BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026661
MFAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCS
YCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEA
NLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVEC
FPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQPS

High Scoring Gene Products

Symbol, full name Information P value
LTO1
Lumen Thiol Oxidoreductase 1 		protein from Arabidopsis thaliana 3.5e-68

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026661
        (235 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2128028 - symbol:LTO1 "Lumen Thiol Oxidoreduct...   692  3.5e-68   1


>TAIR|locus:2128028 [details] [associations]
            symbol:LTO1 "Lumen Thiol Oxidoreductase 1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0003955 "NAD(P)H dehydrogenase (quinone) activity"
            evidence=IDA] [GO:0009536 "plastid" evidence=IDA] [GO:0010207
            "photosystem II assembly" evidence=RCA;IMP] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0006098 "pentose-phosphate
            shunt" evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019760
            "glucosinolate metabolic process" evidence=RCA] [GO:0019761
            "glucosinolate biosynthetic process" evidence=RCA] GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:3.40.30.10
            InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0003955 GO:GO:0010207
            InterPro:IPR012932 Pfam:PF07884 SMART:SM00756 EMBL:AY099728
            EMBL:AY128903 IPI:IPI00540301 RefSeq:NP_567988.1 UniGene:At.43284
            ProteinModelPortal:Q8L540 STRING:Q8L540 PRIDE:Q8L540
            EnsemblPlants:AT4G35760.1 GeneID:829729 KEGG:ath:AT4G35760
            TAIR:At4g35760 HOGENOM:HOG000232446 InParanoid:Q8L540 OMA:YWCPHCH
            PhylomeDB:Q8L540 ProtClustDB:CLSN2689775 Genevestigator:Q8L540
            Uniprot:Q8L540
        Length = 376

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 125/211 (59%), Positives = 165/211 (78%)

Query:    18 SFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCXXXXXXXXXXXXXXX 77
             + P GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YC               
Sbjct:   154 NLPFGISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAFLSFSLFFLSV 213

Query:    78 XXXXVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFA 137
                 ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP+F TEI++SSSP+A
Sbjct:   214 KDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELPYFRTEISSSSSPYA 273

Query:   138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD 197
             ++LAKHL++IGAKMYGAFWCSHCLEQK+MFG EA K+LNYVECFPDGY+KGTKI KAC+D
Sbjct:   274 IALAKHLNSIGAKMYGAFWCSHCLEQKEMFGREAAKELNYVECFPDGYKKGTKILKACAD 333

Query:   198 AKIEGFPTWVINGQVLSGEQDLSDLAKASGF 228
             A IEGFPTW+IN +VLSGE +L++LA+ +GF
Sbjct:   334 AAIEGFPTWIINDKVLSGEIELAELAEMTGF 364


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       205   0.00096  111 3  11 22  0.48    32
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  159 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.47u 0.08s 17.55t   Elapsed:  00:00:01
  Total cpu time:  17.47u 0.08s 17.55t   Elapsed:  00:00:01
  Start:  Sat May 11 00:49:49 2013   End:  Sat May 11 00:49:50 2013

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