|..|+..|||..+.| +.|+|..+...+.
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYGRP 152 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCSSC
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCCCC
Confidence 999999999999999999998874 34799999999999999999999999999 7888888766543
No 25
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=2.8e-22 Score=143.28 Aligned_cols=139 Identities=19% Similarity=0.133 Sum_probs=111.4
Q ss_pred CCCCCCeEEEEecCHHHHHHHHHhc-CCCccCCceEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCC
Q 026659 41 PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPS 119 (235)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 119 (235)
....+|+++|+|.+.++|++|+..| ||..+.| .|.+.++......... ................++|||+|||.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEG----SHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECS----SSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccc----cccccccccccCCCCCCEEEEeCCCC
Confidence 3456899999999999999999999 9999999 9999987643211100 00001111223345668999999999
Q ss_pred CCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCCC
Q 026659 120 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 120 ~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
.+++++|.++|.+||.|..+.+..+ ..|||||+|.+.++|..|+..|||..+.| +.|+|..+.++
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 148 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG----CRVRVELSNGE 148 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS----SCCEEEECCCC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcCCC
Confidence 9999999999999999999999887 56799999999999999999999999999 67777776554
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.6e-22 Score=134.00 Aligned_cols=83 Identities=59% Similarity=1.050 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
..+.++|||+|||+++|+++|+++|++||.|..|.+..++.+++||||+|.+.++|++|+..||+..|.|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 45789999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred CCC
Q 026659 83 GRR 85 (235)
Q Consensus 83 ~~~ 85 (235)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 27
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=133.69 Aligned_cols=100 Identities=41% Similarity=0.583 Sum_probs=83.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (235)
++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|+..|||..+.|+.|.|.++.+....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999766 7899999999999999999999999999999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCC
Q 026659 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLP 118 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 118 (235)
... +..........+|||+||+
T Consensus 79 ~~~----------~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRF----------DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCC----------CSCCCSCCCCSCCCSCCCC
T ss_pred ccC----------CCCCccccCCCceecCCCC
Confidence 211 1111122345679999986
No 28
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=132.97 Aligned_cols=85 Identities=27% Similarity=0.492 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
|+..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999999965 67889999999999999999999999999999999999
Q ss_pred eccCCCC
Q 026659 79 LAHGGRR 85 (235)
Q Consensus 79 ~~~~~~~ 85 (235)
++.....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986543
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=4.7e-22 Score=134.15 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+.++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999954 578899999999999999999999999999999999999
Q ss_pred ccCC
Q 026659 80 AHGG 83 (235)
Q Consensus 80 ~~~~ 83 (235)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=128.97 Aligned_cols=84 Identities=31% Similarity=0.467 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..++++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999954 578899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 026659 80 AHGGRRH 86 (235)
Q Consensus 80 ~~~~~~~ 86 (235)
+.+....
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876543
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.6e-22 Score=131.23 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC--CccCCceEEEEec
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~i~v~~~ 80 (235)
..+.++|||+|||+++|+++|+++|++||+|.+|.+..+ +|||||+|.+.++|+.|+..|++ ..+.|+.|.|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 357899999999999999999999999999999999864 89999999999999999998864 7899999999999
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
..+...
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 865543
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=131.11 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcC-CCccCCceEEEEec
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD-GYNFDGYRLRVELA 80 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~-g~~~~g~~i~v~~~ 80 (235)
+++|||+|||+++|+++|+++|++|| +|.+|.+.. ++.++|||||+|.++++|++|+..++ +..+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999854 57899999999999999999998774 56799999999999
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 33
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=134.71 Aligned_cols=82 Identities=20% Similarity=0.384 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
..++++|||+|||+.+++++|+ ++|++||+|.+|.+..++.++|||||+|.+.++|..|+..|||..+.|+.|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3578999999999999999876 699999999999998888999999999999999999999999999999999999
Q ss_pred eccCCC
Q 026659 79 LAHGGR 84 (235)
Q Consensus 79 ~~~~~~ 84 (235)
|+....
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998643
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=130.14 Aligned_cols=84 Identities=24% Similarity=0.400 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec------CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~------~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (235)
+.+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 56899999999999999999999999999999999954 336789999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 026659 77 VELAHGGRRH 86 (235)
Q Consensus 77 v~~~~~~~~~ 86 (235)
|.++......
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999875543
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.7e-21 Score=126.22 Aligned_cols=84 Identities=29% Similarity=0.430 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
+.++++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35789999999999999999999999999999999965 477899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 026659 80 AHGGRRH 86 (235)
Q Consensus 80 ~~~~~~~ 86 (235)
+.+....
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 36
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.87 E-value=7.7e-22 Score=134.44 Aligned_cols=80 Identities=55% Similarity=1.010 Sum_probs=68.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccc-eeEEEEe
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS-RSYVRVR 184 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~-~~~i~v~ 184 (235)
....++|||+|||..+++++|.++|.+||.|..+.+..+ +||||+|.+.++|.+||+.|||..+.|+.+ ..++++.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 356789999999999999999999999999999999877 799999999999999999999999999654 4567877
Q ss_pred ecCC
Q 026659 185 EYDS 188 (235)
Q Consensus 185 ~~~~ 188 (235)
...+
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 7654
No 37
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=1.1e-21 Score=124.03 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|++|++.||+..+.|+.|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999965 69999999999999999999999999999999999984
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=2.1e-21 Score=128.13 Aligned_cols=80 Identities=29% Similarity=0.625 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
|+++|||+|||.++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 679999999999999999999999999999999954 47789999999999999999999999999999999999998
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=4.8e-21 Score=130.67 Aligned_cols=84 Identities=24% Similarity=0.420 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999999999999954 5678899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 026659 81 HGGRRHS 87 (235)
Q Consensus 81 ~~~~~~~ 87 (235)
.......
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8765443
No 40
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=129.02 Aligned_cols=83 Identities=40% Similarity=0.583 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4689999999999999999999999999999999964 4778999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
......
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 875543
No 41
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.8e-21 Score=127.67 Aligned_cols=84 Identities=30% Similarity=0.442 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..+.++|||+|||+++++++|+++|++||+|..|.+..+ ..++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 457899999999999999999999999999999999653 4468999999999999999999999999999999999998
Q ss_pred CCCCC
Q 026659 82 GGRRH 86 (235)
Q Consensus 82 ~~~~~ 86 (235)
+....
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 75543
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=8e-22 Score=129.18 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCC----ccCCce
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP--IVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGYR 74 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~----~~~g~~ 74 (235)
....+|||+|||+++|+++|+++|++||. |.+|.+.. ++.++|||||+|.++++|.+|+..|||. .++|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 56789999999999999999999999995 67888844 5789999999999999999999999997 489999
Q ss_pred EEEEeccC
Q 026659 75 LRVELAHG 82 (235)
Q Consensus 75 i~v~~~~~ 82 (235)
|.|.+|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.9e-21 Score=126.70 Aligned_cols=84 Identities=24% Similarity=0.491 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+. ||+..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999964 46789999999999999999999 999999999999999
Q ss_pred ccCCCCCC
Q 026659 80 AHGGRRHS 87 (235)
Q Consensus 80 ~~~~~~~~ 87 (235)
+.++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 98765443
No 44
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=126.87 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCc--cCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~--~~g~~i~v~~~~ 81 (235)
.|+++|||+|||.++|+++|.++|++||.|.++.+.. .+|||||+|.+.++|.+|+..|++.. +.|+.|.|.+++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 5899999999999999999999999999999999974 48999999999999999999999875 789999999998
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
.+.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.2e-21 Score=127.25 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDI-DLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i-~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
+.++++|||+|||+++++++|+++|++||.|..+ .+.. ++.++|||||+|.++++|++|+..|||..+.|+.|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999999999999999999999999999999 8854 57789999999999999999999999999999999999
Q ss_pred eccCCCC
Q 026659 79 LAHGGRR 85 (235)
Q Consensus 79 ~~~~~~~ 85 (235)
++.+...
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9986554
No 46
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=127.37 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 4 RSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
.+.++|||+|||+++++++|+ ++|++||+|..|.+..+...++||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 367899999999999999999 9999999999999976544489999999999999999999999999999999999
Q ss_pred ccCCC
Q 026659 80 AHGGR 84 (235)
Q Consensus 80 ~~~~~ 84 (235)
+.+..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97654
No 47
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=128.99 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45789999999999999999999999999999999954 56778999999999999999999999999999999999998
Q ss_pred CCCCC
Q 026659 82 GGRRH 86 (235)
Q Consensus 82 ~~~~~ 86 (235)
+....
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 48
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.86 E-value=7.4e-22 Score=130.58 Aligned_cols=84 Identities=26% Similarity=0.513 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 026659 1 MSSRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (235)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (235)
|+..++++|||+|||+++++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..+.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999999 9999999999999987777899999999999999999999999999999999
Q ss_pred EEeccCCC
Q 026659 77 VELAHGGR 84 (235)
Q Consensus 77 v~~~~~~~ 84 (235)
|.++.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998654
No 49
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=2.5e-21 Score=126.79 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46789999999999999999999999999999999954 66789999999999999999999999999999999999998
Q ss_pred CCCC
Q 026659 82 GGRR 85 (235)
Q Consensus 82 ~~~~ 85 (235)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 50
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.7e-21 Score=129.09 Aligned_cols=84 Identities=32% Similarity=0.519 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 4789999999999999999999999999999999954 4778999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 026659 81 HGGRRHS 87 (235)
Q Consensus 81 ~~~~~~~ 87 (235)
.+.....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8765443
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=2.4e-21 Score=124.92 Aligned_cols=79 Identities=33% Similarity=0.541 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+.++|||+|||+++++++|+++|++||+|..+.+. .++.++|||||+|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3578999999999999999999999999999999984 3567899999999999999999999999999999999999
Q ss_pred cc
Q 026659 80 AH 81 (235)
Q Consensus 80 ~~ 81 (235)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 52
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.1e-21 Score=128.42 Aligned_cols=82 Identities=29% Similarity=0.447 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5789999999999999999999999999999999954 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.+...
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87554
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=2.8e-21 Score=124.05 Aligned_cols=79 Identities=22% Similarity=0.397 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
+++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999953 577899999999999999999999999999999999999986
Q ss_pred CC
Q 026659 83 GR 84 (235)
Q Consensus 83 ~~ 84 (235)
..
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 54
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=130.12 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC--CccCCceEEEEec
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~i~v~~~ 80 (235)
..++++|||+|||+++|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|.+|+..|++ ..+.|+.|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 457899999999999999999999999999999999754 79999999999999999998874 6899999999999
Q ss_pred cCCCCCC
Q 026659 81 HGGRRHS 87 (235)
Q Consensus 81 ~~~~~~~ 87 (235)
.......
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8665443
No 55
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=125.97 Aligned_cols=80 Identities=26% Similarity=0.432 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4688999999999999999999999999999999954 5678899999999999999999999999999999999998
Q ss_pred cCC
Q 026659 81 HGG 83 (235)
Q Consensus 81 ~~~ 83 (235)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 56
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=2.1e-20 Score=154.71 Aligned_cols=84 Identities=33% Similarity=0.574 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999953 6788999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 026659 81 HGGRRHS 87 (235)
Q Consensus 81 ~~~~~~~ 87 (235)
.+.....
T Consensus 180 ~~~~~~~ 186 (437)
T 3pgw_S 180 RGRTVKG 186 (437)
T ss_pred CCCCCCC
Confidence 8765433
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.5e-21 Score=127.97 Aligned_cols=82 Identities=33% Similarity=0.579 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.++++|.+|+..|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4789999999999999999999999999999999955 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86554
No 58
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.85 E-value=1.2e-20 Score=126.09 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467999999999999999999999999999999987 689999999999999999999999999999999999876
Q ss_pred CCCC
Q 026659 84 RRHS 87 (235)
Q Consensus 84 ~~~~ 87 (235)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5543
No 59
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=125.94 Aligned_cols=83 Identities=24% Similarity=0.440 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.+.++|||+|||+++|+++|+++|++||.|..|.+..+ ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 57899999999999999999999999999999999653 34799999999999999999999999999999999999987
Q ss_pred CCCC
Q 026659 83 GRRH 86 (235)
Q Consensus 83 ~~~~ 86 (235)
....
T Consensus 93 ~~~~ 96 (103)
T 2cq3_A 93 RVMT 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 60
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=127.77 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 35789999999999999999999999999999999954 478899999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 026659 80 AHGGRR 85 (235)
Q Consensus 80 ~~~~~~ 85 (235)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 61
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-21 Score=128.80 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCC--ccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~i~v~~ 79 (235)
..++++|||+|||+ ++|+++|+++|++||.|.+|.|..+ ++||||+|.+.++|..|+..||+. .|.|+.|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 35789999999999 9999999999999999999999753 699999999999999999999864 58999999999
Q ss_pred ccCCCC
Q 026659 80 AHGGRR 85 (235)
Q Consensus 80 ~~~~~~ 85 (235)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 986543
No 62
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3e-21 Score=128.15 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce---
Q 026659 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV-DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--- 74 (235)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~--- 74 (235)
+..++++|||+|||+++++++|+++|++||+|. .|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 356899999999999999999999999999999 999854 5678899999999999999999999999999999
Q ss_pred -EEEEeccCCC
Q 026659 75 -LRVELAHGGR 84 (235)
Q Consensus 75 -i~v~~~~~~~ 84 (235)
|.|.++.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999988654
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.9e-21 Score=129.14 Aligned_cols=83 Identities=34% Similarity=0.547 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4689999999999999999999999999999999954 5678899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
.+....
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=128.42 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
..++++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 35789999999999999999999999999999999954 4667899999999999999999999999999999999998
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 65
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=127.33 Aligned_cols=82 Identities=24% Similarity=0.445 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec----CCCCCCeEEEEecCHHHHHHHHHhc-CCCccCCceEEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVE 78 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~----~~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~~i~v~ 78 (235)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..| ||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 5789999999999999999999999999999999943 5678999999999999999999999 9999999999999
Q ss_pred eccCCCC
Q 026659 79 LAHGGRR 85 (235)
Q Consensus 79 ~~~~~~~ 85 (235)
++.+...
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987554
No 66
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=126.94 Aligned_cols=81 Identities=23% Similarity=0.466 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4689999999999999999999999999999999954 46778999999999999999999999999999999999998
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
++.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 67
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=125.20 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4679999999999999999999999999999999955 4678999999999999999999999999999999999997
Q ss_pred c
Q 026659 81 H 81 (235)
Q Consensus 81 ~ 81 (235)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=5.1e-21 Score=130.54 Aligned_cols=83 Identities=19% Similarity=0.420 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4679999999999999999999999999999999954 5678899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
.+....
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 876543
No 69
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.7e-21 Score=125.36 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhc--CCCccCCceEEEEec
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELA 80 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~i~v~~~ 80 (235)
..++++|||+|||+++|+++|+++|++||.|..|.+..+ +|||||+|.+.++|..|+..| ++..+.|+.|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 357899999999999999999999999999999988754 899999999999999999977 467899999999999
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 86554
No 70
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=122.52 Aligned_cols=79 Identities=33% Similarity=0.631 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
..+.++|||+|||+++|+++|+++|++||+|..|.+. ++||||+|.+.++|++|+..|||..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4578999999999999999999999999999999998 79999999999999999999999999999999999987
Q ss_pred CCCC
Q 026659 83 GRRH 86 (235)
Q Consensus 83 ~~~~ 86 (235)
....
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=6.9e-21 Score=123.59 Aligned_cols=81 Identities=27% Similarity=0.516 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CC-CCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PR-PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~---~~-~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
...++|||+|||+++|+++|.++|++||.|..+.+..+ +. ++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 36789999999999999999999999999999999543 23 799999999999999999999999999999999999
Q ss_pred ccCCC
Q 026659 80 AHGGR 84 (235)
Q Consensus 80 ~~~~~ 84 (235)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97543
No 72
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=1.3e-20 Score=126.63 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCcc---CCceEE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLR 76 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~i~ 76 (235)
..+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45789999999999999999999999999999999965 477899999999999999999999999887 899999
Q ss_pred EEeccCCCC
Q 026659 77 VELAHGGRR 85 (235)
Q Consensus 77 v~~~~~~~~ 85 (235)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987554
No 73
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.1e-20 Score=126.83 Aligned_cols=83 Identities=25% Similarity=0.350 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCC---ceEEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG---YRLRVE 78 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~i~v~ 78 (235)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999954 56778999999999999999999999999988 999999
Q ss_pred eccCCCCC
Q 026659 79 LAHGGRRH 86 (235)
Q Consensus 79 ~~~~~~~~ 86 (235)
++......
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99876543
No 74
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=122.83 Aligned_cols=79 Identities=35% Similarity=0.625 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
..+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..+.|+.|.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4578999999999999999999999999999999998 56999999999999999999999999999999999987
Q ss_pred CCCC
Q 026659 83 GRRH 86 (235)
Q Consensus 83 ~~~~ 86 (235)
....
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 75
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.7e-20 Score=124.23 Aligned_cols=82 Identities=55% Similarity=0.987 Sum_probs=73.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccc-eeEEE
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS-RSYVR 182 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~-~~~i~ 182 (235)
++....++|||+|||..+++++|.++|.+||.|..+.+..+ +||||+|.+.++|.+||+.|||..+.|+.. ...|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 44566789999999999999999999999999999999987 799999999999999999999999998433 56888
Q ss_pred EeecCC
Q 026659 183 VREYDS 188 (235)
Q Consensus 183 v~~~~~ 188 (235)
|..+..
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 888765
No 76
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=126.50 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC----CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
..+.++|||+|||+++|+++|+++|+.|| |..|.+..+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35789999999999999999999999999 999999653 678999999999999999999 899999999999999
Q ss_pred eccCCCC
Q 026659 79 LAHGGRR 85 (235)
Q Consensus 79 ~~~~~~~ 85 (235)
++.+...
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987554
No 77
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.6e-21 Score=128.41 Aligned_cols=81 Identities=25% Similarity=0.502 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.++++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4578899999999999999999999999999999964 4778999999999999999999999999999999999999
Q ss_pred cCCC
Q 026659 81 HGGR 84 (235)
Q Consensus 81 ~~~~ 84 (235)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7643
No 78
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=125.91 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCC--ccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~i~v~~~~ 81 (235)
.++++|||+|||+++++++|+++|++||.|..|.+... +|||||+|.+.++|.+|+..|++. .+.|+.|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 47899999999999999999999999999999998753 899999999999999999988764 5899999999998
Q ss_pred CCCC
Q 026659 82 GGRR 85 (235)
Q Consensus 82 ~~~~ 85 (235)
.+..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6554
No 79
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=126.76 Aligned_cols=83 Identities=20% Similarity=0.430 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcC------CCccCCce
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD------GYNFDGYR 74 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~------g~~~~g~~ 74 (235)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|| +..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 4689999999999999999999999999999999964 46789999999999999999999999 99999999
Q ss_pred EEEEeccCCCCC
Q 026659 75 LRVELAHGGRRH 86 (235)
Q Consensus 75 i~v~~~~~~~~~ 86 (235)
|.|.++.+....
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999876543
No 80
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=125.33 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCC-----ceEEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-----YRLRVE 78 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~~i~v~ 78 (235)
++.++|||+|||+++|+++|+++|++||+|..|.+..+ |||||+|.+.++|++|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 46799999999999999999999999999999999865 999999999999999999999999999 999999
Q ss_pred eccCCCC
Q 026659 79 LAHGGRR 85 (235)
Q Consensus 79 ~~~~~~~ 85 (235)
++.+...
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9987544
No 81
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=123.85 Aligned_cols=78 Identities=27% Similarity=0.503 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccC--CceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~i~v~~~~ 81 (235)
.++++|||+|||+++|+++|+++|++||.|..|.+... +|||||+|.+.++|++|+..|||..+. |+.|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 46799999999999999999999999999999998753 789999999999999999999999999 9999999998
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 82
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=1.2e-21 Score=127.70 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=67.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+|||+|||+++|+++|+++|++|| .|..+.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999854 67889999999999999999999999999999999999998
Q ss_pred CCCC
Q 026659 82 GGRR 85 (235)
Q Consensus 82 ~~~~ 85 (235)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 83
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=121.69 Aligned_cols=78 Identities=31% Similarity=0.570 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
..+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..+.|+.|.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3578999999999999999999999999999999998 56999999999999999999999999999999999987
Q ss_pred CCC
Q 026659 83 GRR 85 (235)
Q Consensus 83 ~~~ 85 (235)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 84
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=7.5e-21 Score=125.21 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
..+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 35679999999999999999999999999999999954 4677899999999999999999999999999999999998
Q ss_pred cC
Q 026659 81 HG 82 (235)
Q Consensus 81 ~~ 82 (235)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 85
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1e-20 Score=127.99 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678899999999999999999999999999999953 5778999999999999999999999999999999999999
Q ss_pred cCCC
Q 026659 81 HGGR 84 (235)
Q Consensus 81 ~~~~ 84 (235)
.+..
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7643
No 86
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=9.4e-21 Score=127.54 Aligned_cols=81 Identities=27% Similarity=0.479 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+.++|||+|||+.+++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35789999999999999999999999999999999953 567889999999999999999999999999999999999
Q ss_pred ccCC
Q 026659 80 AHGG 83 (235)
Q Consensus 80 ~~~~ 83 (235)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8754
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=8.2e-21 Score=131.81 Aligned_cols=81 Identities=35% Similarity=0.575 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.++++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5789999999999999999999999999999999964 4688999999999999999999999999999999999999
Q ss_pred cCCC
Q 026659 81 HGGR 84 (235)
Q Consensus 81 ~~~~ 84 (235)
.+++
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8654
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=125.75 Aligned_cols=78 Identities=15% Similarity=0.398 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++|+++|.++|++||+|.+|.|.. .+.++|||||+|.++++|..|+. ++|..+.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 4578999999999999999999999999999999964 36789999999999999999999 99999999999999876
Q ss_pred C
Q 026659 82 G 82 (235)
Q Consensus 82 ~ 82 (235)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 89
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=1e-20 Score=127.25 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
...++|||+|||+++++++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4568999999999999999999999999 999998853 35799999999999999999999999999999999999875
Q ss_pred C
Q 026659 83 G 83 (235)
Q Consensus 83 ~ 83 (235)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 90
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8e-21 Score=125.08 Aligned_cols=79 Identities=34% Similarity=0.549 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.++++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 4678999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred cC
Q 026659 81 HG 82 (235)
Q Consensus 81 ~~ 82 (235)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 91
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=2.4e-21 Score=128.71 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCC-c
Q 026659 4 RSSRTLYVGNLPG------DTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-Y 73 (235)
Q Consensus 4 ~~~~~l~v~nl~~------~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~ 73 (235)
..+++|||+|||+ ++++++|.++|++||+|..|.++. ++.++|||||+|.+.++|++|+..|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3578999999999 999999999999999999999953 57889999999999999999999999999999 9
Q ss_pred eEEEEeccC
Q 026659 74 RLRVELAHG 82 (235)
Q Consensus 74 ~i~v~~~~~ 82 (235)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999874
No 92
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=127.01 Aligned_cols=80 Identities=25% Similarity=0.470 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.+.++|||+|||.++|+++|+++|++||.|..|.+.. .+.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999954 345799999999999999999999999999999999999875
Q ss_pred C
Q 026659 83 G 83 (235)
Q Consensus 83 ~ 83 (235)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 93
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=127.26 Aligned_cols=82 Identities=27% Similarity=0.468 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--------DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--------~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (235)
.+.++|||+|||+++|+++|+++|++||.|. .|.+.. ++.++|||||+|.+.++|++|+..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4789999999999999999999999999998 588853 57889999999999999999999999999999
Q ss_pred ceEEEEeccCCCC
Q 026659 73 YRLRVELAHGGRR 85 (235)
Q Consensus 73 ~~i~v~~~~~~~~ 85 (235)
+.|.|.++.....
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999987554
No 94
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2.1e-20 Score=124.89 Aligned_cols=82 Identities=27% Similarity=0.516 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+.++|||+|||+++++++|+++|++|| |..|.+.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 35789999999999999999999999997 99999954 4678999999999999999999 7999999999999999
Q ss_pred ccCCCCC
Q 026659 80 AHGGRRH 86 (235)
Q Consensus 80 ~~~~~~~ 86 (235)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9875543
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-20 Score=124.15 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-c---CCCCCCeEEEEecCHHHHHHHHHhcC--CCccCCceE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLK-I---PPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRL 75 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~i~~~-~---~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~i 75 (235)
+.+.++|||+|||+++|+++|+++|++||. |..|.+. . ++.++|||||+|.+.++|..|+..|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 457899999999999999999999999998 9999986 3 45789999999999999999999996 589999999
Q ss_pred EEEeccCCCC
Q 026659 76 RVELAHGGRR 85 (235)
Q Consensus 76 ~v~~~~~~~~ 85 (235)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 96
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.2e-20 Score=124.71 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|||+++++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..|||..+.|+.|.|.++...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 46889999999999999999999999999999999765 899999999999999999999999999999999999875
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 100 ~~ 101 (109)
T 1x4g_A 100 PD 101 (109)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 97
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.1e-20 Score=129.44 Aligned_cols=79 Identities=20% Similarity=0.450 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999954 478899999999999999999999999999999999998
Q ss_pred cc
Q 026659 80 AH 81 (235)
Q Consensus 80 ~~ 81 (235)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 98
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=125.18 Aligned_cols=78 Identities=29% Similarity=0.435 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (235)
.+.++|||+|||+++++++|+++|++||.|.. +.+.. ++.++|||||+|.+.++|++|+..|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 47899999999999999999999999999999 88854 57789999999999999999999999999999
Q ss_pred ceEEEEecc
Q 026659 73 YRLRVELAH 81 (235)
Q Consensus 73 ~~i~v~~~~ 81 (235)
+.|.|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 99
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.8e-20 Score=129.85 Aligned_cols=83 Identities=24% Similarity=0.482 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.++++|||+|||+++|+++|.++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999953 5778999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
.+....
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 865543
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=125.63 Aligned_cols=80 Identities=28% Similarity=0.422 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEe-cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCc-eE
Q 026659 4 RSSRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLK-IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RL 75 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~------t~~~l~~~F~~~G~i~~i~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~i 75 (235)
..+++|||+|||+.+ |+++|.++|++||.|..|.+. .++.++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 357899999999999 789999999999999999985 4678899999999999999999999999999999 99
Q ss_pred EEEeccCC
Q 026659 76 RVELAHGG 83 (235)
Q Consensus 76 ~v~~~~~~ 83 (235)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 101
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=2.8e-20 Score=120.93 Aligned_cols=78 Identities=24% Similarity=0.474 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+ .|||..+.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999953 5788999999999999999999 799999999999999987
Q ss_pred CC
Q 026659 82 GG 83 (235)
Q Consensus 82 ~~ 83 (235)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 102
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.7e-21 Score=127.49 Aligned_cols=80 Identities=25% Similarity=0.276 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC--CccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~i~v~~ 79 (235)
..++++|||+|||++ +|+++|+++|++||+|.+|.|.. ++|||||+|.+.++|..|+..||+ ..+.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 467899999999998 99999999999999999999974 489999999999999999998864 569999999999
Q ss_pred ccCCCC
Q 026659 80 AHGGRR 85 (235)
Q Consensus 80 ~~~~~~ 85 (235)
+.....
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 986554
No 103
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.9e-21 Score=128.41 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEecCC------CCCCeEEEEecCHHHHHHHHHhcCCCccCCce
Q 026659 4 RSSRTLYVGNLPGDTRMREVE---DLFYKYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~i~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (235)
.+.++|||+|||+++++++|. ++|++||+|..|.+..+. .++|||||+|.++++|++|+..|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 367899999999999999999 999999999999996532 56699999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 026659 75 LRVELAHGGR 84 (235)
Q Consensus 75 i~v~~~~~~~ 84 (235)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998655
No 104
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=3.7e-20 Score=122.21 Aligned_cols=75 Identities=25% Similarity=0.503 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.++++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 5789999999998 99999999999999999999995 89999999999999999999999999999999999875
Q ss_pred C
Q 026659 83 G 83 (235)
Q Consensus 83 ~ 83 (235)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 105
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=9.1e-21 Score=121.01 Aligned_cols=72 Identities=29% Similarity=0.494 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEe-cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCc-eEEE
Q 026659 6 SRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLK-IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRV 77 (235)
Q Consensus 6 ~~~l~v~nl~~~~------t~~~l~~~F~~~G~i~~i~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~i~v 77 (235)
+++|||+|||+.+ ++++|+++|++||+|..|.+. .++.++|||||+|.+.++|.+|+..|||..+.|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 779999999999999999985 4678899999999999999999999999999999 8875
No 106
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.8e-20 Score=123.53 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 3 ~~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
..++++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|+.|+..|||..+.|+.|.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 35789999999998 99999999999999999999996 7999999999999999999999999999999999998
Q ss_pred CCCC
Q 026659 82 GGRR 85 (235)
Q Consensus 82 ~~~~ 85 (235)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6544
No 107
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=126.82 Aligned_cols=82 Identities=23% Similarity=0.412 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i----~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
.++++|||+|||+++|+++|+++|++||.| ..+.+. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 455555 788899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 026659 80 AHGGRRH 86 (235)
Q Consensus 80 ~~~~~~~ 86 (235)
+.+....
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 108
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=124.35 Aligned_cols=83 Identities=22% Similarity=0.331 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCc-cCCceEEEE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDGYRLRVE 78 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g~~i~v~ 78 (235)
..++++|||+|||+++|+++|+++|++ ||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||.. +.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 457899999999999999999999999 99999999954 57789999999999999999999999999 999999999
Q ss_pred eccCCCC
Q 026659 79 LAHGGRR 85 (235)
Q Consensus 79 ~~~~~~~ 85 (235)
++.+...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976544
No 109
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=2.2e-20 Score=125.72 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4689999999999999999999999999999999853 56778999999999999999999999999999999999975
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=130.40 Aligned_cols=83 Identities=31% Similarity=0.587 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4678999999999999999999999999999999954 4677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
......
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876544
No 111
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=2.8e-20 Score=120.42 Aligned_cols=77 Identities=27% Similarity=0.551 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 45789999999999999999999999999999999953 57789999999999999999997 688899999999987
Q ss_pred c
Q 026659 80 A 80 (235)
Q Consensus 80 ~ 80 (235)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 112
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=122.85 Aligned_cols=79 Identities=32% Similarity=0.457 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|||+++|+++|+++|++||+|..|.+..+ +|||||+|.+.++|++|+..|||..+.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 46789999999999999999999999999999999743 899999999999999999999999999999999999865
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 113
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=5.5e-20 Score=124.02 Aligned_cols=81 Identities=17% Similarity=0.349 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 4689999999999999999999999999999999954 4788999999999999999999965 59999999999999
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.+...
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86554
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=3.3e-20 Score=124.81 Aligned_cols=76 Identities=29% Similarity=0.516 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.++++|||+|||+++|+++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..+.|+.|.|.++.+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 468999999999999999999999999999999998 899999999999999999999999999999999999865
Q ss_pred C
Q 026659 84 R 84 (235)
Q Consensus 84 ~ 84 (235)
.
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 4
No 115
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=123.90 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=72.1
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc-----CCce
Q 026659 2 SSRSSRTLYV--GNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-----DGYR 74 (235)
Q Consensus 2 ~~~~~~~l~v--~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~-----~g~~ 74 (235)
+..|+++||| |||++++|+++|+++|++||+|..|.+.. .+|||||+|.+.++|++|+..|||..+ .|+.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4568899999 77999999999999999999999998864 389999999999999999999999987 6899
Q ss_pred EEEEeccCCC
Q 026659 75 LRVELAHGGR 84 (235)
Q Consensus 75 i~v~~~~~~~ 84 (235)
|.|.++....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987544
No 116
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=125.42 Aligned_cols=78 Identities=27% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
++.++|||+|||+++|+++|+++|++||.|..|.+.. +++||||+|.+.++|+.|+..|||..+.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4578999999999999999999999999999998864 5899999999999999999999999999999999999764
Q ss_pred C
Q 026659 84 R 84 (235)
Q Consensus 84 ~ 84 (235)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 117
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=7.7e-20 Score=126.32 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.++++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4678999999999999999999999999999999954 57789999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 026659 82 GGRRHS 87 (235)
Q Consensus 82 ~~~~~~ 87 (235)
......
T Consensus 113 ~~~~~~ 118 (124)
T 2kt5_A 113 SQIDLE 118 (124)
T ss_dssp CTTCCC
T ss_pred CCCCCC
Confidence 755443
No 118
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=120.71 Aligned_cols=77 Identities=30% Similarity=0.439 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++|+++|+++|++| |.|..|.+. +|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 467899999999999999999999999 999999876 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 026659 82 GGRR 85 (235)
Q Consensus 82 ~~~~ 85 (235)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 119
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=123.17 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|||+++|+++|+++|++||.|.-+ ...++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECC-BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEE-ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 478999999999999999999999999988322 2346788999999999999999999999999999999999999876
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=118.93 Aligned_cols=75 Identities=28% Similarity=0.464 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhc-CCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++++++|+++|++||+|..|.+.. ++|||||+|.+.++|..|+..| +|..+.|+.|.|.+++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 5679999999999999999999999999999999975 3799999999999999999998 9999999999999974
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.4e-20 Score=122.48 Aligned_cols=78 Identities=31% Similarity=0.497 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (235)
..++|||+|||+++|+++|+++|++||.|. +.+. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 479999999999999999999999999996 5454 34679999999999999999999999999999999999998654
No 122
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=121.02 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC-CccCCceEEEEec
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELA 80 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~i~v~~~ 80 (235)
..+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|+..||| ..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 457899999999999999999999999999 6766664 389999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.+...
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87544
No 123
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=2.2e-20 Score=117.42 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=67.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
+|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.++++|++|+. |||..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999854 57789999999999999999998 9999999999999875
No 124
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.8e-20 Score=123.90 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.+.++|||+|||.++++++|+++|++||.|..+.+. .++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 357899999999999999999999999999999997 4589999999999999999999999999999999999874
No 125
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=125.74 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 35789999999999999999999999999999999954 467889999999999999999997 99999999999999
Q ss_pred ccCCCCC
Q 026659 80 AHGGRRH 86 (235)
Q Consensus 80 ~~~~~~~ 86 (235)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9866543
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=132.79 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
+.++|||+|||+++|+++|+++|+.|| .|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999953 678899999999999999999999999999999999999
Q ss_pred ccC
Q 026659 80 AHG 82 (235)
Q Consensus 80 ~~~ 82 (235)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 127
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-21 Score=122.82 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..++++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35789999999999999999999999999999999854 578899999999999999999999999999999988776
Q ss_pred cc
Q 026659 80 AH 81 (235)
Q Consensus 80 ~~ 81 (235)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 128
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=123.72 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec----CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
.+.++|||+|||+++++++|+++|++|| |..|.+.. ++.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4679999999999999999999999999 99999953 5778999999999999999999 7999999999999999
Q ss_pred ccCC
Q 026659 80 AHGG 83 (235)
Q Consensus 80 ~~~~ 83 (235)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8753
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=124.32 Aligned_cols=80 Identities=35% Similarity=0.673 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 568999999999999999999999999999999953 56779999999999999999999999999999999999998
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 130
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=3.3e-20 Score=129.78 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3578999999999999999999999999999999954 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.+...
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87554
No 131
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=7.2e-20 Score=131.54 Aligned_cols=82 Identities=33% Similarity=0.474 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999954 4678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86544
No 132
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=129.86 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCC----ccCCc
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGY 73 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~----~~~g~ 73 (235)
+.+.++|||+|||+++|+++|+++|++||.|.. |.|.. ++.++|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457899999999999999999999999999966 88843 678999999999999 999999999999 99999
Q ss_pred eEEEEeccCCCC
Q 026659 74 RLRVELAHGGRR 85 (235)
Q Consensus 74 ~i~v~~~~~~~~ 85 (235)
.|.|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987543
No 133
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=124.11 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
...++|||+|||+++++++|+++|++||.|..+.+ ..++.++|||||+|.++++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35688999999999999999999999999976555 346778999999999999999999999999999999999998
Q ss_pred cCC
Q 026659 81 HGG 83 (235)
Q Consensus 81 ~~~ 83 (235)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=8.9e-20 Score=123.31 Aligned_cols=76 Identities=28% Similarity=0.576 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 5 SSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 5 ~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
++++|||+|||++ +|+++|+++|++||+|..|.+ ++|||||+|.+.++|+.|+..|||..+.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999999 3899999999999999999999999999999999999854
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 101 ~~ 102 (110)
T 1wf1_A 101 KP 102 (110)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 135
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=117.30 Aligned_cols=73 Identities=16% Similarity=0.373 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.++++|++|+..++ ..+.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999954 47789999999999999999999999 9999999999986
No 136
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-20 Score=124.69 Aligned_cols=78 Identities=27% Similarity=0.458 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999954 4678999999999999999999 899999999999999987
Q ss_pred CC
Q 026659 82 GG 83 (235)
Q Consensus 82 ~~ 83 (235)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 137
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=1.5e-20 Score=123.77 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|+++|++||.|..+.+. .++.++|||||+|.++++|++|+..|||..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 357899999999999999999999999998876663 35678899999999999999999999999999999999987
Q ss_pred c
Q 026659 81 H 81 (235)
Q Consensus 81 ~ 81 (235)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 6
No 138
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.4e-19 Score=130.39 Aligned_cols=81 Identities=38% Similarity=0.573 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 478999999999999999999999999999999954 57899999999999999999999999999999999999998
Q ss_pred CCCC
Q 026659 82 GGRR 85 (235)
Q Consensus 82 ~~~~ 85 (235)
+...
T Consensus 149 ~~~~ 152 (158)
T 2kn4_A 149 YGRP 152 (158)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7544
No 139
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-20 Score=123.15 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 467899999999999999999999999998877 567788999999999999999999999999999999999999764
Q ss_pred C
Q 026659 84 R 84 (235)
Q Consensus 84 ~ 84 (235)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=120.75 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|+++|++||.|.. |.|.. ++.++|||||+|.++++|++|+.. |+..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46799999999999999999999999999987 77743 678899999999999999999996 999999999999998
Q ss_pred cCCC
Q 026659 81 HGGR 84 (235)
Q Consensus 81 ~~~~ 84 (235)
....
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7544
No 141
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=1.6e-20 Score=122.43 Aligned_cols=78 Identities=29% Similarity=0.583 Sum_probs=69.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.+ |..|+..|||..+.|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999999999954 4788999999999999 99999999999999999999999865
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 142
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.2e-19 Score=125.34 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++|+++|+++|++||.|..|.+. .++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999999999995 36788999999999999999999 699999999999999988
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 143
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=118.37 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++++++|+++|+.| .|..|.+.. ++.++|||||+|.+.++|++|+. |||..+.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 568999999999999999999999999 999999964 56778999999999999999999 99999999999999998
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
+..
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 144
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.81 E-value=5.6e-20 Score=119.21 Aligned_cols=78 Identities=31% Similarity=0.405 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
++..++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.++++|++|+..|||..+.|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 5678999999999999999999999999 99999885 5689999999999999999999999999999999999875
Q ss_pred CC
Q 026659 83 GR 84 (235)
Q Consensus 83 ~~ 84 (235)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 145
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.3e-20 Score=122.07 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|||+++|+++|+++|+.|+.|.-+.-..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 57899999999999999999999998865554444457788999999999999999999999999999999999999875
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 93 ~~ 94 (102)
T 2fc8_A 93 GE 94 (102)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 146
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=127.35 Aligned_cols=77 Identities=34% Similarity=0.572 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4689999999999999999999999999999999954 4788999999999999999999999999999999999885
No 147
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=119.16 Aligned_cols=81 Identities=19% Similarity=0.409 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+. ++..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 5789999999999999999999999999999999954 47789999999999999999999 477899999999999
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
.+....
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 876543
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=1.8e-19 Score=128.66 Aligned_cols=79 Identities=44% Similarity=0.737 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|||+++|+++|+++|++||.|..|.+..+ ++|||||+|.+.++|..|+..|||..+.|+.|.|.++.++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 6899999999999999999999999999999999998864
Q ss_pred C
Q 026659 84 R 84 (235)
Q Consensus 84 ~ 84 (235)
+
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=122.17 Aligned_cols=81 Identities=19% Similarity=0.376 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999965 477899999999999999999996 9999999999999998
Q ss_pred CCCCC
Q 026659 82 GGRRH 86 (235)
Q Consensus 82 ~~~~~ 86 (235)
+....
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76543
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.81 E-value=5.3e-20 Score=130.33 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (235)
..++++|||+|||+++|+++|.++|++||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999998876 555667889999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 026659 75 LRVELAHGGR 84 (235)
Q Consensus 75 i~v~~~~~~~ 84 (235)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997644
No 151
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=1.1e-19 Score=131.70 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.++++|||+|||+.+|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999953 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 026659 81 HGGRR 85 (235)
Q Consensus 81 ~~~~~ 85 (235)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 86543
No 152
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-20 Score=124.17 Aligned_cols=81 Identities=19% Similarity=0.323 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++|+++|+++|++||.|..+.+ ..++.++|||||+|.+.++|++|+. |||..+.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46889999999999999999999999998877222 2357889999999999999999999 99999999999999998
Q ss_pred CCCC
Q 026659 82 GGRR 85 (235)
Q Consensus 82 ~~~~ 85 (235)
+...
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 153
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=114.09 Aligned_cols=75 Identities=27% Similarity=0.355 Sum_probs=67.4
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 026659 4 RSSRT-LYVGNLPGDTRMRE----VEDLFYKY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (235)
Q Consensus 4 ~~~~~-l~v~nl~~~~t~~~----l~~~F~~~-G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (235)
.|+.+ |||+|||..+++++ |+++|++| |+|.+| ++ |+|||.|.+.++|.+|++.|||..+.|++|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46666 99999999999998 56899999 599998 33 99999999999999999999999999999999
Q ss_pred EeccCCCC
Q 026659 78 ELAHGGRR 85 (235)
Q Consensus 78 ~~~~~~~~ 85 (235)
.+|+....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99986654
No 154
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=122.44 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCcc--------CCc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--------DGY 73 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--------~g~ 73 (235)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4679999999999999999999999999999999954 567789999999999999999999999999 578
Q ss_pred eEEEEeccCC
Q 026659 74 RLRVELAHGG 83 (235)
Q Consensus 74 ~i~v~~~~~~ 83 (235)
.|.|.++.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998853
No 155
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=116.62 Aligned_cols=79 Identities=19% Similarity=0.407 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
...++|||+|||+++|+++|+++|++||.|..|.+.. ...+ ||||+|.+.++|++|+. |||..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK-DKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECS-SSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcC-CCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 4678999999999999999999999999999983322 1122 99999999999999999 9999999999999988754
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.80 E-value=1.9e-19 Score=122.49 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce-----EEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-----LRVE 78 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-----i~v~ 78 (235)
+..++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++|+..|||..|.|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45789999999999999999999999999999999754 99999999999999999999999999998 7777
Q ss_pred eccCC
Q 026659 79 LAHGG 83 (235)
Q Consensus 79 ~~~~~ 83 (235)
.+.+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76643
No 157
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=123.44 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI-VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|.. ++.++|||||+|.+.++|++|+.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 467999999999999999999999999999 7788843 678899999999999999999996 999999999999998
Q ss_pred cCC
Q 026659 81 HGG 83 (235)
Q Consensus 81 ~~~ 83 (235)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.2e-19 Score=116.08 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|| ++|+++|+++|++||+|..|.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 46789999996 89999999999999999999985 46899999999999999999999999999999999999865
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 159
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=1.1e-19 Score=114.24 Aligned_cols=72 Identities=19% Similarity=0.461 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
+|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.++++|++|+. +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999854 47789999999999999999999 5999999999999875
No 160
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=119.92 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++|+++|+++|+.||.+ .|.|.. ++.++|||||+|.++++|++|+. +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 467899999999999999999999999954 888843 67789999999999999999996 89999999999999987
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=116.73 Aligned_cols=79 Identities=15% Similarity=0.358 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-EecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~-~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+++|||+|||+++++++|+++|++||.|..+. +..+. ..+.|||+|.+.++|..|+..|||..+.|+.|.|.++.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 478999999999999999999999999999994 65432 2345999999999999999999999999999999999875
Q ss_pred C
Q 026659 84 R 84 (235)
Q Consensus 84 ~ 84 (235)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 162
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=4.3e-19 Score=146.92 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=104.2
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEE----ecC-CCCCCeE-----EEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 13 NLPGDTRMREVEDLFYKYGPIVDIDL----KIP-PRPPGYA-----FLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 13 nl~~~~t~~~l~~~F~~~G~i~~i~~----~~~-~~~~g~a-----fV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.||++ |..+|.++|+|..|.. +.. ....+|+ |+.|.....+..++..++.....++.........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 45655 7899999999988733 111 1233444 7888777666555543433322211000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHH
Q 026659 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYD 158 (235)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~ 158 (235)
..... .....+...........+..+|||+|||..+++++|.++|.+||.|+.|.|+.+. ..|||||+|.+.+
T Consensus 79 ~~~~~---~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e 155 (437)
T 3pgw_S 79 QQEVE---TELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHER 155 (437)
T ss_pred HHHHH---HhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHH
Confidence 00000 0000000000111122445799999999999999999999999999999998774 3579999999999
Q ss_pred HHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 159 ~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
+|..||..|||..|.| ..|.|..+..
T Consensus 156 ~A~~Ai~~lng~~i~g----r~i~V~~a~~ 181 (437)
T 3pgw_S 156 DMHSAYKHADGKKIDG----RRVLVDVERG 181 (437)
T ss_pred HHHHHHHHcCCCEECC----EEEEEEEeCC
Confidence 9999999999999999 6777776653
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=5e-19 Score=129.35 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.++++|||+|||+.+++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3578999999999999999999999999999999954 47789999999999999999999999999999999999997
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 543
No 164
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-19 Score=123.88 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~---i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. ++.++|||||+|.++++|++|+. ||+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999998 88888854 47789999999999999999999 99999999999999
Q ss_pred eccC
Q 026659 79 LAHG 82 (235)
Q Consensus 79 ~~~~ 82 (235)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 165
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=8.2e-19 Score=127.09 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=72.8
Q ss_pred EEecCHHHHHHHHHhcCCCccC--CceEEEEeccCCCCCCCCCCCCC-CCCCCCCCCCCCCCCceEEEeCCCCCCCHHHH
Q 026659 50 LEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRHSSSMDRYS-SYSSGGSRGVSRRSDYRVLVTGLPSSASWQDL 126 (235)
Q Consensus 50 V~f~~~~~a~~a~~~l~g~~~~--g~~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l 126 (235)
.+|.+.++|..|+..|++.... |+.+...++........ ..... ........+....+.++|||+|||..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSY-ERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCc-cccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 7899999999999999987664 66666665332111000 00000 00001112233456789999999999999999
Q ss_pred HHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 127 KDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 127 ~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
.++|.+||.|..+.+..+.. .|||||+|.+.++|..||..|||..+.| ..|.|..+....
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~~ 153 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCFVKG 153 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESEECC
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecCCC
Confidence 99999999999999998753 4699999999999999999999999999 678887775544
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=7.6e-19 Score=124.93 Aligned_cols=78 Identities=22% Similarity=0.249 Sum_probs=70.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEeccCCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR 84 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~~~~~ 84 (235)
.+|||+||++.+|+++|+++|++||+|..|.+.. +.++|||||+|.+.++|+.|+..|||..|.| +.|.|+|+++..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 5689999999999999999999999999999853 3357899999999999999999999999965 999999998764
Q ss_pred C
Q 026659 85 R 85 (235)
Q Consensus 85 ~ 85 (235)
.
T Consensus 126 l 126 (164)
T 1sjr_A 126 L 126 (164)
T ss_dssp C
T ss_pred c
Confidence 3
No 167
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.8e-19 Score=125.58 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~---i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
.+.++|||+|||+++|+++|+++|++||. |..|.|.. .+.++|||||+|.++++|++|+. ||+..+.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45789999999999999999999999999 88888854 47789999999999999999999 99999999999999
Q ss_pred eccC
Q 026659 79 LAHG 82 (235)
Q Consensus 79 ~~~~ 82 (235)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9863
No 168
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-19 Score=123.54 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE--ecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-i~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++|+++|+++|+.||.|.. +.+ ..++.++|||||+|.+.++|++|+. |||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35689999999999999999999999999876 333 3577889999999999999999999 9999999999999998
Q ss_pred cC
Q 026659 81 HG 82 (235)
Q Consensus 81 ~~ 82 (235)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 169
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.5e-19 Score=135.47 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..++|||+|||+++|+++|+++|++|| .|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999954 678899999999999999999999999999999999999
Q ss_pred ccC
Q 026659 80 AHG 82 (235)
Q Consensus 80 ~~~ 82 (235)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 170
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=120.77 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~---i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (235)
..+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++|+. ||+..+.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 357899999999999999999999999998 89998854 37889999999999999999999 9999999999999
Q ss_pred EeccC
Q 026659 78 ELAHG 82 (235)
Q Consensus 78 ~~~~~ 82 (235)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99874
No 171
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.3e-19 Score=117.68 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
.++|||+|||+++|+++|+++|+.| .|..|.|.. ++.++|||||+|.++++|++|+. ||+..|.|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999954 47889999999999999999995 999999999999998863
No 172
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=9.8e-19 Score=119.95 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCe-EEEEecCHHHHHHHHHhcCCCccCC--ceEEEEeccCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGG 83 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~~~~ 83 (235)
..|||+||++.+|+++|+++|++||+|..|.+... .+|| |||+|.+.++|+.|+..|||..|.| +.|.|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 45779999999999999999999999999988642 3687 9999999999999999999999988 99999999876
Q ss_pred CC
Q 026659 84 RR 85 (235)
Q Consensus 84 ~~ 85 (235)
..
T Consensus 107 ~l 108 (130)
T 3zzy_A 107 SL 108 (130)
T ss_dssp SC
T ss_pred ce
Confidence 53
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.78 E-value=1e-18 Score=112.99 Aligned_cols=73 Identities=32% Similarity=0.594 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccC
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G-------~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (235)
+++.++|||+|||+++++++|+++|++| | +|..+.+..+ +|||||+|.++++|.+|+ .|||..+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 8999988744 899999999999999999 89999999
Q ss_pred CceEEEEe
Q 026659 72 GYRLRVEL 79 (235)
Q Consensus 72 g~~i~v~~ 79 (235)
|+.|.|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999874
No 174
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=1.1e-18 Score=117.31 Aligned_cols=82 Identities=32% Similarity=0.484 Sum_probs=72.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
.....++|||+|||+.+++++|+++|.+|| .|..+.+..+...|||||+|.+.++|.+|++.|||..+.| +.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 344568999999999999999999999999 8999998766678899999999999999999999999999 78999
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
+.+...+
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 8876544
No 175
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=123.43 Aligned_cols=78 Identities=22% Similarity=0.208 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEe--cCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i----~~i~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (235)
.+.++|||+|||+++|+++|+++|++||+| ..|.|. .++.++|||||+|.++++|++|+.. |+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 467899999999999999999999999975 577774 3678899999999999999999995 999999999999
Q ss_pred EeccC
Q 026659 78 ELAHG 82 (235)
Q Consensus 78 ~~~~~ 82 (235)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98763
No 176
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=6.1e-19 Score=123.33 Aligned_cols=121 Identities=16% Similarity=0.090 Sum_probs=73.5
Q ss_pred CCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHH
Q 026659 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQ 124 (235)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~ 124 (235)
.-++|++|.+...+..|+..++|....|+.- +.+ +...+.....++|||+|||..++++
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~--------------------~~~~~~~~~~~~l~V~nLp~~~te~ 62 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY--------------------GRPPPDVEGMTSLKVDNLTYRTSPD 62 (135)
T ss_dssp --------------------------------CCS--------------------CCSCSSGGGCCCEEEECCCSSCHHH
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CCc--------------------CCCCCCCCCCCEEEEeCCCCCCCHH
Confidence 3468888899999999999898865544331 000 1112334556799999999999999
Q ss_pred HHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 125 DLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 125 ~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
+|.++|.+||.|..+.+..+. ..|||||+|.+.++|.+|+..|||..+.| ..|+|...+..+
T Consensus 63 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~~~~ 128 (135)
T 2lea_A 63 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYGR 128 (135)
T ss_dssp HHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS----SCCEEEECCCCC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCCC
Confidence 999999999999999998764 34699999999999999999999999999 678888776544
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=1.7e-18 Score=112.24 Aligned_cols=75 Identities=24% Similarity=0.473 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc--CCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++|+++|+++|++||+|.+|.+..+ ++|||||+|.++++|++ ++|..+ .|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 47899999999999999999999999999999999763 79999999999999984 556544 69999999987
Q ss_pred CCC
Q 026659 82 GGR 84 (235)
Q Consensus 82 ~~~ 84 (235)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.4e-18 Score=117.53 Aligned_cols=74 Identities=22% Similarity=0.199 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCe-EEEEecCHHHHHHHHHhcCCCccCC--ceEEEEeccCCCC
Q 026659 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGRR 85 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~~~~~~ 85 (235)
|||+||++.+|+++|+++|++||.|..|.+... .|| |||+|.+.++|..|+..|||..|.| +.|.|.++++...
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 679999999999999999999999999998542 386 9999999999999999999999987 6999999987653
No 179
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.3e-19 Score=113.43 Aligned_cols=79 Identities=24% Similarity=0.428 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccC
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (235)
+.++++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|... ...+.|+.|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999999754 689999999999999864331 3445899999999886
Q ss_pred CCC
Q 026659 83 GRR 85 (235)
Q Consensus 83 ~~~ 85 (235)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 180
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=4.9e-18 Score=112.25 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=70.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
.+++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..+.| +.|+|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 456899999999999999999999999999999998754 3699999999999999999999999999 78888
Q ss_pred eecCC
Q 026659 184 REYDS 188 (235)
Q Consensus 184 ~~~~~ 188 (235)
..+++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 87753
No 181
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=3.6e-19 Score=124.49 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++|+++|+++|++|| |..|.|.. ++.++|||||+|.++++|++|+ .+|+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4578999999999999999999999999 66888854 4788999999999999999999 699999999999999987
Q ss_pred CCCC
Q 026659 82 GGRR 85 (235)
Q Consensus 82 ~~~~ 85 (235)
....
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 182
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=9.6e-18 Score=114.21 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=72.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
....+|||+|||..+++++|.++|.+||.|..+.+..+. ..|||||+|.+.++|.+|+..|||..+.| ..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG----KAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 445799999999999999999999999999999999876 34799999999999999999999999999 67888
Q ss_pred eecCCCCC
Q 026659 184 REYDSRRS 191 (235)
Q Consensus 184 ~~~~~~~s 191 (235)
..+.....
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 88765553
No 183
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-20 Score=126.75 Aligned_cols=83 Identities=28% Similarity=0.401 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccC
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (235)
..+.++|||+|||+++++++|+++|++||.|.. |.+.. ++.++|||||+|.+.++|++|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 357899999999999999999999999999998 77743 4778999999999999999999999999999
Q ss_pred CceEEEEeccCCCC
Q 026659 72 GYRLRVELAHGGRR 85 (235)
Q Consensus 72 g~~i~v~~~~~~~~ 85 (235)
|+.|.|.++.+...
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999986543
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=1.9e-18 Score=118.52 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--DIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|.. ++.++|||||+|.++++|++|+. +++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 357899999999999999999999999 576 888853 47889999999999999999999 588999999999998
Q ss_pred ccC
Q 026659 80 AHG 82 (235)
Q Consensus 80 ~~~ 82 (235)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 763
No 185
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=8.5e-18 Score=106.21 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=67.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
....|+|+||++.+++++|.++|.+||+|..+++.. .+|||||+|.+.++|.+|++.|||..+.| +.|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 456899999999999999999999999999999876 56799999999999999999999999999 78888766
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=4.3e-18 Score=116.65 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.++++|||+|| ++|+++|+++|++||+|..|.+. .++|||||+|.+.++|++|+..|||..+.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 46799999996 69999999999999999999986 56899999999999999999999999999999999999865
Q ss_pred C
Q 026659 84 R 84 (235)
Q Consensus 84 ~ 84 (235)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 187
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.4e-18 Score=114.48 Aligned_cols=75 Identities=32% Similarity=0.500 Sum_probs=62.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---C---CCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 026659 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---P---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (235)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (235)
..++++|||+|||+++|+++|+++|++||+|. +.+.. + +.++|||||+|.++++|++|+..|++ +.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 45789999999999999999999999999999 66643 2 57899999999999999999998842 5555555
Q ss_pred EEec
Q 026659 77 VELA 80 (235)
Q Consensus 77 v~~~ 80 (235)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5543
No 188
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=6.3e-19 Score=117.47 Aligned_cols=80 Identities=21% Similarity=0.442 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+. ++..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 3578999999999999999999999999999999954 56778999999999999999999 9999999999999987
Q ss_pred CCCC
Q 026659 82 GGRR 85 (235)
Q Consensus 82 ~~~~ 85 (235)
....
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 5543
No 189
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=7.7e-18 Score=116.56 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=72.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QP 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS----SB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 345678999999999999999999999999999999987743 4699999999999999999999999999 67
Q ss_pred EEEeecCCCCC
Q 026659 181 VRVREYDSRRS 191 (235)
Q Consensus 181 i~v~~~~~~~s 191 (235)
|+|..+.....
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 77777655443
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=1.1e-17 Score=111.50 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEecC----CCCCCeEEEEecCHHHHHHHHHhcCCCccCCc
Q 026659 3 SRSSRTLYVGNLPG-----DTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (235)
Q Consensus 3 ~~~~~~l~v~nl~~-----~~t~~~l~~~F~~~G~i~~i~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (235)
..++++|+|.||.. +-++++|+++|++||+|..|.+..+ +.++|||||+|.++++|.+|+..|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46899999999963 2478999999999999999999643 57899999999999999999999999999999
Q ss_pred eEEEEeccC
Q 026659 74 RLRVELAHG 82 (235)
Q Consensus 74 ~i~v~~~~~ 82 (235)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 191
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=9.9e-18 Score=126.59 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||.++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3568999999999999999999999999999999954 5677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 026659 81 HGGRRH 86 (235)
Q Consensus 81 ~~~~~~ 86 (235)
.+....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876443
No 192
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.7e-18 Score=121.33 Aligned_cols=78 Identities=22% Similarity=0.424 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+.+|+++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4678999999999999999999999999999999953 5778999999999999999999999999999999999998
Q ss_pred c
Q 026659 81 H 81 (235)
Q Consensus 81 ~ 81 (235)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 193
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=6.5e-18 Score=127.49 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
..++|||+|||+.+|+++|+++|+.||.|..|.+.. .+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 457899999999999999999999999999999954 4557899999999999999999999999999999999998753
No 194
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=110.05 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=74.3
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccce
Q 026659 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (235)
Q Consensus 103 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~ 178 (235)
.+...+..+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 82 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG---- 82 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT----
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 34455678999999999999999999999999999999988654 4799999999999999999999999999
Q ss_pred eEEEEeecCCCCC
Q 026659 179 SYVRVREYDSRRS 191 (235)
Q Consensus 179 ~~i~v~~~~~~~s 191 (235)
..|+|..++..+.
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 83 RELRVQVARYGRR 95 (103)
T ss_dssp BCCEEEECSSCCS
T ss_pred cEEEEEECCcCCC
Confidence 6788888765543
No 195
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=2.7e-17 Score=111.83 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=70.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~--~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
..+|||+|||..+++++|.++|.+||.|..+.+..+.. +|||||+|.+.++|.+|+..|||..+.| +.|+|...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEC
Confidence 45899999999999999999999999999999998865 4699999999999999999999999999 78888877
Q ss_pred CCCC
Q 026659 187 DSRR 190 (235)
Q Consensus 187 ~~~~ 190 (235)
..+.
T Consensus 81 ~~~~ 84 (115)
T 4f25_A 81 KSRK 84 (115)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 5443
No 196
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-16 Score=106.89 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~--~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
......++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| ..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 3445668999999999999999999999999999999998754 5799999999999999999999999999 788
Q ss_pred EEeecCCCCC
Q 026659 182 RVREYDSRRS 191 (235)
Q Consensus 182 ~v~~~~~~~s 191 (235)
+|.....+..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 8888876654
No 197
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-16 Score=107.88 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=74.0
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
......++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|++.||+..+.| ..|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3445678999999999999999999999999999999976643 6799999999999999999999999999 7888
Q ss_pred EeecCCCCC
Q 026659 183 VREYDSRRS 191 (235)
Q Consensus 183 v~~~~~~~s 191 (235)
|..++..+.
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 888766543
No 198
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=108.87 Aligned_cols=79 Identities=6% Similarity=0.076 Sum_probs=69.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcC--CeecCccceeEEEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRV 183 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g--~~~~g~~~~~~i~v 183 (235)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|..|+..|++ ..+.| +.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 345679999999999999999999999999999999976 57999999999999999998864 68899 78888
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..+..+.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 7775544
No 199
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=1.8e-16 Score=107.85 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
......++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----R 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----E
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 3445678999999999999999999999999999999998753 4699999999999999999999999999 7
Q ss_pred EEEEeecCCCCC
Q 026659 180 YVRVREYDSRRS 191 (235)
Q Consensus 180 ~i~v~~~~~~~s 191 (235)
.|+|..+.....
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 888888766553
No 200
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-16 Score=105.79 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=74.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~--~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| +.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 345668999999999999999999999999999999998754 4799999999999999999999999999 7899
Q ss_pred EeecCCCCCc
Q 026659 183 VREYDSRRSY 192 (235)
Q Consensus 183 v~~~~~~~sr 192 (235)
|........+
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9888765543
No 201
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.9e-17 Score=108.43 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=73.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEec--CCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~--~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+ ...+||||+|.+.++|.+|+..|||..+.| ..|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----KPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 3456789999999999999999999999999999999987 334699999999999999999999999999 6788
Q ss_pred EeecCCCCC
Q 026659 183 VREYDSRRS 191 (235)
Q Consensus 183 v~~~~~~~s 191 (235)
|..+.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 888766543
No 202
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.2e-18 Score=113.96 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=67.5
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecC----HHH----HHHHHH--hcCCCc
Q 026659 7 RTLYVGNL----PGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFED----YRD----AEDAIR--GRDGYN 69 (235)
Q Consensus 7 ~~l~v~nl----~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~----~~~----a~~a~~--~l~g~~ 69 (235)
+.|||+|| |+.+++++|+++|+.||+|.++.+.. ||.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999944 68899999999996 433 788988 789999
Q ss_pred cCCceEEEEeccC
Q 026659 70 FDGYRLRVELAHG 82 (235)
Q Consensus 70 ~~g~~i~v~~~~~ 82 (235)
|.|+.|.|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998664
No 203
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.8e-17 Score=104.47 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=71.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
..+.++|||+|||..+++++|.++|.+||.|..+.+. ++||||+|.+.++|.+|+..|||..+.| ..|+|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEE
Confidence 3456899999999999999999999999999999988 4599999999999999999999999999 7888888
Q ss_pred cCCCCCcC
Q 026659 186 YDSRRSYS 193 (235)
Q Consensus 186 ~~~~~sr~ 193 (235)
........
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 76665443
No 204
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.4e-17 Score=106.77 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=72.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+. ..|||||+|.+.++|.+|+. ||+..+.| ..
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~ 80 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG----KK 80 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS----CB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC----eE
Confidence 34566899999999999999999999999999999998874 35799999999999999998 99999999 67
Q ss_pred EEEeecCCCCCc
Q 026659 181 VRVREYDSRRSY 192 (235)
Q Consensus 181 i~v~~~~~~~sr 192 (235)
|+|.....+...
T Consensus 81 l~V~~a~~~~~~ 92 (99)
T 2dgs_A 81 VEVKRAEPRDSK 92 (99)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCccc
Confidence 888887665543
No 205
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7.7e-17 Score=105.84 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=72.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| ..|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 78 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMR 78 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEE
Confidence 3457999999999999999999999999999999998753 4699999999999999999999999999 6788
Q ss_pred EeecCCCCCc
Q 026659 183 VREYDSRRSY 192 (235)
Q Consensus 183 v~~~~~~~sr 192 (235)
|.....+...
T Consensus 79 V~~a~~~~~~ 88 (95)
T 2dnz_A 79 VGHVTERLDG 88 (95)
T ss_dssp EEESSCCCCC
T ss_pred EEEcccccCC
Confidence 8887665543
No 206
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-17 Score=106.46 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=73.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.+.++|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|..|+..|||..+.| ..|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 456799999999999999999999999999999998775 34799999999999999999999999999 7888
Q ss_pred EeecCCCCCc
Q 026659 183 VREYDSRRSY 192 (235)
Q Consensus 183 v~~~~~~~sr 192 (235)
|.........
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 8888766543
No 207
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=1.1e-17 Score=126.63 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCcc----
Q 026659 4 RSSRTLYVGNLPGDT---------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---- 70 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~---------t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---- 70 (235)
.++++|||+||+..+ ++++|+++|++||+|.+|.|.. ++|||||+|.+.++|+.|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 468999999999998 7999999999999999999974 489999999999999999999999999
Q ss_pred --------CCceEEEEeccCCC
Q 026659 71 --------DGYRLRVELAHGGR 84 (235)
Q Consensus 71 --------~g~~i~v~~~~~~~ 84 (235)
.|+.|.|.||....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999998644
No 208
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.8e-17 Score=107.25 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=71.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
..+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+.| ..|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG----RQI 84 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS----CCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----eEE
Confidence 45668999999999999999999999999999999988753 4699999999999999999999999999 677
Q ss_pred EEeecCCCC
Q 026659 182 RVREYDSRR 190 (235)
Q Consensus 182 ~v~~~~~~~ 190 (235)
+|..+....
T Consensus 85 ~v~~a~~~~ 93 (102)
T 1x5s_A 85 RVDQAGKSS 93 (102)
T ss_dssp EEEEEECCC
T ss_pred EEEECCCCC
Confidence 777765544
No 209
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-16 Score=103.62 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+.++ ||||+|.+.++|.+|+..|||..+.| ..|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEE
Confidence 3456789999999999999999999999999999999855 99999999999999999999999999 789998
Q ss_pred ecCCCCC
Q 026659 185 EYDSRRS 191 (235)
Q Consensus 185 ~~~~~~s 191 (235)
....+..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 8866553
No 210
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=7.6e-17 Score=108.53 Aligned_cols=78 Identities=17% Similarity=0.070 Sum_probs=71.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
+..+|||+|||..+++++|.++|.+||.|..+.++.+.. .|||||+|.+.++|.+|++.|||..+.| +.|+|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG----NIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC----eEEEE
Confidence 457999999999999999999999999999999998865 4699999999999999999999999999 78888
Q ss_pred eecCCC
Q 026659 184 REYDSR 189 (235)
Q Consensus 184 ~~~~~~ 189 (235)
..+...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 877544
No 211
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1.2e-17 Score=122.05 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.+.++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 356899999999999999999999999999888 667889999999999999999999999999999999999999754
No 212
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=1.5e-17 Score=121.11 Aligned_cols=77 Identities=29% Similarity=0.533 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 468999999999999999999999999999999943 56778999999999999999999999999999999999873
No 213
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.4e-17 Score=105.59 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=72.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHHhcCCceEEEEEecCC-ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~~~-~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
....++|||+|||..+++++|+ ++|.+||.|..+.+..+.. ++||||+|.+.++|.+|+..|||..+.| +.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 3456799999999999999999 9999999999999997643 5799999999999999999999999999 78
Q ss_pred EEEeecCCCC
Q 026659 181 VRVREYDSRR 190 (235)
Q Consensus 181 i~v~~~~~~~ 190 (235)
|+|..+++..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9998886654
No 214
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-16 Score=106.62 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=74.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
...+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cE
Confidence 345678999999999999999999999999999999998753 3699999999999999999999999999 78
Q ss_pred EEEeecCCCCCc
Q 026659 181 VRVREYDSRRSY 192 (235)
Q Consensus 181 i~v~~~~~~~sr 192 (235)
|+|.........
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 888887665543
No 215
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-16 Score=104.49 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=73.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
..+..+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| ..|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 45567999999999999999999999999999999998763 3699999999999999999999999999 7888
Q ss_pred EeecCCCCC
Q 026659 183 VREYDSRRS 191 (235)
Q Consensus 183 v~~~~~~~s 191 (235)
|..+.++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 888766543
No 216
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.8e-17 Score=106.21 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=71.8
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
......++|||+|||..+++++|.++|.+||.|. +.+..+...+||||+|.+.++|..|+..|||..+.| ..|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT----DTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 3445678999999999999999999999999997 677778888999999999999999999999999999 67888
Q ss_pred eecCCC
Q 026659 184 REYDSR 189 (235)
Q Consensus 184 ~~~~~~ 189 (235)
..++.+
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 777554
No 217
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=2.6e-17 Score=122.60 Aligned_cols=81 Identities=30% Similarity=0.524 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEec
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (235)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999953 5677999999999999999999999999999999999999
Q ss_pred cCCC
Q 026659 81 HGGR 84 (235)
Q Consensus 81 ~~~~ 84 (235)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 218
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.6e-17 Score=120.38 Aligned_cols=78 Identities=19% Similarity=0.492 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++|+++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467899999999999999999999999999999954 57889999999999999999999 99999999999999987
Q ss_pred CC
Q 026659 82 GG 83 (235)
Q Consensus 82 ~~ 83 (235)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 219
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-16 Score=105.71 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=72.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+.| ..|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEE
Confidence 345578999999999999999999999999999999998764 3699999999999999999999999999 778
Q ss_pred EEeecCCC
Q 026659 182 RVREYDSR 189 (235)
Q Consensus 182 ~v~~~~~~ 189 (235)
+|..+...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 88776543
No 220
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=105.51 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=71.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-------ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-------~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 457899999999999999999999999999999987644 3699999999999999999999999999 78
Q ss_pred EEEeecCCCCC
Q 026659 181 VRVREYDSRRS 191 (235)
Q Consensus 181 i~v~~~~~~~s 191 (235)
|+|........
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 88888766543
No 221
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-16 Score=106.58 Aligned_cols=85 Identities=16% Similarity=0.261 Sum_probs=74.0
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC-----CccEEEEEEcCHHHHHHHHHHh-cCCeecCccc
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFS 177 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~fV~f~~~~~A~~a~~~l-~g~~~~g~~~ 177 (235)
......++|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|.+|+..| ||..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g--- 86 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG--- 86 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---
Confidence 344567899999999999999999999999999999998772 3479999999999999999999 9999999
Q ss_pred eeEEEEeecCCCCCc
Q 026659 178 RSYVRVREYDSRRSY 192 (235)
Q Consensus 178 ~~~i~v~~~~~~~sr 192 (235)
..|+|.........
T Consensus 87 -~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 87 -RRLVLEWADSEVTV 100 (107)
T ss_dssp -CBCEEEECCCCCCC
T ss_pred -CEEEEEeCCCCCCC
Confidence 67888887665543
No 222
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=7.3e-17 Score=104.39 Aligned_cols=77 Identities=10% Similarity=0.180 Sum_probs=69.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC-----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
.++|||+|||..+++++|.++|.+||.|..+.+..+. ..|+|||+|.+.++|.+|+..|||..+.| ..|+|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEEE
Confidence 4689999999999999999999999999999998876 45799999999999999999999999999 77888
Q ss_pred eecCCC
Q 026659 184 REYDSR 189 (235)
Q Consensus 184 ~~~~~~ 189 (235)
....+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 776544
No 223
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=1.3e-16 Score=106.85 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=72.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCee---cCccc
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEF---RNAFS 177 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~---~g~~~ 177 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--- 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN--- 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---
Confidence 345668999999999999999999999999999999988643 47999999999999999999999987 77
Q ss_pred eeEEEEeecCCCCC
Q 026659 178 RSYVRVREYDSRRS 191 (235)
Q Consensus 178 ~~~i~v~~~~~~~s 191 (235)
..|+|........
T Consensus 86 -~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 -RPIQVKPADSESR 98 (106)
T ss_dssp -SCCEEEECCCCSC
T ss_pred -ceEEEEECCcccc
Confidence 6778877765543
No 224
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=8.5e-17 Score=106.87 Aligned_cols=76 Identities=22% Similarity=0.201 Sum_probs=69.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCCC
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (235)
++|||+|||..+++++|.++|.+||.|..+.+..+ ..+||||+|.+.++|.+|+..|||..+.| ..|+|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEEEccCC
Confidence 37999999999999999999999999999999988 67899999999999999999999999999 67888877665
Q ss_pred C
Q 026659 190 R 190 (235)
Q Consensus 190 ~ 190 (235)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 225
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=2e-16 Score=105.39 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
.+..+.++|||+|||..+++++|.++|.+|| |..+.++.+.. .|||||+|.+.++|.+|+ .|||..+.| +
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----R 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----E
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----e
Confidence 3445678999999999999999999999996 99999998864 469999999999999999 999999999 7
Q ss_pred EEEEeecCCCCCc
Q 026659 180 YVRVREYDSRRSY 192 (235)
Q Consensus 180 ~i~v~~~~~~~sr 192 (235)
.|+|..+......
T Consensus 84 ~l~V~~a~~~~~~ 96 (103)
T 2dng_A 84 SLRVDIAEGRKQD 96 (103)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEecCCCCC
Confidence 8888887665543
No 226
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-16 Score=106.40 Aligned_cols=83 Identities=17% Similarity=0.326 Sum_probs=72.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-----ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
+..+.++|||+|||..+++++|.++|.+|| |..+.+..+.. .|||||+|.+.++|.+|+ .|||..+.| .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 84 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----K 84 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----E
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----c
Confidence 345668999999999999999999999999 99999987753 469999999999999999 999999999 7
Q ss_pred EEEEeecCCCCCcC
Q 026659 180 YVRVREYDSRRSYS 193 (235)
Q Consensus 180 ~i~v~~~~~~~sr~ 193 (235)
.|+|..+..+....
T Consensus 85 ~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 85 RIRVDVADQAQDKD 98 (104)
T ss_dssp ECEEEECCCCCCCC
T ss_pred EEEEEEccCCCCCC
Confidence 88888887665433
No 227
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=3.4e-16 Score=104.29 Aligned_cols=77 Identities=9% Similarity=0.168 Sum_probs=69.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
.+.++|||+|||..+++++|.++|.+||.|..+.+.++ ||||+|.+.++|.+|+..|||..+.| ..|+|...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEEc
Confidence 45679999999999999999999999999999998744 99999999999999999999999999 78888888
Q ss_pred CCCCC
Q 026659 187 DSRRS 191 (235)
Q Consensus 187 ~~~~s 191 (235)
.....
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 66553
No 228
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-16 Score=106.72 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=73.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
....++|||+|||..+++++|.++|.+||.|..+.+..+ .+||||+|.+.++|..|+..|||..+.| ..|+|..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEe
Confidence 345679999999999999999999999999999999887 5699999999999999999999999999 7888888
Q ss_pred cCCCCCc
Q 026659 186 YDSRRSY 192 (235)
Q Consensus 186 ~~~~~sr 192 (235)
.+.....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 7766543
No 229
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=108.21 Aligned_cols=81 Identities=23% Similarity=0.343 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCC
Q 026659 4 RSSRTLYVGNLPGDTR-----------MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t-----------~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (235)
.++++|+|.||....+ +++|+++|++||+|..|.| .+..++|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4689999999954432 5899999999999999976 445689999999999999999999999999999
Q ss_pred ceEEEEeccCCCC
Q 026659 73 YRLRVELAHGGRR 85 (235)
Q Consensus 73 ~~i~v~~~~~~~~ 85 (235)
+.|.|.++.+...
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999986543
No 230
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=4.4e-16 Score=105.90 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=73.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
....++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| +.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 34568999999999999999999999999999999998764 3699999999999999999999999999 788
Q ss_pred EEeecCCCCC
Q 026659 182 RVREYDSRRS 191 (235)
Q Consensus 182 ~v~~~~~~~s 191 (235)
+|...+....
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 8888766554
No 231
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=102.71 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=68.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 4567999999999999999999999999999999998753 4699999999999999999999999999 7788
Q ss_pred EeecCCC
Q 026659 183 VREYDSR 189 (235)
Q Consensus 183 v~~~~~~ 189 (235)
|..+..+
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 8776543
No 232
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-16 Score=104.51 Aligned_cols=79 Identities=22% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeec--CccceeEEEEe
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR--NAFSRSYVRVR 184 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~--g~~~~~~i~v~ 184 (235)
.+.++|||+|||..+++++|.++|.+||.|..+.+..+ .+||||+|.+.++|.+|+..|||..+. | ..|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEEE
Confidence 45579999999999999999999999999999988866 569999999999999999999999999 7 678888
Q ss_pred ecCCCCC
Q 026659 185 EYDSRRS 191 (235)
Q Consensus 185 ~~~~~~s 191 (235)
.++.++.
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 7766543
No 233
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=104.16 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=71.1
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccce
Q 026659 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (235)
Q Consensus 103 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~ 178 (235)
+....+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|++.|||..+.|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 85 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG---- 85 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT----
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC----
Confidence 34455678999999999999999999999999999999988754 4699999999999999999999999999
Q ss_pred eEEEEeec
Q 026659 179 SYVRVREY 186 (235)
Q Consensus 179 ~~i~v~~~ 186 (235)
+.|+|..+
T Consensus 86 ~~l~v~~a 93 (94)
T 2e5h_A 86 RVIKASIA 93 (94)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEec
Confidence 77877664
No 234
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-16 Score=106.09 Aligned_cols=83 Identities=10% Similarity=0.154 Sum_probs=73.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhc------CCeecC
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD------RSEFRN 174 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~------g~~~~g 174 (235)
...+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+..|| |..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 345678999999999999999999999999999999997743 5799999999999999999999 999999
Q ss_pred ccceeEEEEeecCCCCC
Q 026659 175 AFSRSYVRVREYDSRRS 191 (235)
Q Consensus 175 ~~~~~~i~v~~~~~~~s 191 (235)
..|+|.....+..
T Consensus 91 ----~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 ----RQLKVDLAVTRDE 103 (111)
T ss_dssp ----CEEEEECCCCCCC
T ss_pred ----EEEEEEECCCCcc
Confidence 7888888766543
No 235
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=106.11 Aligned_cols=83 Identities=28% Similarity=0.342 Sum_probs=73.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
......++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----K 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----C
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 3445678999999999999999999999999999999988753 4699999999999999999999999999 7
Q ss_pred EEEEeecCCCC
Q 026659 180 YVRVREYDSRR 190 (235)
Q Consensus 180 ~i~v~~~~~~~ 190 (235)
.|+|..+....
T Consensus 86 ~l~v~~a~~~~ 96 (105)
T 1x5u_A 86 PIRVNKASAHN 96 (105)
T ss_dssp BCEEEETTTTS
T ss_pred EEEEEECCCCC
Confidence 88888876554
No 236
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-16 Score=109.33 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=74.7
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
+.....++|||+|||..+++++|.++|..||.|..+.+..+.. +|||||+|.+.++|.+|+..|||..+.| .
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----K 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence 3445668999999999999999999999999999999998864 4699999999999999999999999999 7
Q ss_pred EEEEeecCCCCC
Q 026659 180 YVRVREYDSRRS 191 (235)
Q Consensus 180 ~i~v~~~~~~~s 191 (235)
.|+|..+.....
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 888888866543
No 237
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=105.83 Aligned_cols=83 Identities=20% Similarity=0.173 Sum_probs=73.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
..+.++|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|.+|+..|||..+.| +.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 3466899999999999999999999999999999998764 35799999999999999999999999999 789
Q ss_pred EEeecCCCCCc
Q 026659 182 RVREYDSRRSY 192 (235)
Q Consensus 182 ~v~~~~~~~sr 192 (235)
+|..+......
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99888766543
No 238
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=1.7e-16 Score=101.43 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=69.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
++|||+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.++|..|+..|||..+.| ..|+|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 5899999999999999999999999999999998754 4699999999999999999999999999 7888877
Q ss_pred cCCC
Q 026659 186 YDSR 189 (235)
Q Consensus 186 ~~~~ 189 (235)
++++
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 7554
No 239
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.7e-16 Score=102.53 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=72.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
....+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| +
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 3445678999999999999999999999999999999998754 3699999999999999999999999999 7
Q ss_pred EEEEeecCC
Q 026659 180 YVRVREYDS 188 (235)
Q Consensus 180 ~i~v~~~~~ 188 (235)
.|+|..++.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 888877653
No 240
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=4.8e-16 Score=103.96 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=71.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
...++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.|.. ...|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~-~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA-SSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC-SSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC-CccEEE
Confidence 4568999999999999999999999999999999998864 469999999999999999999999988721 135667
Q ss_pred eecCCCCC
Q 026659 184 REYDSRRS 191 (235)
Q Consensus 184 ~~~~~~~s 191 (235)
..+.....
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 77665544
No 241
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=105.87 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=68.9
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCC--eecCccceeEEEE
Q 026659 107 RSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 183 (235)
Q Consensus 107 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~--~~~g~~~~~~i~v 183 (235)
.+..+|||+|||+ .+++++|.++|.+||.|..+.++.+. +||||+|.+.++|..|+..||+. .+.| +.|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFG----KPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECC----cEEEE
Confidence 4568999999999 99999999999999999999998764 59999999999999999999875 4888 78888
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..++...
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 8876543
No 242
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=103.56 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=67.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCe--ecCccceeEEEEe
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRVR 184 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~--~~g~~~~~~i~v~ 184 (235)
+++.+|||+|||..+++++|.++|.+||.|..+.+.++ +|+|||+|.+.++|..|+..|++.. +.| +.|+|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEE
Confidence 45679999999999999999999999999999998854 5699999999999999999999986 678 788888
Q ss_pred ecCC
Q 026659 185 EYDS 188 (235)
Q Consensus 185 ~~~~ 188 (235)
.++.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 7754
No 243
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=5.7e-17 Score=120.56 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. +|..+.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999954 577899999999999999999995 8999999999999998
Q ss_pred CCCCC
Q 026659 82 GGRRH 86 (235)
Q Consensus 82 ~~~~~ 86 (235)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76554
No 244
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-16 Score=102.45 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
....++|||+|||..+++++|.++|.+||.|..+.+.++ ||||+|.+.++|..|+..|||..+.| ..|+|..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 345679999999999999999999999999999999855 99999999999999999999999999 7888888
Q ss_pred cCCCC
Q 026659 186 YDSRR 190 (235)
Q Consensus 186 ~~~~~ 190 (235)
.....
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76654
No 245
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=5.2e-17 Score=118.51 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccC---CceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~i~v~~ 79 (235)
+.++|||+|||+.+|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999954 4677899999999999999999999998775 49999999
Q ss_pred cc
Q 026659 80 AH 81 (235)
Q Consensus 80 ~~ 81 (235)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 246
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=6.7e-17 Score=117.19 Aligned_cols=77 Identities=32% Similarity=0.526 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCC--ceEEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVE 78 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~ 78 (235)
.+.++|||+|||..+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.| +.|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999854 56778999999999999999999999999987 999999
Q ss_pred ec
Q 026659 79 LA 80 (235)
Q Consensus 79 ~~ 80 (235)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 247
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-16 Score=103.80 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=68.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCe--ecCccceeEEEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRV 183 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~--~~g~~~~~~i~v 183 (235)
..+..+|||+|||..+++++|.++|.+||.|..+.+..+ ++||||+|.+.++|..|+..|++.. +.| +.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG----QQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 345689999999999999999999999999999988765 5699999999999999999997654 788 67888
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
.....+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 8776544
No 248
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=104.54 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=72.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEE-EEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~-~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
+.++|||+|||..+++++|.++|.+||.|..+ .+..+. ..+||||+|.+.++|.+|+..|||..+.| ..|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 46799999999999999999999999999999 888774 24699999999999999999999999999 7888
Q ss_pred EeecCCCCCc
Q 026659 183 VREYDSRRSY 192 (235)
Q Consensus 183 v~~~~~~~sr 192 (235)
|..+.....+
T Consensus 80 v~~a~~~~~~ 89 (96)
T 1x5t_A 80 VSYAFKKDSK 89 (96)
T ss_dssp EEESCCCCCC
T ss_pred EEEecccCCC
Confidence 8887665543
No 249
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=2e-16 Score=103.19 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=70.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC--CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~--~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
..+.++|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|..|+..|||..+.| ..|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG----REIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT----BCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 3566899999999999999999999999999999998754 34799999999999999999999999999 56777
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..++...
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 7665543
No 250
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=2.2e-16 Score=103.61 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| +.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG----RPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----CEE
Confidence 345678999999999999999999999999999999998764 4699999999999999999999999999 777
Q ss_pred EEeecC
Q 026659 182 RVREYD 187 (235)
Q Consensus 182 ~v~~~~ 187 (235)
+|..++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 777654
No 251
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.9e-16 Score=102.64 Aligned_cols=79 Identities=8% Similarity=0.101 Sum_probs=69.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhc--CCeecCccceeEEEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYVRV 183 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~--g~~~~g~~~~~~i~v 183 (235)
..+..+|||+|||..+++++|.++|.+||.|..+.+..+ +|||||+|.+.++|..|+..|+ +..+.| +.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEEE
Confidence 345679999999999999999999999999999988876 6799999999999999999875 677898 78888
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..+..+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 8876554
No 252
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=1.9e-16 Score=104.16 Aligned_cols=78 Identities=12% Similarity=0.208 Sum_probs=71.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
+++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| +.|+|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 46899999999999999999999999999999988753 5799999999999999999999999999 788888
Q ss_pred ecCCCC
Q 026659 185 EYDSRR 190 (235)
Q Consensus 185 ~~~~~~ 190 (235)
.+...+
T Consensus 78 ~a~~~~ 83 (96)
T 2x1f_A 78 YSSNSD 83 (96)
T ss_dssp ECSCSS
T ss_pred EcCCCC
Confidence 876654
No 253
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-16 Score=104.21 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=70.4
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCC
Q 026659 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRS 170 (235)
Q Consensus 103 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~ 170 (235)
..+....++|||+|||..+++++|.++|.+||.|.. +.+..+.. .|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344566789999999999999999999999999999 99998754 469999999999999999999999
Q ss_pred eecCccceeEEEEeec
Q 026659 171 EFRNAFSRSYVRVREY 186 (235)
Q Consensus 171 ~~~g~~~~~~i~v~~~ 186 (235)
.+.| +.|+|..+
T Consensus 87 ~~~g----~~l~V~~A 98 (99)
T 2la6_A 87 EFSG----NPIKVSFA 98 (99)
T ss_dssp BSSS----SBCEEEEC
T ss_pred EeCC----cEEEEEec
Confidence 9999 56666654
No 254
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=107.51 Aligned_cols=79 Identities=6% Similarity=0.076 Sum_probs=69.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcC--CeecCccceeEEEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRV 183 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g--~~~~g~~~~~~i~v 183 (235)
..+..+|||+|||+.+++++|.++|.+||.|..+.++.+ +|||||+|.+.++|.+|+..|++ ..+.| +.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECC----eEEEE
Confidence 445689999999999999999999999999999999876 57999999999999999999884 67888 67888
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..+..+.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 8876544
No 255
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=2.2e-16 Score=101.42 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=68.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 4567999999999999999999999999999999987743 4699999999999999999999999999 6777
Q ss_pred Eeec
Q 026659 183 VREY 186 (235)
Q Consensus 183 v~~~ 186 (235)
|..+
T Consensus 81 v~~a 84 (85)
T 3mdf_A 81 VNLA 84 (85)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7654
No 256
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=3.2e-16 Score=105.71 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
....++|||+|||.. +++++|.++|.+||.|..+.+ ..+||||+|.+.++|..|+..|||..+.| ..|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG----QTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT----EECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 345579999999999 999999999999999999998 45699999999999999999999999999 788888
Q ss_pred ecCCCC
Q 026659 185 EYDSRR 190 (235)
Q Consensus 185 ~~~~~~ 190 (235)
..+..+
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 876443
No 257
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=2.5e-16 Score=105.72 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 103 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
++...+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..|||..+.| .
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG----R 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC----c
Confidence 34456778999999999999999999999999999999998853 3699999999999999999999999999 6
Q ss_pred EEEEeec
Q 026659 180 YVRVREY 186 (235)
Q Consensus 180 ~i~v~~~ 186 (235)
.|+|..+
T Consensus 99 ~l~V~~a 105 (107)
T 3ulh_A 99 PMNIQLV 105 (107)
T ss_dssp ECEEEEE
T ss_pred EEEEEEe
Confidence 7777654
No 258
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-16 Score=105.37 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=70.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
....++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS----SBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC----cEE
Confidence 34568999999999999999999999999999999998765 4799999999999999999999999999 667
Q ss_pred EEeecCCC
Q 026659 182 RVREYDSR 189 (235)
Q Consensus 182 ~v~~~~~~ 189 (235)
+|..+...
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 77666443
No 259
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=9.6e-17 Score=118.90 Aligned_cols=77 Identities=16% Similarity=0.389 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCC
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (235)
.++|||+|||+++|+++|.++|++||+|..|.+.. ++.++|||||+|.++++|.+|+..+ +..+.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999954 4678899999999999999999855 56899999999998754
No 260
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=2.2e-16 Score=106.03 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+. .|||||+|.+.++|..|+..|||..+.| ..|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34566899999999999999999999999999999988 5799999999999999999999999999 788888
Q ss_pred ecCCCCC
Q 026659 185 EYDSRRS 191 (235)
Q Consensus 185 ~~~~~~s 191 (235)
..+..+.
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 8766543
No 261
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-16 Score=105.92 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=72.5
Q ss_pred CCCceEEEeCCCCCCCHHHHH---HHHHhcCCceEEEEEecCC-------ccEEEEEEcCHHHHHHHHHHhcCCeecCcc
Q 026659 107 RSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~g~v~~~~~~~~~~-------~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~ 176 (235)
....+|||+|||..+++++|. ++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..+.|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g-- 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG-- 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT--
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC--
Confidence 456799999999999999999 9999999999999987753 2799999999999999999999999999
Q ss_pred ceeEEEEeecCCCC
Q 026659 177 SRSYVRVREYDSRR 190 (235)
Q Consensus 177 ~~~~i~v~~~~~~~ 190 (235)
+.|+|..+..+.
T Consensus 91 --r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 --RTLKASLGTTKY 102 (111)
T ss_dssp --EEEEEESCCCCS
T ss_pred --EEEEEEeccccc
Confidence 789998887665
No 262
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.2e-16 Score=103.10 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=71.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
..+.++|||+|||..+++++|.++|.+||.|..+.+..+ ++||||+|.+.++|.+|+..|||..+.| ..|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRG----KQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTT----BCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCC----ceEEEEE
Confidence 345679999999999999999999999999999998865 5699999999999999999999999999 6788888
Q ss_pred cCCCCC
Q 026659 186 YDSRRS 191 (235)
Q Consensus 186 ~~~~~s 191 (235)
......
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 766543
No 263
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=1.1e-16 Score=115.76 Aligned_cols=76 Identities=32% Similarity=0.588 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce--EEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--LRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~--i~v~~ 79 (235)
+.++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999854 5677899999999999999999999999999965 88877
Q ss_pred c
Q 026659 80 A 80 (235)
Q Consensus 80 ~ 80 (235)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 264
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5e-16 Score=103.68 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=71.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHh-cCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCe-ecCccceeE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSE-FRNAFSRSY 180 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~-~~g~~~~~~ 180 (235)
..+.++|||+|||..+++++|.++|.+ ||.|..+.+..+.. .|||||+|.+.++|..|+..|||.. +.| ..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g----~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS----KP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----SC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC----Ee
Confidence 345679999999999999999999999 99999999998753 3699999999999999999999999 999 56
Q ss_pred EEEeecCCCC
Q 026659 181 VRVREYDSRR 190 (235)
Q Consensus 181 i~v~~~~~~~ 190 (235)
|+|..+....
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 7777765444
No 265
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=2.5e-16 Score=109.15 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=72.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
...+.++|||+|||..+++++|.++|.+||.|..+.+..+. ..|||||+|.+.++|.+|+..|||..+.| ..
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 34566899999999999999999999999999999999774 35799999999999999999999999999 67
Q ss_pred EEEeecCCCC
Q 026659 181 VRVREYDSRR 190 (235)
Q Consensus 181 i~v~~~~~~~ 190 (235)
|+|..+...+
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 8887765543
No 266
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.7e-16 Score=102.24 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=71.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEE-EEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~-~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
.....++|||+|||..+++++|.++|.+||.|..+ .+..+...+.|||+|.+.++|..|+..|||..+.| +.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN----FTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 34456899999999999999999999999999999 58888777789999999999999999999999999 67777
Q ss_pred eecCCC
Q 026659 184 REYDSR 189 (235)
Q Consensus 184 ~~~~~~ 189 (235)
....+.
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 766543
No 267
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.8e-16 Score=102.40 Aligned_cols=84 Identities=8% Similarity=0.091 Sum_probs=73.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCce-EEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~-~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
.+.++|||+|||..+++++|.++|.+||.|. .+.+..+.. .|||||+|.+.++|.+|+..|||..+.|......|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4567999999999999999999999999999 999998863 36999999999999999999999999996544448
Q ss_pred EEeecCCCC
Q 026659 182 RVREYDSRR 190 (235)
Q Consensus 182 ~v~~~~~~~ 190 (235)
+|..+....
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 887775543
No 268
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-15 Score=100.13 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhc--CCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
..+.++|||+|||..+++++|.++|.+| |.|..+.+. .+||||+|.+.++|..|+..|||..+.| ..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 3456899999999999999999999999 889888775 3499999999999999999999999999 78999
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..++...
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 8876554
No 269
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-16 Score=102.62 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=68.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcC-CeecCccceeEEEEe
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR-SEFRNAFSRSYVRVR 184 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g-~~~~g~~~~~~i~v~ 184 (235)
...++|||+|||..+++++|.++|.+||. |..+.+. ..+||||+|.+.++|.+|+..||| ..+.| ..|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEEE
Confidence 44579999999999999999999999999 6655553 356999999999999999999999 99999 788888
Q ss_pred ecCCCCCc
Q 026659 185 EYDSRRSY 192 (235)
Q Consensus 185 ~~~~~~sr 192 (235)
.+..+..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 88665543
No 270
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=9.4e-17 Score=104.44 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=67.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhc-CCeecCccceeEEEE
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLD-RSEFRNAFSRSYVRV 183 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~-g~~~~g~~~~~~i~v 183 (235)
.+|||+|||..+++++|.++|.+|| .|..+.++.+. .+|||||+|.+.++|.+|++.++ +..+.| +.|+|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5899999999999999999999999 89999998764 35799999999999999999874 567888 78999
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..+.+++
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 8876554
No 271
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=7.4e-16 Score=101.43 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=68.1
Q ss_pred CCCCCCceEEEeCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 104 VSRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
...++.++|||+|||. .+++++|.++|.+||.|..+.+. .|||||+|.+.++|.+|+..|||..+.| ..|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT----EECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 3455778999999998 99999999999999999999884 5699999999999999999999999999 7788
Q ss_pred EeecCC
Q 026659 183 VREYDS 188 (235)
Q Consensus 183 v~~~~~ 188 (235)
|..++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 877654
No 272
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.67 E-value=2.4e-16 Score=104.98 Aligned_cols=80 Identities=24% Similarity=0.401 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEecC-----CCCCCeEEEEecCHHHHHHHHHhcCC
Q 026659 3 SRSSRTLYVGNL--PGDTR--------MREVEDLFYKYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDG 67 (235)
Q Consensus 3 ~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~i~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~g 67 (235)
+.|++.|.+.|+ |..+. +++|+++|++||+|.+|.+..+ +.++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 568999999998 43443 3689999999999999999653 35789999999999999999999999
Q ss_pred CccCCceEEEEeccC
Q 026659 68 YNFDGYRLRVELAHG 82 (235)
Q Consensus 68 ~~~~g~~i~v~~~~~ 82 (235)
..+.|+.|.|.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999753
No 273
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-16 Score=102.79 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=70.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
.....++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|.+|+..|||..+.| +.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~ 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RK 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 345568999999999999999999999999998777666543 4799999999999999999999999999 78
Q ss_pred EEEeecCCCC
Q 026659 181 VRVREYDSRR 190 (235)
Q Consensus 181 i~v~~~~~~~ 190 (235)
|+|.....+.
T Consensus 87 l~V~~a~~~~ 96 (98)
T 2cqp_A 87 VKLVLGSGPS 96 (98)
T ss_dssp CEEEESSCSS
T ss_pred EEEEEcCCCC
Confidence 8888775443
No 274
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.3e-16 Score=104.52 Aligned_cols=82 Identities=7% Similarity=0.077 Sum_probs=71.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCc----eEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v----~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.+.++|||+|||..+++++|.++|.+||.| ..+.+......|||||+|.+.++|..|+..|||..+.| ..|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 456899999999999999999999999998 56676666667899999999999999999999999999 6788
Q ss_pred EeecCCCCCc
Q 026659 183 VREYDSRRSY 192 (235)
Q Consensus 183 v~~~~~~~sr 192 (235)
|..+.....+
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 8887665543
No 275
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=2.9e-16 Score=123.40 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccC-CceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~ 81 (235)
++++|||+|||.++|+++|+++|++||.|..|.+..+. +|||||+|.+.++|.+|+..|||..+. |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 57899999999999999999999999999999997543 689999999999999999999999999 9999999986
No 276
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-16 Score=104.78 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~--~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+.. +|||||+|.+.++|.+|+..|||..+.| +.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 345668999999999999999999999999999999987754 5799999999999999999999999999 7888
Q ss_pred EeecCCC
Q 026659 183 VREYDSR 189 (235)
Q Consensus 183 v~~~~~~ 189 (235)
|..+..+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 8776543
No 277
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=5.3e-16 Score=104.62 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=72.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
...+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QT 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 345668999999999999999999999999999999987753 4799999999999999999999999999 78
Q ss_pred EEEeecCCCC
Q 026659 181 VRVREYDSRR 190 (235)
Q Consensus 181 i~v~~~~~~~ 190 (235)
|+|.......
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 8887765543
No 278
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-15 Score=103.62 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=73.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCce--------EEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeec
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~--------~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~ 173 (235)
....++|||+|||..+++++|.++|.+||.|. .+.+..+.. .|||||+|.+.++|.+|+..|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45668999999999999999999999999999 688887743 469999999999999999999999999
Q ss_pred CccceeEEEEeecCCCCCc
Q 026659 174 NAFSRSYVRVREYDSRRSY 192 (235)
Q Consensus 174 g~~~~~~i~v~~~~~~~sr 192 (235)
| +.|+|...+.....
T Consensus 92 g----~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 G----SKLKVSLARKKPPM 106 (113)
T ss_dssp T----EECEEECSSCCCCS
T ss_pred C----CEEEEEECCCCCCC
Confidence 9 78888887765543
No 279
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=117.52 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccC-CceEEEEeccC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~~ 82 (235)
++++|||+|||..+++++|+++|++|| .|..+.+..+ .+|||||+|.+.++|.+|+..|||..+. |+.|.|.|+.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 588999999999999999999999999 9999999653 3799999999999999999999999999 99999999875
Q ss_pred C
Q 026659 83 G 83 (235)
Q Consensus 83 ~ 83 (235)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 3
No 280
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=102.27 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=71.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
...+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| +.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~~ 97 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG----RP 97 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 345668999999999999999999999999999999998754 3699999999999999999999999999 67
Q ss_pred EEEeecCCC
Q 026659 181 VRVREYDSR 189 (235)
Q Consensus 181 i~v~~~~~~ 189 (235)
|+|.....+
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 778776543
No 281
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=99.05 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=71.3
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
.+....++|||+|||..+++++|.++|..| .|..+.++.+.. .|+|||+|.+.++|.+|+. |||..+.| +.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~ 78 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RY 78 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cE
Confidence 334566899999999999999999999999 999999998743 4699999999999999999 99999999 78
Q ss_pred EEEeecCCCC
Q 026659 181 VRVREYDSRR 190 (235)
Q Consensus 181 i~v~~~~~~~ 190 (235)
|+|..+..++
T Consensus 79 i~v~~a~~~~ 88 (91)
T 2dgw_A 79 IEVFREKSGP 88 (91)
T ss_dssp EEEEEESSCC
T ss_pred EEEEECCcCC
Confidence 8888776553
No 282
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=103.32 Aligned_cols=79 Identities=18% Similarity=0.295 Sum_probs=67.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEec---CCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~---~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
..+.++|||+|||..+++++|.++|.+||.|. +..+ ...+||||+|.+.++|.+|+..|||..+.| ..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEE
Confidence 34668999999999999999999999999873 3333 345799999999999999999999999999 7889
Q ss_pred EeecCCCCC
Q 026659 183 VREYDSRRS 191 (235)
Q Consensus 183 v~~~~~~~s 191 (235)
|.....+..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 988866543
No 283
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.7e-16 Score=102.75 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 106 RRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 106 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
..+.++|||+|||. .+++++|.++|.+||.|..+.+. +|||||+|.+.++|..|+..|||..+.| ..|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG----KKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT----TTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC----cEEEEE
Confidence 34568999999998 99999999999999999999985 5699999999999999999999999999 456666
Q ss_pred ecCCC
Q 026659 185 EYDSR 189 (235)
Q Consensus 185 ~~~~~ 189 (235)
.....
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 55443
No 284
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8.5e-16 Score=98.65 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHh-cCCeecCccceeEEEEe
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l-~g~~~~g~~~~~~i~v~ 184 (235)
....++|||+|||..+++++|.++|.+||.|..+.+..+ +++|||+|.+.++|..|+..| +|..+.| ..|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g----~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNG----RRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETT----EECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECC----CEEEEE
Confidence 355679999999999999999999999999999999875 569999999999999999999 9999999 666666
Q ss_pred ec
Q 026659 185 EY 186 (235)
Q Consensus 185 ~~ 186 (235)
.+
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 285
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.8e-16 Score=102.80 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=67.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
...++|||+|||..+++++|.++|.+||.|..+.+. ..+|||||+|.+.++|..|+..|||..+.| ..|+|..+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEec
Confidence 456799999999999999999999999999999988 456799999999999999999999999999 67777665
Q ss_pred CC
Q 026659 187 DS 188 (235)
Q Consensus 187 ~~ 188 (235)
+.
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 286
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=4.2e-15 Score=102.37 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=72.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
......++|||+|||..+++++|.++|.+||.|..+.+..+. ..|||||+|.+.++|.+|+..|||..+.| +.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RP 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 445677899999999999999999999999999999999875 34799999999999999999999999999 67
Q ss_pred EEEeecCCC
Q 026659 181 VRVREYDSR 189 (235)
Q Consensus 181 i~v~~~~~~ 189 (235)
|+|..+...
T Consensus 106 l~V~~a~~~ 114 (124)
T 2kt5_A 106 MDIQLVASQ 114 (124)
T ss_dssp EEEEEECCT
T ss_pred EEEEEeCCC
Confidence 888776543
No 287
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=102.05 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=67.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCC--ceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCe----ecCcc
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSE----FRNAF 176 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~--v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~----~~g~~ 176 (235)
..-.+|||+|||+.+|+++|.++|++||. +..+.+.+|+. +|||||+|.+.++|.+|++.|||.. +.|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-- 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-- 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--
Confidence 44568999999999999999999999995 67888888753 4799999999999999999999984 778
Q ss_pred ceeEEEEeecCC
Q 026659 177 SRSYVRVREYDS 188 (235)
Q Consensus 177 ~~~~i~v~~~~~ 188 (235)
+.|.|..++.
T Consensus 85 --r~i~V~~Aks 94 (95)
T 2lkz_A 85 --KTIGVDFAKS 94 (95)
T ss_dssp --EEEEEEECCC
T ss_pred --EEEEEEEccC
Confidence 7888887653
No 288
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=8.8e-16 Score=109.17 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
.-.+|||+||++.+++++|.++|++||.|..+.+..+..+++|||+|.+.++|..|++.|||..+.|. .+.|+|..++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS--CSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC--CcEEEEEEec
Confidence 34579999999999999999999999999999998777778999999999999999999999999641 1578888876
Q ss_pred CCC
Q 026659 188 SRR 190 (235)
Q Consensus 188 ~~~ 190 (235)
...
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 553
No 289
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=5.8e-16 Score=118.04 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccC-CceEEEEeccC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~~ 82 (235)
++++|||+|||..+++++|+++|++|| .|..|.+... .+|||||+|.+.++|.+|+..|||..+. |+.|.|.|+.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 478999999999999999999999999 9999999543 3799999999999999999999999999 99999999875
Q ss_pred C
Q 026659 83 G 83 (235)
Q Consensus 83 ~ 83 (235)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 290
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=1.5e-15 Score=108.81 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=72.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
.+.++|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|.+|+..|||..+.| ..|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 4568999999999999999999999999999999998864 3699999999999999999999999999 7888
Q ss_pred EeecCCCC
Q 026659 183 VREYDSRR 190 (235)
Q Consensus 183 v~~~~~~~ 190 (235)
|..+....
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 88876543
No 291
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-15 Score=101.29 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=72.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
......++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+.. |+..+.| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~ 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----R 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----E
Confidence 3445678999999999999999999999999999999998854 36999999999999999998 9999999 7
Q ss_pred EEEEeecCCCC
Q 026659 180 YVRVREYDSRR 190 (235)
Q Consensus 180 ~i~v~~~~~~~ 190 (235)
.|.|.....+.
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 88888776554
No 292
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=102.93 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=63.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
.+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 4567999999999999999999999999999999988753 5799999999999999999999999998
No 293
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-15 Score=98.25 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=70.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
..+.++|||+|+ .+++++|.++|.+||.|..+.+. ..++||||+|.+.++|.+|+..|||..+.| ..|+|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEE
Confidence 345679999996 89999999999999999999885 556799999999999999999999999999 7899988
Q ss_pred cCCCCCcCC
Q 026659 186 YDSRRSYSR 194 (235)
Q Consensus 186 ~~~~~sr~r 194 (235)
+.......+
T Consensus 84 a~~~~~~~~ 92 (97)
T 1x5p_A 84 ARKQPMLDS 92 (97)
T ss_dssp CSSCCCCCS
T ss_pred CCCCCCCCC
Confidence 876654443
No 294
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=1.1e-15 Score=104.48 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=69.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..+.| +.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT----KR 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 345668999999999999999999999999999999987743 5799999999999999999999999999 66
Q ss_pred EEEeec
Q 026659 181 VRVREY 186 (235)
Q Consensus 181 i~v~~~ 186 (235)
|+|...
T Consensus 112 l~V~~a 117 (118)
T 2khc_A 112 LKVQLK 117 (118)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 666654
No 295
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=2.8e-16 Score=102.03 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=64.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC--CceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
.+|||+|||..+++++|.++|.+|| .|..+.+..+.. .|||||+|.+.++|.+|++.|||..+.| +.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g----r~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS----CCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC----EEEEE
Confidence 4799999999999999999999999 999999998853 4699999999999999999999999999 67777
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
....+..
T Consensus 78 ~~~~~~~ 84 (90)
T 3p5t_L 78 TPSNKLE 84 (90)
T ss_dssp CCC----
T ss_pred EECCCCc
Confidence 7765543
No 296
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=105.31 Aligned_cols=81 Identities=10% Similarity=0.125 Sum_probs=69.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHHhcCCceEEEEEec-CCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~-~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
..+..+|||+|||..+++++|+ ++|++||.|..|.+... ..+|||||+|.+.++|..|+..|||..+.| +.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g----r~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG----NP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC----CE
Confidence 3456799999999999998866 69999999999888653 456899999999999999999999999999 67
Q ss_pred EEEeecCCCC
Q 026659 181 VRVREYDSRR 190 (235)
Q Consensus 181 i~v~~~~~~~ 190 (235)
|+|..+....
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 8888776544
No 297
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=2.9e-16 Score=117.50 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEEecC-CCCCCeEEEEecCHHHHHHHHHhcCCCccCCc----eEEE
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPI--VDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY----RLRV 77 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i--~~i~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----~i~v 77 (235)
|+++|||+|||+++|+++|+++|++||.| ..+.+..+ +..+|||||+|.+.++|.+|+..|||..+.|. ++.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 56789999999999999999999999999 88888654 45569999999999999999999999999875 6777
Q ss_pred Eec
Q 026659 78 ELA 80 (235)
Q Consensus 78 ~~~ 80 (235)
+++
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 765
No 298
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.2e-15 Score=99.98 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=71.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
......++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|+..+++ .+.| .
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----R 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----E
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----E
Confidence 3345678999999999999999999999999999999988753 46999999999999999999998 8998 7
Q ss_pred EEEEeecCCC
Q 026659 180 YVRVREYDSR 189 (235)
Q Consensus 180 ~i~v~~~~~~ 189 (235)
.|+|..+...
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 8888877543
No 299
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=2.1e-15 Score=97.22 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=66.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
..+.++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+. +++..+.| +.|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG----RVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC----EEE
Confidence 34567999999999999999999999999999999998764 4699999999999999995 58888999 677
Q ss_pred EEee
Q 026659 182 RVRE 185 (235)
Q Consensus 182 ~v~~ 185 (235)
+|..
T Consensus 83 ~v~~ 86 (87)
T 3s7r_A 83 DPKK 86 (87)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 300
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.4e-15 Score=97.24 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=69.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+. ++..+.| ..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eE
Confidence 345567999999999999999999999999999999998754 4699999999999999998 4778888 78
Q ss_pred EEEeecCCCC
Q 026659 181 VRVREYDSRR 190 (235)
Q Consensus 181 i~v~~~~~~~ 190 (235)
|+|.....+.
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cqg_A 85 CDCKLPNSKQ 94 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEEecCCCC
Confidence 8888876654
No 301
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-15 Score=102.40 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
...++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+.. ++..+.| +.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEE
Confidence 3457999999999999999999999999999999998753 46999999999999999987 9999999 7899
Q ss_pred EeecCCCCC
Q 026659 183 VREYDSRRS 191 (235)
Q Consensus 183 v~~~~~~~s 191 (235)
|.....+..
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 988866654
No 302
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=101.52 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=67.3
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcC--CeecCccceeEEE
Q 026659 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVR 182 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g--~~~~g~~~~~~i~ 182 (235)
..+.++|||+|||.. +++++|.++|.+||.|..+.+... +|||||+|.+.++|..|+..||+ ..+.| +.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQG----RCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 456789999999998 999999999999999999999754 57999999999999999998865 45888 6777
Q ss_pred EeecCCC
Q 026659 183 VREYDSR 189 (235)
Q Consensus 183 v~~~~~~ 189 (235)
|..+...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 7776543
No 303
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=2.2e-15 Score=102.41 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=70.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
..+..+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34567999999999999999999999999999999987643 5799999999999999999999999999 677777
Q ss_pred ecCCC
Q 026659 185 EYDSR 189 (235)
Q Consensus 185 ~~~~~ 189 (235)
.....
T Consensus 81 ~a~~~ 85 (115)
T 3lqv_A 81 YYNAN 85 (115)
T ss_dssp ECCHH
T ss_pred EecCC
Confidence 76543
No 304
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=2.9e-15 Score=96.99 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=68.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
.++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+ .|||..+.| +.|+|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 46899999999999999999999999999999998753 569999999999999999 999999999 788888
Q ss_pred ecCC
Q 026659 185 EYDS 188 (235)
Q Consensus 185 ~~~~ 188 (235)
..+.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 7754
No 305
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-16 Score=106.72 Aligned_cols=80 Identities=6% Similarity=0.145 Sum_probs=69.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceE--EEEEecC----CccEEEEEEcCHHHHHHHHHHhcCC----eecCc
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRS----EFRNA 175 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~----~~~g~ 175 (235)
.....+|||+|||..+++++|.++|.+||.|.. +.++.+. .+|||||+|.+. +|.+|+..|||. .+.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g- 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG- 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC-
Confidence 345679999999999999999999999999976 8998876 347999999999 999999999999 9999
Q ss_pred cceeEEEEeecCCCC
Q 026659 176 FSRSYVRVREYDSRR 190 (235)
Q Consensus 176 ~~~~~i~v~~~~~~~ 190 (235)
+.|+|.......
T Consensus 98 ---r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 ---KTINVEFAKGSK 109 (131)
T ss_dssp ---CCCCCEECCCSC
T ss_pred ---EEEEEEECCCCC
Confidence 677777765543
No 306
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-16 Score=104.33 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=67.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
...++|||+|||..+++++|.++|.+||.|..+.+.. .+++|||+|.+.++|..|+..|||..+.| +.|.|..+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHH----VPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSS----SBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECC----eEEEEEEC
Confidence 3567999999999999999999999999999988764 45699999999999999999999999999 56777665
Q ss_pred CC
Q 026659 187 DS 188 (235)
Q Consensus 187 ~~ 188 (235)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 43
No 307
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=101.30 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=65.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
....+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+. ++|..+.| +.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g----r~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE----TDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT----TTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC----EEEEE
Confidence 3457999999999999999999999999999999998753 5799999999999999998 99999999 45555
Q ss_pred ee
Q 026659 184 RE 185 (235)
Q Consensus 184 ~~ 185 (235)
..
T Consensus 84 ~~ 85 (103)
T 1s79_A 84 LF 85 (103)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 308
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-15 Score=100.10 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=66.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
.....++|||.|||+.+++++|.++|.+||. +.+.++.+.. +|||||+|.+.++|.+|| .+|+..+.| +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i 84 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQH----RYV 84 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSS----SCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECC----cEE
Confidence 3456689999999999999999999999995 4899988763 369999999999999999 589999999 566
Q ss_pred EEeecCC
Q 026659 182 RVREYDS 188 (235)
Q Consensus 182 ~v~~~~~ 188 (235)
+|.....
T Consensus 85 ~V~~~~~ 91 (102)
T 1wez_A 85 ELFLNST 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 6665543
No 309
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=3.1e-15 Score=103.02 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=69.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
..++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+ .|||..+.| ..|+|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEE
Confidence 457999999999999999999999999999999988743 469999999999999999 899999999 78888
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
...+...
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 8876443
No 310
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=105.15 Aligned_cols=79 Identities=23% Similarity=0.214 Sum_probs=70.0
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CccEEEEEEcCHHHHHHHHHHhcCCeecCccce
Q 026659 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (235)
Q Consensus 103 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~ 178 (235)
.....+..+|||+|||..+++++|.++|.+||.|..+.+..+. ..|||||+|.+.++|.+|+..|||..+.|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 132 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---- 132 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT----
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 3445567899999999999999999999999999999998774 35799999999999999999999999999
Q ss_pred eEEEEee
Q 026659 179 SYVRVRE 185 (235)
Q Consensus 179 ~~i~v~~ 185 (235)
+.|+|..
T Consensus 133 ~~l~v~~ 139 (140)
T 2ku7_A 133 RTIRVNL 139 (140)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 6777754
No 311
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=101.52 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=66.2
Q ss_pred CCCceEEE--eCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCee-cCccceeEEEE
Q 026659 107 RSDYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF-RNAFSRSYVRV 183 (235)
Q Consensus 107 ~~~~~l~v--~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~-~g~~~~~~i~v 183 (235)
.+..+||| +||+..+++++|+++|.+||.|..+.+.. .+|||||+|.+.++|.+|+..|||..+ ..-.....+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 44678999 67999999999999999999999987764 357999999999999999999999988 21111256667
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
......+
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 6665443
No 312
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=100.07 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=68.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
..+..+|||+|||..+++++|.++|.+||.|..+ .......|||||+|.+.++|..|+..|||..+.| +.|+|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 3466899999999999999999999999998877 3333445799999999999999999999999999 7888888
Q ss_pred cCCCC
Q 026659 186 YDSRR 190 (235)
Q Consensus 186 ~~~~~ 190 (235)
+..+.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 75543
No 313
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=101.27 Aligned_cols=78 Identities=27% Similarity=0.313 Sum_probs=68.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
......+|||+|||+.+++++|.++|..| .|..+.++.+.. +|+|||+|.+.++|.+|+ .+|+..+.| ++|
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i 85 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ----RYV 85 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT----EEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC----eEE
Confidence 33456799999999999999999999999 899999987753 479999999999999999 799999999 788
Q ss_pred EEeecCC
Q 026659 182 RVREYDS 188 (235)
Q Consensus 182 ~v~~~~~ 188 (235)
.|.....
T Consensus 86 ~V~~a~~ 92 (109)
T 2dnn_A 86 EVSPATE 92 (109)
T ss_dssp EEEECCH
T ss_pred EEEECCc
Confidence 8876643
No 314
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=1e-15 Score=100.42 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=66.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
++.++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|.+|+..|||..+.| +.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKVK 88 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC----cEEE
Confidence 3458999999999999999999999999998877776543 3699999999999999999999999999 7787
Q ss_pred EeecC
Q 026659 183 VREYD 187 (235)
Q Consensus 183 v~~~~ 187 (235)
|....
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 77653
No 315
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=98.69 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=59.8
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHHhcCCceEEEEEec--CCccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 110 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 110 ~~l~v~nl~~~~------t~~~l~~~f~~~g~v~~~~~~~~--~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
++|||+|||..+ ++++|.++|.+||.|..+.+..+ ...|||||+|.+.++|..|+..|||..+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 77999999999999999988743 2357999999999999999999999999994
No 316
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=1.3e-15 Score=100.33 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=70.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHHhcCCceEEEEEec-CCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~-~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
..+.++|||+|||..+++++|. ++|.+||.|..+.+... ...|||||+|.+.++|..|+..|||..+.| ..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----cE
Confidence 3566899999999999999999 99999999999988742 234799999999999999999999999999 78
Q ss_pred EEEeecCCCC
Q 026659 181 VRVREYDSRR 190 (235)
Q Consensus 181 i~v~~~~~~~ 190 (235)
|+|.......
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 8888776554
No 317
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=3.2e-15 Score=101.93 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=70.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC---ceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
+.....++|||+|||+.+++++|.++|..||. |..+.+..+.. +|||||+|.+.++|.+|+. +||..+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--- 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH--- 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC---
Confidence 44456789999999999999999999999998 89999998755 4699999999999999998 99999999
Q ss_pred eeEEEEeecCC
Q 026659 178 RSYVRVREYDS 188 (235)
Q Consensus 178 ~~~i~v~~~~~ 188 (235)
+.|+|.....
T Consensus 88 -r~i~V~~a~~ 97 (118)
T 2db1_A 88 -RYIEVFKSHR 97 (118)
T ss_dssp -EEEEEEEECH
T ss_pred -eEEEEEECCH
Confidence 7888876643
No 318
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=8.8e-15 Score=99.87 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=66.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccE-EEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCC
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~-~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (235)
..|||+||++.+++++|.++|++||.|..+.+... .|+ |||+|.+.++|..|+..|||..+.|.. +.|+|..++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEecC
Confidence 45789999999999999999999999999998764 375 999999999999999999999998731 3688887765
Q ss_pred CC
Q 026659 189 RR 190 (235)
Q Consensus 189 ~~ 190 (235)
..
T Consensus 102 ~~ 103 (124)
T 2e5i_A 102 TR 103 (124)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 319
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4e-15 Score=99.22 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=67.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceE-EEEEecC---CccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
+.....++|||+|||+.+++++|.++|.+||.|.. +.+..+. ..|||||+|.+.++|.+|+.. |+..+.| +
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g----r 84 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH----R 84 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS----S
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC----c
Confidence 44456789999999999999999999999999987 7777663 347999999999999999987 9999999 5
Q ss_pred EEEEeecCC
Q 026659 180 YVRVREYDS 188 (235)
Q Consensus 180 ~i~v~~~~~ 188 (235)
+|+|.....
T Consensus 85 ~i~v~~~~~ 93 (104)
T 1wg5_A 85 YIEIFKSSR 93 (104)
T ss_dssp CCEEEEECT
T ss_pred EEEEEECCH
Confidence 677766543
No 320
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=103.28 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=70.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
...++|||+|||..+++++|.++|..||.|..+.+..+.. .|||||+|.+.++|.+|+ .|||..+.| ..|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEE
Confidence 3457999999999999999999999999999999987654 479999999999999999 999999999 7888
Q ss_pred EeecCCCC
Q 026659 183 VREYDSRR 190 (235)
Q Consensus 183 v~~~~~~~ 190 (235)
|.......
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 88765543
No 321
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=4.4e-16 Score=103.16 Aligned_cols=79 Identities=18% Similarity=0.329 Sum_probs=65.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC-----CccEEEEEEcCHHHHHHHHHHhcCCeecCccce
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~ 178 (235)
......++|||+|||..+++++|.++|.+|| |..+.+..+. ..|||||+|.+.++|.+|+ .|||..+.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---- 87 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 87 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC----
Confidence 3445678999999999999999999999999 9999998775 2579999999999999999 999999999
Q ss_pred eEEEEeecCC
Q 026659 179 SYVRVREYDS 188 (235)
Q Consensus 179 ~~i~v~~~~~ 188 (235)
+.|+|..++.
T Consensus 88 ~~l~V~~a~~ 97 (100)
T 2j76_E 88 RRIRVDVADQ 97 (100)
T ss_dssp BCCCCEECCC
T ss_pred eEEEEEeccC
Confidence 5666666544
No 322
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=106.11 Aligned_cols=77 Identities=19% Similarity=0.110 Sum_probs=68.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcC--CceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
...+|||+|||..+++++|.++|..|| .|..+.++.+.. .|||||+|.+.++|.+|+..|||..+.| +.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----EKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEe
Confidence 457999999999999999999999999 999999998854 3699999999999999999999999999 788
Q ss_pred EEeecCC
Q 026659 182 RVREYDS 188 (235)
Q Consensus 182 ~v~~~~~ 188 (235)
+|..+..
T Consensus 130 ~V~~a~~ 136 (156)
T 3n9u_C 130 DVRPATR 136 (156)
T ss_dssp EEEECCH
T ss_pred EEEEcCC
Confidence 8877653
No 323
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=3.2e-15 Score=100.54 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=68.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
....++|||+|||..+++++|.++|..||.|..+.+..+.. .|||||+|.+.++|.+|+..+ +..+.| +.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEE
Confidence 34567999999999999999999999999999999998753 479999999999999999876 588999 788
Q ss_pred EEeecCCCCC
Q 026659 182 RVREYDSRRS 191 (235)
Q Consensus 182 ~v~~~~~~~s 191 (235)
+|.....+..
T Consensus 97 ~V~~a~~~~~ 106 (109)
T 2rs2_A 97 DPKVAFPRRA 106 (109)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 8888766543
No 324
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=7.2e-15 Score=100.72 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=68.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccE-EEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~-~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
-..|||+||++.+++++|.++|++||.|..+.+.... +++ |||+|.+.++|..|++.|||..+.|. ...|++..++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEEEEecC
Confidence 3578899999999999999999999999999887765 455 99999999999999999999999872 2578888876
Q ss_pred CCC
Q 026659 188 SRR 190 (235)
Q Consensus 188 ~~~ 190 (235)
...
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 554
No 325
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-14 Score=97.78 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCcc----cee
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAF----SRS 179 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~----~~~ 179 (235)
...++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.+.. ...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4567999999999999999999999999999999998853 369999999999999999999999997643 235
Q ss_pred EEEEeecCC
Q 026659 180 YVRVREYDS 188 (235)
Q Consensus 180 ~i~v~~~~~ 188 (235)
.|.+..+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 677766653
No 326
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.61 E-value=1.9e-15 Score=120.46 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=67.1
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccC---Cc--e
Q 026659 2 SSRSSRTLYVGN--LPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GY--R 74 (235)
Q Consensus 2 ~~~~~~~l~v~n--l~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~--~ 74 (235)
++.|+.+|||+| |+..+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++|+..|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 467899999999 578999999999999999999988754 5899999999999999999999998773 45 5
Q ss_pred EEEEecc
Q 026659 75 LRVELAH 81 (235)
Q Consensus 75 i~v~~~~ 81 (235)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6777764
No 327
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.7e-15 Score=96.29 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=62.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCcc-EEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~-~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
...+|||+|||..+++++|.++|.+||.|..+ ..+...+ ||||+|.+.++|..|+. |||..+.| +.|+|...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEEEC
Confidence 44699999999999999999999999999987 4333322 99999999999999999 99999999 67777655
Q ss_pred C
Q 026659 187 D 187 (235)
Q Consensus 187 ~ 187 (235)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 328
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=4.6e-15 Score=99.11 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=67.9
Q ss_pred CCCceEEEeCCCCCC------CHHHHHHHHHhcCCceEEEEEec--CCccEEEEEEcCHHHHHHHHHHhcCCeecCccce
Q 026659 107 RSDYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~------t~~~l~~~f~~~g~v~~~~~~~~--~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~ 178 (235)
...++|||+|||..+ ++++|.++|.+||.|..+.+... ...|||||+|.+.++|..|+..|||..+.|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g---- 88 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---- 88 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST----
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC----
Confidence 345799999999999 78999999999999999988843 235799999999999999999999999999
Q ss_pred e-EEEEeecCC
Q 026659 179 S-YVRVREYDS 188 (235)
Q Consensus 179 ~-~i~v~~~~~ 188 (235)
+ .|+|..+..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 6 788876643
No 329
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.6e-15 Score=99.45 Aligned_cols=79 Identities=28% Similarity=0.365 Sum_probs=70.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
..++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..|+|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG----RALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS----SCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 457899999999999999999999999999999998753 4699999999999999999999999999 67888
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..+....
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 8776554
No 330
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-14 Score=95.07 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=64.1
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 6 SRTLYVGNLP-------GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 6 ~~~l~v~nl~-------~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
...|-|.-.. ..+++++|+++|++||+|..|.|. +.++|||||+|.+.++|+.|+..+++ +.|+.|.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEE
Confidence 4566666544 458999999999999999999997 46799999999999999999997555 679999999
Q ss_pred eccCCCC
Q 026659 79 LAHGGRR 85 (235)
Q Consensus 79 ~~~~~~~ 85 (235)
|+.+...
T Consensus 86 ~a~~~~~ 92 (100)
T 2d9o_A 86 WLEGQPQ 92 (100)
T ss_dssp CSSCCCC
T ss_pred EccCCCC
Confidence 9886543
No 331
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=2.9e-15 Score=104.31 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=70.6
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC---ceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCcc
Q 026659 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 103 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~ 176 (235)
+++....++|||+|||+.+++++|.++|.+||. |..+.+..+.. +|||||+|.+.++|.+|+. |||..+.|
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g-- 114 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH-- 114 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC--
Confidence 344566789999999999999999999999999 88999998754 4699999999999999998 99999999
Q ss_pred ceeEEEEeecC
Q 026659 177 SRSYVRVREYD 187 (235)
Q Consensus 177 ~~~~i~v~~~~ 187 (235)
++|+|..+.
T Consensus 115 --r~i~V~~a~ 123 (136)
T 2hgl_A 115 --RYIEVFKSH 123 (136)
T ss_dssp --SEEEEEECC
T ss_pred --EEEEEEECC
Confidence 788887654
No 332
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-14 Score=96.34 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=68.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~ 180 (235)
...+.++|||+|||..+++++|.++|..|+ .+.++.+.. .+||||+|.+.++|.+|+..|||..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 345678999999999999999999999774 556666543 3699999999999999999999999999 78
Q ss_pred EEEeecCCCCCc
Q 026659 181 VRVREYDSRRSY 192 (235)
Q Consensus 181 i~v~~~~~~~sr 192 (235)
|+|..++.+..+
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2fc8_A 84 VTLDWAKPKGEG 95 (102)
T ss_dssp CEEEECCCCCSS
T ss_pred EEEEEecCCCCC
Confidence 888888765543
No 333
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.7e-15 Score=98.45 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=69.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEE-ecC----CccEEEEEEcCHHHHHHHHHHhc--CCeecCccce
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDR----GGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSR 178 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~~~~~-~~~----~~~~~fV~f~~~~~A~~a~~~l~--g~~~~g~~~~ 178 (235)
.+.++|||+|||..+++++|.++|.+||. |..+.+. .+. .+|||||+|.+.++|..|+..|| +..+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g---- 81 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG---- 81 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT----
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC----
Confidence 45679999999999999999999999998 9999887 443 45799999999999999999996 589999
Q ss_pred eEEEEeecCCCC
Q 026659 179 SYVRVREYDSRR 190 (235)
Q Consensus 179 ~~i~v~~~~~~~ 190 (235)
+.|+|..+.+..
T Consensus 82 ~~l~V~~a~~~~ 93 (109)
T 2dis_A 82 HQIAVDWAEPEI 93 (109)
T ss_dssp BCCEEEESCSSC
T ss_pred CeEEEEEcCCCC
Confidence 678888776554
No 334
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=3.1e-15 Score=96.63 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=67.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecC
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (235)
..++|||+|||..+++++|.++|.+| .|..+.+. ..+|||||+|.+.++|.+|+..|||..+.| +.|+|..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcC
Confidence 45789999999999999999999999 99999885 566799999999999999999999999999 788888775
Q ss_pred CC
Q 026659 188 SR 189 (235)
Q Consensus 188 ~~ 189 (235)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 335
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=2.8e-16 Score=109.75 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=66.2
Q ss_pred CeEEEEecCHHHHHHHHHhcCCCccCCceEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 026659 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (235)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 125 (235)
++||.+|..++.+..+...+... +.|...--. ..............+|||+|||+.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~------------------~g~~~~~~~~~~~~~lfV~nLp~~~te~d 62 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRG------------------SGDSEFTVQSTTGHCVHMRGLPYKATEND 62 (139)
T ss_dssp --------------------------------------------------------------CCCCEECCSCCTTCCHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCC------------------CCCcccCCCCCCCCEEEEeCCCCCCCHHH
Confidence 57888888887777766644332 122111000 00001122334567999999999999999
Q ss_pred HHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 126 LKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 126 l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
|.++|.+|| ++.+.++.+.. +|||||+|.+.++|.+|| .+|+..+.| ++|.|.......
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g----R~i~V~~a~~~~ 124 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH----RYIELFLNSTTG 124 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS----CCCCCEECCCSC
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC----EEEEEEECCCCC
Confidence 999999999 67899887754 469999999999999999 899999999 566666554433
No 336
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=3.3e-16 Score=104.24 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=60.0
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 026659 11 VGNLPGDTRMREVEDLF------------YKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (235)
Q Consensus 11 v~nl~~~~t~~~l~~~F------------~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (235)
+.|||+.+++++|.+.| ++||+|..|.+.. ++.++|||||+|.++++|.+|+..|||..+.|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566666777776666 9999999999964 357899999999999999999999999999999999
Q ss_pred EEec
Q 026659 77 VELA 80 (235)
Q Consensus 77 v~~~ 80 (235)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 337
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=3.8e-15 Score=98.57 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=66.9
Q ss_pred CCceEEEeCCCC------CCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 108 SDYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 108 ~~~~l~v~nl~~------~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
.+++|||+|||. .+++++|.++|.+||.|..+.++.+.. +|||||+|.+.++|.+|+..|||..+.|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~-- 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK-- 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS--
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC--
Confidence 357899999999 999999999999999999999998865 47999999999999999999999999982
Q ss_pred eeEEEEeec
Q 026659 178 RSYVRVREY 186 (235)
Q Consensus 178 ~~~i~v~~~ 186 (235)
+.|+|..+
T Consensus 83 -r~l~V~~a 90 (100)
T 3ns6_A 83 -HRLFLYTM 90 (100)
T ss_dssp -CBCEEEES
T ss_pred -eEEEEEEC
Confidence 35555544
No 338
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=1.8e-15 Score=94.74 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=61.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|.+|++ +||..+.| +.|+|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g----~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN----KMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS----CCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC----EEEEEE
Confidence 489999999999999999999999999999987753 4799999999999999997 99999999 555554
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=5.3e-15 Score=95.30 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=63.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhc----C-------CceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
...++|||+|||..+++++|.++|.+| | .|..+.+..+ +|||||+|.+.++|..|+ .|||..+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g- 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG- 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECC-
Confidence 356799999999999999999999999 8 8988888765 569999999999999999 999999999
Q ss_pred cceeEEEEe
Q 026659 176 FSRSYVRVR 184 (235)
Q Consensus 176 ~~~~~i~v~ 184 (235)
+.|+|.
T Consensus 80 ---~~l~V~ 85 (87)
T 2hzc_A 80 ---QSLKIR 85 (87)
T ss_dssp ---EECEEE
T ss_pred ---eEEEEe
Confidence 566664
No 340
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=7.8e-15 Score=100.35 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
....++|||+|+ .+++++|.++|.+||.|..+.+. ..+|||||+|.+.++|..|+..|||..+.| ..|+|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS----CBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 356789999996 69999999999999999999886 556799999999999999999999999999 6788888
Q ss_pred cCCCCC
Q 026659 186 YDSRRS 191 (235)
Q Consensus 186 ~~~~~s 191 (235)
+.....
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 766543
No 341
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5e-15 Score=100.41 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=69.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCc-eEEEEEecC---CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v-~~~~~~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
..+.++|||+|||..+++++|.++|..||.| ..+.++.+. ..|||||+|.+.++|.+||.. |+..+.| +.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG----REA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT----EEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC----eEE
Confidence 3456899999999999999999999999999 889998775 347999999999999999977 9999999 788
Q ss_pred EEeecCCC
Q 026659 182 RVREYDSR 189 (235)
Q Consensus 182 ~v~~~~~~ 189 (235)
.|......
T Consensus 87 ~v~~a~~~ 94 (114)
T 2cpy_A 87 FVHVVTLE 94 (114)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 88776544
No 342
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=94.76 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=63.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
++|||+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.++|..|+..++ ..+.| +.|+|..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g----~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS----KTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS----CCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC----EEEEEEe
Confidence 3799999999999999999999999999999988754 4799999999999999999999 99999 4555543
No 343
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=9.9e-15 Score=93.06 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=62.8
Q ss_pred CceEEEeCCCCCCCHHH----HHHHHHhcC-CceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 109 DYRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
.+.|||.|||..+++++ |.++|.+|| .|..+ ..|+|||+|.+.++|..|++.|||..+.| +.|++
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFG----NRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCC----ceEEE
Confidence 33499999999999887 668999995 99888 23899999999999999999999999999 78888
Q ss_pred eecCCCC
Q 026659 184 REYDSRR 190 (235)
Q Consensus 184 ~~~~~~~ 190 (235)
..+...+
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 8876655
No 344
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.58 E-value=3e-15 Score=101.54 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCC--C---CCHHHHHHHHhhcCCeeEEEEecC-------CCCCCeEEEEecCHHHHHHHHHhcCCCccC
Q 026659 4 RSSRTLYVGNLPG--D---TRMREVEDLFYKYGPIVDIDLKIP-------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (235)
Q Consensus 4 ~~~~~l~v~nl~~--~---~t~~~l~~~F~~~G~i~~i~~~~~-------~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (235)
.|+++|++.|+-. + --+++|++.|++||+|.+|.|..+ +.++|+|||+|.++++|.+|+..|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4789999999942 1 236889999999999999999542 345699999999999999999999999999
Q ss_pred CceEEEEeccC
Q 026659 72 GYRLRVELAHG 82 (235)
Q Consensus 72 g~~i~v~~~~~ 82 (235)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999763
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=94.14 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=60.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ .+|||||+|.+.++|. +++|..+.+. ...+.+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~--g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIK--GISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEET--TEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccC--CEEEEEE
Confidence 3456689999999999999999999999999999999886 6789999999999988 3667665421 1677777
Q ss_pred ecCCC
Q 026659 185 EYDSR 189 (235)
Q Consensus 185 ~~~~~ 189 (235)
.+.++
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 76544
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=102.13 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=68.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEE--------EEE-ecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS--------QVF-RDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~--------~~~-~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
.+.++|||+|||..+++++|.++|.+||.|..+ .+. .....|||||+|.+.++|..|+..|||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 455799999999999999999999999998763 333 34566899999999999999999999999999
Q ss_pred eeEEEEeecCCCCC
Q 026659 178 RSYVRVREYDSRRS 191 (235)
Q Consensus 178 ~~~i~v~~~~~~~s 191 (235)
+.|+|..++....
T Consensus 120 -~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 -KPMVVQFARSARP 132 (143)
T ss_dssp -EECEEEECCCSCC
T ss_pred -cEEEEEECCCCCC
Confidence 7888888765443
No 347
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=96.15 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=66.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEe----cCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR----DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~----~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
...++|||+|||..+++++|.++|.+||.|.. .++. ....|||||+|.+.++|.+|++ |||..+.| +.|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEEE
Confidence 45689999999999999999999999998776 3332 3456799999999999999998 99999999 6888
Q ss_pred EeecCCCC
Q 026659 183 VREYDSRR 190 (235)
Q Consensus 183 v~~~~~~~ 190 (235)
|..+..+.
T Consensus 89 V~~a~~~~ 96 (101)
T 1fj7_A 89 LEKPKGRD 96 (101)
T ss_dssp EECCSCCC
T ss_pred EEEcCCCC
Confidence 88776544
No 348
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=1.4e-15 Score=98.66 Aligned_cols=74 Identities=27% Similarity=0.351 Sum_probs=64.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEee
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (235)
++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.+ |.+|+..|||..+.| +.|+|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g----~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG----RTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS----SSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC----eEEEEEE
Confidence 4799999999999999999999999999999987753 579999999999 999999999999999 5666665
Q ss_pred cCC
Q 026659 186 YDS 188 (235)
Q Consensus 186 ~~~ 188 (235)
+..
T Consensus 77 a~~ 79 (90)
T 2ki2_A 77 ANP 79 (90)
T ss_dssp C--
T ss_pred cCC
Confidence 544
No 349
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=6.4e-15 Score=114.43 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcCC-CccC---CceEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFD---GYRLRV 77 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~---g~~i~v 77 (235)
.+.++|||+|||+.+|+++|.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+ ..+. |++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999853 577899999999999999999999955 4444 999999
Q ss_pred EeccCCC
Q 026659 78 ELAHGGR 84 (235)
Q Consensus 78 ~~~~~~~ 84 (235)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9998653
No 350
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=2e-14 Score=104.94 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=69.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
.....++|||+|||..+++++|.++|.+||.|..+.+..+. ..|||||+|.+.++|.+|+..|||..+.| ..|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G----r~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS----SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC----EEE
Confidence 44567899999999999999999999999999999998865 34799999999999999999999999999 566
Q ss_pred EEeecC
Q 026659 182 RVREYD 187 (235)
Q Consensus 182 ~v~~~~ 187 (235)
+|..+.
T Consensus 160 ~V~~a~ 165 (177)
T 2f3j_A 160 DIQLVA 165 (177)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 666543
No 351
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=3.7e-15 Score=99.91 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=67.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCC---ceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccce
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~ 178 (235)
.....++|||+|||+.+++++|.++|..||. |..+.+..+.. +|||||+|.+.++|.+|+. +||..+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g---- 81 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ---- 81 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS----
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC----
Confidence 3456789999999999999999999999888 89999987754 4699999999999999998 99999999
Q ss_pred eEEEEeecC
Q 026659 179 SYVRVREYD 187 (235)
Q Consensus 179 ~~i~v~~~~ 187 (235)
+.|+|....
T Consensus 82 r~i~V~~a~ 90 (107)
T 2lmi_A 82 RYVEVYEIN 90 (107)
T ss_dssp SCCCCEECC
T ss_pred eEEEEEECC
Confidence 566666554
No 352
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.8e-15 Score=101.01 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=65.8
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEec-C---CccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-R---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~-~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
.+....++|||+|||..+++++|.++|..||.|..+.++.+ . ..|||||+|.+.++|.+||. |||..+.| +
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g----r 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN----R 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT----S
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC----c
Confidence 34456689999999999999999999999999987444433 2 24699999999999999999 99999999 5
Q ss_pred EEEEeecC
Q 026659 180 YVRVREYD 187 (235)
Q Consensus 180 ~i~v~~~~ 187 (235)
.|+|..+.
T Consensus 95 ~i~V~~a~ 102 (124)
T 1wel_A 95 FIQVHPIT 102 (124)
T ss_dssp CBEEEEEC
T ss_pred EEEEEECC
Confidence 67776554
No 353
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.56 E-value=2.4e-14 Score=96.42 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCc
Q 026659 4 RSSRTLYVGNLPGDT----------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~----------t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (235)
-+++.|.+.|+=... -+++|++.|++||.|.+|.+..+ .++|+|||+|.+.++|.+|+..|||.+|.|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 368889999884322 23468999999999999998654 3589999999999999999999999999999
Q ss_pred eEEEEecc
Q 026659 74 RLRVELAH 81 (235)
Q Consensus 74 ~i~v~~~~ 81 (235)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999986
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=93.81 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=62.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCee--cCccceeEEEEee
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF--RNAFSRSYVRVRE 185 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~--~g~~~~~~i~v~~ 185 (235)
..++|||+|||..+++++|.++|.+||.|..+.+..+ .+|||||+|.+.++|++ +++..+ .| ..|++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeCC----EEEEEEe
Confidence 4579999999999999999999999999999999876 56799999999999975 455544 55 6788877
Q ss_pred cCCCCCc
Q 026659 186 YDSRRSY 192 (235)
Q Consensus 186 ~~~~~sr 192 (235)
..++...
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 7655443
No 355
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=2.1e-14 Score=109.06 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=67.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcC--CceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i 181 (235)
..++|||+||+..+++++|+++|.+|| .|..|.++.+.. +|||||+|.+.++|.+||..|||..|.| +.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G----r~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT----BCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC----EEe
Confidence 456899999999999999999999999 999999998853 3699999999999999999999999999 677
Q ss_pred EEeecC
Q 026659 182 RVREYD 187 (235)
Q Consensus 182 ~v~~~~ 187 (235)
+|..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776543
No 356
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=98.41 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=65.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCc----eEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v----~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
....+|||+|||+.+++++|+++|.+||.| ..+.++.+.. +|||||+|.+.++|.+|+.. |+..+.| +
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g----R 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK----R 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS----C
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC----e
Confidence 456799999999999999999999999975 6888887743 46999999999999999986 9999998 6
Q ss_pred EEEEeecC
Q 026659 180 YVRVREYD 187 (235)
Q Consensus 180 ~i~v~~~~ 187 (235)
+|.|....
T Consensus 96 ~i~V~~a~ 103 (123)
T 2dha_A 96 YIELFRST 103 (123)
T ss_dssp EECCEEEC
T ss_pred EEEEEECC
Confidence 77776553
No 357
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.6e-16 Score=105.17 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
.+.++|||+|||..+++++|.++|.+||.|.. +.+..+.. .|||||+|.+.++|.+|+..|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34578999999999999999999999999998 77877643 4699999999999999999999999999
Q ss_pred ccceeEEEEeecCCCCCc
Q 026659 175 AFSRSYVRVREYDSRRSY 192 (235)
Q Consensus 175 ~~~~~~i~v~~~~~~~sr 192 (235)
+.|+|..+..+..+
T Consensus 85 ----~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 ----NPIKVSFATRRADF 98 (116)
Confidence 68888877665543
No 358
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.53 E-value=7.3e-15 Score=91.90 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=58.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----ccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+. +++..+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~ 68 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLS 68 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCE
Confidence 589999999999999999999999999999987643 5799999999999999997 488999994
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.1e-13 Score=91.20 Aligned_cols=82 Identities=16% Similarity=0.284 Sum_probs=68.2
Q ss_pred CCCCceEEEeCCCCCCC-----------HHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 106 RRSDYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
..+..+|+|.||..... +++|.++|.+||.|..+.+......|+|||+|.+.++|.+|+..|||..+.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34567999999954432 5899999999999999976444457899999999999999999999999999
Q ss_pred ccceeEEEEeecCCCCC
Q 026659 175 AFSRSYVRVREYDSRRS 191 (235)
Q Consensus 175 ~~~~~~i~v~~~~~~~s 191 (235)
+.|++....+...
T Consensus 92 ----r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 ----RQITAQAWDGTTD 104 (112)
T ss_dssp ----EECEEEECCSCCC
T ss_pred ----cEEEEEEeCCCCC
Confidence 7888888766543
No 360
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=2.4e-14 Score=98.10 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCce--EEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~--~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
......+|||+|||+.+++++|.++|.+| .|+ .|.+..+.. +|||||+|.+.++|.+|+. +++..+.| +
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g----R 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGH----R 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT----B
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC----E
Confidence 34556789999999999999999999999 677 788887654 4799999999999999997 47899999 4
Q ss_pred EEEEeec
Q 026659 180 YVRVREY 186 (235)
Q Consensus 180 ~i~v~~~ 186 (235)
+|+|...
T Consensus 112 ~I~V~~a 118 (126)
T 2hgm_A 112 YIEVFKS 118 (126)
T ss_dssp CCCCEEE
T ss_pred EEEEEEC
Confidence 5555443
No 361
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=3.7e-14 Score=94.18 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=65.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
...++|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+. ++..+.| ..|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g----~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG----KKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC----EEEEE
Confidence 4557999999999999999999999999999999998763 3699999999999999998 8888888 55555
Q ss_pred eecC
Q 026659 184 REYD 187 (235)
Q Consensus 184 ~~~~ 187 (235)
....
T Consensus 81 ~~a~ 84 (102)
T 2xs2_A 81 GPAI 84 (102)
T ss_dssp EEEE
T ss_pred EECC
Confidence 5443
No 362
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=3e-13 Score=89.89 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCceEEEeCCCC-----CCCHHHHHHHHHhcCCceEEEEEecC-----CccEEEEEEcCHHHHHHHHHHhcCCeecCcc
Q 026659 107 RSDYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 107 ~~~~~l~v~nl~~-----~~t~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~ 176 (235)
.+..+|+|.|+.. ..++++|.++|++||.|..+.+..++ ..|+|||+|.+.++|.+|+..|||..+.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G-- 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG-- 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC--
Confidence 3456899999963 23689999999999999999999863 35899999999999999999999999999
Q ss_pred ceeEEEEeecCC
Q 026659 177 SRSYVRVREYDS 188 (235)
Q Consensus 177 ~~~~i~v~~~~~ 188 (235)
+.|.+.....
T Consensus 84 --r~i~v~~a~~ 93 (105)
T 2pe8_A 84 --RVVKACFYNL 93 (105)
T ss_dssp --EECEEEECCH
T ss_pred --cEEEEEEcCH
Confidence 7777776643
No 363
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=92.65 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=53.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEec-------CCccEEEEEEcCHHHHHHHHHHh
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-------RGGMTGIVDYTSYDDMKYAIRKL 167 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~-------~~~~~~fV~f~~~~~A~~a~~~l 167 (235)
...++|||+|||..+++++|.++|.+||.|. +.++.+ ..+|||||+|.+.++|.+|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4457899999999999999999999999999 777654 33579999999999999999998
No 364
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.7e-13 Score=92.40 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=66.3
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHHhcCCceEEEEEecCCc----cEEEEEEcC----HHH----HHHHHH--HhcCCe
Q 026659 110 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS----YDD----MKYAIR--KLDRSE 171 (235)
Q Consensus 110 ~~l~v~nl----~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~----~~~----A~~a~~--~l~g~~ 171 (235)
..|||+|| |+.+++++|.++|..||+|..+.+..|+.+ |||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999999999876 599999996 433 788988 789999
Q ss_pred ecCccceeEEEEeecCCC
Q 026659 172 FRNAFSRSYVRVREYDSR 189 (235)
Q Consensus 172 ~~g~~~~~~i~v~~~~~~ 189 (235)
+.| +.|+|..++..
T Consensus 83 I~G----r~irV~ln~~g 96 (136)
T 2j8a_A 83 IMG----FKFEVILNKHS 96 (136)
T ss_dssp ETT----EEEEEEECCTT
T ss_pred ecC----cEEEEEECccc
Confidence 999 88888876543
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=2.2e-13 Score=103.13 Aligned_cols=80 Identities=13% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCCCCceEEEeCCCCCC---------CHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCee---
Q 026659 105 SRRSDYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF--- 172 (235)
Q Consensus 105 ~~~~~~~l~v~nl~~~~---------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~--- 172 (235)
......+|||+||+..+ ++++|.++|.+||.|..+.++.+ +|||||+|.+.++|+.|++.|+|..+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 34567899999999998 79999999999999999999864 56999999999999999999999999
Q ss_pred ---------cCccceeEEEEeecCCCC
Q 026659 173 ---------RNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 173 ---------~g~~~~~~i~v~~~~~~~ 190 (235)
.| ..|.|..+...+
T Consensus 208 ~~~e~~~~~~g----r~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREG----TGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGS----CCCEEEECC---
T ss_pred ccccccccCCC----CEEEEEEccCCC
Confidence 56 677777765443
No 366
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=5e-12 Score=93.45 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=64.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEe
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~ 184 (235)
..++|||+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.++|..|+..++ ..+.| +.|.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G----r~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE----TDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT----EECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC----EEEEEE
Confidence 347899999999999999999999999999999998654 4799999999999999997665 58999 677776
Q ss_pred ecC
Q 026659 185 EYD 187 (235)
Q Consensus 185 ~~~ 187 (235)
...
T Consensus 183 ~~~ 185 (193)
T 2voo_A 183 FKD 185 (193)
T ss_dssp ETT
T ss_pred EhH
Confidence 543
No 367
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-12 Score=87.76 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecC-HHHHHHHHHhcC--CCccCCceEEEEe
Q 026659 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED-YRDAEDAIRGRD--GYNFDGYRLRVEL 79 (235)
Q Consensus 4 ~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--g~~~~g~~i~v~~ 79 (235)
.+++.|||+||++. ++.++|+++|++||+|..|.+..+ ...|||.|.+ +++|..|+..|| +..|.|..+.+++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46899999999999 999999999999999999999764 3479999999 899999999995 6788999999887
Q ss_pred cc
Q 026659 80 AH 81 (235)
Q Consensus 80 ~~ 81 (235)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=2.2e-12 Score=85.70 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=63.0
Q ss_pred CCceEEEeCCC--CCC--------CHHHHHHHHHhcCCceEEEEEecC------CccEEEEEEcCHHHHHHHHHHhcCCe
Q 026659 108 SDYRVLVTGLP--SSA--------SWQDLKDHMRRAGDVCFSQVFRDR------GGMTGIVDYTSYDDMKYAIRKLDRSE 171 (235)
Q Consensus 108 ~~~~l~v~nl~--~~~--------t~~~l~~~f~~~g~v~~~~~~~~~------~~~~~fV~f~~~~~A~~a~~~l~g~~ 171 (235)
++..|.|.|+- ..+ .+++|.++|++||.|..+.+..+. ..|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 35688999973 233 247899999999999999998764 35899999999999999999999999
Q ss_pred ecCccceeEEEEeecC
Q 026659 172 FRNAFSRSYVRVREYD 187 (235)
Q Consensus 172 ~~g~~~~~~i~v~~~~ 187 (235)
+.| +.|++....
T Consensus 84 f~G----R~i~v~~~~ 95 (105)
T 3v4m_A 84 FAN----RVVVTKYCD 95 (105)
T ss_dssp ETT----EECEEEEEC
T ss_pred eCC----CEEEEEEeC
Confidence 999 677776543
No 369
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.9e-12 Score=80.93 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce
Q 026659 3 SRSSRTLYVGNLP----GDTRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (235)
Q Consensus 3 ~~~~~~l~v~nl~----~~~t~----~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (235)
+.|.-||+|.-.+ .+.-+ .+|.+.|++||+|..+++.. +.+||+|.+.++|.+|+. |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 3467888888776 23444 66899999999999999984 449999999999999999 9999999999
Q ss_pred EEEEeccC
Q 026659 75 LRVELAHG 82 (235)
Q Consensus 75 i~v~~~~~ 82 (235)
|+|.++.+
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999875
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=3.7e-12 Score=85.65 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=64.5
Q ss_pred CCCceEEEeCCCCCC----------CHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCcc
Q 026659 107 RSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~----------t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~ 176 (235)
.++..|.+.|+-... .+++|.+.|++||.|..+.+..+...|+|||+|.+.++|.+|+..|||..+.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G-- 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG-- 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT--
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 345678898873322 25689999999999999999888778999999999999999999999999999
Q ss_pred ceeEEEEeecC
Q 026659 177 SRSYVRVREYD 187 (235)
Q Consensus 177 ~~~~i~v~~~~ 187 (235)
+.|.+....
T Consensus 83 --R~i~v~~~~ 91 (114)
T 3s6e_A 83 --KMITAAYVP 91 (114)
T ss_dssp --EECEEEEEC
T ss_pred --EEEEEEEEc
Confidence 677776653
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=5.7e-12 Score=85.34 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=63.6
Q ss_pred CCceEEEeCCCCC--C---CHHHHHHHHHhcCCceEEEEEecCC--------ccEEEEEEcCHHHHHHHHHHhcCCeecC
Q 026659 108 SDYRVLVTGLPSS--A---SWQDLKDHMRRAGDVCFSQVFRDRG--------GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (235)
Q Consensus 108 ~~~~l~v~nl~~~--~---t~~~l~~~f~~~g~v~~~~~~~~~~--------~~~~fV~f~~~~~A~~a~~~l~g~~~~g 174 (235)
++.+|+|.|+-.. + .+++|.+.|.+||.|..+.+..+.. .|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4568999998432 2 3689999999999999999998743 2799999999999999999999999999
Q ss_pred ccceeEEEEeecC
Q 026659 175 AFSRSYVRVREYD 187 (235)
Q Consensus 175 ~~~~~~i~v~~~~ 187 (235)
+.|.+....
T Consensus 99 ----R~i~v~~~~ 107 (118)
T 3ue2_A 99 ----RKVVAEVYD 107 (118)
T ss_dssp ----EECEEEEEC
T ss_pred ----cEEEEEEcC
Confidence 677766543
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=2.4e-12 Score=102.57 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=58.8
Q ss_pred CCCCceEEEeC--CCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeec
Q 026659 106 RRSDYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (235)
Q Consensus 106 ~~~~~~l~v~n--l~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~ 173 (235)
..+..+|||+| |+..+++++|.++|.+||+|..+.+.. .+|||||+|.+.++|++|++.|||+.+-
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45667999999 578999999999999999998876654 5689999999999999999999999984
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=1.6e-12 Score=86.27 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=56.2
Q ss_pred EeCCCCCCCHHHHHHHH------------HhcCCceEEEEEecC---CccEEEEEEcCHHHHHHHHHHhcCCeecCccce
Q 026659 114 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (235)
Q Consensus 114 v~nl~~~~t~~~l~~~f------------~~~g~v~~~~~~~~~---~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~ 178 (235)
+.||+..+++++|+++| ++||.|..+.+..+. ..|+|||+|.+.++|.+|+..|||..+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G---- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG---- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT----
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC----
Confidence 45666777777776666 999999999999875 36899999999999999999999999999
Q ss_pred eEEEEee
Q 026659 179 SYVRVRE 185 (235)
Q Consensus 179 ~~i~v~~ 185 (235)
+.|++..
T Consensus 96 r~i~v~~ 102 (104)
T 1jmt_A 96 QPIHAEL 102 (104)
T ss_dssp EECCEEE
T ss_pred EEEEEEE
Confidence 5665543
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=8.4e-11 Score=77.10 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeecCCCC
Q 026659 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (235)
Q Consensus 119 ~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (235)
..+++++|.++|.+||.|..+.+. ...+|||||+|.+.++|..|+..+++ +.| ..|+|...+..+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccCCC
Confidence 568999999999999999999988 35668999999999999999998555 455 567787766554
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=6.5e-11 Score=79.71 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=63.1
Q ss_pred CCCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcC-HHHHHHHHHHhc--CCeecCc
Q 026659 103 GVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS-YDDMKYAIRKLD--RSEFRNA 175 (235)
Q Consensus 103 ~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~-~~~A~~a~~~l~--g~~~~g~ 175 (235)
....+.++.|+|+||+.. ++.++|.++|.+||+|.+|.+..+.. .|||+|.+ .++|..|+.+|| +..+.|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 345577899999999999 99999999999999999999988877 79999999 899999999994 6677773
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=7.3e-11 Score=74.89 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce
Q 026659 4 RSSRTLYVGNLPGD-----TRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (235)
Q Consensus 4 ~~~~~l~v~nl~~~-----~t~----~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (235)
.|.-||+|.-++.. .-+ .+|.+.|.+||+|..+++..+ -+||+|.+.++|.+|+. |||..+.|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 57889999988743 223 558999999999999999854 39999999999999999 9999999999
Q ss_pred EEEEecc
Q 026659 75 LRVELAH 81 (235)
Q Consensus 75 i~v~~~~ 81 (235)
|+|.+..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999754
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=4e-10 Score=71.19 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCceEEEeCCCC----CCCH----HHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCcccee
Q 026659 108 SDYRVLVTGLPS----SASW----QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (235)
Q Consensus 108 ~~~~l~v~nl~~----~~t~----~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~ 179 (235)
++.+|+|.-.+. ++-. .+|.+.|.+||+|..+++..+. +||+|.+.++|.+|+. |||..+.| +
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~G----r 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLN----R 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETT----E
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCC----e
Confidence 455777776652 3333 6799999999999999999884 8999999999999998 99999999 7
Q ss_pred EEEEeecCCCC
Q 026659 180 YVRVREYDSRR 190 (235)
Q Consensus 180 ~i~v~~~~~~~ 190 (235)
.|+|....+..
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 88887776543
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.06 E-value=3.6e-10 Score=85.45 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=57.6
Q ss_pred CCHHHHHHHHhhcCCeeEEEEec-------CCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 18 TRMREVEDLFYKYGPIVDIDLKI-------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 18 ~t~~~l~~~F~~~G~i~~i~~~~-------~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
-.+++|.+.|++||.|..+.+.. ++.++|++||+|.+.++|.+|+..|||..+.|+.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45678999999999999999942 23778999999999999999999999999999999999975
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.3e-09 Score=69.10 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=59.2
Q ss_pred CCCceEEEeCCCCC-----CCH----HHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 107 RSDYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 107 ~~~~~l~v~nl~~~-----~t~----~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
+++.+|+|.-++.. +-. .+|.+.|.+||+|..+++..+ .+||+|.+.++|.+||. |||..+.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~G--- 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKG--- 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETT---
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCC---
Confidence 34568888877632 322 568999999999999999988 49999999999999998 99999999
Q ss_pred eeEEEEeec
Q 026659 178 RSYVRVREY 186 (235)
Q Consensus 178 ~~~i~v~~~ 186 (235)
+.|+|...
T Consensus 85 -r~L~V~~k 92 (95)
T 1ufw_A 85 -RAVKISGP 92 (95)
T ss_dssp -EEEEEECC
T ss_pred -eEEEEecc
Confidence 77777654
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=8.9e-09 Score=66.62 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKY-----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~-----G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..++|-+-|||..+++..|+.+.+.+ |.|..|.+..+ -+-|+|+|.+...|.+|.-.|+|..|.|+.|.|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 37899999999999999999999999 99999999765 45699999999999999988999999999999874
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=7.1e-07 Score=57.31 Aligned_cols=89 Identities=22% Similarity=0.278 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh----c-CCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYK----Y-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~----~-G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
.-.++|.|.|||+.+.++.|.-+|++ - |+|..+.... +-|+|+|.+.+.|+..++ -....|.|..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 35789999999999999999999987 2 5999998863 779999999999999998 33678888999998
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCC
Q 026659 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSAS 122 (235)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t 122 (235)
+..+. ..++|++.+|++.++
T Consensus 80 P~~~~------------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPPR------------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp ECCCC------------------------CCCCCCCCSCCCCCC
T ss_pred cCCCC------------------------CcceEeeecCCCCCC
Confidence 75432 234677888877664
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.62 E-value=8.8e-08 Score=72.21 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHhcCCceEEEEEecCC--------ccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEEeec
Q 026659 121 ASWQDLKDHMRRAGDVCFSQVFRDRG--------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (235)
Q Consensus 121 ~t~~~l~~~f~~~g~v~~~~~~~~~~--------~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (235)
..+++|.+.|.+||.|..+.+..+.. .|++||+|.+.++|.+|+..|||+.+.| +.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g----r~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG----RKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC----eEEEEEEc
Confidence 35688999999999999999985532 3799999999999999999999999999 56666544
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=5.5e-07 Score=58.33 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=64.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhc-----CCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEE
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~ 182 (235)
...+|-+-|||..++...|+.+..++ |.++.+.+..|.. -|+|+|.+...|.+|.-+|+|.+|.| +.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~g----r~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQG----KVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETT----EEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecC----eEEE
Confidence 45689999999999999999999999 9999998888876 69999999999999999999999999 7777
Q ss_pred Ee
Q 026659 183 VR 184 (235)
Q Consensus 183 v~ 184 (235)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=1.8e-06 Score=55.75 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCC-CH----HHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 026659 4 RSSRTLYVGNLPGDT-RM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~-t~----~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (235)
.=.++|+|.||+.++ +. +.++++|..|+++........ =.-..|.|.++++|.+|...||+..+.|..|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 346789999998865 32 567999999998888777532 3457899999999999999999999999999999
Q ss_pred eccCC
Q 026659 79 LAHGG 83 (235)
Q Consensus 79 ~~~~~ 83 (235)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99843
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.09 E-value=3.4e-05 Score=48.93 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=54.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC-----CCCCeEEEEecCHHHHHHHHHhcCCCccC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP-----RPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~-----~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (235)
++|.|.+||+.+|++++.+.+.....+......... ..-.-|||.|.+.+++......++|..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 578999999999999999999998877666553321 22356999999999999999999998873
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=3.3e-05 Score=51.27 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCC-ceEEEEecc
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-YRLRVELAH 81 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~i~v~~~~ 81 (235)
..+-|.|-+.|+. ..+.|...|++||.|.+.... ....+..|.|.+..+|++||. .||..+.| -.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 3577889999988 477889999999999998772 236899999999999999999 89999975 667888764
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.93 E-value=4e-05 Score=48.59 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=44.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (235)
..++| ++|+.....||.++|+.||.|.--++.. .-|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999665555553 469999999999999998663
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=6.2e-05 Score=48.57 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=59.2
Q ss_pred CceEEEeCCCCCC-C----HHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCccceeEEEE
Q 026659 109 DYRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (235)
Q Consensus 109 ~~~l~v~nl~~~~-t----~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~~~~i~v 183 (235)
.++|+|.||+..+ . .+.++++|..|+++......+.-. -..|.|.++++|.+|-..||+..+.|+ .+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~----~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK----EMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE----ECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc----eeEE
Confidence 3589999998766 2 367899999999998877776544 578999999999999999999999994 5555
Q ss_pred eecC
Q 026659 184 REYD 187 (235)
Q Consensus 184 ~~~~ 187 (235)
-...
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 4443
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=0.0002 Score=47.56 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=54.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcCCeecCc
Q 026659 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (235)
Q Consensus 106 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g~~~~g~ 175 (235)
......|.|-+.|... ...+..+|.+||+|..... ..+..+..|+|.+..+|++||. .||..++|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 3456789999998874 6778889999999988776 3445599999999999999994 699999864
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.73 E-value=5.4e-05 Score=48.18 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=43.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcC
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (235)
.++| ++|+.....||.++|+.||.|.--++. -.-|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999944444444 2469999999999999999764
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.70 E-value=9.2e-05 Score=49.81 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=57.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-Eec---------------CC-CCCCeEEEEecCHHHHHHHHHhcC
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKI---------------PP-RPPGYAFLEFEDYRDAEDAIRGRD 66 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~-~~~---------------~~-~~~g~afV~f~~~~~a~~a~~~l~ 66 (235)
..+.-|.|-+.|+. ....+.+.|++||.|.+-. +.. .. ....+..|+|.++.+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 34667888888765 5677889999999987721 111 00 125678999999999999999 99
Q ss_pred CCccCCceEEEEecc
Q 026659 67 GYNFDGYRLRVELAH 81 (235)
Q Consensus 67 g~~~~g~~i~v~~~~ 81 (235)
|..|.|..|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988998875
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.66 E-value=0.00049 Score=43.65 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=45.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhc
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~ 168 (235)
..++| +.|..+...||.++|..||.|. |..+.|. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999543 5566665 79999999999999998764
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.58 E-value=0.00063 Score=43.05 Aligned_cols=67 Identities=13% Similarity=0.325 Sum_probs=56.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCc------cEEEEEEcCHHHHHHHHHHhcCCeecCcc
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~------~~~fV~f~~~~~A~~a~~~l~g~~~~g~~ 176 (235)
.+|.|.+||+.+|++++.+.+.....+........... .-|+|.|.+.+++..-.+.++|..+-+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 36899999999999999999999887776666544321 37999999999999999999999987643
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00074 Score=43.36 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=46.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhc-----CCceEEEEEecCCccEEEEEEcCHHHHHHHHHH
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~ 166 (235)
...+|.|.|||..+.++.|.-+|+.- |+|..+.... +.|+|+|.+.+.|++.+.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 45689999999999999999999862 4677776655 3899999999999999864
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.45 E-value=0.0004 Score=44.27 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=49.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-----CCCCCeEEEEecCHHHHHHHHHhcCCCccC
Q 026659 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (235)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (235)
.+-+|.|..||+.+|++++.+.++..=++....+... ...-.-|||.|.+.++.......++|..|-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3567999999999999998888776544432222211 112246999999999999999999998873
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00038 Score=44.30 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=44.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhc
Q 026659 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (235)
Q Consensus 111 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~ 168 (235)
.++| +.|..+...||.++|..|| -..|..+.|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 3555 9999999999999999999 3446666665 79999999999999998764
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.20 E-value=0.00022 Score=58.92 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=42.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
.++|||. .|..+++.+|.+.|++||+|.++.+..+. .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999999887543 3799999999999998876
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.18 E-value=0.0079 Score=40.46 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCceEE-EEE--------------ecC---CccEEEEEEcCHHHHHHHHHHhcC
Q 026659 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVF--------------RDR---GGMTGIVDYTSYDDMKYAIRKLDR 169 (235)
Q Consensus 108 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~-~~~--------------~~~---~~~~~fV~f~~~~~A~~a~~~l~g 169 (235)
....|.|-+.|+... ..+.+.|++||.|..- ... .-+ +.+...|+|.+..+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 345788888865554 5566789999998762 111 001 2348899999999999999 5899
Q ss_pred CeecCc
Q 026659 170 SEFRNA 175 (235)
Q Consensus 170 ~~~~g~ 175 (235)
..+.|.
T Consensus 84 ~ii~G~ 89 (132)
T 3p3d_A 84 AVFNGV 89 (132)
T ss_dssp CEETTE
T ss_pred eEeCcE
Confidence 999884
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.14 E-value=0.0077 Score=38.34 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=50.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCC------ccEEEEEEcCHHHHHHHHHHhcCCeecCccc
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~------~~~~fV~f~~~~~A~~a~~~l~g~~~~g~~~ 177 (235)
.+|.|..||+.+|++++.+.+...-++.......... -..|+|.|.+.++...-.+.++|..+-+...
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 4799999999999999888777654432222221111 1269999999999999999999999876443
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.06 E-value=0.0055 Score=50.68 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=41.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHH
Q 026659 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 165 (235)
Q Consensus 109 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~ 165 (235)
.+.|+|. .|..+++.+|.++|++||+|..+.+..+. +.||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 3579997 69999999999999999999998777643 3599999999999887754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.09 E-value=0.14 Score=43.15 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 67 (235)
..++|+ +|..+...+|.++|+.||.+.-.++- ...|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid-----dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS-----SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc-----CCeEEEEECCHHHHHHHHHHHHh
Confidence 456666 89999999999999999965443333 45699999999999999998853
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=89.60 E-value=2.1 Score=25.49 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=44.2
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhhcC-----CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEecc
Q 026659 8 TLYVGNL-PGDTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (235)
Q Consensus 8 ~l~v~nl-~~~~t~~~l~~~F~~~G-----~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (235)
++||..= -..+.+.+|..++..-+ .|-.|.+. -.|.||+-... .|..++..|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4666422 23478888888887654 45566665 46899988754 5777888899999999999988764
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.17 E-value=1.6 Score=36.72 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=44.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHhcC
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l~g 169 (235)
..++|+ +|..+...+|.++|+.||.+ .+..+.+. .|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 456665 89999999999999999954 44444443 799999999999999998853
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=81.59 E-value=7.1 Score=24.04 Aligned_cols=57 Identities=14% Similarity=0.334 Sum_probs=46.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHHh
Q 026659 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (235)
Q Consensus 107 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~l 167 (235)
..++-+.|-|+|..+-..++.-.....|---+|..... .|.|.|.+.++..-|+.+|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHH
Confidence 34578899999999988888777777776666666543 7999999999999999887
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=73.07 E-value=6.3 Score=27.74 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=39.3
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hhcCCeeEEEEecCCCCCCeEEEEecCH-HHHHHHHH
Q 026659 8 TLYVGNLPG-D--------TRMREVEDLF--YKYGPIVDIDLKIPPRPPGYAFLEFEDY-RDAEDAIR 63 (235)
Q Consensus 8 ~l~v~nl~~-~--------~t~~~l~~~F--~~~G~i~~i~~~~~~~~~g~afV~f~~~-~~a~~a~~ 63 (235)
.+.|-|+|. . ....+|.+.| ..|.++.-..+.......|+|.|+|... .--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 456778886 2 4457899977 9999888766655556689999999844 33444554
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=69.31 E-value=17 Score=22.35 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCceEEEEe
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (235)
..+|-|-|-|+|..+-..++.-.....|---.|... -|.|.|.|.+.++...|+..|-+. .+..|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 467889999999999888887777777855566665 478999999999999999766332 345666665
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=65.32 E-value=22 Score=22.04 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=25.9
Q ss_pred CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCC
Q 026659 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (235)
Q Consensus 32 ~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 67 (235)
+|..+.++. .-+||.||++...++...++....|
T Consensus 39 ~i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 466665542 3689999999999998888886665
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.68 E-value=25 Score=21.56 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=39.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
+-|+-.+...++..+|++.+++ || .|..|..........-|||.+....+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 3455567788999999999987 56 66666664433334459999998888776443
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=59.41 E-value=1.4 Score=30.39 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCCCeEEEEec
Q 026659 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFE 53 (235)
Q Consensus 21 ~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~ 53 (235)
+|+.++|...|.|+..... +||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 4566777777877766544 899999976
No 410
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=56.47 E-value=32 Score=21.05 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=38.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHH
Q 026659 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (235)
-|+-.++..++..+|++.++. || .|..|..........-|||.+....+|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 445567789999999999986 56 6777666444333445999998877765543
No 411
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=42.76 E-value=71 Score=21.83 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=37.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHH
Q 026659 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (235)
-|+--+...++..+|.+.++. || .|..|.........--|||.+....+|....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHH
Confidence 344456778999999998886 45 6666666443333445999998777766543
No 412
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=41.65 E-value=81 Score=21.72 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
.|+-.++..++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 345556788999999999986 56 67776664432234459999988777655443
No 413
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=41.48 E-value=77 Score=21.45 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=37.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHH
Q 026659 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (235)
-|+-.+...++..+|.+.++. || .|..|.........--|||.+....+|....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIA 136 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHH
Confidence 344456778999999998886 56 6666666443333445999998777766543
No 414
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.36 E-value=14 Score=21.35 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.8
Q ss_pred CCeEEEEecCHH
Q 026659 45 PGYAFLEFEDYR 56 (235)
Q Consensus 45 ~g~afV~f~~~~ 56 (235)
+..|||.|.|..
T Consensus 37 ~~~ClV~FeD~s 48 (68)
T 2e5p_A 37 REVCLVQFEDDS 48 (68)
T ss_dssp TTEEEEEETTTE
T ss_pred CcEEEEEEccCC
Confidence 788999998754
No 415
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=40.29 E-value=67 Score=22.01 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~-~G-~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
-|+-.+...++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344456778999999988886 45 66666664433334459999998877766443
No 416
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=39.05 E-value=52 Score=18.53 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=39.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcCHHHHHHHHHH
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~A~~a~~~ 166 (235)
.++.|.++.-.--...+...+.. ..|..+.+... .+.+.|+|.+.++...++..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~--~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN--EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS--EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc--CCEEEEEECCHHHHHHHHHH
Confidence 46888898888888999999999 88877776543 33677888755555666653
No 417
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=38.47 E-value=53 Score=21.20 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=19.4
Q ss_pred CCCeEEEEecCHH-----HHHHHHHhcCC
Q 026659 44 PPGYAFLEFEDYR-----DAEDAIRGRDG 67 (235)
Q Consensus 44 ~~g~afV~f~~~~-----~a~~a~~~l~g 67 (235)
-.||.||.+...+ ++...+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 5799999998777 77777876766
No 418
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=38.07 E-value=17 Score=21.06 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=9.8
Q ss_pred CCCeEEEEecCH
Q 026659 44 PPGYAFLEFEDY 55 (235)
Q Consensus 44 ~~g~afV~f~~~ 55 (235)
..+.|+|.|.+-
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 379999999864
No 419
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=36.54 E-value=32 Score=26.07 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=24.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~ 38 (235)
.-+.|+|||+.++..-|..++.. +.+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 45789999999999999999987 65554433
No 420
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=36.47 E-value=17 Score=21.61 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.7
Q ss_pred CCeEEEEecCHH
Q 026659 45 PGYAFLEFEDYR 56 (235)
Q Consensus 45 ~g~afV~f~~~~ 56 (235)
+..|||.|.|..
T Consensus 54 ~e~ClV~F~D~S 65 (79)
T 2m0o_A 54 REVCLVQFEDDS 65 (79)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 788999998754
No 421
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=36.41 E-value=20 Score=16.97 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=12.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh
Q 026659 4 RSSRTLYVGNLPGDTRMREVEDLFY 28 (235)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~ 28 (235)
..-++||||+- +++|..+-+
T Consensus 3 gqvrtiwvggt-----peelkklke 22 (36)
T 2ki0_A 3 GQVRTIWVGGT-----PEELKKLKE 22 (36)
T ss_dssp CSCCCCCBCCC-----HHHHHHHHH
T ss_pred ceeEEEEecCC-----HHHHHHHHH
Confidence 45678888864 556665543
No 422
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.98 E-value=99 Score=19.65 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=27.0
Q ss_pred CeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCC
Q 026659 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (235)
Q Consensus 32 ~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 68 (235)
.|.++... ...+||-|||=..+.+...|+..+.+.
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 46666554 346999999999999999998866554
No 423
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=31.67 E-value=67 Score=17.56 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=37.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEecCCccEEEEEEcC---HHHHHHHHH
Q 026659 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS---YDDMKYAIR 165 (235)
Q Consensus 110 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~---~~~A~~a~~ 165 (235)
.++.|.|+.-.--...+...+.....|..+.+..... .+.|.|.. .++...++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE--QAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCHHHHHHHHH
Confidence 3577888877777888999999988888877765544 67888853 334444443
No 424
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=29.99 E-value=78 Score=25.74 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=40.3
Q ss_pred EEEcCCCCCCC----HHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCCccCCce
Q 026659 9 LYVGNLPGDTR----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (235)
Q Consensus 9 l~v~nl~~~~t----~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (235)
-+||||..-.. ...+.++..+||+|..+++- +.-+|...+++.++.++. -++..+.++.
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 47888864321 35577888899999888773 345677889999999886 3444454443
No 425
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.13 E-value=18 Score=27.65 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=24.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~ 38 (235)
..+.|+|||+.++..-|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 45789999999999999999976545555443
No 426
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=27.44 E-value=56 Score=20.57 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=21.7
Q ss_pred CCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEE
Q 026659 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFL 50 (235)
Q Consensus 18 ~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV 50 (235)
.+++.|.++|+.+|.|..-.+. -||||-
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF-----Gg~~l~ 31 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF-----GGFGLF 31 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET-----TEEEEE
T ss_pred hHHHHHHHHHhccCCceEeecc-----CcEEEE
Confidence 4677899999999999988776 455553
No 427
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=25.46 E-value=37 Score=18.97 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.4
Q ss_pred CCeEEEEecCHH
Q 026659 45 PGYAFLEFEDYR 56 (235)
Q Consensus 45 ~g~afV~f~~~~ 56 (235)
+..|+|.|.+..
T Consensus 31 ~~~clV~F~D~s 42 (58)
T 4hcz_A 31 REVCLVQFEDDS 42 (58)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 568999998754
No 428
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=25.39 E-value=58 Score=28.25 Aligned_cols=54 Identities=17% Similarity=0.346 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHHh----hcCCeeEEEEec--CCCCCCeEEEEecCHHHHHHHHHhcC
Q 026659 13 NLPGDTRMREVEDLFY----KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRD 66 (235)
Q Consensus 13 nl~~~~t~~~l~~~F~----~~G~i~~i~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (235)
..+.+.+--||..+|- .+|.|..+.|.. -.....++++.|.+.++|..++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 4455555557888883 678999988843 23345678999999999999887653
No 429
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=25.33 E-value=1.2e+02 Score=21.46 Aligned_cols=46 Identities=9% Similarity=-0.043 Sum_probs=30.1
Q ss_pred EEcCCCCCCCHHHH--------HHHHhhcCCeeEEEEecCCCCCCeEEEEecCH
Q 026659 10 YVGNLPGDTRMREV--------EDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY 55 (235)
Q Consensus 10 ~v~nl~~~~t~~~l--------~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~ 55 (235)
|+=-||..++.++- .++|..+|-|.++-++.++.....|-|.|.+.
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 45579999998873 34556678888887765433344666666543
No 430
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=24.16 E-value=60 Score=16.20 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHhhc
Q 026659 16 GDTRMREVEDLFYKY 30 (235)
Q Consensus 16 ~~~t~~~l~~~F~~~ 30 (235)
.+++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 468999999999865
No 431
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=23.96 E-value=73 Score=21.59 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=26.6
Q ss_pred eeEEEEecCCCCCCeEEEEecCHHHHHHHHHhcCCC
Q 026659 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (235)
Q Consensus 33 i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 68 (235)
|..+.++. .-+||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 56665542 35899999999999999999877773
No 432
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=23.53 E-value=56 Score=24.37 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=21.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYGPIVD 35 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 35 (235)
-+.|+|||+.++...|..++.....+..
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 5789999999999988888875433433
No 433
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=22.81 E-value=56 Score=25.90 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh
Q 026659 8 TLYVGNLPGDTRMREVEDLFYK 29 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~ 29 (235)
...|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999988875
No 434
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=22.69 E-value=51 Score=24.50 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=22.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 026659 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVD 35 (235)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 35 (235)
..+.|+|+|+.++..-|..++.....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 34789999999999999999876543333
No 435
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.35 E-value=24 Score=26.48 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=24.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 026659 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (235)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~i~~ 38 (235)
-..|+|||+.++...|..++...+.+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 3489999999999999999987655554433
No 436
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=21.51 E-value=71 Score=19.24 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=17.7
Q ss_pred cCCCCCCCHHHHHHHHhhcC
Q 026659 12 GNLPGDTRMREVEDLFYKYG 31 (235)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~G 31 (235)
|.|+..+|+++|.++.+...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67889999999999998864
No 437
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=21.29 E-value=62 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=31.7
Q ss_pred EEcCCCCC---CCHHHHHHHHhhcCCeeEEEEecCCCCCCeEEEEecCHHHHHHHHH
Q 026659 10 YVGNLPGD---TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (235)
Q Consensus 10 ~v~nl~~~---~t~~~l~~~F~~~G~i~~i~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (235)
+|||+..- -....+.++..+||+|..+.+- +.-.|...+++.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH
Confidence 46776432 2234577888999999887763 223455678888887774
No 438
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.63 E-value=62 Score=20.22 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=15.0
Q ss_pred EcCCCCCCCHHHHHHHH-hhcCC
Q 026659 11 VGNLPGDTRMREVEDLF-YKYGP 32 (235)
Q Consensus 11 v~nl~~~~t~~~l~~~F-~~~G~ 32 (235)
|.+|.+.+|-.|+...+ +..|+
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 34677888999987754 44454
No 439
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=20.62 E-value=1.6e+02 Score=19.31 Aligned_cols=35 Identities=9% Similarity=-0.107 Sum_probs=20.2
Q ss_pred cCCceEEEEEecCCccEEEEE-EcCHHHHHHHHHHh
Q 026659 133 AGDVCFSQVFRDRGGMTGIVD-YTSYDDMKYAIRKL 167 (235)
Q Consensus 133 ~g~v~~~~~~~~~~~~~~fV~-f~~~~~A~~a~~~l 167 (235)
+-.|..|.+..|-.--.+||. |.+.++...++..|
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHH
Confidence 346777788777664456666 55554444444333
No 440
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=20.49 E-value=40 Score=19.91 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=8.4
Q ss_pred CCCeEEEEecC
Q 026659 44 PPGYAFLEFED 54 (235)
Q Consensus 44 ~~g~afV~f~~ 54 (235)
.+||+||+=.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 38999998654
No 441
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=20.33 E-value=59 Score=27.23 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=27.9
Q ss_pred HHHHHH--hhcCCeeEEEEecCC--CCCCeEEEEecCHHHHHHHH
Q 026659 22 EVEDLF--YKYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAI 62 (235)
Q Consensus 22 ~l~~~F--~~~G~i~~i~~~~~~--~~~g~afV~f~~~~~a~~a~ 62 (235)
+|..+| +.+|.|..+.+.... .....+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 356677 368999999884432 22345788999988876644
Done!