BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026661
         (235 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54EN4|PDI2_DICDI Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2
           PE=3 SV=1
          Length = 513

 Score = 38.1 bits (87), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFP 204
           H +   M+ A WC HC   K ++  EA KQL+  +         T+  + C   K++G+P
Sbjct: 58  HDVTLVMFYAPWCGHCKTLKPLY-EEAAKQLSANKKIAIAKVDCTQHEQLCKQNKVQGYP 116

Query: 205 TWVI--NGQVLSGEQDLS 220
           T V+  NG+    E D +
Sbjct: 117 TLVVFKNGKAEPYEGDRT 134


>sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
           OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1
          Length = 453

 Score = 36.2 bits (82), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 113 LSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFW-CSHCLEQKQ---MFG 168
           L+ SVA ANL  FE E T       + L K       +    FW   H  + +Q   M G
Sbjct: 329 LACSVALANLEVFEEERTLEKLQPKIKLLK-------ERLQEFWELKHVGDVRQLGFMAG 381

Query: 169 SEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 200
            E VK     E FP G R G K+A  C +  +
Sbjct: 382 IELVKDKEKGEPFPYGERTGFKVAYKCREKGV 413


>sp|Q3UE17|MEX3D_MOUSE RNA-binding protein MEX3D OS=Mus musculus GN=Mex3d PE=2 SV=2
          Length = 643

 Score = 34.7 bits (78), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 10/73 (13%)

Query: 112 PLSSSVAEANLPFFETEITTSSSPFAL--SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 169
           P+++SVA   LP  + +++   SP  +  S A H  A+G     A       EQ  + GS
Sbjct: 101 PVTASVAPGGLPLLDPDVSPRPSPPDVFASFAPHPAALGPSTLLA-------EQLNVIGS 153

Query: 170 EAVKQLNYVECFP 182
              K +N  EC P
Sbjct: 154 RK-KSVNMTECVP 165


>sp|O75448|MED24_HUMAN Mediator of RNA polymerase II transcription subunit 24 OS=Homo
           sapiens GN=MED24 PE=1 SV=1
          Length = 989

 Score = 32.7 bits (73), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 64  TSALLSFSLFFISLKEFSV---EEIQKVLGVQ---LCIASLVVAALSTSYSSIQPLSSSV 117
           T  L SF+  FI+L EF+    EE  K   V+     I+ L++  ++ +Y S   LS S 
Sbjct: 458 TGKLKSFARKFINLNEFTTYGSEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESR 517

Query: 118 AEANLPFFETEITT 131
             A +PFFET + T
Sbjct: 518 TGAEVPFFETWMQT 531


>sp|A8Z5T2|RPOC_SULMW DNA-directed RNA polymerase subunit beta' OS=Sulcia muelleri
           (strain GWSS) GN=rpoC PE=3 SV=2
          Length = 1464

 Score = 31.2 bits (69), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 162 EQKQMFGSEAVKQLNYVECFPDGYRKGTKI 191
           E+ +    E  K+LN VECF +G +KG KI
Sbjct: 236 EESKQRKIELFKRLNVVECFIEGKKKGNKI 265


>sp|Q8NFJ6|PKR2_HUMAN Prokineticin receptor 2 OS=Homo sapiens GN=PROKR2 PE=1 SV=1
          Length = 384

 Score = 30.8 bits (68), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 43  SAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVL 89
            +YFL+I    F G   +  L  A +S  L+F ++  F  E+I+K L
Sbjct: 221 KSYFLFIFGVEFVGPVVTMTLCYARISRELWFKAVPGFQTEQIRKRL 267


>sp|Q8SPN2|PKR1_BOVIN Prokineticin receptor 1 OS=Bos taurus GN=PROKR1 PE=2 SV=1
          Length = 393

 Score = 30.8 bits (68), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 43  SAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVL 89
            +YFL+I    F G   +  L  A +S  L+F ++  F  E+I+K L
Sbjct: 230 KSYFLFIFGIEFVGPVVTMTLCYARISRELWFKAVPGFQTEQIRKRL 276


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.132    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,316,340
Number of Sequences: 539616
Number of extensions: 2780363
Number of successful extensions: 7631
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 7617
Number of HSP's gapped (non-prelim): 28
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)