Query 026661
Match_columns 235
No_of_seqs 195 out of 587
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 10:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03003 PDI_a_ERdj5_N PDIa fam 99.6 2.8E-15 6E-20 114.0 8.0 72 147-226 20-101 (101)
2 cd03006 PDI_a_EFP1_N PDIa fami 99.6 7.9E-15 1.7E-19 116.5 7.6 73 145-225 29-112 (113)
3 cd02996 PDI_a_ERp44 PDIa famil 99.5 2.1E-14 4.6E-19 110.6 8.7 79 140-226 11-108 (108)
4 cd03004 PDI_a_ERdj5_C PDIa fam 99.5 3E-14 6.4E-19 108.5 8.5 72 147-226 21-104 (104)
5 cd02994 PDI_a_TMX PDIa family, 99.5 3.9E-14 8.5E-19 107.3 8.6 79 140-226 11-99 (101)
6 cd02999 PDI_a_ERp44_like PDIa 99.5 6E-14 1.3E-18 108.2 8.7 83 139-226 11-100 (100)
7 cd03002 PDI_a_MPD1_like PDI fa 99.5 9.5E-14 2.1E-18 106.0 7.7 73 148-226 21-108 (109)
8 PHA02278 thioredoxin-like prot 99.5 3.4E-13 7.3E-18 105.5 9.8 85 138-226 5-101 (103)
9 PF00085 Thioredoxin: Thioredo 99.5 3.7E-13 8E-18 100.5 9.5 73 146-226 18-100 (103)
10 KOG0190 Protein disulfide isom 99.5 5.7E-14 1.2E-18 135.8 5.5 74 145-226 42-128 (493)
11 cd02956 ybbN ybbN protein fami 99.4 4.8E-13 1.1E-17 100.2 9.0 72 147-226 14-95 (96)
12 cd03005 PDI_a_ERp46 PDIa famil 99.4 2.6E-13 5.7E-18 101.9 6.9 71 148-226 19-102 (102)
13 TIGR00411 redox_disulf_1 small 99.4 5.1E-13 1.1E-17 97.0 8.0 73 148-226 2-78 (82)
14 cd02993 PDI_a_APS_reductase PD 99.4 9.7E-13 2.1E-17 102.1 8.6 74 146-226 22-109 (109)
15 cd03001 PDI_a_P5 PDIa family, 99.4 1.8E-12 3.8E-17 97.6 8.8 72 147-226 20-102 (103)
16 PTZ00443 Thioredoxin domain-co 99.4 6E-12 1.3E-16 111.2 12.8 72 146-225 53-134 (224)
17 cd02963 TRX_DnaJ TRX domain, D 99.4 1.8E-12 3.8E-17 101.4 8.3 73 146-226 25-108 (111)
18 PHA02125 thioredoxin-like prot 99.4 2.5E-12 5.5E-17 94.1 8.4 69 149-227 2-74 (75)
19 cd03007 PDI_a_ERp29_N PDIa fam 99.4 2.3E-12 5.1E-17 103.4 8.2 79 146-227 19-113 (116)
20 cd02985 TRX_CDSP32 TRX family, 99.4 4.4E-12 9.6E-17 97.7 9.4 86 139-228 5-101 (103)
21 cd02997 PDI_a_PDIR PDIa family 99.3 4.7E-12 1E-16 95.2 8.5 74 147-226 19-104 (104)
22 cd03000 PDI_a_TMX3 PDIa family 99.3 2.9E-12 6.3E-17 98.2 6.9 73 146-226 16-100 (104)
23 cd02998 PDI_a_ERp38 PDIa famil 99.3 3.6E-12 7.8E-17 95.6 7.2 73 147-226 20-105 (105)
24 cd02995 PDI_a_PDI_a'_C PDIa fa 99.3 5.1E-12 1.1E-16 94.8 7.5 72 146-226 19-104 (104)
25 cd02948 TRX_NDPK TRX domain, T 99.3 1.5E-11 3.3E-16 94.5 9.3 80 139-226 9-99 (102)
26 PTZ00102 disulphide isomerase; 99.3 1.4E-11 3.1E-16 116.3 11.0 74 146-227 50-135 (477)
27 cd02992 PDI_a_QSOX PDIa family 99.3 1.3E-11 2.7E-16 97.3 8.1 72 147-224 21-110 (114)
28 cd02954 DIM1 Dim1 family; Dim1 99.3 1.1E-11 2.3E-16 99.3 6.9 65 147-217 16-88 (114)
29 PRK09381 trxA thioredoxin; Pro 99.3 4E-11 8.6E-16 92.1 9.6 74 145-226 21-104 (109)
30 cd02975 PfPDO_like_N Pyrococcu 99.3 2.3E-11 4.9E-16 95.8 8.2 81 140-226 15-106 (113)
31 PRK10996 thioredoxin 2; Provis 99.2 6E-11 1.3E-15 96.6 10.3 75 146-226 53-135 (139)
32 TIGR02196 GlrX_YruB Glutaredox 99.2 4.5E-11 9.7E-16 83.8 8.3 72 149-226 2-73 (74)
33 cd02953 DsbDgamma DsbD gamma f 99.2 4E-11 8.8E-16 91.5 8.6 79 146-226 12-103 (104)
34 cd02950 TxlA TRX-like protein 99.2 3.2E-11 6.9E-16 98.8 8.3 83 141-227 16-107 (142)
35 cd02949 TRX_NTR TRX domain, no 99.2 5.5E-11 1.2E-15 90.1 8.8 76 145-226 13-96 (97)
36 cd02973 TRX_GRX_like Thioredox 99.2 2E-11 4.2E-16 86.3 5.8 62 148-215 2-66 (67)
37 cd02947 TRX_family TRX family; 99.2 6.9E-11 1.5E-15 84.7 8.7 73 146-226 11-92 (93)
38 TIGR01126 pdi_dom protein disu 99.2 5.3E-11 1.1E-15 88.8 8.3 70 149-226 17-98 (102)
39 cd03065 PDI_b_Calsequestrin_N 99.2 2.9E-11 6.3E-16 97.3 7.4 82 139-226 18-115 (120)
40 KOG4277 Uncharacterized conser 99.2 7E-12 1.5E-16 115.3 3.8 71 149-227 47-129 (468)
41 cd02984 TRX_PICOT TRX domain, 99.2 7.8E-11 1.7E-15 88.0 8.9 74 146-226 15-96 (97)
42 cd02961 PDI_a_family Protein D 99.2 7.4E-11 1.6E-15 86.4 8.4 80 139-226 7-101 (101)
43 PTZ00051 thioredoxin; Provisio 99.2 9.1E-11 2E-15 88.0 8.6 78 140-224 11-97 (98)
44 smart00756 VKc Family of likel 99.2 6.6E-11 1.4E-15 97.5 8.1 74 2-80 69-142 (142)
45 TIGR01068 thioredoxin thioredo 99.2 1.3E-10 2.8E-15 86.1 8.4 72 147-226 16-97 (101)
46 COG4243 Predicted membrane pro 99.2 3.7E-11 7.9E-16 100.7 5.9 75 2-82 76-150 (156)
47 cd02951 SoxW SoxW family; SoxW 99.2 1.9E-10 4E-15 90.7 9.4 88 139-226 7-115 (125)
48 cd02965 HyaE HyaE family; HyaE 99.2 7.6E-11 1.7E-15 94.0 7.1 71 148-224 30-110 (111)
49 TIGR00424 APS_reduc 5'-adenyly 99.2 8.4E-11 1.8E-15 113.6 8.7 77 145-227 371-460 (463)
50 TIGR00412 redox_disulf_2 small 99.2 9.9E-11 2.2E-15 86.2 7.0 69 150-227 3-76 (76)
51 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 1.2E-10 2.7E-15 88.7 7.4 81 138-224 4-88 (89)
52 cd02962 TMX2 TMX2 family; comp 99.1 5.2E-10 1.1E-14 93.4 11.1 73 148-226 50-148 (152)
53 cd02989 Phd_like_TxnDC9 Phosdu 99.1 2E-10 4.4E-15 90.5 8.2 67 139-211 14-86 (113)
54 TIGR01130 ER_PDI_fam protein d 99.1 1.9E-10 4.1E-15 107.1 8.8 74 147-228 20-107 (462)
55 TIGR01295 PedC_BrcD bacterioci 99.1 3E-10 6.5E-15 91.1 8.6 88 139-226 15-120 (122)
56 TIGR02187 GlrX_arch Glutaredox 99.1 2.3E-10 5E-15 99.1 8.5 83 138-226 125-212 (215)
57 PRK00293 dipZ thiol:disulfide 99.1 5.4E-09 1.2E-13 103.2 19.2 80 145-226 474-566 (571)
58 TIGR02180 GRX_euk Glutaredoxin 99.1 2E-10 4.2E-15 83.7 6.7 75 149-224 1-76 (84)
59 cd02957 Phd_like Phosducin (Ph 99.1 1.6E-10 3.4E-15 90.3 6.5 66 146-218 25-97 (113)
60 KOG0907 Thioredoxin [Posttrans 99.1 2.5E-10 5.4E-15 90.1 6.9 74 145-225 21-101 (106)
61 PLN02309 5'-adenylylsulfate re 99.1 4.7E-10 1E-14 108.3 9.2 75 145-226 365-453 (457)
62 TIGR02187 GlrX_arch Glutaredox 99.1 4.1E-10 8.8E-15 97.6 7.9 79 141-225 14-106 (215)
63 PTZ00102 disulphide isomerase; 99.1 4.1E-10 8.9E-15 106.4 8.3 77 146-230 376-465 (477)
64 COG3118 Thioredoxin domain-con 99.1 4E-10 8.7E-15 103.1 7.8 87 133-227 30-127 (304)
65 KOG0910 Thioredoxin-like prote 99.0 6.2E-10 1.4E-14 93.0 7.7 89 132-226 48-144 (150)
66 KOG0190 Protein disulfide isom 99.0 4.9E-10 1.1E-14 108.7 6.7 79 145-231 384-474 (493)
67 KOG0191 Thioredoxin/protein di 99.0 8.5E-10 1.8E-14 103.2 7.1 83 137-227 39-131 (383)
68 PLN00410 U5 snRNP protein, DIM 98.9 4.7E-09 1E-13 87.1 9.1 84 137-226 11-116 (142)
69 PHA03050 glutaredoxin; Provisi 98.9 4E-09 8.8E-14 83.3 8.3 84 139-223 5-90 (108)
70 KOG1731 FAD-dependent sulfhydr 98.9 1.1E-09 2.3E-14 107.3 5.6 70 147-222 59-145 (606)
71 TIGR02189 GlrX-like_plant Glut 98.9 3.6E-09 7.8E-14 82.0 7.3 79 142-223 3-82 (99)
72 PF13098 Thioredoxin_2: Thiore 98.9 3E-09 6.5E-14 81.5 6.5 81 146-226 6-112 (112)
73 cd02952 TRP14_like Human TRX-r 98.9 8.3E-09 1.8E-13 83.1 8.1 79 147-225 23-117 (119)
74 cd02959 ERp19 Endoplasmic reti 98.8 1.1E-08 2.3E-13 81.3 7.2 72 135-211 9-88 (117)
75 cd03419 GRX_GRXh_1_2_like Glut 98.8 1.4E-08 3.1E-13 73.7 6.9 74 149-224 2-75 (82)
76 cd02976 NrdH NrdH-redoxin (Nrd 98.8 2.1E-08 4.6E-13 70.1 6.9 71 149-225 2-72 (73)
77 cd02986 DLP Dim1 family, Dim1- 98.8 1.5E-08 3.2E-13 81.3 6.8 60 146-211 15-79 (114)
78 PF07884 VKOR: Vitamin K epoxi 98.8 2.3E-08 4.9E-13 81.3 7.6 73 2-79 65-137 (137)
79 KOG0912 Thiol-disulfide isomer 98.8 4.6E-09 9.9E-14 96.7 3.8 78 145-230 13-106 (375)
80 TIGR02181 GRX_bact Glutaredoxi 98.8 1.6E-08 3.5E-13 73.8 6.0 71 149-224 1-71 (79)
81 PRK11200 grxA glutaredoxin 1; 98.8 2.3E-08 4.9E-13 74.4 6.8 75 148-224 2-80 (85)
82 TIGR02200 GlrX_actino Glutared 98.8 2.9E-08 6.2E-13 70.9 7.1 70 149-225 2-74 (77)
83 cd03010 TlpA_like_DsbE TlpA-li 98.8 2.8E-08 6E-13 78.0 7.3 85 138-222 18-126 (127)
84 TIGR02190 GlrX-dom Glutaredoxi 98.7 2.8E-08 6E-13 73.3 6.3 70 145-220 6-75 (79)
85 cd02066 GRX_family Glutaredoxi 98.7 4.6E-08 9.9E-13 67.8 6.6 68 149-223 2-71 (72)
86 cd02987 Phd_like_Phd Phosducin 98.7 2.7E-08 5.8E-13 84.6 6.3 58 147-211 85-146 (175)
87 TIGR00365 monothiol glutaredox 98.7 6.7E-08 1.5E-12 74.6 7.9 81 139-224 4-89 (97)
88 COG0695 GrxC Glutaredoxin and 98.7 6.9E-08 1.5E-12 72.2 7.7 74 148-225 2-76 (80)
89 TIGR01130 ER_PDI_fam protein d 98.7 3E-08 6.6E-13 92.4 7.0 77 145-231 364-455 (462)
90 TIGR00385 dsbE periplasmic pro 98.7 1.6E-07 3.5E-12 78.6 10.4 82 145-226 63-167 (173)
91 PRK15412 thiol:disulfide inter 98.7 3.6E-07 7.8E-12 77.5 12.5 82 145-226 68-172 (185)
92 cd03418 GRX_GRXb_1_3_like Glut 98.7 9.9E-08 2.2E-12 68.4 7.4 71 149-224 2-73 (75)
93 TIGR02183 GRXA Glutaredoxin, G 98.6 7.3E-08 1.6E-12 72.4 6.5 74 149-224 2-79 (86)
94 cd02955 SSP411 TRX domain, SSP 98.6 8.9E-08 1.9E-12 77.4 7.4 72 134-211 4-92 (124)
95 PRK03147 thiol-disulfide oxido 98.6 2.1E-07 4.6E-12 76.3 9.7 89 138-226 54-168 (173)
96 TIGR02740 TraF-like TraF-like 98.6 1.2E-07 2.5E-12 85.9 8.6 89 138-226 159-260 (271)
97 KOG0191 Thioredoxin/protein di 98.6 5.7E-08 1.2E-12 90.9 6.6 79 141-227 158-249 (383)
98 cd03027 GRX_DEP Glutaredoxin ( 98.6 4.7E-08 1E-12 70.6 4.5 70 149-223 3-72 (73)
99 cd02982 PDI_b'_family Protein 98.6 1.3E-07 2.8E-12 71.2 6.9 75 146-226 13-99 (103)
100 PF00462 Glutaredoxin: Glutare 98.6 6.1E-08 1.3E-12 67.5 4.7 59 149-212 1-59 (60)
101 cd03028 GRX_PICOT_like Glutare 98.6 8.4E-08 1.8E-12 72.7 5.3 78 142-224 3-85 (90)
102 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.9E-07 4.1E-12 67.5 6.7 71 149-225 1-71 (72)
103 TIGR02738 TrbB type-F conjugat 98.6 2.3E-07 4.9E-12 77.5 8.1 82 144-225 49-148 (153)
104 cd03011 TlpA_like_ScsD_MtbDsbE 98.6 2.3E-07 5E-12 72.0 7.2 87 138-225 13-121 (123)
105 PRK14018 trifunctional thiored 98.5 3.8E-07 8.3E-12 89.5 10.2 82 146-227 57-170 (521)
106 cd03029 GRX_hybridPRX5 Glutare 98.5 2.2E-07 4.8E-12 66.8 6.4 69 148-225 2-70 (72)
107 cd02988 Phd_like_VIAF Phosduci 98.5 2.1E-07 4.5E-12 80.4 7.0 60 148-216 105-171 (192)
108 PRK14889 VKOR family protein; 98.5 3.3E-07 7.1E-12 75.9 7.7 70 2-78 70-139 (143)
109 PF13192 Thioredoxin_3: Thiore 98.5 3.7E-07 8E-12 67.0 7.0 70 149-226 3-75 (76)
110 PRK10638 glutaredoxin 3; Provi 98.5 3.6E-07 7.8E-12 67.7 6.8 72 148-224 3-74 (83)
111 PTZ00062 glutaredoxin; Provisi 98.5 4.1E-07 8.9E-12 79.5 8.1 73 137-224 6-88 (204)
112 KOG0908 Thioredoxin-like prote 98.5 2.5E-07 5.4E-12 83.4 6.4 74 138-217 14-94 (288)
113 PRK10329 glutaredoxin-like pro 98.5 6.7E-07 1.4E-11 67.0 7.6 70 148-226 2-73 (81)
114 smart00594 UAS UAS domain. 98.5 1.2E-06 2.7E-11 69.6 9.6 97 125-225 7-120 (122)
115 KOG1752 Glutaredoxin and relat 98.4 9.4E-07 2E-11 69.8 8.0 83 140-224 7-89 (104)
116 cd03009 TryX_like_TryX_NRX Try 98.4 5.3E-07 1.1E-11 71.2 5.6 75 137-211 10-111 (131)
117 cd02958 UAS UAS family; UAS is 98.4 2.1E-06 4.5E-11 66.9 8.3 88 135-226 7-107 (114)
118 PRK13728 conjugal transfer pro 98.3 2.1E-06 4.5E-11 74.0 8.5 77 149-225 73-166 (181)
119 cd02964 TryX_like_family Trypa 98.3 1.2E-06 2.5E-11 69.9 5.5 76 136-211 8-111 (132)
120 TIGR03143 AhpF_homolog putativ 98.3 2.6E-06 5.6E-11 83.6 8.6 84 136-227 466-555 (555)
121 cd02966 TlpA_like_family TlpA- 98.3 1.7E-06 3.8E-11 63.9 5.7 74 138-211 12-109 (116)
122 PRK10824 glutaredoxin-4; Provi 98.3 2.7E-06 5.9E-11 68.3 7.1 82 138-224 6-92 (115)
123 cd01659 TRX_superfamily Thiore 98.2 3.3E-06 7.1E-11 54.6 5.3 57 149-208 1-59 (69)
124 PF13899 Thioredoxin_7: Thiore 98.2 4.2E-06 9E-11 61.8 6.3 66 136-208 8-79 (82)
125 cd02967 mauD Methylamine utili 98.1 2.2E-06 4.8E-11 65.6 3.8 66 138-206 13-82 (114)
126 PTZ00062 glutaredoxin; Provisi 98.1 1.2E-05 2.5E-10 70.4 8.6 84 136-224 102-190 (204)
127 PRK12759 bifunctional gluaredo 98.1 6.3E-06 1.4E-10 78.6 7.1 66 148-221 3-79 (410)
128 cd02960 AGR Anterior Gradient 98.1 1.3E-05 2.8E-10 65.7 7.1 70 135-211 13-91 (130)
129 PF13905 Thioredoxin_8: Thiore 98.0 9.1E-06 2E-10 60.4 5.5 65 147-211 3-94 (95)
130 TIGR02661 MauD methylamine deh 98.0 3.1E-05 6.7E-10 66.0 8.9 81 146-226 75-175 (189)
131 cd03023 DsbA_Com1_like DsbA fa 98.0 3.7E-05 8E-10 60.9 8.6 34 193-226 120-153 (154)
132 PLN02919 haloacid dehalogenase 98.0 1.9E-05 4.1E-10 83.4 8.5 82 145-226 420-532 (1057)
133 COG4232 Thiol:disulfide interc 97.9 0.00012 2.6E-09 72.5 12.6 90 135-226 464-564 (569)
134 PRK15317 alkyl hydroperoxide r 97.9 3.6E-05 7.8E-10 74.8 8.3 87 135-229 105-197 (517)
135 cd03008 TryX_like_RdCVF Trypar 97.9 1.9E-05 4E-10 65.7 5.4 73 139-211 19-124 (146)
136 cd03020 DsbA_DsbC_DsbG DsbA fa 97.9 2.2E-05 4.8E-10 66.9 5.2 36 190-225 160-196 (197)
137 COG0526 TrxA Thiol-disulfide i 97.8 6.6E-05 1.4E-09 54.0 6.1 76 148-228 35-122 (127)
138 cd03012 TlpA_like_DipZ_like Tl 97.7 0.0001 2.2E-09 58.1 6.5 33 138-170 16-48 (126)
139 PF08534 Redoxin: Redoxin; In 97.6 0.00014 3.1E-09 58.1 6.0 84 135-218 18-136 (146)
140 TIGR03140 AhpF alkyl hydropero 97.6 0.0002 4.3E-09 69.7 8.1 85 135-227 106-196 (515)
141 KOG0913 Thiol-disulfide isomer 97.6 1.5E-05 3.2E-10 71.2 0.3 84 139-230 33-126 (248)
142 PF13728 TraF: F plasmid trans 97.5 0.00046 9.9E-09 60.6 8.8 87 139-225 114-213 (215)
143 TIGR01626 ytfJ_HI0045 conserve 97.5 0.00022 4.8E-09 61.6 6.3 86 141-226 55-176 (184)
144 cd00340 GSH_Peroxidase Glutath 97.5 0.00038 8.3E-09 56.8 7.1 33 137-170 14-46 (152)
145 cd03031 GRX_GRX_like Glutaredo 97.5 0.00039 8.4E-09 58.0 6.9 71 149-224 2-82 (147)
146 cd02972 DsbA_family DsbA famil 97.4 0.00052 1.1E-08 49.5 6.4 67 150-216 2-97 (98)
147 PRK10877 protein disulfide iso 97.4 0.00035 7.7E-09 61.8 6.3 38 190-227 190-228 (232)
148 PTZ00056 glutathione peroxidas 97.3 0.0014 3.1E-08 56.6 8.4 34 137-170 31-64 (199)
149 KOG2501 Thioredoxin, nucleored 97.2 0.00029 6.3E-09 59.6 3.6 71 141-211 28-127 (157)
150 PRK11509 hydrogenase-1 operon 97.0 0.0015 3.3E-08 53.7 6.0 83 139-227 26-121 (132)
151 PF06110 DUF953: Eukaryotic pr 97.0 0.00033 7.1E-09 56.7 2.0 63 153-216 34-105 (119)
152 cd02969 PRX_like1 Peroxiredoxi 96.9 0.003 6.5E-08 52.2 7.0 78 138-215 17-126 (171)
153 PF14595 Thioredoxin_9: Thiore 96.9 0.00067 1.4E-08 55.2 2.8 82 133-219 29-119 (129)
154 PLN02399 phospholipid hydroper 96.9 0.0061 1.3E-07 54.5 8.9 35 136-170 90-124 (236)
155 TIGR02540 gpx7 putative glutat 96.8 0.0074 1.6E-07 49.1 8.0 32 138-169 15-46 (153)
156 PF03190 Thioredox_DsbH: Prote 96.7 0.0057 1.2E-07 52.1 6.8 72 134-211 26-114 (163)
157 cd03017 PRX_BCP Peroxiredoxin 96.7 0.0057 1.2E-07 48.1 6.3 88 138-225 16-138 (140)
158 PLN02412 probable glutathione 96.6 0.0074 1.6E-07 50.4 7.2 33 137-169 21-53 (167)
159 TIGR02739 TraF type-F conjugat 96.5 0.013 2.8E-07 53.2 8.5 86 140-225 145-243 (256)
160 PRK13703 conjugal pilus assemb 96.4 0.017 3.7E-07 52.2 8.6 84 141-224 138-235 (248)
161 cd02991 UAS_ETEA UAS family, E 96.4 0.018 3.8E-07 46.0 7.7 84 136-226 8-109 (116)
162 PF00578 AhpC-TSA: AhpC/TSA fa 96.4 0.0042 9E-08 47.7 3.9 33 137-169 17-50 (124)
163 PTZ00256 glutathione peroxidas 96.4 0.0075 1.6E-07 51.0 5.6 32 137-169 32-65 (183)
164 cd03014 PRX_Atyp2cys Peroxired 96.3 0.0045 9.8E-08 49.3 3.7 34 137-170 18-52 (143)
165 cd03060 GST_N_Omega_like GST_N 96.3 0.016 3.4E-07 41.1 6.1 58 150-213 2-60 (71)
166 PF13462 Thioredoxin_4: Thiore 96.1 0.0066 1.4E-07 48.7 4.0 35 192-226 126-160 (162)
167 cd03015 PRX_Typ2cys Peroxiredo 96.1 0.026 5.6E-07 47.0 7.3 33 137-169 21-54 (173)
168 COG2143 Thioredoxin-related pr 96.0 0.024 5.1E-07 48.5 6.8 80 149-228 46-147 (182)
169 KOG3425 Uncharacterized conser 95.8 0.0058 1.3E-07 49.9 2.3 63 154-217 42-113 (128)
170 cd02970 PRX_like2 Peroxiredoxi 95.8 0.022 4.8E-07 44.9 5.6 64 138-205 15-84 (149)
171 cd00570 GST_N_family Glutathio 95.8 0.045 9.9E-07 36.5 6.3 61 150-215 2-62 (71)
172 PRK13190 putative peroxiredoxi 95.7 0.035 7.5E-07 47.9 6.9 90 137-226 19-150 (202)
173 PRK00522 tpx lipid hydroperoxi 95.7 0.011 2.5E-07 49.2 3.5 34 137-170 36-70 (167)
174 PF05768 DUF836: Glutaredoxin- 95.4 0.12 2.5E-06 38.2 7.9 69 149-226 2-80 (81)
175 cd03037 GST_N_GRX2 GST_N famil 95.4 0.056 1.2E-06 38.1 5.9 60 150-216 2-62 (71)
176 cd03018 PRX_AhpE_like Peroxire 95.3 0.024 5.2E-07 45.1 4.1 33 137-169 19-53 (149)
177 cd03051 GST_N_GTT2_like GST_N 95.2 0.056 1.2E-06 37.6 5.4 60 150-212 2-62 (74)
178 PRK10382 alkyl hydroperoxide r 95.2 0.062 1.3E-06 46.2 6.7 91 136-226 22-152 (187)
179 PRK11657 dsbG disulfide isomer 95.2 0.038 8.3E-07 49.5 5.4 36 192-227 209-249 (251)
180 cd03022 DsbA_HCCA_Iso DsbA fam 95.2 0.03 6.4E-07 46.4 4.4 36 192-227 157-192 (192)
181 TIGR03137 AhpC peroxiredoxin. 95.1 0.084 1.8E-06 44.8 7.0 33 137-169 23-56 (187)
182 cd03045 GST_N_Delta_Epsilon GS 94.8 0.12 2.6E-06 36.3 6.2 61 149-212 1-61 (74)
183 cd02977 ArsC_family Arsenate R 94.6 0.067 1.5E-06 41.1 4.9 49 149-199 1-49 (105)
184 cd03036 ArsC_like Arsenate Red 94.6 0.062 1.3E-06 42.2 4.7 50 149-200 1-50 (111)
185 cd03016 PRX_1cys Peroxiredoxin 94.2 0.12 2.5E-06 44.6 5.9 32 138-169 17-50 (203)
186 cd03059 GST_N_SspA GST_N famil 94.2 0.25 5.3E-06 34.5 6.6 58 149-212 1-58 (73)
187 cd03035 ArsC_Yffb Arsenate Red 94.1 0.068 1.5E-06 41.8 4.0 49 149-199 1-49 (105)
188 PF01323 DSBA: DSBA-like thior 94.1 0.067 1.4E-06 44.2 4.1 35 192-226 157-192 (193)
189 PF13417 GST_N_3: Glutathione 93.9 0.3 6.5E-06 35.0 6.7 60 151-216 1-60 (75)
190 cd03040 GST_N_mPGES2 GST_N fam 93.8 0.22 4.7E-06 35.5 5.9 51 149-209 2-54 (77)
191 KOG0914 Thioredoxin-like prote 93.8 0.33 7.2E-06 43.7 8.0 66 138-211 137-216 (265)
192 TIGR01617 arsC_related transcr 93.5 0.12 2.6E-06 40.7 4.3 64 149-215 1-65 (117)
193 PTZ00253 tryparedoxin peroxida 93.4 0.22 4.8E-06 42.6 6.2 90 137-226 28-160 (199)
194 PRK15000 peroxidase; Provision 93.0 0.29 6.3E-06 42.3 6.3 90 137-226 25-158 (200)
195 PRK13189 peroxiredoxin; Provis 92.9 0.25 5.5E-06 43.4 6.0 89 138-226 27-159 (222)
196 cd02968 SCO SCO (an acronym fo 92.8 0.2 4.4E-06 39.3 4.7 32 138-169 15-47 (142)
197 cd02971 PRX_family Peroxiredox 92.7 0.17 3.6E-06 39.6 4.1 31 139-169 16-47 (140)
198 PRK09437 bcp thioredoxin-depen 92.6 0.21 4.6E-06 40.2 4.6 33 137-169 22-55 (154)
199 cd03024 DsbA_FrnE DsbA family, 92.6 0.19 4.1E-06 42.0 4.5 35 192-226 165-200 (201)
200 PRK01655 spxA transcriptional 92.2 0.27 5.8E-06 39.9 4.8 48 149-198 2-49 (131)
201 PRK10606 btuE putative glutath 92.2 0.28 6E-06 42.2 5.2 73 137-211 17-102 (183)
202 KOG0911 Glutaredoxin-related p 91.8 0.14 3E-06 45.8 2.9 68 148-221 20-94 (227)
203 PRK13599 putative peroxiredoxi 91.7 0.64 1.4E-05 40.7 6.9 20 150-169 34-53 (215)
204 COG4545 Glutaredoxin-related p 91.6 0.34 7.4E-06 36.7 4.3 65 150-215 5-78 (85)
205 cd03055 GST_N_Omega GST_N fami 91.5 0.78 1.7E-05 34.1 6.3 58 149-212 19-77 (89)
206 cd03041 GST_N_2GST_N GST_N fam 91.5 0.9 1.9E-05 32.7 6.5 53 149-208 2-56 (77)
207 cd03056 GST_N_4 GST_N family, 90.9 1 2.2E-05 31.2 6.1 61 150-213 2-62 (73)
208 cd03032 ArsC_Spx Arsenate Redu 90.8 0.49 1.1E-05 37.2 4.8 49 149-199 2-50 (115)
209 PRK10954 periplasmic protein d 90.7 0.25 5.4E-06 42.5 3.3 36 193-228 158-202 (207)
210 PTZ00137 2-Cys peroxiredoxin; 90.2 1.3 2.9E-05 40.2 7.7 90 137-226 89-221 (261)
211 cd03019 DsbA_DsbA DsbA family, 90.1 0.37 8E-06 39.2 3.7 29 192-220 133-161 (178)
212 COG1651 DsbG Protein-disulfide 89.9 0.47 1E-05 41.2 4.4 36 191-226 204-239 (244)
213 PRK12559 transcriptional regul 89.9 0.65 1.4E-05 37.8 4.9 34 149-183 2-35 (131)
214 PRK13191 putative peroxiredoxi 88.1 1.5 3.2E-05 38.4 6.3 32 138-169 25-58 (215)
215 TIGR01598 holin_phiLC3 holin, 87.5 2.6 5.6E-05 31.9 6.3 45 64-109 17-61 (78)
216 PRK13344 spxA transcriptional 86.3 1.4 3.1E-05 35.8 4.8 49 149-199 2-50 (132)
217 COG2761 FrnE Predicted dithiol 83.9 1.3 2.9E-05 39.6 3.9 33 193-225 175-208 (225)
218 cd03033 ArsC_15kD Arsenate Red 82.6 2.1 4.6E-05 33.9 4.1 22 148-169 1-22 (113)
219 cd03030 GRX_SH3BGR Glutaredoxi 81.0 5 0.00011 30.8 5.6 62 158-224 17-82 (92)
220 KOG2640 Thioredoxin [Function 81.0 0.45 9.9E-06 44.5 -0.2 80 141-225 70-157 (319)
221 cd03019 DsbA_DsbA DsbA family, 78.1 1.8 3.8E-05 35.2 2.4 25 146-170 16-40 (178)
222 cd03058 GST_N_Tau GST_N family 77.0 13 0.00028 26.0 6.4 58 149-213 1-60 (74)
223 cd02981 PDI_b_family Protein D 76.5 22 0.00048 25.8 7.9 69 145-226 17-94 (97)
224 PF13462 Thioredoxin_4: Thiore 72.2 4 8.7E-05 32.4 3.0 23 147-169 14-36 (162)
225 PF04531 Phage_holin_1: Bacter 71.8 12 0.00027 28.2 5.5 20 91-110 46-65 (84)
226 PF13743 Thioredoxin_5: Thiore 71.5 2.9 6.2E-05 35.3 2.1 32 192-223 137-175 (176)
227 PF02114 Phosducin: Phosducin; 71.2 7.9 0.00017 35.2 5.1 57 148-211 149-209 (265)
228 PF13848 Thioredoxin_6: Thiore 70.7 42 0.0009 27.0 8.8 70 149-226 99-182 (184)
229 PRK10452 multidrug efflux syst 69.4 30 0.00065 27.9 7.5 66 34-101 34-101 (120)
230 cd03054 GST_N_Metaxin GST_N fa 68.8 17 0.00037 25.3 5.4 50 154-216 13-62 (72)
231 cd03021 DsbA_GSTK DsbA family, 68.5 7.2 0.00016 33.3 4.0 35 193-227 170-209 (209)
232 TIGR03143 AhpF_homolog putativ 68.4 24 0.00053 34.8 8.2 70 143-218 363-442 (555)
233 PF01216 Calsequestrin: Calseq 67.0 26 0.00056 33.7 7.6 79 140-226 44-140 (383)
234 cd03053 GST_N_Phi GST_N family 66.5 34 0.00073 23.7 6.6 62 149-213 2-63 (76)
235 COG3634 AhpF Alkyl hydroperoxi 66.3 11 0.00024 36.6 5.0 83 138-226 105-194 (520)
236 PF13848 Thioredoxin_6: Thiore 65.8 18 0.00039 29.1 5.7 53 164-226 9-71 (184)
237 cd02983 P5_C P5 family, C-term 65.4 22 0.00048 28.6 6.1 60 162-227 41-112 (130)
238 PRK10954 periplasmic protein d 64.2 3.5 7.7E-05 35.4 1.3 22 146-167 38-59 (207)
239 PRK04307 putative disulfide ox 63.1 29 0.00062 31.0 6.8 50 26-79 23-73 (218)
240 COG3019 Predicted metal-bindin 61.7 56 0.0012 27.6 7.8 73 147-228 26-102 (149)
241 PF06953 ArsD: Arsenical resis 61.6 12 0.00025 30.5 3.8 43 191-233 61-105 (123)
242 PRK09481 sspA stringent starva 61.1 31 0.00068 29.1 6.5 57 149-211 11-67 (211)
243 cd03052 GST_N_GDAP1 GST_N fami 60.2 39 0.00084 24.0 6.0 60 150-212 2-61 (73)
244 cd03049 GST_N_3 GST_N family, 58.8 41 0.00089 23.2 5.8 57 150-212 2-61 (73)
245 TIGR00014 arsC arsenate reduct 58.0 26 0.00055 27.5 5.1 50 149-200 1-50 (114)
246 PRK01749 disulfide bond format 57.1 51 0.0011 28.0 7.1 49 26-78 12-60 (176)
247 PRK09541 emrE multidrug efflux 56.3 74 0.0016 25.1 7.5 71 29-101 29-101 (110)
248 PF07912 ERp29_N: ERp29, N-ter 56.1 51 0.0011 27.2 6.5 35 192-226 71-115 (126)
249 PRK02110 disulfide bond format 56.1 45 0.00098 28.2 6.6 47 26-76 12-58 (169)
250 cd03061 GST_N_CLIC GST_N famil 54.3 42 0.00092 25.7 5.6 54 154-215 19-74 (91)
251 PF14673 DUF4459: Domain of un 53.9 4.8 0.0001 32.8 0.3 18 148-170 92-109 (159)
252 KOG3414 Component of the U4/U6 53.8 36 0.00078 28.4 5.4 61 145-211 23-88 (142)
253 PRK10650 multidrug efflux syst 52.7 1E+02 0.0023 24.4 7.7 73 26-100 31-105 (109)
254 PRK11431 multidrug efflux syst 51.2 1.2E+02 0.0026 23.8 8.0 72 28-101 27-100 (105)
255 cd03013 PRX5_like Peroxiredoxi 50.4 17 0.00038 29.8 3.1 65 137-204 20-93 (155)
256 COG3531 Predicted protein-disu 49.3 19 0.00042 32.0 3.3 20 192-211 164-185 (212)
257 cd03067 PDI_b_PDIR_N PDIb fami 49.0 53 0.0011 26.4 5.4 83 137-226 9-108 (112)
258 COG5494 Predicted thioredoxin/ 48.5 89 0.0019 28.3 7.4 75 144-226 8-84 (265)
259 PRK15051 4-amino-4-deoxy-L-ara 48.3 1.3E+02 0.0028 23.4 9.5 62 40-102 47-108 (111)
260 cd03038 GST_N_etherase_LigE GS 47.4 28 0.00062 24.9 3.6 55 155-213 14-69 (84)
261 cd03042 GST_N_Zeta GST_N famil 47.3 79 0.0017 21.4 5.7 60 150-213 2-62 (73)
262 PF07449 HyaE: Hydrogenase-1 e 47.2 28 0.00061 27.6 3.7 31 191-221 71-106 (107)
263 PRK04388 disulfide bond format 47.0 74 0.0016 26.9 6.5 49 27-79 10-58 (172)
264 cd03073 PDI_b'_ERp72_ERp57 PDI 46.7 49 0.0011 25.9 5.0 60 161-226 34-107 (111)
265 PF09862 DUF2089: Protein of u 45.6 1.1 2.3E-05 36.2 -4.6 28 191-228 52-79 (113)
266 cd03034 ArsC_ArsC Arsenate Red 44.8 52 0.0011 25.6 4.9 49 149-199 1-49 (112)
267 TIGR02182 GRXB Glutaredoxin, G 42.7 66 0.0014 27.3 5.6 56 150-212 1-57 (209)
268 PHA03049 IMV membrane protein; 42.1 26 0.00056 25.8 2.5 24 86-110 3-26 (68)
269 PRK10387 glutaredoxin 2; Provi 41.3 88 0.0019 25.9 6.1 56 149-211 1-57 (210)
270 COG5393 Predicted membrane pro 41.2 93 0.002 25.6 5.8 57 27-83 46-103 (131)
271 PRK03113 putative disulfide ox 40.9 95 0.0021 25.7 6.1 45 30-78 12-56 (139)
272 KOG1672 ATP binding protein [P 40.3 26 0.00056 31.1 2.7 63 149-217 88-157 (211)
273 PRK10853 putative reductase; P 40.3 45 0.00098 26.5 3.9 51 149-201 2-52 (118)
274 PRK01103 formamidopyrimidine/5 40.2 5.3 0.00011 36.2 -1.6 11 153-163 264-274 (274)
275 cd03025 DsbA_FrnE_like DsbA fa 39.2 22 0.00047 29.2 2.1 17 192-208 159-175 (193)
276 cd02967 mauD Methylamine utili 39.2 32 0.0007 25.6 2.8 24 193-216 86-113 (114)
277 COG3529 Predicted nucleic-acid 38.1 20 0.00042 26.1 1.3 24 156-182 12-37 (66)
278 PRK14811 formamidopyrimidine-D 37.4 4.6 0.0001 36.6 -2.4 15 152-166 253-267 (269)
279 COG0266 Nei Formamidopyrimidin 36.6 8.2 0.00018 35.6 -1.0 9 153-161 264-272 (273)
280 cd03039 GST_N_Sigma_like GST_N 35.7 92 0.002 21.4 4.6 59 150-213 2-60 (72)
281 cd03072 PDI_b'_ERp44 PDIb' fam 34.7 94 0.002 24.1 4.9 60 161-226 30-104 (111)
282 PF11287 DUF3088: Protein of u 33.5 64 0.0014 26.0 3.8 45 157-208 24-74 (112)
283 KOG3029 Glutathione S-transfer 32.9 1.7E+02 0.0038 27.7 7.0 66 136-211 76-145 (370)
284 cd03050 GST_N_Theta GST_N fami 31.7 1.8E+02 0.0038 20.1 6.4 60 150-212 2-61 (76)
285 PRK09437 bcp thioredoxin-depen 31.0 2.7E+02 0.0058 22.0 7.8 77 135-222 51-145 (154)
286 COG1495 DsbB Disulfide bond fo 30.9 3.3E+02 0.0071 23.0 8.3 24 44-71 31-54 (170)
287 COG2510 Predicted membrane pro 30.9 1.1E+02 0.0024 25.6 4.9 69 23-96 62-132 (140)
288 PRK02971 4-amino-4-deoxy-L-ara 30.5 2.9E+02 0.0063 22.2 8.1 66 35-101 53-120 (129)
289 cd03044 GST_N_EF1Bgamma GST_N 30.3 1.8E+02 0.0039 20.2 5.4 59 150-212 2-61 (75)
290 TIGR01616 nitro_assoc nitrogen 30.2 84 0.0018 25.3 4.1 21 149-169 3-23 (126)
291 PF06053 DUF929: Domain of unk 29.2 24 0.00052 32.1 0.8 19 146-164 59-77 (249)
292 PF05297 Herpes_LMP1: Herpesvi 29.1 18 0.0004 34.0 0.0 46 46-95 66-111 (381)
293 PRK13945 formamidopyrimidine-D 27.7 14 0.0003 33.7 -1.0 9 153-161 273-281 (282)
294 cd03080 GST_N_Metaxin_like GST 27.6 2.1E+02 0.0047 19.8 6.6 48 156-216 16-63 (75)
295 PF09526 DUF2387: Probable met 27.6 6.8 0.00015 29.0 -2.5 23 156-181 10-34 (71)
296 COG5546 Small integral membran 27.5 1.3E+02 0.0029 22.7 4.3 43 63-109 17-59 (80)
297 PRK10026 arsenate reductase; P 26.8 1.3E+02 0.0029 24.8 4.7 50 148-199 3-52 (141)
298 PF05673 DUF815: Protein of un 26.4 2.8E+02 0.006 25.4 7.1 86 138-226 44-131 (249)
299 PF02419 PsbL: PsbL protein; 26.0 1.3E+02 0.0029 19.6 3.5 25 23-47 12-36 (37)
300 TIGR00577 fpg formamidopyrimid 25.8 15 0.00033 33.3 -1.2 9 153-161 264-272 (272)
301 PF06703 SPC25: Microsomal sig 25.6 93 0.002 25.7 3.7 52 26-77 26-78 (162)
302 PRK15113 glutathione S-transfe 25.5 2.7E+02 0.0058 23.4 6.6 62 147-211 4-67 (214)
303 PRK14810 formamidopyrimidine-D 25.0 18 0.00039 32.8 -0.8 10 153-162 263-272 (272)
304 KOG2603 Oligosaccharyltransfer 25.0 1.1E+02 0.0025 28.9 4.4 76 147-228 62-164 (331)
305 COG3917 NahD 2-hydroxychromene 24.6 87 0.0019 27.6 3.3 33 192-224 166-198 (203)
306 PF11023 DUF2614: Protein of u 24.4 80 0.0017 25.6 2.9 14 157-170 72-85 (114)
307 PF11976 Rad60-SLD: Ubiquitin- 24.0 1.5E+02 0.0031 20.6 4.0 31 192-222 28-60 (72)
308 PF05961 Chordopox_A13L: Chord 23.6 73 0.0016 23.5 2.3 24 86-110 3-26 (68)
309 TIGR02652 conserved hypothetic 23.4 27 0.00058 29.5 -0.0 13 156-168 11-23 (163)
310 PF09925 DUF2157: Predicted me 23.3 1.3E+02 0.0028 24.3 4.1 7 42-48 45-51 (145)
311 PF09654 DUF2396: Protein of u 23.2 26 0.00057 29.5 -0.1 13 156-168 8-20 (161)
312 PRK10445 endonuclease VIII; Pr 23.0 20 0.00043 32.4 -0.9 9 153-161 254-262 (263)
313 COG0278 Glutaredoxin-related p 22.9 2.4E+02 0.0051 22.6 5.2 76 137-217 5-86 (105)
314 PRK00753 psbL photosystem II r 22.9 1.4E+02 0.003 19.7 3.2 29 18-47 9-38 (39)
315 PLN02378 glutathione S-transfe 22.7 2E+02 0.0044 24.3 5.3 51 155-211 18-68 (213)
316 PF14362 DUF4407: Domain of un 22.5 5.7E+02 0.012 23.0 9.0 29 35-66 24-52 (301)
317 PRK12660 putative monovalent c 22.1 4E+02 0.0087 21.1 7.0 17 86-102 70-87 (114)
318 TIGR02876 spore_yqfD sporulati 22.1 1.4E+02 0.0031 28.5 4.6 50 128-178 109-158 (382)
319 COG1393 ArsC Arsenate reductas 22.1 2E+02 0.0044 22.9 4.8 21 149-169 3-23 (117)
320 cd03047 GST_N_2 GST_N family, 21.3 2.8E+02 0.0061 18.9 5.9 60 150-212 2-61 (73)
321 PF02754 CCG: Cysteine-rich do 21.2 68 0.0015 22.2 1.7 27 136-163 57-83 (85)
322 PF05656 DUF805: Protein of un 20.9 3.8E+02 0.0083 20.4 7.7 14 75-88 63-76 (120)
323 PF07760 DUF1616: Protein of u 20.3 6.5E+02 0.014 22.8 9.0 32 22-54 52-84 (287)
No 1
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.60 E-value=2.8e-15 Score=114.00 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=59.4
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhh---cc--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCC
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAV---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 216 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~---~~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 216 (235)
.-+++|+|+||+||++++|.|.+.+. .+ +..|||+.+ +++|++++|++|||+.+ +|+ +|.|.
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~ 91 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD--------RMLCRSQGVNSYPSLYVFPSGMNPEKYYGD 91 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc--------HHHHHHcCCCccCEEEEEcCCCCcccCCCC
Confidence 34778999999999999999988552 22 346888753 47899999999999987 776 79999
Q ss_pred CChHHHHHHh
Q 026661 217 QDLSDLAKAS 226 (235)
Q Consensus 217 ~~le~L~~~s 226 (235)
++.++|.+|+
T Consensus 92 ~~~~~l~~f~ 101 (101)
T cd03003 92 RSKESLVKFA 101 (101)
T ss_pred CCHHHHHhhC
Confidence 9999998874
No 2
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.56 E-value=7.9e-15 Score=116.52 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=59.3
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhh---ccC--cEEEccCCCCCCchhhHHHh-HhcCCCccceeEE--CCE---Ee
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKAC-SDAKIEGFPTWVI--NGQ---VL 213 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~---~~l--~~Vec~~d~~n~~~k~~~lC-~~~~I~gyPTw~i--nG~---~y 213 (235)
+..-+++|+|+||+||+.++|.|.+.|. +.+ ..|||+.+ .++| ++++|++|||+.+ ||+ +|
T Consensus 29 ~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~--------~~l~~~~~~I~~~PTl~lf~~g~~~~~y 100 (113)
T cd03006 29 AEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP--------QGKCRKQKHFFYFPVIHLYYRSRGPIEY 100 (113)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--------hHHHHHhcCCcccCEEEEEECCccceEE
Confidence 3455789999999999999999998652 223 46788754 3789 5899999999888 776 89
Q ss_pred cCCCChHHHHHH
Q 026661 214 SGEQDLSDLAKA 225 (235)
Q Consensus 214 ~G~~~le~L~~~ 225 (235)
.|.++.++|..|
T Consensus 101 ~G~~~~~~i~~~ 112 (113)
T cd03006 101 KGPMRAPYMEKF 112 (113)
T ss_pred eCCCCHHHHHhh
Confidence 999999999886
No 3
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.55 E-value=2.1e-14 Score=110.57 Aligned_cols=79 Identities=22% Similarity=0.398 Sum_probs=61.3
Q ss_pred HHHhhccc--ceEEEecCCCHHHHHHHHHhhHHhhc---------cC--cEEEccCCCCCCchhhHHHhHhcCCCcccee
Q 026661 140 LAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEAVK---------QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTW 206 (235)
Q Consensus 140 la~~L~~~--gav~ygA~WCphC~~~k~~f~k~A~~---------~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw 206 (235)
+.+++++. -++.|+|+||+||++++|.|.+.+.. ++ ..|||+.+ .++|+++||++|||+
T Consensus 11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Ptl 82 (108)
T cd02996 11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--------SDIADRYRINKYPTL 82 (108)
T ss_pred HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--------HHHHHhCCCCcCCEE
Confidence 33444443 36789999999999999999875421 23 46788754 489999999999999
Q ss_pred EE--CCE----EecCCCChHHHHHHh
Q 026661 207 VI--NGQ----VLSGEQDLSDLAKAS 226 (235)
Q Consensus 207 ~i--nG~----~y~G~~~le~L~~~s 226 (235)
++ +|+ +|.|.++.++|.+|.
T Consensus 83 ~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 83 KLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEeCCcCcceecCCCCCHHHHHhhC
Confidence 87 775 689999999999873
No 4
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.54 E-value=3e-14 Score=108.49 Aligned_cols=72 Identities=18% Similarity=0.312 Sum_probs=58.2
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhhc---cC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CC-E---EecC
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VLSG 215 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~~---~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG-~---~y~G 215 (235)
.-+++|+|+||+||++++|.|.+.+.+ .+ ..|||+.+ .++|++++|++|||+++ +| + +|.|
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY--------ESLCQQANIRAYPTIRLYPGNASKYHSYNG 92 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch--------HHHHHHcCCCcccEEEEEcCCCCCceEccC
Confidence 457899999999999999999885432 23 45777643 58999999999999888 55 5 8999
Q ss_pred CCC-hHHHHHHh
Q 026661 216 EQD-LSDLAKAS 226 (235)
Q Consensus 216 ~~~-le~L~~~s 226 (235)
.++ .++|.+|.
T Consensus 93 ~~~~~~~l~~~i 104 (104)
T cd03004 93 WHRDADSILEFI 104 (104)
T ss_pred CCCCHHHHHhhC
Confidence 987 99998873
No 5
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.53 E-value=3.9e-14 Score=107.29 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=63.1
Q ss_pred HHHhhcccceEEEecCCCHHHHHHHHHhhHHhh--c--cC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE
Q 026661 140 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 211 (235)
Q Consensus 140 la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~--~--~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~ 211 (235)
+.+.++..-+++|+|+|||||++++|.|.+.+. + ++ ..|||+.+ .++|++++|+++||+++ +|+
T Consensus 11 f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 11 WTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE--------PGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred HHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC--------HhHHHHcCCcccCEEEEeCCCC
Confidence 344556667899999999999999999988542 1 23 45777643 47899999999999887 786
Q ss_pred --EecCCCChHHHHHHh
Q 026661 212 --VLSGEQDLSDLAKAS 226 (235)
Q Consensus 212 --~y~G~~~le~L~~~s 226 (235)
+|.|.++.++|.++.
T Consensus 83 ~~~~~G~~~~~~l~~~i 99 (101)
T cd02994 83 FRRYQGPRDKEDLISFI 99 (101)
T ss_pred EEEecCCCCHHHHHHHH
Confidence 799999999998875
No 6
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.51 E-value=6e-14 Score=108.18 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=62.5
Q ss_pred HHHHhhccc-ceEEEecCCCHHHHHHHHHhhHHh--hccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE--
Q 026661 139 SLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-- 211 (235)
Q Consensus 139 ~la~~L~~~-gav~ygA~WCphC~~~k~~f~k~A--~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~-- 211 (235)
.+...++.. -++.|+|+||+||+++.|.|.+.+ ..++.++.+|.+.+ .++++++++|++|||+++ +|+
T Consensus 11 ~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~-----~~~l~~~~~V~~~PT~~lf~~g~~~ 85 (100)
T cd02999 11 DLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI-----KPSLLSRYGVVGFPTILLFNSTPRV 85 (100)
T ss_pred HHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC-----CHHHHHhcCCeecCEEEEEcCCcee
Confidence 333344444 477999999999999999998854 23455555544311 358999999999999887 565
Q ss_pred EecCCCChHHHHHHh
Q 026661 212 VLSGEQDLSDLAKAS 226 (235)
Q Consensus 212 ~y~G~~~le~L~~~s 226 (235)
+|.|.++.++|.+|.
T Consensus 86 ~~~G~~~~~~l~~f~ 100 (100)
T cd02999 86 RYNGTRTLDSLAAFY 100 (100)
T ss_pred EecCCCCHHHHHhhC
Confidence 899999999998873
No 7
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.48 E-value=9.5e-14 Score=105.95 Aligned_cols=73 Identities=23% Similarity=0.439 Sum_probs=58.7
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhh---cc--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE--------E
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAV---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--------V 212 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~---~~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~--------~ 212 (235)
-+++|+|+||+||+++++.|.+.+. .+ +..|+|+.+. ..++|++++|+++||+.+ +|+ .
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~------~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~ 94 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK------NKPLCGKYGVQGFPTLKVFRPPKKASKHAVED 94 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc------cHHHHHHcCCCcCCEEEEEeCCCccccccccc
Confidence 5779999999999999999988542 22 3457887642 258999999999999888 442 6
Q ss_pred ecCCCChHHHHHHh
Q 026661 213 LSGEQDLSDLAKAS 226 (235)
Q Consensus 213 y~G~~~le~L~~~s 226 (235)
|.|.++.++|.+|.
T Consensus 95 ~~G~~~~~~l~~fi 108 (109)
T cd03002 95 YNGERSAKAIVDFV 108 (109)
T ss_pred ccCccCHHHHHHHh
Confidence 99999999999875
No 8
>PHA02278 thioredoxin-like protein
Probab=99.47 E-value=3.4e-13 Score=105.47 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=63.5
Q ss_pred HHHHHhhcccc--eEEEecCCCHHHHHHHHHhhHHhhc---c--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--
Q 026661 138 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 208 (235)
Q Consensus 138 ~~la~~L~~~g--av~ygA~WCphC~~~k~~f~k~A~~---~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-- 208 (235)
.+|.+++++.+ ++.|+|+||++|+.++|.+.+.+.+ + +..||++.+. +. ..+++++++|+++||+++
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~-~d---~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAED-VD---REKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccc-cc---cHHHHHHCCCccccEEEEEE
Confidence 45555655443 6789999999999999999885432 2 3345665432 11 257899999999999888
Q ss_pred CCE---EecCCCChHHHHHHh
Q 026661 209 NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 209 nG~---~y~G~~~le~L~~~s 226 (235)
||+ ++.|..+.++|.++-
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~~ 101 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQELE 101 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhhh
Confidence 888 789999999998863
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.47 E-value=3.7e-13 Score=100.46 Aligned_cols=73 Identities=22% Similarity=0.427 Sum_probs=60.1
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh--c-cCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecC
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 215 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~--~-~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G 215 (235)
+.-+++|+++||+||+.++|.|.+.+. . ++. .|||+.+ +++|++++|+++||+.+ +|+ +|.|
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g 89 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN--------KELCKKYGVKSVPTIIFFKNGKEVKRYNG 89 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS--------HHHHHHTTCSSSSEEEEEETTEEEEEEES
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc--------chhhhccCCCCCCEEEEEECCcEEEEEEC
Confidence 555889999999999999999988542 2 454 4666532 58999999999999888 786 8999
Q ss_pred CCChHHHHHHh
Q 026661 216 EQDLSDLAKAS 226 (235)
Q Consensus 216 ~~~le~L~~~s 226 (235)
.++.++|.+|.
T Consensus 90 ~~~~~~l~~~i 100 (103)
T PF00085_consen 90 PRNAESLIEFI 100 (103)
T ss_dssp SSSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999999874
No 10
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.7e-14 Score=135.81 Aligned_cols=74 Identities=24% Similarity=0.465 Sum_probs=62.7
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhh---c-----cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---K-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--- 211 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~---~-----~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~--- 211 (235)
++.-.++||||||+||+++.|.|.+.|. . .+..|||+.+ .++|.+++|+||||+.| ||+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--------~~~~~~y~v~gyPTlkiFrnG~~~~ 113 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--------SDLASKYEVRGYPTLKIFRNGRSAQ 113 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--------hhhHhhhcCCCCCeEEEEecCCcce
Confidence 3444678999999999999999998652 1 2568999865 38999999999999998 776
Q ss_pred EecCCCChHHHHHHh
Q 026661 212 VLSGEQDLSDLAKAS 226 (235)
Q Consensus 212 ~y~G~~~le~L~~~s 226 (235)
.|.|.|+.+.++.|.
T Consensus 114 ~Y~G~r~adgIv~wl 128 (493)
T KOG0190|consen 114 DYNGPREADGIVKWL 128 (493)
T ss_pred eccCcccHHHHHHHH
Confidence 799999999999986
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.45 E-value=4.8e-13 Score=100.21 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=58.3
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhh---ccC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCC
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 216 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~---~~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 216 (235)
.-++.|+|+||+||+.+++.+.+.+. ..+ ..|||+.+ .++|++++|+++||+++ +|+ ++.|.
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 85 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ--------PQIAQQFGVQALPTVYLFAAGQPVDGFQGA 85 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC--------HHHHHHcCCCCCCEEEEEeCCEEeeeecCC
Confidence 44789999999999999999987542 233 35666543 58999999999999888 886 69999
Q ss_pred CChHHHHHHh
Q 026661 217 QDLSDLAKAS 226 (235)
Q Consensus 217 ~~le~L~~~s 226 (235)
++.++|.++.
T Consensus 86 ~~~~~l~~~l 95 (96)
T cd02956 86 QPEEQLRQML 95 (96)
T ss_pred CCHHHHHHHh
Confidence 9999998875
No 12
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.44 E-value=2.6e-13 Score=101.93 Aligned_cols=71 Identities=25% Similarity=0.564 Sum_probs=57.1
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhh---c---cC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---Eec
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAV---K---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 214 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~---~---~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~ 214 (235)
-+++|+|+||+||++++|.|.+.+. . ++ ..|||+.+ .++|++++|+++||+.+ +|+ +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 90 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH--------RELCSEFQVRGYPTLLLFKDGEKVDKYK 90 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC--------hhhHhhcCCCcCCEEEEEeCCCeeeEee
Confidence 5678999999999999999987432 1 23 35677643 37899999999999887 775 799
Q ss_pred CCCChHHHHHHh
Q 026661 215 GEQDLSDLAKAS 226 (235)
Q Consensus 215 G~~~le~L~~~s 226 (235)
|.++.++|.+|.
T Consensus 91 G~~~~~~l~~~i 102 (102)
T cd03005 91 GTRDLDSLKEFV 102 (102)
T ss_pred CCCCHHHHHhhC
Confidence 999999998763
No 13
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.43 E-value=5.1e-13 Score=97.01 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=58.4
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhh---ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE-EecCCCChHHHH
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLA 223 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~---~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~-~y~G~~~le~L~ 223 (235)
.+.+|+++|||||+++++.+.+.+. .++.+++.|.+. .+++++++||+++||+++||+ ++.|.++.++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~------~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME------NPQKAMEYGIMAVPAIVINGDVEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc------CHHHHHHcCCccCCEEEECCEEEEecCCCHHHHH
Confidence 4678999999999999999987532 235555555432 247889999999999999988 899999999998
Q ss_pred HHh
Q 026661 224 KAS 226 (235)
Q Consensus 224 ~~s 226 (235)
++.
T Consensus 76 ~~l 78 (82)
T TIGR00411 76 EAI 78 (82)
T ss_pred HHH
Confidence 765
No 14
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.41 E-value=9.7e-13 Score=102.07 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=56.5
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh--c--cC--cEEEccCCCCCCchhhHHHhHh-cCCCccceeEE--CC----EE
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVI--NG----QV 212 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~--~--~l--~~Vec~~d~~n~~~k~~~lC~~-~~I~gyPTw~i--nG----~~ 212 (235)
..-+++|+|+|||||+++++.|.+.+. + .+ ..|+|+.+. .++|++ ++|++|||+++ +| ..
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~-------~~~~~~~~~v~~~Pti~~f~~~~~~~~~ 94 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ-------REFAKEELQLKSFPTILFFPKNSRQPIK 94 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc-------hhhHHhhcCCCcCCEEEEEcCCCCCcee
Confidence 456889999999999999999987542 2 23 457777531 367874 89999999887 43 27
Q ss_pred ecCC-CChHHHHHHh
Q 026661 213 LSGE-QDLSDLAKAS 226 (235)
Q Consensus 213 y~G~-~~le~L~~~s 226 (235)
|.|. |+.++|.+|.
T Consensus 95 y~g~~~~~~~l~~f~ 109 (109)
T cd02993 95 YPSEQRDVDSLLMFV 109 (109)
T ss_pred ccCCCCCHHHHHhhC
Confidence 9995 9999998873
No 15
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.39 E-value=1.8e-12 Score=97.59 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=57.5
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhh---ccC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE----EecC
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLSG 215 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~---~~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~----~y~G 215 (235)
.-+++|+|+||+||+++++.|.+.+. .++ ..+||+.+ .++|++++|+++||+.+ +|+ .|.|
T Consensus 20 ~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g 91 (103)
T cd03001 20 VWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH--------QSLAQQYGVRGFPTIKVFGAGKNSPQDYQG 91 (103)
T ss_pred cEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch--------HHHHHHCCCCccCEEEEECCCCcceeecCC
Confidence 35779999999999999999987542 234 45666542 47899999999999877 662 7999
Q ss_pred CCChHHHHHHh
Q 026661 216 EQDLSDLAKAS 226 (235)
Q Consensus 216 ~~~le~L~~~s 226 (235)
.++.++|.+|.
T Consensus 92 ~~~~~~l~~~~ 102 (103)
T cd03001 92 GRTAKAIVSAA 102 (103)
T ss_pred CCCHHHHHHHh
Confidence 99999999884
No 16
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.38 E-value=6e-12 Score=111.15 Aligned_cols=72 Identities=24% Similarity=0.388 Sum_probs=57.1
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh---ccCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecC
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 215 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~---~~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G 215 (235)
..-.++|||+|||||++++|.|.+.+. ..+. .|||+.+ .++|++++|++|||+++ +|+ .+.|
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~--------~~l~~~~~I~~~PTl~~f~~G~~v~~~~G 124 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA--------LNLAKRFAIKGYPTLLLFDKGKMYQYEGG 124 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc--------HHHHHHcCCCcCCEEEEEECCEEEEeeCC
Confidence 345789999999999999999988542 2233 4566532 58999999999999887 887 4568
Q ss_pred CCChHHHHHH
Q 026661 216 EQDLSDLAKA 225 (235)
Q Consensus 216 ~~~le~L~~~ 225 (235)
.++.++|.++
T Consensus 125 ~~s~e~L~~f 134 (224)
T PTZ00443 125 DRSTEKLAAF 134 (224)
T ss_pred CCCHHHHHHH
Confidence 8999999887
No 17
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.38 E-value=1.8e-12 Score=101.36 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=58.5
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh--c--cC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---Eec
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 214 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~--~--~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~ 214 (235)
..-+++|+|+||++|+.++|.|.+.+. . ++ ..|||+.+ +++|++++|+++||+++ +|+ ++.
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~--------~~l~~~~~V~~~Pt~~i~~~g~~~~~~~ 96 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE--------RRLARKLGAHSVPAIVGIINGQVTFYHD 96 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc--------HHHHHHcCCccCCEEEEEECCEEEEEec
Confidence 455789999999999999999987432 1 34 45666643 47899999999999887 887 678
Q ss_pred CCCChHHHHHHh
Q 026661 215 GEQDLSDLAKAS 226 (235)
Q Consensus 215 G~~~le~L~~~s 226 (235)
|.++.++|.++.
T Consensus 97 G~~~~~~l~~~i 108 (111)
T cd02963 97 SSFTKQHVVDFV 108 (111)
T ss_pred CCCCHHHHHHHH
Confidence 999999998875
No 18
>PHA02125 thioredoxin-like protein
Probab=99.37 E-value=2.5e-12 Score=94.10 Aligned_cols=69 Identities=26% Similarity=0.533 Sum_probs=54.5
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE---EecCC-CChHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ---VLSGE-QDLSDLAK 224 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~---~y~G~-~~le~L~~ 224 (235)
+++|+|+|||||+.+++.+.+.+ ..++++|.+. ..+++++++|+++||+. +|+ ++.|. +++.+|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---~~~~~vd~~~------~~~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---YTYVDVDTDE------GVELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---heEEeeeCCC------CHHHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHH
Confidence 57899999999999999997643 3456665443 25889999999999987 775 68885 66788888
Q ss_pred HhC
Q 026661 225 ASG 227 (235)
Q Consensus 225 ~sg 227 (235)
..|
T Consensus 72 ~~~ 74 (75)
T PHA02125 72 KLG 74 (75)
T ss_pred HhC
Confidence 766
No 19
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.36 E-value=2.3e-12 Score=103.39 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=62.0
Q ss_pred ccceEEEec--CCCH---HHHHHHHHhhHHhh-ccCcEEEccCCCCCCchhhHHHhHhcCCC--ccceeEE--CCE----
Q 026661 146 AIGAKMYGA--FWCS---HCLEQKQMFGSEAV-KQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--NGQ---- 211 (235)
Q Consensus 146 ~~gav~ygA--~WCp---hC~~~k~~f~k~A~-~~l~~Vec~~d~~n~~~k~~~lC~~~~I~--gyPTw~i--nG~---- 211 (235)
+.-.|+|+| |||+ ||+++.|.+.+.+. -.+..|||+..+. +...++|+++||+ ||||+++ ||+
T Consensus 19 ~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~---~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~ 95 (116)
T cd03007 19 KYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGE---KLNMELGERYKLDKESYPVIYLFHGGDFENP 95 (116)
T ss_pred CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccc---hhhHHHHHHhCCCcCCCCEEEEEeCCCcCCC
Confidence 334678999 9999 99999999987542 2357889964321 1246899999999 9999888 773
Q ss_pred -EecCC-CChHHHHHHhC
Q 026661 212 -VLSGE-QDLSDLAKASG 227 (235)
Q Consensus 212 -~y~G~-~~le~L~~~sg 227 (235)
.|+|. |+.++|++|..
T Consensus 96 ~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 96 VPYSGADVTVDALQRFLK 113 (116)
T ss_pred ccCCCCcccHHHHHHHHH
Confidence 69997 99999999864
No 20
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.36 E-value=4.4e-12 Score=97.72 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=60.6
Q ss_pred HHHHhhc----ccceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CC
Q 026661 139 SLAKHLH----AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 210 (235)
Q Consensus 139 ~la~~L~----~~gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG 210 (235)
++.++++ +.-++.|+|+||++|+.++|.+.+.+. .++.++.++.|. ++ +..+++++++|+++||+++ ||
T Consensus 5 ~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~-~~--~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 5 ELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDE-ND--STMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred HHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCC-Ch--HHHHHHHHcCCCcCCEEEEEeCC
Confidence 4444443 345779999999999999999988542 345555554442 21 1358999999999999887 88
Q ss_pred E---EecCCCChHHHHHHhCC
Q 026661 211 Q---VLSGEQDLSDLAKASGF 228 (235)
Q Consensus 211 ~---~y~G~~~le~L~~~sg~ 228 (235)
+ ++.|.. .++|.+..-|
T Consensus 82 ~~v~~~~G~~-~~~l~~~~~~ 101 (103)
T cd02985 82 EKIHEEEGIG-PDELIGDVLY 101 (103)
T ss_pred eEEEEEeCCC-HHHHHHHHHh
Confidence 7 788965 4677665443
No 21
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.34 E-value=4.7e-12 Score=95.20 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=58.0
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhh-----ccCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---Eec
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAV-----KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 214 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~-----~~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~ 214 (235)
.-++.|+|+|||+|+.+++.+.+.+. ..+. .+||+.+. ..++|++++|++|||+++ +|+ +|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 92 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE------HDALKEEYNVKGFPTFKYFENGKFVEKYE 92 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc------cHHHHHhCCCccccEEEEEeCCCeeEEeC
Confidence 45789999999999999999977431 2233 46776532 258899999999999877 676 799
Q ss_pred CCCChHHHHHHh
Q 026661 215 GEQDLSDLAKAS 226 (235)
Q Consensus 215 G~~~le~L~~~s 226 (235)
|.++.++|.+|.
T Consensus 93 g~~~~~~l~~~l 104 (104)
T cd02997 93 GERTAEDIIEFM 104 (104)
T ss_pred CCCCHHHHHhhC
Confidence 999999998873
No 22
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.33 E-value=2.9e-12 Score=98.15 Aligned_cols=73 Identities=16% Similarity=0.357 Sum_probs=57.6
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhhc----c--C--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE--Ee
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAVK----Q--L--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VL 213 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~~----~--l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~--~y 213 (235)
..-++.|+|+|||||++++|.|.+.+.+ . + ..++|+.+ .++|++++|+++||+++ +|. +|
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~I~~~Pt~~l~~~~~~~~~ 87 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY--------SSIASEFGVRGYPTIKLLKGDLAYNY 87 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC--------HhHHhhcCCccccEEEEEcCCCceee
Confidence 4457799999999999999999875421 1 3 34677642 47899999999999888 443 79
Q ss_pred cCCCChHHHHHHh
Q 026661 214 SGEQDLSDLAKAS 226 (235)
Q Consensus 214 ~G~~~le~L~~~s 226 (235)
.|.++.++|.++.
T Consensus 88 ~G~~~~~~l~~~~ 100 (104)
T cd03000 88 RGPRTKDDIVEFA 100 (104)
T ss_pred cCCCCHHHHHHHH
Confidence 9999999998875
No 23
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.33 E-value=3.6e-12 Score=95.59 Aligned_cols=73 Identities=25% Similarity=0.365 Sum_probs=57.0
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhh--c---cCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEE--CC-E---Ee
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAV--K---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VL 213 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~--~---~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG-~---~y 213 (235)
.-+++|+|+||+||+++++.|.+.+. + ++. .+||+.+ ..++|++++|+++||+++ +| + .|
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-------NKDLAKKYGVSGFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-------chhhHHhCCCCCcCEEEEEeCCCCCcccc
Confidence 45779999999999999999987542 1 243 4566541 148999999999999988 44 3 79
Q ss_pred cCCCChHHHHHHh
Q 026661 214 SGEQDLSDLAKAS 226 (235)
Q Consensus 214 ~G~~~le~L~~~s 226 (235)
.|.++.++|.+|.
T Consensus 93 ~g~~~~~~l~~~i 105 (105)
T cd02998 93 EGGRDLEDLVKFV 105 (105)
T ss_pred CCccCHHHHHhhC
Confidence 9999999998873
No 24
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.32 E-value=5.1e-12 Score=94.79 Aligned_cols=72 Identities=25% Similarity=0.447 Sum_probs=56.5
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh--c---cC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE-----
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----- 211 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~--~---~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~----- 211 (235)
+.-+++|+|+||+||+.+.+.|.+.+. + ++ ..|||+.+ +.+.+++++++||+.+ +|+
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~~Pt~~~~~~~~~~~~~ 89 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---------DVPSEFVVDGFPTILFFPAGDKSNPI 89 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---------hhhhhccCCCCCEEEEEcCCCcCCce
Confidence 345789999999999999999988542 1 23 35777642 4678899999999888 553
Q ss_pred EecCCCChHHHHHHh
Q 026661 212 VLSGEQDLSDLAKAS 226 (235)
Q Consensus 212 ~y~G~~~le~L~~~s 226 (235)
+|.|.++.++|.+|.
T Consensus 90 ~~~g~~~~~~l~~fi 104 (104)
T cd02995 90 KYEGDRTLEDLIKFI 104 (104)
T ss_pred EccCCcCHHHHHhhC
Confidence 799999999998873
No 25
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.30 E-value=1.5e-11 Score=94.45 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=55.8
Q ss_pred HHHHhhccc--ceEEEecCCCHHHHHHHHHhhHHh--hc--cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CC
Q 026661 139 SLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEA--VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 210 (235)
Q Consensus 139 ~la~~L~~~--gav~ygA~WCphC~~~k~~f~k~A--~~--~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG 210 (235)
.+.+++++. -++.|+|+|||||+.+.|.|.+.+ +. .+.++..+.| + .+++++++|+++||+++ ||
T Consensus 9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~-----~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--T-----IDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--C-----HHHHHHcCCCcCcEEEEEECC
Confidence 344444443 367999999999999999998743 22 2333333333 1 36789999999999888 88
Q ss_pred E---EecCCCChHHHHHHh
Q 026661 211 Q---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 211 ~---~y~G~~~le~L~~~s 226 (235)
+ +..|. +.++|.++.
T Consensus 82 ~~~~~~~G~-~~~~~~~~i 99 (102)
T cd02948 82 ELVAVIRGA-NAPLLNKTI 99 (102)
T ss_pred EEEEEEecC-ChHHHHHHH
Confidence 7 67775 777777654
No 26
>PTZ00102 disulphide isomerase; Provisional
Probab=99.30 E-value=1.4e-11 Score=116.25 Aligned_cols=74 Identities=20% Similarity=0.372 Sum_probs=59.8
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh------cc--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE--Ee
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV------KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VL 213 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~------~~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~--~y 213 (235)
+.-+++|+|+||+||++++|.|.+.+. .+ +..|||+.+ .++|++++|++|||+++ +|+ +|
T Consensus 50 ~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~y 121 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE--------MELAQEFGVRGYPTIKFFNKGNPVNY 121 (477)
T ss_pred CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC--------HHHHHhcCCCcccEEEEEECCceEEe
Confidence 456789999999999999999987541 12 345788754 48999999999999887 665 79
Q ss_pred cCCCChHHHHHHhC
Q 026661 214 SGEQDLSDLAKASG 227 (235)
Q Consensus 214 ~G~~~le~L~~~sg 227 (235)
.|.++.++|.+|..
T Consensus 122 ~g~~~~~~l~~~l~ 135 (477)
T PTZ00102 122 SGGRTADGIVSWIK 135 (477)
T ss_pred cCCCCHHHHHHHHH
Confidence 99999999998864
No 27
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.28 E-value=1.3e-11 Score=97.33 Aligned_cols=72 Identities=24% Similarity=0.458 Sum_probs=54.2
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhh--c----cC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--C-------
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAV--K----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N------- 209 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~--~----~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--n------- 209 (235)
.-+++|+|+||++|+.+++.|.+.+. + .+ ..|+|+.+. ..++|++++|++|||+++ +
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~------~~~~~~~~~i~~~Pt~~lf~~~~~~~~~ 94 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE------NVALCRDFGVTGYPTLRYFPPFSKEATD 94 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh------hHHHHHhCCCCCCCEEEEECCCCccCCC
Confidence 45778999999999999999988542 1 23 457886542 258899999999999988 3
Q ss_pred CEEecCC-CChHHHHH
Q 026661 210 GQVLSGE-QDLSDLAK 224 (235)
Q Consensus 210 G~~y~G~-~~le~L~~ 224 (235)
|.+|.|. |..+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 95 GLKQEGPERDVNELRE 110 (114)
T ss_pred CCcccCCccCHHHHHH
Confidence 3467776 77777654
No 28
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.27 E-value=1.1e-11 Score=99.30 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=50.0
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhhc---cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCCC
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 217 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~~---~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~~ 217 (235)
.-++.|+|+|||+|+.++|.+.+.+.+ .+.++.+|.|. .++++++++|+++||+.+ ||+ +..|.-
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~------~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~ 88 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE------VPDFNKMYELYDPPTVMFFFRNKHMKIDLGTG 88 (114)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC------CHHHHHHcCCCCCCEEEEEECCEEEEEEcCCC
Confidence 457789999999999999999986532 34556666553 258999999999999888 887 444543
No 29
>PRK09381 trxA thioredoxin; Provisional
Probab=99.26 E-value=4e-11 Score=92.08 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=58.7
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhh---cc--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---Eec
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 214 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~---~~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~ 214 (235)
...-+++|+++|||+|+.++|.|.+.+. .+ +..|+|+.+ .+++++++|+++||+++ +|+ ++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~ 92 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKV 92 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC--------hhHHHhCCCCcCCEEEEEeCCeEEEEec
Confidence 3445779999999999999999987542 22 346777643 36789999999999988 887 688
Q ss_pred CCCChHHHHHHh
Q 026661 215 GEQDLSDLAKAS 226 (235)
Q Consensus 215 G~~~le~L~~~s 226 (235)
|..+.++|.++.
T Consensus 93 G~~~~~~l~~~i 104 (109)
T PRK09381 93 GALSKGQLKEFL 104 (109)
T ss_pred CCCCHHHHHHHH
Confidence 999999998764
No 30
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.25 E-value=2.3e-11 Score=95.83 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=60.2
Q ss_pred HHHhhcccc--eEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE--
Q 026661 140 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-- 211 (235)
Q Consensus 140 la~~L~~~g--av~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~-- 211 (235)
+.++++... +++|+|+|||+|+.+++++.+.+. .++.++.+|.|. .+++.++++|+++||+.+ ||+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~------~~~l~~~~~v~~vPt~~i~~~g~~~ 88 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE------DKEKAEKYGVERVPTTIFLQDGGKD 88 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc------CHHHHHHcCCCcCCEEEEEeCCeec
Confidence 667676554 456789999999999999988542 345555555442 258899999999999998 332
Q ss_pred ---EecCCCChHHHHHHh
Q 026661 212 ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 212 ---~y~G~~~le~L~~~s 226 (235)
++.|..+.+++.++.
T Consensus 89 ~~~~~~G~~~~~el~~~i 106 (113)
T cd02975 89 GGIRYYGLPAGYEFASLI 106 (113)
T ss_pred ceEEEEecCchHHHHHHH
Confidence 688988888887764
No 31
>PRK10996 thioredoxin 2; Provisional
Probab=99.24 E-value=6e-11 Score=96.59 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=59.5
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh---ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCCC
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 217 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~---~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~~ 217 (235)
+.-++.|+|+||++|+.+.+.|.+.+. .++.++..|.+. .++++++++|+++||+++ ||+ ++.|..
T Consensus 53 k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~------~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~ 126 (139)
T PRK10996 53 LPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA------ERELSARFRIRSIPTIMIFKNGQVVDMLNGAV 126 (139)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC------CHHHHHhcCCCccCEEEEEECCEEEEEEcCCC
Confidence 344778999999999999999987432 345565555442 258899999999999888 888 689999
Q ss_pred ChHHHHHHh
Q 026661 218 DLSDLAKAS 226 (235)
Q Consensus 218 ~le~L~~~s 226 (235)
+.++|.++.
T Consensus 127 ~~e~l~~~l 135 (139)
T PRK10996 127 PKAPFDSWL 135 (139)
T ss_pred CHHHHHHHH
Confidence 999998875
No 32
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.24 E-value=4.5e-11 Score=83.83 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=55.3
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHHHHh
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 226 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~s 226 (235)
+++|+++|||+|+++++.+.+. .+.|.+++.+. ++ ....++++.+++.++||++++|+.+.|. +.++|.++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~-~~-~~~~~~~~~~~~~~vP~~~~~~~~~~g~-~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---GIAFEEIDVEK-DS-AAREEVLKVLGQRGVPVIVIGHKIIVGF-DPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---CCeEEEEeccC-CH-HHHHHHHHHhCCCcccEEEECCEEEeeC-CHHHHHHHh
Confidence 5789999999999999999763 46665555432 21 1134577889999999999999998885 678888775
No 33
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.24 E-value=4e-11 Score=91.48 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=56.0
Q ss_pred ccceEEEecCCCHHHHHHHHHhh---HHh--hc-cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE-C---CE---E
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFG---SEA--VK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-N---GQ---V 212 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~---k~A--~~-~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-n---G~---~ 212 (235)
+.-+++|+|+||++|+++++.+. +.+ .. ++.++..|.+. ++ ....+++++++|+++||+++ + |+ +
T Consensus 12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~-~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTK-ND-PEITALLKRFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCC-CC-HHHHHHHHHcCCCCCCEEEEECCCCCCCCcc
Confidence 34477999999999999998762 211 22 55554444332 11 11368899999999999888 3 55 7
Q ss_pred ecCCCChHHHHHHh
Q 026661 213 LSGEQDLSDLAKAS 226 (235)
Q Consensus 213 y~G~~~le~L~~~s 226 (235)
+.|.++.++|.++.
T Consensus 90 ~~G~~~~~~l~~~l 103 (104)
T cd02953 90 LPGFLTADEFLEAL 103 (104)
T ss_pred cccccCHHHHHHHh
Confidence 89999999998764
No 34
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.23 E-value=3.2e-11 Score=98.77 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=59.9
Q ss_pred HHhhcccceEEEecCCCHHHHHHHHHhhHHhh---ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE---CCE---
Q 026661 141 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ--- 211 (235)
Q Consensus 141 a~~L~~~gav~ygA~WCphC~~~k~~f~k~A~---~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i---nG~--- 211 (235)
+..-.+.-++.|+|+||++|+.+.|.|.+.+. .++.++.++.|. +. ..+++++++|+++||+++ ||+
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~-~~---~~~~~~~~~V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN-PK---WLPEIDRYRVDGIPHFVFLDREGNEEG 91 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC-cc---cHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 33334556789999999999999999987532 234444443332 11 357899999999999887 576
Q ss_pred EecCCCChHHHHHHhC
Q 026661 212 VLSGEQDLSDLAKASG 227 (235)
Q Consensus 212 ~y~G~~~le~L~~~sg 227 (235)
++.|..+.++|.++.-
T Consensus 92 ~~~G~~~~~~l~~~l~ 107 (142)
T cd02950 92 QSIGLQPKQVLAQNLD 107 (142)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 7899999888876654
No 35
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.23 E-value=5.5e-11 Score=90.11 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=59.6
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHh--h-ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCC
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 216 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A--~-~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 216 (235)
.+.-+++|+++||++|+.+++.+.+.+ . .++.+++.|.|. .+++.++++|+++||+.+ ||+ ++.|.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~------~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~ 86 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE------DQEIAEAAGIMGTPTVQFFKDKELVKEISGV 86 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC------CHHHHHHCCCeeccEEEEEECCeEEEEEeCC
Confidence 344577999999999999999997733 1 345555555543 257899999999999888 887 79999
Q ss_pred CChHHHHHHh
Q 026661 217 QDLSDLAKAS 226 (235)
Q Consensus 217 ~~le~L~~~s 226 (235)
++.++|.++.
T Consensus 87 ~~~~~~~~~l 96 (97)
T cd02949 87 KMKSEYREFI 96 (97)
T ss_pred ccHHHHHHhh
Confidence 9999998774
No 36
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.23 E-value=2e-11 Score=86.35 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=48.1
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE-EecC
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG 215 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~-~y~G 215 (235)
.+++|+++|||+|+++++.+.+.+. .++.+.+.|.+. .+++.+++||+++||+.+||+ .+.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~~~~g 66 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKVEFVG 66 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEEEEec
Confidence 4678999999999999999987432 346665555442 247889999999999999997 5655
No 37
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.22 E-value=6.9e-11 Score=84.68 Aligned_cols=73 Identities=16% Similarity=0.340 Sum_probs=58.7
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh--ccCcE--EEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCC
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 216 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~--~~l~~--Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 216 (235)
..-+++|+++||++|+++++.+.+.+. .++.+ ++|+.+ .+++++++++++||+++ +|+ .+.|.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 82 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN--------PELAEEYGVRSIPTFLFFKNGKEVDRVVGA 82 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC--------hhHHHhcCcccccEEEEEECCEEEEEEecC
Confidence 556889999999999999999988543 34554 555532 47899999999999988 776 79999
Q ss_pred CChHHHHHHh
Q 026661 217 QDLSDLAKAS 226 (235)
Q Consensus 217 ~~le~L~~~s 226 (235)
.+.++|.++.
T Consensus 83 ~~~~~l~~~i 92 (93)
T cd02947 83 DPKEELEEFL 92 (93)
T ss_pred CCHHHHHHHh
Confidence 9989998764
No 38
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.22 E-value=5.3e-11 Score=88.78 Aligned_cols=70 Identities=24% Similarity=0.433 Sum_probs=55.6
Q ss_pred eEEEecCCCHHHHHHHHHhhHHh--hc---cCcE--EEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEA--VK---QLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 216 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A--~~---~l~~--Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 216 (235)
+++|+++||++|+.+++.|.+.+ ++ ++.+ +||+. ..++|++++|+++||+.+ +|+ +|.|.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~ 88 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------EKDLASRFGVSGFPTIKFFPKGKKPVDYEGG 88 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------hHHHHHhCCCCcCCEEEEecCCCcceeecCC
Confidence 77999999999999999997743 22 3544 45543 258999999999999977 454 79999
Q ss_pred CChHHHHHHh
Q 026661 217 QDLSDLAKAS 226 (235)
Q Consensus 217 ~~le~L~~~s 226 (235)
++.++|.++.
T Consensus 89 ~~~~~l~~~i 98 (102)
T TIGR01126 89 RDLEAIVEFV 98 (102)
T ss_pred CCHHHHHHHH
Confidence 9999998875
No 39
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.22 E-value=2.9e-11 Score=97.33 Aligned_cols=82 Identities=9% Similarity=-0.001 Sum_probs=59.4
Q ss_pred HHHHhhccc---ceEEEecCCCH--HHH--HHHHHhhHHhhc-----cCcEEEccCCCCCCchhhHHHhHhcCCCcccee
Q 026661 139 SLAKHLHAI---GAKMYGAFWCS--HCL--EQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 206 (235)
Q Consensus 139 ~la~~L~~~---gav~ygA~WCp--hC~--~~k~~f~k~A~~-----~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw 206 (235)
.|.+.+++. -+++|+|+||+ ||+ .+.|.+.+.|.+ ++.++.+|.|. .+++|+++||+|+||+
T Consensus 18 nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~------~~~La~~~~I~~iPTl 91 (120)
T cd03065 18 NYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK------DAKVAKKLGLDEEDSI 91 (120)
T ss_pred hHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC------CHHHHHHcCCccccEE
Confidence 344444444 46688888884 699 777777664432 35544444442 2589999999999998
Q ss_pred EE--CCE--EecCCCChHHHHHHh
Q 026661 207 VI--NGQ--VLSGEQDLSDLAKAS 226 (235)
Q Consensus 207 ~i--nG~--~y~G~~~le~L~~~s 226 (235)
++ ||+ .|.|.++.++|.+|.
T Consensus 92 ~lfk~G~~v~~~G~~~~~~l~~~l 115 (120)
T cd03065 92 YVFKDDEVIEYDGEFAADTLVEFL 115 (120)
T ss_pred EEEECCEEEEeeCCCCHHHHHHHH
Confidence 88 997 799999999999875
No 40
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.21 E-value=7e-12 Score=115.34 Aligned_cols=71 Identities=15% Similarity=0.384 Sum_probs=57.1
Q ss_pred eEEEecCCCHHHHHHHHHhhHHh--hcc------CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE--EecCC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEA--VKQ------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGE 216 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A--~~~------l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~--~y~G~ 216 (235)
.+.||||||.|||++.|+|.+-- .+. +...||+. .+.++.++|||||||+.+ ||. .|.|.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~--------f~aiAnefgiqGYPTIk~~kgd~a~dYRG~ 118 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR--------FPAIANEFGIQGYPTIKFFKGDHAIDYRGG 118 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc--------chhhHhhhccCCCceEEEecCCeeeecCCC
Confidence 67899999999999999998721 222 23456653 578899999999999988 554 89999
Q ss_pred CChHHHHHHhC
Q 026661 217 QDLSDLAKASG 227 (235)
Q Consensus 217 ~~le~L~~~sg 227 (235)
|+.++|.++.-
T Consensus 119 R~Kd~iieFAh 129 (468)
T KOG4277|consen 119 REKDAIIEFAH 129 (468)
T ss_pred ccHHHHHHHHH
Confidence 99999998764
No 41
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.21 E-value=7.8e-11 Score=87.99 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=56.8
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhhc---cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCCC
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 217 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~~---~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~~ 217 (235)
+.-++.|+|+||++|+++++.+.+.+.+ ++.++.+|.+. ..+++++++|+++||+++ +|+ ++.|.
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~- 87 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE------LPEISEKFEITAVPTFVFFRNGTIVDRVSGA- 87 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc------CHHHHHhcCCccccEEEEEECCEEEEEEeCC-
Confidence 4457799999999999999999885533 46666666542 358999999999999888 887 56775
Q ss_pred ChHHHHHHh
Q 026661 218 DLSDLAKAS 226 (235)
Q Consensus 218 ~le~L~~~s 226 (235)
+.++|.++.
T Consensus 88 ~~~~l~~~~ 96 (97)
T cd02984 88 DPKELAKKV 96 (97)
T ss_pred CHHHHHHhh
Confidence 567777653
No 42
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.21 E-value=7.4e-11 Score=86.41 Aligned_cols=80 Identities=23% Similarity=0.456 Sum_probs=60.7
Q ss_pred HHHHhhccc--ceEEEecCCCHHHHHHHHHhhHHh--h---ccCcE--EEccCCCCCCchhhHHHhHhcCCCccceeEE-
Q 026661 139 SLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEA--V---KQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 208 (235)
Q Consensus 139 ~la~~L~~~--gav~ygA~WCphC~~~k~~f~k~A--~---~~l~~--Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i- 208 (235)
.+.+.+.+. -+++|+++||++|+.+.+.|.+.+ . .++.+ |+|+. ..++|++++|+++||+++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--------NNDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--------hHHHHHhCCCCCCCEEEEE
Confidence 444555554 578999999999999999998743 2 33444 55543 248999999999999887
Q ss_pred -CC-E---EecCCCChHHHHHHh
Q 026661 209 -NG-Q---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 209 -nG-~---~y~G~~~le~L~~~s 226 (235)
+| + +|.|.++.+++.+|.
T Consensus 79 ~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 79 PNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred cCCCcccccCCCCcCHHHHHhhC
Confidence 44 3 799999999998863
No 43
>PTZ00051 thioredoxin; Provisional
Probab=99.20 E-value=9.1e-11 Score=87.97 Aligned_cols=78 Identities=19% Similarity=0.402 Sum_probs=56.0
Q ss_pred HHHhhcc--cceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE--
Q 026661 140 LAKHLHA--IGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-- 211 (235)
Q Consensus 140 la~~L~~--~gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~-- 211 (235)
+.+.+++ .-++.|+|+||++|+.+++.|.+.+. .++.++..+.+. ..+++++++|+++||+.+ ||+
T Consensus 11 ~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~------~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 11 FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE------LSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc------hHHHHHHCCCceeeEEEEEeCCeEE
Confidence 4444444 44679999999999999999988543 235554444332 258899999999999887 887
Q ss_pred -EecCCCChHHHHH
Q 026661 212 -VLSGEQDLSDLAK 224 (235)
Q Consensus 212 -~y~G~~~le~L~~ 224 (235)
++.|. ..++|.+
T Consensus 85 ~~~~G~-~~~~~~~ 97 (98)
T PTZ00051 85 DTLLGA-NDEALKQ 97 (98)
T ss_pred EEEeCC-CHHHhhc
Confidence 68886 5577654
No 44
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.19 E-value=6.6e-11 Score=97.46 Aligned_cols=74 Identities=30% Similarity=0.410 Sum_probs=63.8
Q ss_pred hhHHHHHHHhhhcccccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHHhccc
Q 026661 2 FAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEF 80 (235)
Q Consensus 2 laY~~~~~la~~~~~~~~~~~~~~~~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~g~ 80 (235)
++|+.|+.+++.+..+ .+.+ ++.|+.++.++++|.+||.||+|++.+++ |+.|+||+.|+++++.+|++++.++
T Consensus 69 ~~y~~~~~l~~~~~~~---~~~~-~~~~~~l~~~~~~~~~~s~yl~y~~~~vi-~~~C~~C~~~~~~~~~lf~~~~~~~ 142 (142)
T smart00756 69 AAYLVVLALAVLGLLG---VTLP-RWTWRLLFLGSLAGAVFSVYLIYLLVFVI-KALCLYCILSAVVSISLFILVTIGR 142 (142)
T ss_pred HHHHHHHHHHHHHHcc---ccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 6788999888877322 2233 78899999999999999999999999998 9999999999999999999998653
No 45
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.18 E-value=1.3e-10 Score=86.11 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=57.0
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHh--h-ccCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCC
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 216 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A--~-~~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 216 (235)
.-+++|+++||++|+.+++.|.+.+ . .++. .|||+.+ .+++++++|+++||+++ +|+ ++.|.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 87 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN--------PDIAAKYGIRSIPTLLLFKNGKEVDRSVGA 87 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHHcCCCcCCEEEEEeCCcEeeeecCC
Confidence 4577899999999999999998743 2 2354 4555533 47899999999999888 776 68899
Q ss_pred CChHHHHHHh
Q 026661 217 QDLSDLAKAS 226 (235)
Q Consensus 217 ~~le~L~~~s 226 (235)
++.++|.++.
T Consensus 88 ~~~~~l~~~l 97 (101)
T TIGR01068 88 LPKAALKQLI 97 (101)
T ss_pred CCHHHHHHHH
Confidence 9999998875
No 46
>COG4243 Predicted membrane protein [Function unknown]
Probab=99.17 E-value=3.7e-11 Score=100.71 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=66.8
Q ss_pred hhHHHHHHHhhhcccccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHHhcccc
Q 026661 2 FAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFS 81 (235)
Q Consensus 2 laY~~~~~la~~~~~~~~~~~~~~~~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~g~~ 81 (235)
..|.+|.++++.+=.. .++ +++|+.++.+++.|++|+-||+|+..+++ |+.|+||..+++.++++|++...+++
T Consensus 76 a~Ft~~~i~all~~~~----~l~-~~~~~~l~v~~~~g~~f~~yLiY~e~~~~-~alC~YCtv~h~~~l~~~vl~~~~~~ 149 (156)
T COG4243 76 AYFTAVLIAALLGVAG----VLE-RWTWIGLLVGSLVGSAFVPYLIYLELFVI-GALCLYCTVAHLSILLLFVLATAGRR 149 (156)
T ss_pred HHHHHHHHHHHHHHHH----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888222 255 99999999999999999999999999997 99999999999999999999999987
Q ss_pred h
Q 026661 82 V 82 (235)
Q Consensus 82 ~ 82 (235)
|
T Consensus 150 ~ 150 (156)
T COG4243 150 W 150 (156)
T ss_pred h
Confidence 7
No 47
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.17 E-value=1.9e-10 Score=90.69 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=59.0
Q ss_pred HHHHhhc-ccceEEEecCCCHHHHHHHHHhhH------HhhccCcEEEccCCCCCC-------chhhHHHhHhcCCCccc
Q 026661 139 SLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGS------EAVKQLNYVECFPDGYRK-------GTKIAKACSDAKIEGFP 204 (235)
Q Consensus 139 ~la~~L~-~~gav~ygA~WCphC~~~k~~f~k------~A~~~l~~Vec~~d~~n~-------~~k~~~lC~~~~I~gyP 204 (235)
+-|+.=. +.-+++|+|+|||||+++++.+.+ ...+++..+.++.++..+ .....+++.+++|+++|
T Consensus 7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~P 86 (125)
T cd02951 7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTP 86 (125)
T ss_pred HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcccc
Confidence 3344333 446789999999999999987632 111345555555443100 01135889999999999
Q ss_pred eeEE---C-CE---EecCCCChHHHHHHh
Q 026661 205 TWVI---N-GQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 205 Tw~i---n-G~---~y~G~~~le~L~~~s 226 (235)
|+++ + |+ ++.|..+.+++.++.
T Consensus 87 t~~~~~~~gg~~~~~~~G~~~~~~~~~~l 115 (125)
T cd02951 87 TVIFLDPEGGKEIARLPGYLPPDEFLAYL 115 (125)
T ss_pred EEEEEcCCCCceeEEecCCCCHHHHHHHH
Confidence 9887 4 56 789999888887765
No 48
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.16 E-value=7.6e-11 Score=94.04 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=56.2
Q ss_pred ceEEEecCC--CHHHHHHHHHhhHHhh---ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCCC
Q 026661 148 GAKMYGAFW--CSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 217 (235)
Q Consensus 148 gav~ygA~W--CphC~~~k~~f~k~A~---~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~~ 217 (235)
-+++|+|.| ||+|++++|.|.+.+. +++.++.++.|. .++++.+++|+++||+++ ||+ ++.|.+
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~------~~~la~~f~V~sIPTli~fkdGk~v~~~~G~~ 103 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD------EQALAARFGVLRTPALLFFRDGRYVGVLAGIR 103 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC------CHHHHHHcCCCcCCEEEEEECCEEEEEEeCcc
Confidence 367999997 9999999999998653 234444444442 248999999999999888 998 789999
Q ss_pred ChHHHHH
Q 026661 218 DLSDLAK 224 (235)
Q Consensus 218 ~le~L~~ 224 (235)
+.++|.+
T Consensus 104 ~~~e~~~ 110 (111)
T cd02965 104 DWDEYVA 110 (111)
T ss_pred CHHHHhh
Confidence 9999864
No 49
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.16 E-value=8.4e-11 Score=113.60 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=58.5
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhhc----c--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE----E
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V 212 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~~----~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~----~ 212 (235)
.+.-+++|||||||||+.++|.|.+.|.+ . +..|+||.+. ....+++++|++|||+++ ||. .
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~------~~~~~~~~~I~~~PTii~Fk~g~~~~~~ 444 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ------KEFAKQELQLGSFPTILFFPKHSSRPIK 444 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc------cHHHHHHcCCCccceEEEEECCCCCcee
Confidence 34458899999999999999999886531 1 3457887552 123357899999999888 653 7
Q ss_pred ec-CCCChHHHHHHhC
Q 026661 213 LS-GEQDLSDLAKASG 227 (235)
Q Consensus 213 y~-G~~~le~L~~~sg 227 (235)
|. |.|+.+.|..|..
T Consensus 445 Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 445 YPSEKRDVDSLMSFVN 460 (463)
T ss_pred CCCCCCCHHHHHHHHH
Confidence 97 5899999998864
No 50
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.16 E-value=9.9e-11 Score=86.18 Aligned_cols=69 Identities=10% Similarity=0.207 Sum_probs=52.0
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhc---cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE-EecCC-CChHHHHH
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGE-QDLSDLAK 224 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~---~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~-~y~G~-~~le~L~~ 224 (235)
+.|+|+|||+|+.+++.+.+.+.+ ++.+++.+. .+.+.++||++.||+.+||+ .++|. .+.++|.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~ 73 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTD---------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIKE 73 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHHH
Confidence 456689999999999999885432 245566651 23477899999999999997 77886 45588888
Q ss_pred HhC
Q 026661 225 ASG 227 (235)
Q Consensus 225 ~sg 227 (235)
+.+
T Consensus 74 ~l~ 76 (76)
T TIGR00412 74 ILK 76 (76)
T ss_pred HhC
Confidence 764
No 51
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.15 E-value=1.2e-10 Score=88.67 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=63.4
Q ss_pred HHHHHhhccc-ceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE-Ee
Q 026661 138 LSLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VL 213 (235)
Q Consensus 138 ~~la~~L~~~-gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~-~y 213 (235)
++.++.|++. .+..|.++|||+|...++++.+.+. .++.+...|.+. .+++.+++||+++||+.+||+ .+
T Consensus 4 ~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~------~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 4 LEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL------FQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred HHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh------CHHHHHHcCCccCCEEEECCEEEE
Confidence 4455577776 6889999999999999999988543 356665555443 357899999999999999998 78
Q ss_pred cCCCChHHHHH
Q 026661 214 SGEQDLSDLAK 224 (235)
Q Consensus 214 ~G~~~le~L~~ 224 (235)
+|..+.+++..
T Consensus 78 ~G~~~~~e~~~ 88 (89)
T cd03026 78 FGRMTLEEILA 88 (89)
T ss_pred eCCCCHHHHhh
Confidence 89888888753
No 52
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.13 E-value=5.2e-10 Score=93.43 Aligned_cols=73 Identities=10% Similarity=0.213 Sum_probs=53.2
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhh--c--cCcEEEccCCCCCCchhhHHHhHhcCCCc------cceeEE--CCE---E
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAV--K--QLNYVECFPDGYRKGTKIAKACSDAKIEG------FPTWVI--NGQ---V 212 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~--~--~l~~Vec~~d~~n~~~k~~~lC~~~~I~g------yPTw~i--nG~---~ 212 (235)
-+++|+|+|||||+.++|.|.+.+. + ++.++.+|.|. .+++|++++|++ +||+++ ||+ +
T Consensus 50 vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~------~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 50 WLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR------FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC------CHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 3889999999999999999988542 1 35444443332 258899999988 999888 887 5
Q ss_pred ecC-----------CCChHHHHHHh
Q 026661 213 LSG-----------EQDLSDLAKAS 226 (235)
Q Consensus 213 y~G-----------~~~le~L~~~s 226 (235)
+.| .-+.|++.+..
T Consensus 124 ~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 124 RPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred EeccccCccccccccccHHHHHHhc
Confidence 664 45666666544
No 53
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.13 E-value=2e-10 Score=90.50 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=50.2
Q ss_pred HHHHhhcc--cceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE
Q 026661 139 SLAKHLHA--IGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 211 (235)
Q Consensus 139 ~la~~L~~--~gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~ 211 (235)
++.+.+++ .-++.|+|+||++|+.++|.+.+.+. .++.+++.|.+. ..++.++++|++.||+.+ ||+
T Consensus 14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~------~~~l~~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK------APFLVEKLNIKVLPTVILFKNGK 86 (113)
T ss_pred HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc------CHHHHHHCCCccCCEEEEEECCE
Confidence 34444443 34678999999999999999988542 346666666553 357899999999999888 887
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.12 E-value=1.9e-10 Score=107.13 Aligned_cols=74 Identities=23% Similarity=0.395 Sum_probs=58.4
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhh----c--cC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE----E
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAV----K--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V 212 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~----~--~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~----~ 212 (235)
.-+++|+|+||+||+++.|.|.+.+. . ++ ..|||+.+ .++|++++|++|||+.+ +|+ +
T Consensus 20 ~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~ 91 (462)
T TIGR01130 20 FVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--------KDLAQKYGVSGYPTLKIFRNGEDSVSD 91 (462)
T ss_pred CEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--------HHHHHhCCCccccEEEEEeCCccceeE
Confidence 34778999999999999999987432 1 13 35677643 48999999999999888 565 6
Q ss_pred ecCCCChHHHHHHhCC
Q 026661 213 LSGEQDLSDLAKASGF 228 (235)
Q Consensus 213 y~G~~~le~L~~~sg~ 228 (235)
|.|.++.++|.+|.--
T Consensus 92 ~~g~~~~~~l~~~i~~ 107 (462)
T TIGR01130 92 YNGPRDADGIVKYMKK 107 (462)
T ss_pred ecCCCCHHHHHHHHHH
Confidence 9999999999888743
No 55
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.12 E-value=3e-10 Score=91.05 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=59.6
Q ss_pred HHHHhhcc--cceEEEecCCCHHHHHHHHHhhHHhh-c--cCcEEEccCCCC---CCchhhHHHhHhc----CCCcccee
Q 026661 139 SLAKHLHA--IGAKMYGAFWCSHCLEQKQMFGSEAV-K--QLNYVECFPDGY---RKGTKIAKACSDA----KIEGFPTW 206 (235)
Q Consensus 139 ~la~~L~~--~gav~ygA~WCphC~~~k~~f~k~A~-~--~l~~Vec~~d~~---n~~~k~~~lC~~~----~I~gyPTw 206 (235)
+|.+.+++ ..+++||++|||+|+++.|.+.+.+. . .+-+|+.+.+.. .+..+..++.+++ +|++.||+
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 34444443 45889999999999999999988543 2 255777775421 1111234555664 46679998
Q ss_pred EE--CCE---EecC-CCChHHHHHHh
Q 026661 207 VI--NGQ---VLSG-EQDLSDLAKAS 226 (235)
Q Consensus 207 ~i--nG~---~y~G-~~~le~L~~~s 226 (235)
++ ||+ +..| ..+.++|.++.
T Consensus 95 v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 95 VHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 88 897 6777 45699998764
No 56
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.12 E-value=2.3e-10 Score=99.13 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=62.0
Q ss_pred HHHHHhhccc-ceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCEE
Q 026661 138 LSLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV 212 (235)
Q Consensus 138 ~~la~~L~~~-gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~~ 212 (235)
+++.+.+... .+++|+|+|||||+.+++.+.+.+. .++.++.+|.+. .+++++++||+++||+++ +|++
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~------~~~~~~~~~V~~vPtl~i~~~~~~ 198 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE------NPDLAEKYGVMSVPKIVINKGVEE 198 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC------CHHHHHHhCCccCCEEEEecCCEE
Confidence 3443344444 4556999999999999999987543 345555555543 258899999999999999 4556
Q ss_pred ecCCCChHHHHHHh
Q 026661 213 LSGEQDLSDLAKAS 226 (235)
Q Consensus 213 y~G~~~le~L~~~s 226 (235)
+.|..+.++|.++.
T Consensus 199 ~~G~~~~~~l~~~l 212 (215)
T TIGR02187 199 FVGAYPEEQFLEYI 212 (215)
T ss_pred EECCCCHHHHHHHH
Confidence 99999999998774
No 57
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.11 E-value=5.4e-09 Score=103.23 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=56.5
Q ss_pred cccceEEEecCCCHHHHHHHHH-hhHH----hhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE---CCE-----
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQM-FGSE----AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----- 211 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~-f~k~----A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i---nG~----- 211 (235)
.+.-+++|+|+||++|+++++. |.++ +.+++.++..|.+++++ +.++++++++|+++||..+ ||+
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~--~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~ 551 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNA--EDVALLKHYNVLGLPTILFFDAQGQEIPDA 551 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCCh--hhHHHHHHcCCCCCCEEEEECCCCCCcccc
Confidence 3456789999999999999885 4321 23445554444332121 2468899999999999888 575
Q ss_pred EecCCCChHHHHHHh
Q 026661 212 VLSGEQDLSDLAKAS 226 (235)
Q Consensus 212 ~y~G~~~le~L~~~s 226 (235)
++.|..+.+++.++.
T Consensus 552 r~~G~~~~~~f~~~L 566 (571)
T PRK00293 552 RVTGFMDAAAFAAHL 566 (571)
T ss_pred cccCCCCHHHHHHHH
Confidence 467999999988764
No 58
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.11 E-value=2e-10 Score=83.67 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=54.6
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhc-cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 224 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~-~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~ 224 (235)
+++|+++|||+|++.++++.+.... +..+++.+.+. ++......+-+..|++++|++++||+...|..++.++.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~-~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLS-NGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCC-ChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 4789999999999999999985421 26688887653 221111235556799999999999999988766666543
No 59
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.11 E-value=1.6e-10 Score=90.35 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=50.3
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCCCC
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 218 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~~~ 218 (235)
..-++.|+|+||++|+.++|.+.+.+. .++.++.+|.+. . +++++++|+++||+++ ||+ ++.|..+
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~------~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK------A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFEE 97 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh------h-HHHHhcCCCcCCEEEEEECCEEEEEEecHHH
Confidence 344678999999999999999988553 345566666542 3 7899999999999888 888 5666443
No 60
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.5e-10 Score=90.08 Aligned_cols=74 Identities=19% Similarity=0.386 Sum_probs=56.4
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCCC
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 217 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~~ 217 (235)
.+.-++.|+|+|||.|+.++|.|.+.+. .+..++.+|.|+ + .++|++++|+..||+.+ ||+ ++.|..
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~-----~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-L-----EEVAKEFNVKAMPTFVFYKGGEEVDEVVGAN 94 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-C-----HhHHHhcCceEeeEEEEEECCEEEEEEecCC
Confidence 3455778999999999999999999763 345566555554 3 58999999999999988 887 677774
Q ss_pred ChHHHHHH
Q 026661 218 DLSDLAKA 225 (235)
Q Consensus 218 ~le~L~~~ 225 (235)
.. +|.+.
T Consensus 95 ~~-~l~~~ 101 (106)
T KOG0907|consen 95 KA-ELEKK 101 (106)
T ss_pred HH-HHHHH
Confidence 43 65554
No 61
>PLN02309 5'-adenylylsulfate reductase
Probab=99.07 E-value=4.7e-10 Score=108.32 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=57.4
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhhc----cC--cEEEccCCCCCCchhhHHHhH-hcCCCccceeEE--CCE----
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QL--NYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI--NGQ---- 211 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~~----~l--~~Vec~~d~~n~~~k~~~lC~-~~~I~gyPTw~i--nG~---- 211 (235)
.+.-+++||||||+||+.+++.|.+.+.. .+ ..|||+.+ +.++|+ +++|++|||+++ +|.
T Consensus 365 ~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-------~~~la~~~~~I~~~PTil~f~~g~~~~v 437 (457)
T PLN02309 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-------QKEFAKQELQLGSFPTILLFPKNSSRPI 437 (457)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-------chHHHHhhCCCceeeEEEEEeCCCCCee
Confidence 44568899999999999999999886421 23 35666622 247786 599999999888 553
Q ss_pred EecC-CCChHHHHHHh
Q 026661 212 VLSG-EQDLSDLAKAS 226 (235)
Q Consensus 212 ~y~G-~~~le~L~~~s 226 (235)
+|.| .|+.+.|..|.
T Consensus 438 ~Y~~~~R~~~~L~~fv 453 (457)
T PLN02309 438 KYPSEKRDVDSLLSFV 453 (457)
T ss_pred ecCCCCcCHHHHHHHH
Confidence 7875 69999999886
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.07 E-value=4.1e-10 Score=97.57 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=59.5
Q ss_pred HHhhc-ccceEEEec---CCCHHHHHHHHHhhHHh--hccC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CC
Q 026661 141 AKHLH-AIGAKMYGA---FWCSHCLEQKQMFGSEA--VKQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 210 (235)
Q Consensus 141 a~~L~-~~gav~ygA---~WCphC~~~k~~f~k~A--~~~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG 210 (235)
.++++ ...+++|.+ +|||||+.++|.+.+.+ ..++ .++++|.|. .++++++++|+++||+.+ ||
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~------~~~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE------DKEEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc------cHHHHHHcCCCccCEEEEEeCC
Confidence 44444 445778888 99999999999998854 2333 467777543 358999999999999988 65
Q ss_pred E----EecCCCChHHHHHH
Q 026661 211 Q----VLSGEQDLSDLAKA 225 (235)
Q Consensus 211 ~----~y~G~~~le~L~~~ 225 (235)
+ ++.|..+.++|.++
T Consensus 88 ~~~~~~~~G~~~~~~l~~~ 106 (215)
T TIGR02187 88 KDGGIRYTGIPAGYEFAAL 106 (215)
T ss_pred eeeEEEEeecCCHHHHHHH
Confidence 4 68899888777554
No 63
>PTZ00102 disulphide isomerase; Provisional
Probab=99.06 E-value=4.1e-10 Score=106.37 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=59.3
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh--c---c--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CC-E---E
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---V 212 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~--~---~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG-~---~ 212 (235)
+.-+++|+|+||+||+.++|.|.+.+. . . +..+||+.+. ..|++++|+++||+.+ +| + +
T Consensus 376 k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~--------~~~~~~~v~~~Pt~~~~~~~~~~~~~ 447 (477)
T PTZ00102 376 KDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE--------TPLEEFSWSAFPTILFVKAGERTPIP 447 (477)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc--------cchhcCCCcccCeEEEEECCCcceeE
Confidence 345779999999999999999987542 1 1 3457776542 5688999999999887 44 3 6
Q ss_pred ecCCCChHHHHHHhCCCC
Q 026661 213 LSGEQDLSDLAKASGFPE 230 (235)
Q Consensus 213 y~G~~~le~L~~~sg~~g 230 (235)
|.|.++.++|.++..-..
T Consensus 448 ~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 448 YEGERTVEGFKEFVNKHA 465 (477)
T ss_pred ecCcCCHHHHHHHHHHcC
Confidence 999999999998875433
No 64
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4e-10 Score=103.12 Aligned_cols=87 Identities=20% Similarity=0.291 Sum_probs=70.0
Q ss_pred CChhHHHHHHhhcc-cceEEEecCCCHHHHHHHHHhhHHhh---c--cCcEEEccCCCCCCchhhHHHhHhcCCCcccee
Q 026661 133 SSPFALSLAKHLHA-IGAKMYGAFWCSHCLEQKQMFGSEAV---K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 206 (235)
Q Consensus 133 s~~~~~~la~~L~~-~gav~ygA~WCphC~~~k~~f~k~A~---~--~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw 206 (235)
+...+..+-+..++ ...|.||||||+||+.+.|.+.+.+. . ++.+|+||.+ +++..++||+++||.
T Consensus 30 ~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~--------p~vAaqfgiqsIPtV 101 (304)
T COG3118 30 EANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE--------PMVAAQFGVQSIPTV 101 (304)
T ss_pred HhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc--------hhHHHHhCcCcCCeE
Confidence 44466667777666 56789999999999999999998542 2 3678999864 588999999999997
Q ss_pred EE--CCE---EecCCCChHHHHHHhC
Q 026661 207 VI--NGQ---VLSGEQDLSDLAKASG 227 (235)
Q Consensus 207 ~i--nG~---~y~G~~~le~L~~~sg 227 (235)
+. +|+ -+.|.++.+.|.+|.-
T Consensus 102 ~af~dGqpVdgF~G~qPesqlr~~ld 127 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQLRQFLD 127 (304)
T ss_pred EEeeCCcCccccCCCCcHHHHHHHHH
Confidence 76 999 5888899889988753
No 65
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.2e-10 Score=92.98 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCChhHHHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhh---ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE
Q 026661 132 SSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 208 (235)
Q Consensus 132 ~s~~~~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~---~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i 208 (235)
.|...-.+....-....+|+|+|+||+.|+.+.|...+.+. .++.....|.|. ..++..+|+|+.+||.++
T Consensus 48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~------~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE------HPELAEDYEISAVPTVLV 121 (150)
T ss_pred cCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc------ccchHhhcceeeeeEEEE
Confidence 33334444455555666899999999999999999988543 345544444443 358999999999999887
Q ss_pred --CCE---EecCCCChHHHHHHh
Q 026661 209 --NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 209 --nG~---~y~G~~~le~L~~~s 226 (235)
||+ +..|..+.+.|..+.
T Consensus 122 fknGe~~d~~vG~~~~~~l~~~i 144 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKEQLRSLI 144 (150)
T ss_pred EECCEEeeeecccCCHHHHHHHH
Confidence 997 689999998887764
No 66
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.9e-10 Score=108.71 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=56.6
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhh--c---cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE---CCE----E
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--K---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----V 212 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~--~---~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i---nG~----~ 212 (235)
++-..+.||||||+||++++|.+.+.|. + ++-+-.+|..- |+ -...+|++|||+.+ +++ .
T Consensus 384 ~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTa-Nd-------~~~~~~~~fPTI~~~pag~k~~pv~ 455 (493)
T KOG0190|consen 384 GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATA-ND-------VPSLKVDGFPTILFFPAGHKSNPVI 455 (493)
T ss_pred ccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccc-cc-------CccccccccceEEEecCCCCCCCcc
Confidence 3334778999999999999999998652 2 23333444321 22 23467899999998 332 7
Q ss_pred ecCCCChHHHHHHhCCCCC
Q 026661 213 LSGEQDLSDLAKASGFPEM 231 (235)
Q Consensus 213 y~G~~~le~L~~~sg~~g~ 231 (235)
|.|.|++++|.+++-=.|.
T Consensus 456 y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 456 YNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cCCCcchHHHHhhhccCCC
Confidence 9999999999998876664
No 67
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8.5e-10 Score=103.19 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=65.0
Q ss_pred HHHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhh---ccC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--C
Q 026661 137 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 209 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~---~~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--n 209 (235)
...+..+-.+...++|+||||+||+++.+.|.+.+. .++ .-|||+.+ .++|++++|+||||+.+ +
T Consensus 39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~--------~~~~~~y~i~gfPtl~~f~~ 110 (383)
T KOG0191|consen 39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH--------KDLCEKYGIQGFPTLKVFRP 110 (383)
T ss_pred cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh--------HHHHHhcCCccCcEEEEEcC
Confidence 344555667788999999999999999999997532 223 45666543 58999999999999988 5
Q ss_pred C-E--EecCCCChHHHHHHhC
Q 026661 210 G-Q--VLSGEQDLSDLAKASG 227 (235)
Q Consensus 210 G-~--~y~G~~~le~L~~~sg 227 (235)
| + .|.|.++.+.++++.-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ 131 (383)
T KOG0191|consen 111 GKKPIDYSGPRNAESLAEFLI 131 (383)
T ss_pred CCceeeccCcccHHHHHHHHH
Confidence 5 2 7999999999988753
No 68
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.94 E-value=4.7e-09 Score=87.07 Aligned_cols=84 Identities=12% Similarity=0.134 Sum_probs=59.7
Q ss_pred HHHHHHhhc----ccceEEEecCCCHHHHHHHHHhhHHhh--cc-CcEEEccCCCCCCchhhHHHhHhcCCCccceeE-E
Q 026661 137 ALSLAKHLH----AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQ-LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-I 208 (235)
Q Consensus 137 ~~~la~~L~----~~gav~ygA~WCphC~~~k~~f~k~A~--~~-l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~-i 208 (235)
..++-+++. ..-++.|+|+|||+|+.+.|.+.+.|. .+ ..++.+|.|+ .++++++++|++.||.+ +
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe------~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE------VPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC------CHHHHHHcCccCCCcEEEE
Confidence 334555553 234678999999999999999998652 23 4446666664 35999999999887655 4
Q ss_pred --CCE----EecC--------CCChHHHHHHh
Q 026661 209 --NGQ----VLSG--------EQDLSDLAKAS 226 (235)
Q Consensus 209 --nG~----~y~G--------~~~le~L~~~s 226 (235)
||+ +.+| ..+.++|.+..
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i 116 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHH
Confidence 887 5777 57777877653
No 69
>PHA03050 glutaredoxin; Provisional
Probab=98.94 E-value=4e-09 Score=83.29 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=60.8
Q ss_pred HHHHhhcccceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCC
Q 026661 139 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 216 (235)
Q Consensus 139 ~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~ 216 (235)
.+-+.++++.+++|+.+|||+|++.|.++.+... ..+.++|.+.++.+.+ -+.++-+..|.+++|+++|||+...|.
T Consensus 5 ~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~-~~~~l~~~tG~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 5 FVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENE-LRDYFEQITGGRTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHH-HHHHHHHHcCCCCcCEEEECCEEEeCh
Confidence 4556677888999999999999999999987422 1355677775321211 123444457999999999999998888
Q ss_pred CChHHHH
Q 026661 217 QDLSDLA 223 (235)
Q Consensus 217 ~~le~L~ 223 (235)
.++.+|.
T Consensus 84 ddl~~l~ 90 (108)
T PHA03050 84 SDLLEID 90 (108)
T ss_pred HHHHHHH
Confidence 7776654
No 70
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1.1e-09 Score=107.29 Aligned_cols=70 Identities=26% Similarity=0.492 Sum_probs=54.5
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhhc--------cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE------C---
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI------N--- 209 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~~--------~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i------n--- 209 (235)
...|.|+++||+||++.+|.|.+.|.+ ++..|||..+. | ..+|++++|++|||+.. |
T Consensus 59 ~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N-----~~lCRef~V~~~Ptlryf~~~~~~~~~ 132 (606)
T KOG1731|consen 59 AKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-N-----VKLCREFSVSGYPTLRYFPPDSQNKTD 132 (606)
T ss_pred hHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-h-----hhhHhhcCCCCCceeeecCCccccCcC
Confidence 447789999999999999999986531 25689998653 5 37999999999999988 2
Q ss_pred CEEecCCCChHHH
Q 026661 210 GQVLSGEQDLSDL 222 (235)
Q Consensus 210 G~~y~G~~~le~L 222 (235)
|+.++|....+++
T Consensus 133 G~~~~~~~~~~ei 145 (606)
T KOG1731|consen 133 GSDVSGPVIPSEI 145 (606)
T ss_pred CCcccCCcchhhH
Confidence 6778885544333
No 71
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.92 E-value=3.6e-09 Score=82.00 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=58.3
Q ss_pred HhhcccceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchh-hHHHhHhcCCCccceeEECCEEecCCCChH
Q 026661 142 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTK-IAKACSDAKIEGFPTWVINGQVLSGEQDLS 220 (235)
Q Consensus 142 ~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k-~~~lC~~~~I~gyPTw~inG~~y~G~~~le 220 (235)
+.++++.+++|+.+|||+|++.|.++.+. .....++|++.+. .+.. +..+-+..|.+.+|.++|||+...|-.++.
T Consensus 3 ~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~-~i~~~~vdid~~~--~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~ 79 (99)
T TIGR02189 3 RMVSEKAVVIFSRSSCCMCHVVKRLLLTL-GVNPAVHEIDKEP--AGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVM 79 (99)
T ss_pred hhhccCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEEcCCCc--cHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHH
Confidence 45677889999999999999999999874 2345678887542 1111 123333468899999999999999987776
Q ss_pred HHH
Q 026661 221 DLA 223 (235)
Q Consensus 221 ~L~ 223 (235)
+|.
T Consensus 80 ~l~ 82 (99)
T TIGR02189 80 ALH 82 (99)
T ss_pred HHH
Confidence 664
No 72
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.91 E-value=3e-09 Score=81.53 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=50.5
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHH-h-----hccCcEEEccCCCCC--------------CchhhHHHhHhcCCCccce
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSE-A-----VKQLNYVECFPDGYR--------------KGTKIAKACSDAKIEGFPT 205 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~-A-----~~~l~~Vec~~d~~n--------------~~~k~~~lC~~~~I~gyPT 205 (235)
+.-+++|+++|||+|+++.+...+. + .+++..+..+.++.. .-....++.+++||+|+||
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt 85 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPT 85 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCE
Confidence 4457899999999999997776541 1 123444444333211 0112356888999999999
Q ss_pred eEE---CCE---EecCCCChHHHHHHh
Q 026661 206 WVI---NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 206 w~i---nG~---~y~G~~~le~L~~~s 226 (235)
+.+ +|+ ++.|..+.++|.++.
T Consensus 86 ~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 86 IVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp EEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred EEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999 477 789999999998763
No 73
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.87 E-value=8.3e-09 Score=83.09 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=55.4
Q ss_pred cceEEEec-------CCCHHHHHHHHHhhHHhh--c-cCcEEEccCCCCC-CchhhHHHhHhcCCC-ccceeEE--CCEE
Q 026661 147 IGAKMYGA-------FWCSHCLEQKQMFGSEAV--K-QLNYVECFPDGYR-KGTKIAKACSDAKIE-GFPTWVI--NGQV 212 (235)
Q Consensus 147 ~gav~ygA-------~WCphC~~~k~~f~k~A~--~-~l~~Vec~~d~~n-~~~k~~~lC~~~~I~-gyPTw~i--nG~~ 212 (235)
.-++.|+| +|||+|+.++|.+.+.+. . ++.++.|+.+... -..+..++.++++|+ ++||+++ +|++
T Consensus 23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQR 102 (119)
T ss_pred eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCce
Confidence 34778999 999999999999987532 2 5667777655310 000134778899999 9999988 7778
Q ss_pred ecCCC--ChHHHHHH
Q 026661 213 LSGEQ--DLSDLAKA 225 (235)
Q Consensus 213 y~G~~--~le~L~~~ 225 (235)
..|.. +.+.|..+
T Consensus 103 l~~~~c~~~~~~~~~ 117 (119)
T cd02952 103 LVEDECLQADLVEMF 117 (119)
T ss_pred ecchhhcCHHHHHHh
Confidence 77776 55555443
No 74
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.83 E-value=1.1e-08 Score=81.32 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=48.2
Q ss_pred hhHHHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhh---ccCcEEEccCCCCCCchhhHHHhHhcCCCc--cceeEE-
Q 026661 135 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI- 208 (235)
Q Consensus 135 ~~~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~---~~l~~Vec~~d~~n~~~k~~~lC~~~~I~g--yPTw~i- 208 (235)
..+++.|+.-.+.-++.|+|+||++|+.+++.+.+.+. .+..+|.++.|. ++ ...-+++++.| +||+++
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~-~~----~~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED-DE----EPKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC-CC----CchhhhcccCCCccceEEEE
Confidence 34556676666777889999999999999999877321 223454444332 11 12235788887 999888
Q ss_pred --CCE
Q 026661 209 --NGQ 211 (235)
Q Consensus 209 --nG~ 211 (235)
+|+
T Consensus 84 ~~~Gk 88 (117)
T cd02959 84 DPSGD 88 (117)
T ss_pred CCCCC
Confidence 565
No 75
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.81 E-value=1.4e-08 Score=73.74 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=54.4
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 224 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~ 224 (235)
+++|+++|||+|++.++++.+.. ....+++.+.+.... .-...+-+..|++++|++++||+...|..++.++.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELG-VKPAVVELDQHEDGS-EIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcC-CCcEEEEEeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 68999999999999999999853 356677877653111 001233345799999999999999888777776654
No 76
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.79 E-value=2.1e-08 Score=70.08 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=49.6
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 225 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~ 225 (235)
+++|+++|||+|+++++++.+. .-....++.+.+. . ...++.+..++.++|+++++|+.+.|.. .++|.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-~i~~~~~~i~~~~--~--~~~~~~~~~~~~~vP~i~~~~~~i~g~~-~~~l~~~ 72 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-GIPFEEVDVDEDP--E--ALEELKKLNGYRSVPVVVIGDEHLSGFR-PDKLRAL 72 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-CCCeEEEeCCCCH--H--HHHHHHHHcCCcccCEEEECCEEEecCC-HHHHHhh
Confidence 6899999999999999999763 1223345554331 1 1234444458999999999999888864 4677664
No 77
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.79 E-value=1.5e-08 Score=81.31 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=47.9
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh--cc-CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQ-LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 211 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~--~~-l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~ 211 (235)
+.-++.|+|+|||+|+.+.|.+.+.|. .+ ..+..+|.|+ .++++++++|+..||..+ ||+
T Consensus 15 klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe------v~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 15 KVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK------VPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred CEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc------cHHHHHhcCceeCcEEEEEECCc
Confidence 334678999999999999999999763 34 5566666664 469999999999999777 776
No 78
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=98.77 E-value=2.3e-08 Score=81.27 Aligned_cols=73 Identities=27% Similarity=0.429 Sum_probs=54.2
Q ss_pred hhHHHHHHHhhhcccccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHHhcc
Q 026661 2 FAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 79 (235)
Q Consensus 2 laY~~~~~la~~~~~~~~~~~~~~~~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~g 79 (235)
+.|..++++++.+.... +.. ++.|.+++..++.+.+++.||+|+..+++ |+.|+||+.++++++.++++++.|
T Consensus 65 ~~f~~~l~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~i-~~~C~~Cl~~~~i~~~l~~l~~~~ 137 (137)
T PF07884_consen 65 AFFAFLLLLALLGLARR---RLS-RWLWLLLFALSFIGLVFSLYLIYIQIFVI-KAWCPYCLVSYAINLALFILSLIR 137 (137)
T ss_dssp HHHHHHHHHHH-----T---T-S-TTHHHHHHHHHHHHHHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHhhcc---chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhcC
Confidence 46777777777652211 222 67889999999999999999999999997 999999999999999999999865
No 79
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.77 E-value=4.6e-09 Score=96.75 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=65.1
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhh---cc-------CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE-
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQ-------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ- 211 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~---~~-------l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~- 211 (235)
.+...+-|+|.||+-.+.++|+|.+.|. ++ ...|||+.+ .++..+|.|.-|||+++ ||+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e--------~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE--------DDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh--------hHHhhhhccccCceeeeeeccch
Confidence 5666788999999999999999998542 11 247899864 48999999999999998 996
Q ss_pred ---EecCCCChHHHHHHhCCCC
Q 026661 212 ---VLSGEQDLSDLAKASGFPE 230 (235)
Q Consensus 212 ---~y~G~~~le~L~~~sg~~g 230 (235)
.|.|.|+.+.|.++...|-
T Consensus 85 ~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 85 MKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhhccchhHHHHHHHHHHHh
Confidence 7999999999999886654
No 80
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.77 E-value=1.6e-08 Score=73.78 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=54.1
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 224 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~ 224 (235)
+++|+.+|||+|++.+.++.+. .-....+|++.+. . ...++-+..|..++|++++||+...|..++.++.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-~i~~~~~di~~~~---~-~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-GVTFTEIRVDGDP---A-LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-CCCcEEEEecCCH---H-HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence 4789999999999999999874 2345567776542 1 13445555789999999999999999888887764
No 81
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.77 E-value=2.3e-08 Score=74.44 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=52.5
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhc--CCCccceeEECCEEecCCCChHHHH
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDA--KIEGFPTWVINGQVLSGEQDLSDLA 223 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~--~I~gyPTw~inG~~y~G~~~le~L~ 223 (235)
.+++|+.+|||+|++.++++.+... ..++|.+.+.+. +. ....++-+.. +++++|++++||+...|..++.++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~-~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EG-ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCC-Ch-HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 4789999999999999999998432 356665554432 11 0122333333 4689999999999999887777765
Q ss_pred H
Q 026661 224 K 224 (235)
Q Consensus 224 ~ 224 (235)
+
T Consensus 80 ~ 80 (85)
T PRK11200 80 K 80 (85)
T ss_pred H
Confidence 4
No 82
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.77 E-value=2.9e-08 Score=70.87 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=46.4
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHh-Hh-cCCCccceeEE-CCEEecCCCChHHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKAC-SD-AKIEGFPTWVI-NGQVLSGEQDLSDLAKA 225 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC-~~-~~I~gyPTw~i-nG~~y~G~~~le~L~~~ 225 (235)
+++|+++|||+|++.++.+.+.. ..+..+|.+.+. . ..+.. +. .++.++|++++ ||+... .-+.++|++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-~~~~~idi~~~~--~---~~~~~~~~~~~~~~vP~i~~~~g~~l~-~~~~~~~~~~ 74 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-AAYEWVDIEEDE--G---AADRVVSVNNGNMTVPTVKFADGSFLT-NPSAAQVKAK 74 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-CceEEEeCcCCH--h---HHHHHHHHhCCCceeCEEEECCCeEec-CCCHHHHHHH
Confidence 57899999999999999998742 234567765442 1 11222 22 38999999988 565444 5555666543
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.75 E-value=2.8e-08 Score=78.05 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=54.0
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhhcc-CcEEEccCCCCCC-----------------chhhHHHhHhcC
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-LNYVECFPDGYRK-----------------GTKIAKACSDAK 199 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~~-l~~Vec~~d~~n~-----------------~~k~~~lC~~~~ 199 (235)
++++..-.+.-+++|+|+|||+|+++.+.+.+...+. +..|.++.++... -....+++++++
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG 97 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC
Confidence 4444443445678999999999999999987743222 3333332110000 000236788899
Q ss_pred CCccce-eEE--CCE---EecCCCChHHH
Q 026661 200 IEGFPT-WVI--NGQ---VLSGEQDLSDL 222 (235)
Q Consensus 200 I~gyPT-w~i--nG~---~y~G~~~le~L 222 (235)
|+++|+ +++ +|+ ++.|..+.++|
T Consensus 98 v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 98 VYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 999995 445 677 68899888765
No 84
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.73 E-value=2.8e-08 Score=73.33 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=50.8
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChH
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLS 220 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le 220 (235)
.+..+++|+.+|||+|++.|.++.+. .-....++++.+. + ..++-+..|.+++|.+++||+...|..++.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-gi~y~~idi~~~~--~---~~~~~~~~g~~~vP~i~i~g~~igG~~~l~ 75 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-GYDFEEIPLGNDA--R---GRSLRAVTGATTVPQVFIGGKLIGGSDELE 75 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-CCCcEEEECCCCh--H---HHHHHHHHCCCCcCeEEECCEEEcCHHHHH
Confidence 35568899999999999999999863 2223456665442 1 234555679999999999999888874443
No 85
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.71 E-value=4.6e-08 Score=67.85 Aligned_cols=68 Identities=21% Similarity=0.384 Sum_probs=50.2
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcE--EEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 223 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~--Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~ 223 (235)
+++|+++|||+|++.++++.+. .++| +|.+.+. . ...++-+..+...+|++++||+.+.|..++.+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~---~i~~~~~di~~~~---~-~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL---GIEFEEIDILEDG---E-LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---CCcEEEEECCCCH---H-HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 6799999999999999999974 2555 4554332 1 1344555678899999999999998886666553
No 86
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.71 E-value=2.7e-08 Score=84.55 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=46.6
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 211 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~ 211 (235)
.-++.|+|+|||+|+.+.|.+.+.|. ..+.++.++.+. . +++.+++|++.||+++ ||+
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~------~-~l~~~f~v~~vPTlllyk~G~ 146 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA------T-GASDEFDTDALPALLVYKGGE 146 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc------h-hhHHhCCCCCCCEEEEEECCE
Confidence 44678999999999999999998764 345666666552 2 6788999999999888 887
No 87
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.70 E-value=6.7e-08 Score=74.62 Aligned_cols=81 Identities=7% Similarity=0.093 Sum_probs=60.0
Q ss_pred HHHHhhcccceEEEec-----CCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEe
Q 026661 139 SLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 213 (235)
Q Consensus 139 ~la~~L~~~gav~ygA-----~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y 213 (235)
.+.+.++++.+++|.. +|||+|++.|.++.+. +++|.+.|.+. ++ ..+.++.+..|-+.+|.++|||+..
T Consensus 4 ~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---~i~~~~~di~~-~~-~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 4 RIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC---GVPFAYVNVLE-DP-EIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred HHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc---CCCEEEEECCC-CH-HHHHHHHHHhCCCCCCEEEECCEEE
Confidence 4567788888999964 9999999999999873 35554444332 22 1244555668889999999999999
Q ss_pred cCCCChHHHHH
Q 026661 214 SGEQDLSDLAK 224 (235)
Q Consensus 214 ~G~~~le~L~~ 224 (235)
.|..++.+|.+
T Consensus 79 GG~ddl~~l~~ 89 (97)
T TIGR00365 79 GGCDIIMEMYQ 89 (97)
T ss_pred eChHHHHHHHH
Confidence 99888777653
No 88
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6.9e-08 Score=72.23 Aligned_cols=74 Identities=20% Similarity=0.338 Sum_probs=55.0
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhc-CCCccceeEECCEEecCCCChHHHHHH
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQVLSGEQDLSDLAKA 225 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~-~I~gyPTw~inG~~y~G~~~le~L~~~ 225 (235)
.+.+|..+|||+|++.|.++.+ ..++|.+++.+. ++.+...+..++. |.+++|.++|||+...|..++++|.+.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~---~g~~~~~i~~~~-~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDR---KGVDYEEIDVDD-DEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHH---cCCCcEEEEecC-CcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 4679999999999999999986 345555544332 2212234555555 899999999999988888899988654
No 89
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.70 E-value=3e-08 Score=92.38 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=58.0
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhh---c---cC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---K---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--- 211 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~---~---~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~--- 211 (235)
...-+++|+|+||+||++++|.|.+.+. . ++ ..+||+.+ +... ++|+++||+.+ +|+
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n---------~~~~-~~i~~~Pt~~~~~~~~~~~ 433 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN---------DVPP-FEVEGFPTIKFVPAGKKSE 433 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC---------ccCC-CCccccCEEEEEeCCCCcC
Confidence 3445778999999999999999987441 2 33 35666543 2233 99999999988 442
Q ss_pred --EecCCCChHHHHHHhCCCCC
Q 026661 212 --VLSGEQDLSDLAKASGFPEM 231 (235)
Q Consensus 212 --~y~G~~~le~L~~~sg~~g~ 231 (235)
+|.|.++.++|.+|..-.++
T Consensus 434 ~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 434 PVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred ceEecCcCCHHHHHHHHHhcCC
Confidence 69999999999999877654
No 90
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.69 E-value=1.6e-07 Score=78.56 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=53.9
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCc-----------------hhhHHHhHhcCCCccce-e
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFPT-W 206 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~-----------------~k~~~lC~~~~I~gyPT-w 206 (235)
.+.-++.|+|+|||+|+++.|.+.+...+++.+|-++.++..+. .+..++.+++++.++|+ +
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~ 142 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETF 142 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEE
Confidence 34567789999999999999988765433344333332110000 00124567899999995 5
Q ss_pred EE--CCE---EecCCCChHHHHHHh
Q 026661 207 VI--NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 207 ~i--nG~---~y~G~~~le~L~~~s 226 (235)
+| ||+ ++.|..+.++|.++.
T Consensus 143 ~id~~G~i~~~~~G~~~~~~l~~~l 167 (173)
T TIGR00385 143 LVDGNGVILYRHAGPLNNEVWTEGF 167 (173)
T ss_pred EEcCCceEEEEEeccCCHHHHHHHH
Confidence 55 687 688999988887754
No 91
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.68 E-value=3.6e-07 Score=77.46 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=54.1
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCc-----------------hhhHHHhHhcCCCccce-e
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFPT-W 206 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~-----------------~k~~~lC~~~~I~gyPT-w 206 (235)
.+.-++.|+|+|||+|+++.|.+.+...+.+.+|-++.++.... .+..++.+++||.++|+ +
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~ 147 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETF 147 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEE
Confidence 34457789999999999999998775434454444432210000 00123566899999996 5
Q ss_pred EE--CCE---EecCCCChHHHHHHh
Q 026661 207 VI--NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 207 ~i--nG~---~y~G~~~le~L~~~s 226 (235)
+| ||+ ++.|..+.++|.++.
T Consensus 148 vid~~G~i~~~~~G~~~~~~l~~~i 172 (185)
T PRK15412 148 LIDGNGIIRYRHAGDLNPRVWESEI 172 (185)
T ss_pred EECCCceEEEEEecCCCHHHHHHHH
Confidence 55 676 789999888876653
No 92
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.67 E-value=9.9e-08 Score=68.41 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=51.7
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCC-ccceeEECCEEecCCCChHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE-GFPTWVINGQVLSGEQDLSDLAK 224 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~-gyPTw~inG~~y~G~~~le~L~~ 224 (235)
+++|+.+|||+|++.+.++.+. .-....++++.+. + ...++-+..|.+ ++|++++||+...|..++.+|.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-~i~~~~i~i~~~~-~---~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-GVDYEEIDVDGDP-A---LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-CCcEEEEECCCCH-H---HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 5799999999999999999873 1223345555431 1 123444556777 99999999999999888888764
No 93
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.65 E-value=7.3e-08 Score=72.44 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=51.8
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhc--cCcEEEccCCCCCCchhhHHHhHhcC--CCccceeEECCEEecCCCChHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQVLSGEQDLSDLAK 224 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~--~l~~Vec~~d~~n~~~k~~~lC~~~~--I~gyPTw~inG~~y~G~~~le~L~~ 224 (235)
+++|+.+|||+|++.|.++.+...+ .+.|.+.+.+.... ...++-+..| ++++|++++||+...|..++.++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~--~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGI--SKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHH--HHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 5799999999999999999875322 35565554432111 0233444445 4899999999999988888777754
No 94
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.65 E-value=8.9e-08 Score=77.44 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=50.5
Q ss_pred ChhHHHHHHhhcccceEEEecCCCHHHHHHHH-HhhHHh-----hccCcEEEccCCCCCCchhhHHHhH--------hcC
Q 026661 134 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA-----VKQLNYVECFPDGYRKGTKIAKACS--------DAK 199 (235)
Q Consensus 134 ~~~~~~la~~L~~~gav~ygA~WCphC~~~k~-~f~k~A-----~~~l~~Vec~~d~~n~~~k~~~lC~--------~~~ 199 (235)
++.+.+.|+.-.+.-.+.|+|.||+.||.+++ .|.+.. .+++..|..|.++ ++ ++.+ .+|
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~-~~-----~~~~~~~~~~~~~~~ 77 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE-RP-----DVDKIYMNAAQAMTG 77 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc-Cc-----HHHHHHHHHHHHhcC
Confidence 34566777777777788999999999999975 666521 2345567777654 22 3322 359
Q ss_pred CCccceeEE---CCE
Q 026661 200 IEGFPTWVI---NGQ 211 (235)
Q Consensus 200 I~gyPTw~i---nG~ 211 (235)
+.|+||+++ +|+
T Consensus 78 ~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 78 QGGWPLNVFLTPDLK 92 (124)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999988 676
No 95
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.64 E-value=2.1e-07 Score=76.28 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=59.6
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhHHh--h--ccCcE--EEccCCCCCC--------------chhhHHHhHh
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLNY--VECFPDGYRK--------------GTKIAKACSD 197 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A--~--~~l~~--Vec~~d~~n~--------------~~k~~~lC~~ 197 (235)
.++.+.-.+.-+++|+|+|||+|+...+.+.+.. + .++.. |+++.+...- .....+++++
T Consensus 54 ~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 133 (173)
T PRK03147 54 IELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDA 133 (173)
T ss_pred EeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 4566643445678899999999999988887743 1 12443 4544221000 0012477899
Q ss_pred cCCCccceeEE---CCE---EecCCCChHHHHHHh
Q 026661 198 AKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 198 ~~I~gyPTw~i---nG~---~y~G~~~le~L~~~s 226 (235)
+||+++|+.++ +|+ .+.|..+.++|.++.
T Consensus 134 ~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 134 YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 99999998665 687 679999999987764
No 96
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.63 E-value=1.2e-07 Score=85.89 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=59.4
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhhc-cCcE--EEccCCCCC---CchhhHHHhHhcCCCccceeEE---
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLNY--VECFPDGYR---KGTKIAKACSDAKIEGFPTWVI--- 208 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~-~l~~--Vec~~d~~n---~~~k~~~lC~~~~I~gyPTw~i--- 208 (235)
..+++.-.+.++++|+|+|||+|+.+.|.+.+.+.+ .+.. |+.|.+... .-.....+.+++||+++||+++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 455555566788899999999999999999875422 2443 444432100 0000135678999999999888
Q ss_pred CCE----EecCCCChHHHHHHh
Q 026661 209 NGQ----VLSGEQDLSDLAKAS 226 (235)
Q Consensus 209 nG~----~y~G~~~le~L~~~s 226 (235)
||+ ...|..+.++|.+..
T Consensus 239 ~~~~v~~v~~G~~s~~eL~~~i 260 (271)
T TIGR02740 239 DPNQFTPIGFGVMSADELVDRI 260 (271)
T ss_pred CCCEEEEEEeCCCCHHHHHHHH
Confidence 343 355889999987654
No 97
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.7e-08 Score=90.94 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=60.9
Q ss_pred HHhhcccceEEEecCCCHHHHHHHHHhhHHhh-----cc--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CC-
Q 026661 141 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV-----KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG- 210 (235)
Q Consensus 141 a~~L~~~gav~ygA~WCphC~~~k~~f~k~A~-----~~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG- 210 (235)
.+.-++.-.++|+||||+||+++++.|.+.+. .. +..++|+. ...+|.+++|++|||+++ +|
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~--------~~~~~~~~~v~~~Pt~~~f~~~~ 229 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV--------HKSLASRLEVRGYPTLKLFPPGE 229 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch--------HHHHhhhhcccCCceEEEecCCC
Confidence 44445556889999999999999999988652 22 23456652 358899999999999987 33
Q ss_pred ---EEecCCCChHHHHHHhC
Q 026661 211 ---QVLSGEQDLSDLAKASG 227 (235)
Q Consensus 211 ---~~y~G~~~le~L~~~sg 227 (235)
+.|+|.|+.+.+.+|.-
T Consensus 230 ~~~~~~~~~R~~~~i~~~v~ 249 (383)
T KOG0191|consen 230 EDIYYYSGLRDSDSIVSFVE 249 (383)
T ss_pred cccccccccccHHHHHHHHH
Confidence 46999999999998864
No 98
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.62 E-value=4.7e-08 Score=70.63 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=52.2
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 223 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~ 223 (235)
++.|+.+|||+|++.+.++.+. .-...++|++.+. ....++-+..+-..+|++++||+.+.|..++.+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-gi~~~~~di~~~~----~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-GLPYVEINIDIFP----ERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-CCceEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 5789999999999999999973 2234456665432 11345666678899999999999998887777664
No 99
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.61 E-value=1.3e-07 Score=71.22 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=56.5
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh---ccCcEEEccCCCCCCchhhHHHhHhcCCC--ccceeEE--C--CEE--ec
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--N--GQV--LS 214 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~---~~l~~Vec~~d~~n~~~k~~~lC~~~~I~--gyPTw~i--n--G~~--y~ 214 (235)
..-+++|+++||++|+++++.+.+.|. .++.++.+|.+. ..++++++||+ ++||+.+ + |++ +.
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~------~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~ 86 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD------FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP 86 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh------hHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence 456778999999999999999998663 346666555543 35789999999 9999888 4 653 33
Q ss_pred -CCCChHHHHHHh
Q 026661 215 -GEQDLSDLAKAS 226 (235)
Q Consensus 215 -G~~~le~L~~~s 226 (235)
|..+.++|.+|.
T Consensus 87 ~~~~~~~~l~~fi 99 (103)
T cd02982 87 EEELTAESLEEFV 99 (103)
T ss_pred ccccCHHHHHHHH
Confidence 334888888875
No 100
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.60 E-value=6.1e-08 Score=67.47 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=43.2
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEE
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 212 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~ 212 (235)
+++|+.+|||+|++.+.++.+. .-...++|.+.+. ....++-+..|.+++|++++||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-~i~y~~~dv~~~~----~~~~~l~~~~g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-GIPYEEVDVDEDE----EAREELKELSGVRTVPQVFIDGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TBEEEEEEGGGSH----HHHHHHHHHHSSSSSSEEEETTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-CCeeeEcccccch----hHHHHHHHHcCCCccCEEEECCEE
Confidence 4789999999999999999763 2234567776552 113444444599999999999974
No 101
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.59 E-value=8.4e-08 Score=72.71 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=58.5
Q ss_pred HhhcccceEEEec-----CCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCC
Q 026661 142 KHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 216 (235)
Q Consensus 142 ~~L~~~gav~ygA-----~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~ 216 (235)
+.+++..+++|.. ||||+|++.|.++.+. ......+|.+.|. ..+.++.+..|-+.+|.++|||+.+.|.
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-~i~y~~idv~~~~----~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL-GVDFGTFDILEDE----EVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-CCCeEEEEcCCCH----HHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 4567788999965 7999999999999874 2334456655432 1245556667999999999999999998
Q ss_pred CChHHHHH
Q 026661 217 QDLSDLAK 224 (235)
Q Consensus 217 ~~le~L~~ 224 (235)
.++.+|.+
T Consensus 78 ~~l~~l~~ 85 (90)
T cd03028 78 DIVKEMHE 85 (90)
T ss_pred HHHHHHHH
Confidence 88887754
No 102
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.57 E-value=1.9e-07 Score=67.48 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=50.1
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 225 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~ 225 (235)
+++|+.+|||+|++.+..+.+. .-.+..+|.+.|. +..+..++.|..++|++++||+..-|.-+.++|.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-~i~~~~~di~~~~-----~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-GIAFEEINIDEQP-----EAIDYVKAQGFRQVPVIVADGDLSWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCcccCEEEECCCcEEeccCHHHHHhc
Confidence 4689999999999999999863 2223446665432 123445567999999999988745555667887765
No 103
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.57 E-value=2.3e-07 Score=77.52 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=52.2
Q ss_pred hcccceEEEecCCCHHHHHHHHHhhHHhhc-cCc--EEEccCCCCC--Cch--hhHHHh-Hhc---CCCccceeEE---C
Q 026661 144 LHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYR--KGT--KIAKAC-SDA---KIEGFPTWVI---N 209 (235)
Q Consensus 144 L~~~gav~ygA~WCphC~~~k~~f~k~A~~-~l~--~Vec~~d~~n--~~~--k~~~lC-~~~---~I~gyPTw~i---n 209 (235)
+.+..++.|+|+|||+|++..|.+.+.+.+ ++. .|+.|.+... +.. ...+.. ..+ +|+++||.++ +
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 345569999999999999999999875422 233 3444432100 000 001222 234 8999999776 4
Q ss_pred CE----EecCCCChHHHHHH
Q 026661 210 GQ----VLSGEQDLSDLAKA 225 (235)
Q Consensus 210 G~----~y~G~~~le~L~~~ 225 (235)
|. ++.|..+.++|.+.
T Consensus 129 G~~i~~~~~G~~s~~~l~~~ 148 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANR 148 (153)
T ss_pred CCEEEEEeecccCHHHHHHH
Confidence 43 57899999988764
No 104
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.55 E-value=2.3e-07 Score=72.00 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=56.9
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCc-----------------hhhHHHhHhcCC
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKI 200 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~-----------------~k~~~lC~~~~I 200 (235)
.+++..-.+.-++.|+++|||+|+.+.+.+.+.+ ++++.+-...+..++. .+..+++++++|
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 91 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLA-ADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGV 91 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHH-hhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCC
Confidence 3444443456678899999999999999887642 3333222211100000 012368999999
Q ss_pred CccceeEE---CCE--EecCCCChHHHHHH
Q 026661 201 EGFPTWVI---NGQ--VLSGEQDLSDLAKA 225 (235)
Q Consensus 201 ~gyPTw~i---nG~--~y~G~~~le~L~~~ 225 (235)
.+.||..+ ||. ++.|..+.++|.+.
T Consensus 92 ~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 92 SVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 99999887 454 68899999999764
No 105
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.55 E-value=3.8e-07 Score=89.54 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=55.8
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh----ccCcEEEccCCC----CCC------------------chhhHHHhHhcC
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV----KQLNYVECFPDG----YRK------------------GTKIAKACSDAK 199 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~----~~l~~Vec~~d~----~n~------------------~~k~~~lC~~~~ 199 (235)
+.-++.|+|+|||+|+++.|.+.+.+. +++.+|-+..++ ++. -.+..++.++++
T Consensus 57 KpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fg 136 (521)
T PRK14018 57 KPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLN 136 (521)
T ss_pred CEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcC
Confidence 445789999999999999999987432 234333221100 000 000236788999
Q ss_pred CCccceeEE---CCE---EecCCCChHHHHHHhC
Q 026661 200 IEGFPTWVI---NGQ---VLSGEQDLSDLAKASG 227 (235)
Q Consensus 200 I~gyPTw~i---nG~---~y~G~~~le~L~~~sg 227 (235)
|+++||.++ ||+ ++.|..+.++|.++..
T Consensus 137 V~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 137 ISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred CCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 999999854 687 6899999999988765
No 106
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.55 E-value=2.2e-07 Score=66.81 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=48.9
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHHHH
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 225 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~ 225 (235)
.+++|+.+|||+|++.|.++.+. .-....+|++.+. . ...+-+..|.+.+|.+++||+...|. ++|.++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~-~i~~~~~~v~~~~--~---~~~~~~~~g~~~vP~ifi~g~~igg~---~~l~~~ 70 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN-GISYEEIPLGKDI--T---GRSLRAVTGAMTVPQVFIDGELIGGS---DDLEKY 70 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc-CCCcEEEECCCCh--h---HHHHHHHhCCCCcCeEEECCEEEeCH---HHHHHH
Confidence 46899999999999999999873 2233456665442 1 23333446999999999999988764 555544
No 107
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.53 E-value=2.1e-07 Score=80.39 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=47.6
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCC
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 216 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 216 (235)
-++.|||+||++|+.+.+.+.+.|. ..+.++.++.+ +...+++|++.||+++ ||+ ++.|.
T Consensus 105 VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad---------~~~~~~~i~~lPTlliyk~G~~v~~ivG~ 171 (192)
T cd02988 105 VVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST---------QCIPNYPDKNLPTILVYRNGDIVKQFIGL 171 (192)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH---------HhHhhCCCCCCCEEEEEECCEEEEEEeCc
Confidence 4678999999999999999999764 34667777754 2246899999999888 887 56664
No 108
>PRK14889 VKOR family protein; Provisional
Probab=98.53 E-value=3.3e-07 Score=75.94 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=52.0
Q ss_pred hhHHHHHHHhhhcccccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHHhc
Q 026661 2 FAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLK 78 (235)
Q Consensus 2 laY~~~~~la~~~~~~~~~~~~~~~~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~ 78 (235)
++|..+.++++.+... .+ ++-|......+....+||.||+|++.|++ |++|+||+.+++..+.++++.+.
T Consensus 70 ~~f~~~l~l~~~~~~~-~~-----~~~~~~~~~~~~~g~~~~~yL~y~~~fvi-~a~C~~C~~~~~~~~~~~~~~~~ 139 (143)
T PRK14889 70 AWFSANIALALLGVGT-LK-----RILGRVISLWSIIGLAIVPYLVYLEVFVL-GAICIYCTIAHVSILAAFILILI 139 (143)
T ss_pred HHHHHHHHHHHHHHcc-hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHH
Confidence 5788888888776322 22 22233333334455889999999999998 99999999999999999988764
No 109
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.52 E-value=3.7e-07 Score=67.02 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=47.8
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhc-cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE-EecC-CCChHHHHHH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG-EQDLSDLAKA 225 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~-~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~-~y~G-~~~le~L~~~ 225 (235)
++.| .++||+|..+.+.+.+.+.+ +++ +|+..-. + .+++ .++||++.||+.|||+ ++.| .-+.++|.++
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~-~ei~~~~-~----~~~~-~~ygv~~vPalvIng~~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIE-VEIIDIE-D----FEEI-EKYGVMSVPALVINGKVVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEE-EEEEETT-T----HHHH-HHTT-SSSSEEEETTEEEEESS--HHHHHHHH
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCe-EEEEEcc-C----HHHH-HHcCCCCCCEEEECCEEEEEecCCCHHHHHHH
Confidence 3454 67799999999999875321 222 2332111 1 3565 9999999999999999 8999 8888998876
Q ss_pred h
Q 026661 226 S 226 (235)
Q Consensus 226 s 226 (235)
.
T Consensus 75 l 75 (76)
T PF13192_consen 75 L 75 (76)
T ss_dssp H
T ss_pred h
Confidence 4
No 110
>PRK10638 glutaredoxin 3; Provisional
Probab=98.51 E-value=3.6e-07 Score=67.75 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=53.4
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHHH
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 224 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~ 224 (235)
.+++|+.+|||+|++.+.++.+. .-....+|++.+. . ...++-+..|...+|++++||+...|..++.+|.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~-gi~y~~~dv~~~~--~--~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSK-GVSFQEIPIDGDA--A--KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHc-CCCcEEEECCCCH--H--HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 57899999999999999999873 2233456665431 1 13455667899999999999999988876666654
No 111
>PTZ00062 glutaredoxin; Provisional
Probab=98.50 E-value=4.1e-07 Score=79.53 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=53.5
Q ss_pred HHHHHHhhcc---cceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--C
Q 026661 137 ALSLAKHLHA---IGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 209 (235)
Q Consensus 137 ~~~la~~L~~---~gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--n 209 (235)
..++.+..++ .-+.+|+|+|||+|+.+++.+.+.+. .++.++.++.| ++|.++||+++ |
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------------~~V~~vPtfv~~~~ 71 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------------DANNEYGVFEFYQN 71 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------------cCcccceEEEEEEC
Confidence 3455555552 23668889999999999999998653 45778887642 89999999888 8
Q ss_pred CE---EecCCCChHHHHH
Q 026661 210 GQ---VLSGEQDLSDLAK 224 (235)
Q Consensus 210 G~---~y~G~~~le~L~~ 224 (235)
|+ ++.|.. ..+|..
T Consensus 72 g~~i~r~~G~~-~~~~~~ 88 (204)
T PTZ00062 72 SQLINSLEGCN-TSTLVS 88 (204)
T ss_pred CEEEeeeeCCC-HHHHHH
Confidence 87 677764 555553
No 112
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.5e-07 Score=83.40 Aligned_cols=74 Identities=19% Similarity=0.352 Sum_probs=53.9
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhhcc--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE--
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-- 211 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~-- 211 (235)
.+|+..=.+.-+|.|+|.||++|++..|+|...+.+. -.+.++|.|+ .+..+..+||...||+++ ||+
T Consensus 14 ~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~------c~~taa~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 14 RELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE------CRGTAATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred HhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH------hhchhhhcCcccCceEEEEecCeEe
Confidence 3444444445578999999999999999999976443 2355555553 345667799999999888 997
Q ss_pred -EecCCC
Q 026661 212 -VLSGEQ 217 (235)
Q Consensus 212 -~y~G~~ 217 (235)
.++|..
T Consensus 88 d~~qGAd 94 (288)
T KOG0908|consen 88 DQIQGAD 94 (288)
T ss_pred eeecCCC
Confidence 577763
No 113
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.48 E-value=6.7e-07 Score=66.96 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=51.5
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhhccCcE--EEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCChHHHHHH
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 225 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~~~l~~--Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~ 225 (235)
.+++|+.+|||+|++.|..+.+ ..++| +|++.+. + ..+..++.|.+++|+++++|+...|- +.++|.++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~---~gI~~~~idi~~~~--~---~~~~~~~~g~~~vPvv~i~~~~~~Gf-~~~~l~~~ 72 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMES---RGFDFEMINVDRVP--E---AAETLRAQGFRQLPVVIAGDLSWSGF-RPDMINRL 72 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHH---CCCceEEEECCCCH--H---HHHHHHHcCCCCcCEEEECCEEEecC-CHHHHHHH
Confidence 3679999999999999999976 34555 5555331 1 23445567889999999999887766 55777766
Q ss_pred h
Q 026661 226 S 226 (235)
Q Consensus 226 s 226 (235)
.
T Consensus 73 ~ 73 (81)
T PRK10329 73 H 73 (81)
T ss_pred H
Confidence 4
No 114
>smart00594 UAS UAS domain.
Probab=98.47 E-value=1.2e-06 Score=69.61 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=68.8
Q ss_pred ccccccCCCChhHHHHHHhhcccceEEEecCCCHHHHHHHH-HhhHHhh-----ccCcEEEccCCCCCCchhhHHHhHhc
Q 026661 125 FETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV-----KQLNYVECFPDGYRKGTKIAKACSDA 198 (235)
Q Consensus 125 ~~~~itt~s~~~~~~la~~L~~~gav~ygA~WCphC~~~k~-~f~k~A~-----~~l~~Vec~~d~~n~~~k~~~lC~~~ 198 (235)
++|.....|=..+++.|++=.+...+.++++||+.|+.+.. .|.+... +++-.+.+|.+. .+ -.++++++
T Consensus 7 ~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~-~e---g~~l~~~~ 82 (122)
T smart00594 7 YGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDT-SE---GQRVSQFY 82 (122)
T ss_pred CCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCC-hh---HHHHHHhc
Confidence 34556666666666777776667899999999999999864 5765432 122233455443 22 35889999
Q ss_pred CCCccceeEE---CC-E-------EecCCCChHHHHHH
Q 026661 199 KIEGFPTWVI---NG-Q-------VLSGEQDLSDLAKA 225 (235)
Q Consensus 199 ~I~gyPTw~i---nG-~-------~y~G~~~le~L~~~ 225 (235)
++++||++.+ +| + ++.|..+.++|.+.
T Consensus 83 ~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~ 120 (122)
T smart00594 83 KLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTF 120 (122)
T ss_pred CcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHh
Confidence 9999999888 54 2 68999999999865
No 115
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9.4e-07 Score=69.82 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=61.6
Q ss_pred HHHhhcccceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCCCCh
Q 026661 140 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDL 219 (235)
Q Consensus 140 la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~~~l 219 (235)
.-+-+.+..+++|..+|||.||+.|.+|.+. ......||.|.++..+ .=+..+-+-.|.+.+|.++|||+-..|..++
T Consensus 7 v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~-~v~~~vvELD~~~~g~-eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl 84 (104)
T KOG1752|consen 7 VRKMISENPVVIFSKSSCPYCHRAKELLSDL-GVNPKVVELDEDEDGS-EIQKALKKLTGQRTVPNVFIGGKFIGGASDL 84 (104)
T ss_pred HHHHhhcCCEEEEECCcCchHHHHHHHHHhC-CCCCEEEEccCCCCcH-HHHHHHHHhcCCCCCCEEEECCEEEcCHHHH
Confidence 4455677889999999999999999999983 2344578888764222 1133334456788999999999999888877
Q ss_pred HHHHH
Q 026661 220 SDLAK 224 (235)
Q Consensus 220 e~L~~ 224 (235)
.+|.+
T Consensus 85 ~~lh~ 89 (104)
T KOG1752|consen 85 MALHK 89 (104)
T ss_pred HHHHH
Confidence 77653
No 116
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.40 E-value=5.3e-07 Score=71.24 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=48.5
Q ss_pred HHHHHHhhcccceEEEecCCCHHHHHHHHHhhHHh--h-c---cCc--EEEccCCCCC----------------CchhhH
Q 026661 137 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V-K---QLN--YVECFPDGYR----------------KGTKIA 192 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A--~-~---~l~--~Vec~~d~~n----------------~~~k~~ 192 (235)
.+++++.-.+.-++.|+|+|||+|+++.+.+.+.. . + ++. .|..|.+... ......
T Consensus 10 ~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T cd03009 10 KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS 89 (131)
T ss_pred CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence 34555555566788999999999999999887531 1 1 233 4455433100 001124
Q ss_pred HHhHhcCCCccceeEE---CCE
Q 026661 193 KACSDAKIEGFPTWVI---NGQ 211 (235)
Q Consensus 193 ~lC~~~~I~gyPTw~i---nG~ 211 (235)
+++++++|+++||.++ ||+
T Consensus 90 ~~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred HHHHHcCCCCCCEEEEECCCCC
Confidence 6788999999999877 675
No 117
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.36 E-value=2.1e-06 Score=66.94 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=63.4
Q ss_pred hhHHHHHHhhcccceEEEecCCCHHHHHHHH-HhhHHhh-----ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE
Q 026661 135 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV-----KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 208 (235)
Q Consensus 135 ~~~~~la~~L~~~gav~ygA~WCphC~~~k~-~f~k~A~-----~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i 208 (235)
+.+++.|++=.+.-+++++++||+.|+.++. .|.++.. ++.-.+.+|.++ .+ ..+++..++++++||+.+
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e---~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SE---GQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-cc---HHHHHHHhCccCCCeEEE
Confidence 3566677777777788999999999999964 6766432 122234445432 12 357899999999999887
Q ss_pred ----CCE---EecCCCChHHHHHHh
Q 026661 209 ----NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 209 ----nG~---~y~G~~~le~L~~~s 226 (235)
+|+ ++.|..+.+++.+..
T Consensus 83 i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 83 IDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred EeCccCcEeEEEcCCCCHHHHHHHH
Confidence 465 789999999887643
No 118
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.35 E-value=2.1e-06 Score=73.99 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=50.8
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhc-cCcEEEccCCCCC----Cc---hhhHHHhHhcCC--CccceeEE---CCE----
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYR----KG---TKIAKACSDAKI--EGFPTWVI---NGQ---- 211 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~-~l~~Vec~~d~~n----~~---~k~~~lC~~~~I--~gyPTw~i---nG~---- 211 (235)
++.|+|.|||+|++..|.+.+.+.+ ++.++-.+.|+.. +. .....+.+++|+ .++||.++ ||+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 8889999999999999988875322 3444333322210 00 002235567885 79999776 775
Q ss_pred EecCCCChHHHHHH
Q 026661 212 VLSGEQDLSDLAKA 225 (235)
Q Consensus 212 ~y~G~~~le~L~~~ 225 (235)
.+.|..+.++|.+.
T Consensus 153 ~~~G~~~~~~L~~~ 166 (181)
T PRK13728 153 LLQGATDAAGFMAR 166 (181)
T ss_pred EEECCCCHHHHHHH
Confidence 47899998888653
No 119
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.30 E-value=1.2e-06 Score=69.87 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=48.5
Q ss_pred hHHHHHHhhcccceEEEecCCCHHHHHHHHHhhHHh--h-c---cCc--EEEccCCCC-----------------CCchh
Q 026661 136 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V-K---QLN--YVECFPDGY-----------------RKGTK 190 (235)
Q Consensus 136 ~~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A--~-~---~l~--~Vec~~d~~-----------------n~~~k 190 (235)
..+.+++.-.+.-++.|+|+|||+|+++.+.+.+.+ . + ++. .|.++.+.. .....
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 455666655566678999999999999999887632 1 1 233 455554310 00011
Q ss_pred hHHHhHhcCCCccceeEE---CCE
Q 026661 191 IAKACSDAKIEGFPTWVI---NGQ 211 (235)
Q Consensus 191 ~~~lC~~~~I~gyPTw~i---nG~ 211 (235)
...+.+.++|.++||.++ ||+
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~ 111 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGD 111 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCC
Confidence 235566799999999886 565
No 120
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.28 E-value=2.6e-06 Score=83.61 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=66.0
Q ss_pred hHHHHHHhhc-ccceEEEecCCCHHHHHHHHHhhHHhhc--cCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEECC
Q 026661 136 FALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 210 (235)
Q Consensus 136 ~~~~la~~L~-~~gav~ygA~WCphC~~~k~~f~k~A~~--~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG 210 (235)
..++..+.|+ ...++.|..+|||+|.+......+.+.. ++. .||.+. ++++.++++|++.|+++|||
T Consensus 466 ~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--------~~~~~~~~~v~~vP~~~i~~ 537 (555)
T TIGR03143 466 ELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--------FPDLKDEYGIMSVPAIVVDD 537 (555)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--------cHHHHHhCCceecCEEEECC
Confidence 4445555664 4468899999999999999988876543 353 455442 46899999999999999999
Q ss_pred E-EecCCCChHHHHHHhC
Q 026661 211 Q-VLSGEQDLSDLAKASG 227 (235)
Q Consensus 211 ~-~y~G~~~le~L~~~sg 227 (235)
+ .+.|..+.+++.++.|
T Consensus 538 ~~~~~G~~~~~~~~~~~~ 555 (555)
T TIGR03143 538 QQVYFGKKTIEEMLELIG 555 (555)
T ss_pred EEEEeeCCCHHHHHHhhC
Confidence 7 7999999999999876
No 121
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.28 E-value=1.7e-06 Score=63.88 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=46.9
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhHHh--h--ccCc--EEEccCC-CCCC--------------chhhHHHhH
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPD-GYRK--------------GTKIAKACS 196 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A--~--~~l~--~Vec~~d-~~n~--------------~~k~~~lC~ 196 (235)
..+++--.+.-+++|+++|||+|+++.+.+.+.. . .++. .|+++++ ...- -.+-.++.+
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAK 91 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHH
Confidence 3444333556788999999999999998887742 2 2343 4555542 0000 000136788
Q ss_pred hcCCCccceeEE---CCE
Q 026661 197 DAKIEGFPTWVI---NGQ 211 (235)
Q Consensus 197 ~~~I~gyPTw~i---nG~ 211 (235)
++++.++|++++ +|+
T Consensus 92 ~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 92 AYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred hcCcCccceEEEECCCCc
Confidence 999999999877 565
No 122
>PRK10824 glutaredoxin-4; Provisional
Probab=98.27 E-value=2.7e-06 Score=68.28 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=59.7
Q ss_pred HHHHHhhcccceEEEec-----CCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEE
Q 026661 138 LSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 212 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA-----~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~ 212 (235)
..+.+.+++..+++|.. ||||+|++.|.++.+. .....++|.+.|. + . +..+-+..|-+.+|.++|||+.
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-~i~~~~idi~~d~-~--~-~~~l~~~sg~~TVPQIFI~G~~ 80 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-GERFAYVDILQNP-D--I-RAELPKYANWPTFPQLWVDGEL 80 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-CCCceEEEecCCH-H--H-HHHHHHHhCCCCCCeEEECCEE
Confidence 34566777888899977 6999999999999874 2345567776442 1 1 2344445688999999999998
Q ss_pred ecCCCChHHHHH
Q 026661 213 LSGEQDLSDLAK 224 (235)
Q Consensus 213 y~G~~~le~L~~ 224 (235)
..|-.++.+|.+
T Consensus 81 IGG~ddl~~l~~ 92 (115)
T PRK10824 81 VGGCDIVIEMYQ 92 (115)
T ss_pred EcChHHHHHHHH
Confidence 888877766643
No 123
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.21 E-value=3.3e-06 Score=54.59 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=39.3
Q ss_pred eEEEecCCCHHHHHHHHHhhHH--hhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSE--AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 208 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~--A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i 208 (235)
+++|++.|||+|+++++.+.+. ...++.++.++.++..+ ..+...+.++.++|++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA---LEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH---HhhHHHhCCCccccEEEE
Confidence 3678999999999999999864 12456655555443221 122224789999999988
No 124
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.20 E-value=4.2e-06 Score=61.78 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=42.5
Q ss_pred hHHHHHHhhcccceEEEecCCCHHHHHHHHHh-hHHh-----hccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE
Q 026661 136 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF-GSEA-----VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 208 (235)
Q Consensus 136 ~~~~la~~L~~~gav~ygA~WCphC~~~k~~f-~k~A-----~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i 208 (235)
.+.+.|+.=++.-.++|+|+||++|+.++..+ .+.. .+++..|..|.+..+ .+. + ...+++||+.|
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~-----~~~-~-~~~~~~P~~~~ 79 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED-----PNA-Q-FDRQGYPTFFF 79 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH-----HHH-H-HHHCSSSEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC-----hhH-H-hCCccCCEEEE
Confidence 45566666677778899999999999998866 3211 244556666554211 122 2 22278999876
No 125
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.14 E-value=2.2e-06 Score=65.57 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=40.3
Q ss_pred HHHHHhh-cccceEEEecCCCHHHHHHHHHhhHHh--h-ccCcEEEccCCCCCCchhhHHHhHhcCCCcccee
Q 026661 138 LSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 206 (235)
Q Consensus 138 ~~la~~L-~~~gav~ygA~WCphC~~~k~~f~k~A--~-~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw 206 (235)
++|+.+. .+.-+++|+++|||+|+++.+.+.+.+ . .++..+....+. . .+..+.++++++.++|+.
T Consensus 13 ~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~-~--~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 13 VRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGE-K--AEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred EEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCC-H--HHHHHHHHHhCCCCCcEE
Confidence 3444543 345577899999999999999887742 1 335444332221 1 124456666777666764
No 126
>PTZ00062 glutaredoxin; Provisional
Probab=98.13 E-value=1.2e-05 Score=70.44 Aligned_cols=84 Identities=11% Similarity=0.164 Sum_probs=60.0
Q ss_pred hHHHHHHhhcccceEEEec-----CCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECC
Q 026661 136 FALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 210 (235)
Q Consensus 136 ~~~~la~~L~~~gav~ygA-----~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG 210 (235)
....+.+.++++.+++|.. ||||+|++.|.++.+. +++|.+.|-+. ++. -+..+-+..|-+.+|.++|||
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~---~i~y~~~DI~~-d~~-~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS---GVKYETYNIFE-DPD-LREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc---CCCEEEEEcCC-CHH-HHHHHHHHhCCCCCCeEEECC
Confidence 4556777788888999965 7999999999999974 34444443322 111 123333446888999999999
Q ss_pred EEecCCCChHHHHH
Q 026661 211 QVLSGEQDLSDLAK 224 (235)
Q Consensus 211 ~~y~G~~~le~L~~ 224 (235)
+.+.|-.++.+|.+
T Consensus 177 ~~IGG~d~l~~l~~ 190 (204)
T PTZ00062 177 ELIGGHDIIKELYE 190 (204)
T ss_pred EEEcChHHHHHHHH
Confidence 99999888877764
No 127
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.11 E-value=6.3e-06 Score=78.63 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=48.1
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhhccCc--EEEccCCCCCCchhhHHH---hH------hcCCCccceeEECCEEecCC
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKA---CS------DAKIEGFPTWVINGQVLSGE 216 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~~~l~--~Vec~~d~~n~~~k~~~l---C~------~~~I~gyPTw~inG~~y~G~ 216 (235)
.+++|+.+|||||++.|.++.+. .++ .||++.+. . ..+. .. +.|.+++|+++|||+.+.|-
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~---gi~~~~idi~~~~--~---~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf 74 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN---DIPFTQISLDDDV--K---RAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGY 74 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC---CCCeEEEECCCCh--h---HHHHHHHHhhccccccCCCCccCeEEECCEEEeCc
Confidence 47899999999999999999984 355 56665432 1 1121 11 24789999999999988888
Q ss_pred CChHH
Q 026661 217 QDLSD 221 (235)
Q Consensus 217 ~~le~ 221 (235)
.++.+
T Consensus 75 ~~l~~ 79 (410)
T PRK12759 75 DNLMA 79 (410)
T ss_pred hHHHH
Confidence 66654
No 128
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.06 E-value=1.3e-05 Score=65.72 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=42.9
Q ss_pred hhHHHHHHhhcccceEEEecCCCHHHHHHHHH-hhHHhh-----ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE
Q 026661 135 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQM-FGSEAV-----KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 208 (235)
Q Consensus 135 ~~~~~la~~L~~~gav~ygA~WCphC~~~k~~-f~k~A~-----~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i 208 (235)
+..++.|+.-.+.-.++|++.|||+|+.++.. |.+... +++-.|..+.|..++ . ....+ +++||+++
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~-----~-~~~~g-~~vPtivF 85 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDK-----N-LSPDG-QYVPRIMF 85 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCC-----C-cCccC-cccCeEEE
Confidence 45566677767777889999999999999875 544322 223223444332211 1 11234 79999888
Q ss_pred ---CCE
Q 026661 209 ---NGQ 211 (235)
Q Consensus 209 ---nG~ 211 (235)
+|+
T Consensus 86 ld~~g~ 91 (130)
T cd02960 86 VDPSLT 91 (130)
T ss_pred ECCCCC
Confidence 564
No 129
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.05 E-value=9.1e-06 Score=60.44 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=38.9
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHh--hc---cCc--EEEccCCC--------CC---------CchhhHHHhHhcCCCc
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEA--VK---QLN--YVECFPDG--------YR---------KGTKIAKACSDAKIEG 202 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A--~~---~l~--~Vec~~d~--------~n---------~~~k~~~lC~~~~I~g 202 (235)
.-+++|+|+||++|++.-|.+.+.. .+ ++. +|.+|.+. ++ ......++.+.++|++
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~ 82 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGING 82 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TS
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCc
Confidence 4578999999999999988876632 22 333 34444220 00 0012456777889999
Q ss_pred cceeEE---CCE
Q 026661 203 FPTWVI---NGQ 211 (235)
Q Consensus 203 yPTw~i---nG~ 211 (235)
+||+++ ||+
T Consensus 83 iP~~~lld~~G~ 94 (95)
T PF13905_consen 83 IPTLVLLDPDGK 94 (95)
T ss_dssp SSEEEEEETTSB
T ss_pred CCEEEEECCCCC
Confidence 999877 564
No 130
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.02 E-value=3.1e-05 Score=65.99 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=47.8
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHHhh-ccCcEEEccCCCCCC-----------c---hhhHHHhHhcCCCccceeEE--
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLNYVECFPDGYRK-----------G---TKIAKACSDAKIEGFPTWVI-- 208 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~A~-~~l~~Vec~~d~~n~-----------~---~k~~~lC~~~~I~gyPTw~i-- 208 (235)
+.-++.|+|+|||+|+++.|.+.+... .+.+.+-+..+.... . ....++.+++++.+.|+.++
T Consensus 75 k~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID 154 (189)
T TIGR02661 75 RPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLD 154 (189)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEEC
Confidence 345678999999999999998876422 123322221110000 0 00236778899999998665
Q ss_pred -CCE-EecCC-CChHHHHHHh
Q 026661 209 -NGQ-VLSGE-QDLSDLAKAS 226 (235)
Q Consensus 209 -nG~-~y~G~-~~le~L~~~s 226 (235)
+|+ ++.|. .+.+++.++.
T Consensus 155 ~~G~I~~~g~~~~~~~le~ll 175 (189)
T TIGR02661 155 QDGKIRAKGLTNTREHLESLL 175 (189)
T ss_pred CCCeEEEccCCCCHHHHHHHH
Confidence 677 56664 3445555443
No 131
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.01 E-value=3.7e-05 Score=60.88 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=29.9
Q ss_pred HHhHhcCCCccceeEECCEEecCCCChHHHHHHh
Q 026661 193 KACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 226 (235)
Q Consensus 193 ~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~s 226 (235)
+.+++.||.|.||+++||+.+.|..+.+.|.+..
T Consensus 120 ~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALGITGTPAFIIGDTVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcCCCcCCeEEECCEEecCCCCHHHHHHHh
Confidence 4456789999999999999999999999998764
No 132
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.99 E-value=1.9e-05 Score=83.37 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=54.7
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhh----ccCcEEEccC---CCCCCc------------------hhhHHHhHhcC
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAV----KQLNYVECFP---DGYRKG------------------TKIAKACSDAK 199 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~----~~l~~Vec~~---d~~n~~------------------~k~~~lC~~~~ 199 (235)
.+.-++.|+|+|||+|+...|.+.+... +.+.+|.+.. |..+.. ....++.++++
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 3456789999999999999999977432 1244554421 110000 00235667899
Q ss_pred CCccceeEE---CCE---EecCCCChHHHHHHh
Q 026661 200 IEGFPTWVI---NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 200 I~gyPTw~i---nG~---~y~G~~~le~L~~~s 226 (235)
|+++||.++ ||+ ++.|....++|.++.
T Consensus 500 V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l 532 (1057)
T PLN02919 500 VSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLV 532 (1057)
T ss_pred CCccceEEEECCCCeEEEEEecccCHHHHHHHH
Confidence 999999877 687 789998887766553
No 133
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.94 E-value=0.00012 Score=72.54 Aligned_cols=90 Identities=17% Similarity=0.293 Sum_probs=62.3
Q ss_pred hhHHHHHHhhcccceEEEecCCCHHHHHHHH-HhhHHh----hccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE-
Q 026661 135 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA----VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 208 (235)
Q Consensus 135 ~~~~~la~~L~~~gav~ygA~WCphC~~~k~-~f~k~A----~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i- 208 (235)
....++|+|=++.-.+.|+|+||-.||+.|+ .|++.. .++....+.|-.. ++.+.+++-+++|+-|.||.++
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~--~~p~~~~lLk~~~~~G~P~~~ff 541 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA--NDPAITALLKRLGVFGVPTYLFF 541 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC--CCHHHHHHHHHcCCCCCCEEEEE
Confidence 4556677776667788999999999999987 455421 1233334444322 2234678889999999999888
Q ss_pred --CCE---EecCCCChHHHHHHh
Q 026661 209 --NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 209 --nG~---~y~G~~~le~L~~~s 226 (235)
+|+ ...|.-+.+.+.++.
T Consensus 542 ~~~g~e~~~l~gf~~a~~~~~~l 564 (569)
T COG4232 542 GPQGSEPEILTGFLTADAFLEHL 564 (569)
T ss_pred CCCCCcCcCCcceecHHHHHHHH
Confidence 454 578888888777654
No 134
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.91 E-value=3.6e-05 Score=74.78 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=68.1
Q ss_pred hhHHHHHHhhc-ccceEEEecCCCHHHHHHHHHhhHHhhc--cCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEEC
Q 026661 135 PFALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 209 (235)
Q Consensus 135 ~~~~~la~~L~-~~gav~ygA~WCphC~~~k~~f~k~A~~--~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~in 209 (235)
+...+..+.|+ ...+++|..+.||||.+..+.+.+.+.. ++. .||... ++++.++++|++.|+.++|
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i~ 176 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL--------FQDEVEARNIMAVPTVFLN 176 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh--------CHhHHHhcCCcccCEEEEC
Confidence 45556666774 5568999999999999999999886542 332 344332 4689999999999999998
Q ss_pred CE-EecCCCChHHHHHHhCCC
Q 026661 210 GQ-VLSGEQDLSDLAKASGFP 229 (235)
Q Consensus 210 G~-~y~G~~~le~L~~~sg~~ 229 (235)
|+ .+.|..+.+++.+....+
T Consensus 177 ~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 177 GEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CcEEEecCCCHHHHHHHHhcc
Confidence 87 799999999999887653
No 135
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.91 E-value=1.9e-05 Score=65.73 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHHHhhcccceEEEecCCCHHHHHHHHHhhHHh----h-------ccCcEEEccCCCCCC-------------------c
Q 026661 139 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA----V-------KQLNYVECFPDGYRK-------------------G 188 (235)
Q Consensus 139 ~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A----~-------~~l~~Vec~~d~~n~-------------------~ 188 (235)
.+++.=.+.-++.|+|+|||.|++..|.+.+.. . +++..|-.+.|+..+ .
T Consensus 19 ~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~ 98 (146)
T cd03008 19 IVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFED 98 (146)
T ss_pred cHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccc
Confidence 444443455678999999999999999886521 0 134443333221100 0
Q ss_pred hhhHHHhHhcCCCccceeEE---CCE
Q 026661 189 TKIAKACSDAKIEGFPTWVI---NGQ 211 (235)
Q Consensus 189 ~k~~~lC~~~~I~gyPTw~i---nG~ 211 (235)
....++.++++|.++||.++ +|+
T Consensus 99 ~~~~~l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 99 EFRRELEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred hHHHHHHHHcCCCCCCEEEEECCCCc
Confidence 00136788999999999877 676
No 136
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.86 E-value=2.2e-05 Score=66.86 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=32.3
Q ss_pred hhHHHhHhcCCCccceeEE-CCEEecCCCChHHHHHH
Q 026661 190 KIAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKA 225 (235)
Q Consensus 190 k~~~lC~~~~I~gyPTw~i-nG~~y~G~~~le~L~~~ 225 (235)
+..++++++||+|.||+++ ||+.+.|..+.++|.++
T Consensus 160 ~~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l~~~ 196 (197)
T cd03020 160 ANLALGRQLGVNGTPTIVLADGRVVPGAPPAAQLEAL 196 (197)
T ss_pred HHHHHHHHcCCCcccEEEECCCeEecCCCCHHHHHhh
Confidence 3568899999999999999 79999999999999876
No 137
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.80 E-value=6.6e-05 Score=54.01 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=50.3
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhh--c-cCcEEEccCCCCCCchhhHHHhHhcC--CCccceeEE--CCE---EecC--
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAV--K-QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVI--NGQ---VLSG-- 215 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~--~-~l~~Vec~~d~~n~~~k~~~lC~~~~--I~gyPTw~i--nG~---~y~G-- 215 (235)
-++.|+++|||+|+..+|.+.+.+. . .+.++.++.... .++....++ +..+|++.+ +|+ .+.|
T Consensus 35 ~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 109 (127)
T COG0526 35 VLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE-----NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109 (127)
T ss_pred EEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC-----ChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcc
Confidence 3445569999999999999987542 2 355666655311 246777888 999999875 664 3444
Q ss_pred CCChHHHHHHhCC
Q 026661 216 EQDLSDLAKASGF 228 (235)
Q Consensus 216 ~~~le~L~~~sg~ 228 (235)
..+...+....++
T Consensus 110 ~~~~~~~~~~~~~ 122 (127)
T COG0526 110 VLPKEALIDALGE 122 (127)
T ss_pred cCCHHHHHHHhcc
Confidence 5566666554443
No 138
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.71 E-value=0.0001 Score=58.08 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.3
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhHH
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE 170 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~ 170 (235)
.+++++-.+.-+++|+|.|||.|+++.+.+.+.
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 456665345567789999999999998888763
No 139
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.61 E-value=0.00014 Score=58.11 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=51.2
Q ss_pred hhHHHHHHhhcccceEEEecC-CCHHHHHHHHHhhHHh----hccCcEEEccCCCCCCc---------------hhhHHH
Q 026661 135 PFALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKG---------------TKIAKA 194 (235)
Q Consensus 135 ~~~~~la~~L~~~gav~ygA~-WCphC~~~k~~f~k~A----~~~l~~Vec~~d~~n~~---------------~k~~~l 194 (235)
.....|++.-.+.-++.|++. |||+|+.+.|.+.+.. .+.+.+|-+..+....- ....++
T Consensus 18 g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 97 (146)
T PF08534_consen 18 GKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGAL 97 (146)
T ss_dssp SEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHH
T ss_pred CCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHH
Confidence 344556663234457789999 9999999998777642 12244443332210000 011367
Q ss_pred hHhcCCC---------ccceeEE---CCE---EecCCCC
Q 026661 195 CSDAKIE---------GFPTWVI---NGQ---VLSGEQD 218 (235)
Q Consensus 195 C~~~~I~---------gyPTw~i---nG~---~y~G~~~ 218 (235)
.+++++. ++|++++ ||+ ...|..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 98 AKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 7788988 9999776 887 5666655
No 140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.60 E-value=0.0002 Score=69.70 Aligned_cols=85 Identities=18% Similarity=0.340 Sum_probs=65.8
Q ss_pred hhHHHHHHhhc-ccceEEEecCCCHHHHHHHHHhhHHhhc--cCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEEC
Q 026661 135 PFALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 209 (235)
Q Consensus 135 ~~~~~la~~L~-~~gav~ygA~WCphC~~~k~~f~k~A~~--~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~in 209 (235)
+..++..+.|. ...+++|..+-||+|.+..+.+.+.+.. ++. .||... ++++.++++|++.|+.++|
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i~ 177 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL--------FQDEVEALGIQGVPAVFLN 177 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh--------CHHHHHhcCCcccCEEEEC
Confidence 34556666664 5578899999999999999999886543 332 233322 5789999999999999998
Q ss_pred CE-EecCCCChHHHHHHhC
Q 026661 210 GQ-VLSGEQDLSDLAKASG 227 (235)
Q Consensus 210 G~-~y~G~~~le~L~~~sg 227 (235)
|+ .+.|..+.+++.+..+
T Consensus 178 ~~~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 178 GEEFHNGRMDLAELLEKLE 196 (515)
T ss_pred CcEEEecCCCHHHHHHHHh
Confidence 87 7999999999977764
No 141
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.60 E-value=1.5e-05 Score=71.24 Aligned_cols=84 Identities=19% Similarity=0.288 Sum_probs=63.6
Q ss_pred HHHHhhcccceEEEecCCCHHHHHHHHHhhHHhh------ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CC
Q 026661 139 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 210 (235)
Q Consensus 139 ~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~------~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG 210 (235)
...+-|+-.=..||+|||||.|++.++.|..-|- -++.+||...+ + -+--++=|...||+.= +|
T Consensus 33 nw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n---p-----gLsGRF~vtaLptIYHvkDG 104 (248)
T KOG0913|consen 33 NWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN---P-----GLSGRFLVTALPTIYHVKDG 104 (248)
T ss_pred chhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec---c-----ccceeeEEEecceEEEeecc
Confidence 3444455555779999999999999999987442 24568888754 2 3445688999999764 89
Q ss_pred E--EecCCCChHHHHHHhCCCC
Q 026661 211 Q--VLSGEQDLSDLAKASGFPE 230 (235)
Q Consensus 211 ~--~y~G~~~le~L~~~sg~~g 230 (235)
+ +|+|.|+.+++..+.-++.
T Consensus 105 eFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 105 EFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred ccccccCcccchhHHHHHHhhh
Confidence 7 9999999999988876643
No 142
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.54 E-value=0.00046 Score=60.63 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=59.8
Q ss_pred HHHHhhcccceEEEecCCCHHHHHHHHHhhHHhh-ccCcEEEccCCCCC-----CchhhHHHhHhcCCCccceeEE---C
Q 026661 139 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLNYVECFPDGYR-----KGTKIAKACSDAKIEGFPTWVI---N 209 (235)
Q Consensus 139 ~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~-~~l~~Vec~~d~~n-----~~~k~~~lC~~~~I~gyPTw~i---n 209 (235)
.+.+.=++.|.++|+.+.||+|+.|.|++..-+. -.+..+-++.||.. +-..-..+.++.||..+|++++ +
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 3344445668999999999999999999887542 23554444434310 0000246788999999999887 4
Q ss_pred C-E---EecCCCChHHHHHH
Q 026661 210 G-Q---VLSGEQDLSDLAKA 225 (235)
Q Consensus 210 G-~---~y~G~~~le~L~~~ 225 (235)
+ + .-.|..++++|.+-
T Consensus 194 ~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 194 TKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CCeEEEEeeecCCHHHHHHh
Confidence 4 4 57899999999763
No 143
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.51 E-value=0.00022 Score=61.59 Aligned_cols=86 Identities=10% Similarity=-0.041 Sum_probs=56.4
Q ss_pred HHhhcccceEEEecCCCHHHHHHHHHhhHHhhccCcE--------EEccCCC----------------CCC-----chhh
Q 026661 141 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--------VECFPDG----------------YRK-----GTKI 191 (235)
Q Consensus 141 a~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~--------Vec~~d~----------------~n~-----~~k~ 191 (235)
++-.-++-.+.|+|.|||.|+.-.|++.+.+.++++. |+-+.+. .++ -.+.
T Consensus 55 ~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 55 AELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred HHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 3444566788999999999999999998864444433 3433210 000 0001
Q ss_pred HHHhHhcCCCcccee--EE--CCE---EecCCCChHHHHHHh
Q 026661 192 AKACSDAKIEGFPTW--VI--NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw--~i--nG~---~y~G~~~le~L~~~s 226 (235)
.....++|++++|+- +| +|+ ++.|..+.+++.++.
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 245568999999765 44 676 899999988887654
No 144
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.49 E-value=0.00038 Score=56.80 Aligned_cols=33 Identities=18% Similarity=0.028 Sum_probs=25.4
Q ss_pred HHHHHHhhcccceEEEecCCCHHHHHHHHHhhHH
Q 026661 137 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE 170 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~ 170 (235)
..+|+++-.+.-+++|+|.||| |+...|.+.+.
T Consensus 14 ~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l 46 (152)
T cd00340 14 PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEAL 46 (152)
T ss_pred EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHH
Confidence 3466666555567789999999 99998888763
No 145
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.46 E-value=0.00039 Score=58.04 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=48.7
Q ss_pred eEEEecC------CCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCC----CccceeEECCEEecCCCC
Q 026661 149 AKMYGAF------WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI----EGFPTWVINGQVLSGEQD 218 (235)
Q Consensus 149 av~ygA~------WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I----~gyPTw~inG~~y~G~~~ 218 (235)
+++|..+ +||+|++.|.++.+. .++|-|.|.+. ++. -..++-+..+- ..+|.++|||+.+.|..+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---~V~~~e~DVs~-~~~-~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de 76 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---RVKFDERDVSM-DSG-FREELRELLGAELKAVSLPRVFVDGRYLGGAEE 76 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---CCcEEEEECCC-CHH-HHHHHHHHhCCCCCCCCCCEEEECCEEEecHHH
Confidence 6789999 999999999999874 35554444332 111 12344333444 789999999998888877
Q ss_pred hHHHHH
Q 026661 219 LSDLAK 224 (235)
Q Consensus 219 le~L~~ 224 (235)
+.+|.+
T Consensus 77 l~~L~e 82 (147)
T cd03031 77 VLRLNE 82 (147)
T ss_pred HHHHHH
Confidence 776643
No 146
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.42 E-value=0.00052 Score=49.49 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=44.2
Q ss_pred EEEecCCCHHHHHHHHHhhHHh---hccC--cEEEccCCCCC---Cc---------------------hhhHHHhHhcCC
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEA---VKQL--NYVECFPDGYR---KG---------------------TKIAKACSDAKI 200 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A---~~~l--~~Vec~~d~~n---~~---------------------~k~~~lC~~~~I 200 (235)
.+|+.+.||||+...+.+.+.. ..++ .++.....+.+ .. .+..+..++.|+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 81 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV 81 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 5788999999999999887741 2333 34444333211 00 012345677999
Q ss_pred CccceeEECCEEecCC
Q 026661 201 EGFPTWVINGQVLSGE 216 (235)
Q Consensus 201 ~gyPTw~inG~~y~G~ 216 (235)
.|.||++++|++|.|.
T Consensus 82 ~g~Pt~v~~~~~~~~~ 97 (98)
T cd02972 82 TGTPTFVVNGEKYSGA 97 (98)
T ss_pred CCCCEEEECCEEcCCC
Confidence 9999999999777664
No 147
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.40 E-value=0.00035 Score=61.85 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=34.3
Q ss_pred hhHHHhHhcCCCccceeEE-CCEEecCCCChHHHHHHhC
Q 026661 190 KIAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKASG 227 (235)
Q Consensus 190 k~~~lC~~~~I~gyPTw~i-nG~~y~G~~~le~L~~~sg 227 (235)
++.+++++.||+|.||+++ ||+...|.++.++|.++..
T Consensus 190 ~~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~~L~~~l~ 228 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIVLSNGTLVPGYQGPKEMKAFLD 228 (232)
T ss_pred HhHHHHHHcCCccccEEEEcCCeEeeCCCCHHHHHHHHH
Confidence 3578899999999999999 9999999999999998764
No 148
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.26 E-value=0.0014 Score=56.56 Aligned_cols=34 Identities=6% Similarity=0.012 Sum_probs=25.5
Q ss_pred HHHHHHhhcccceEEEecCCCHHHHHHHHHhhHH
Q 026661 137 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE 170 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~ 170 (235)
.+.|.+.-.+.-++.|+|.|||.|++..|.+.+.
T Consensus 31 ~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l 64 (199)
T PTZ00056 31 TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRL 64 (199)
T ss_pred EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHH
Confidence 3466665445567799999999999888777663
No 149
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.23 E-value=0.00029 Score=59.59 Aligned_cols=71 Identities=20% Similarity=0.439 Sum_probs=43.3
Q ss_pred HHhhcc-cceEEEecCCCHHHHHHH----HHhhHHhh--ccCc--EEEccCCCCC-----------------CchhhHHH
Q 026661 141 AKHLHA-IGAKMYGAFWCSHCLEQK----QMFGSEAV--KQLN--YVECFPDGYR-----------------KGTKIAKA 194 (235)
Q Consensus 141 a~~L~~-~gav~ygA~WCphC~~~k----~~f~k~A~--~~l~--~Vec~~d~~n-----------------~~~k~~~l 194 (235)
-+||.- .....|+|.|||.|++.- ++|.+... ..+. +|.=|.++.. ...+.+++
T Consensus 28 ~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l 107 (157)
T KOG2501|consen 28 SEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKL 107 (157)
T ss_pred hHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHH
Confidence 345554 446689999999999874 45544211 1233 2322222100 01235688
Q ss_pred hHhcCCCccceeEE---CCE
Q 026661 195 CSDAKIEGFPTWVI---NGQ 211 (235)
Q Consensus 195 C~~~~I~gyPTw~i---nG~ 211 (235)
+++++|.++|++.+ +|.
T Consensus 108 ~~ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 108 SEKYEVKGIPALVILKPDGT 127 (157)
T ss_pred HHhcccCcCceeEEecCCCC
Confidence 99999999999998 774
No 150
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.04 E-value=0.0015 Score=53.74 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=53.6
Q ss_pred HHHHhhcccc-eEEEec---CCCHHHHHHHHHhhHHh--hc--cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--
Q 026661 139 SLAKHLHAIG-AKMYGA---FWCSHCLEQKQMFGSEA--VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 208 (235)
Q Consensus 139 ~la~~L~~~g-av~ygA---~WCphC~~~k~~f~k~A--~~--~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-- 208 (235)
.+...+...+ .+.|.+ --+|.+-+..=++.+.+ +. ++.++.+|.|. .++++.++||+++||+++
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~------~~~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ------SEAIGDRFGVFRFPATLVFT 99 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC------CHHHHHHcCCccCCEEEEEE
Confidence 3444555554 333333 23455555554454432 22 35555555553 258999999999999888
Q ss_pred CCE---EecCCCChHHHHHHhC
Q 026661 209 NGQ---VLSGEQDLSDLAKASG 227 (235)
Q Consensus 209 nG~---~y~G~~~le~L~~~sg 227 (235)
||+ ++.|.++.++|.++..
T Consensus 100 dGk~v~~i~G~~~k~~l~~~I~ 121 (132)
T PRK11509 100 GGNYRGVLNGIHPWAELINLMR 121 (132)
T ss_pred CCEEEEEEeCcCCHHHHHHHHH
Confidence 998 7999999999987654
No 151
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.04 E-value=0.00033 Score=56.65 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=31.7
Q ss_pred ecCCCHHHHHHHHHhhHH---hhccCcEEEccCCC----CCCchhhHHHhHhcCCCccceeEE--CCEEecCC
Q 026661 153 GAFWCSHCLEQKQMFGSE---AVKQLNYVECFPDG----YRKGTKIAKACSDAKIEGFPTWVI--NGQVLSGE 216 (235)
Q Consensus 153 gA~WCphC~~~k~~f~k~---A~~~l~~Vec~~d~----~n~~~k~~~lC~~~~I~gyPTw~i--nG~~y~G~ 216 (235)
|-+|||+|.+.+|...+. +.++..+|.|.... +++.-+++. =.+.+++++||++- +++++.+.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~-~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT-DPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH---CC---SSSEEEECTSS-EEEHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE-cceeeeeecceEEEECCCCccchh
Confidence 347999999999988773 12334455553211 011101211 12489999999887 45565554
No 152
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.93 E-value=0.003 Score=52.19 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHHHHh-hcccceEEEecCCCHHHHHHHHHhhHHh--h--ccCcEEEccCCCC------CCc-----------------h
Q 026661 138 LSLAKH-LHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGY------RKG-----------------T 189 (235)
Q Consensus 138 ~~la~~-L~~~gav~ygA~WCphC~~~k~~f~k~A--~--~~l~~Vec~~d~~------n~~-----------------~ 189 (235)
.++.+. -.+.-+++|+++|||+|.++.+.+.+.. + +++.+|-+..|.. ... .
T Consensus 17 v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 96 (171)
T cd02969 17 YSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD 96 (171)
T ss_pred EeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence 455554 3455678999999999998888776632 1 2355444433210 000 0
Q ss_pred hhHHHhHhcCCCccceeEE---CCE-EecC
Q 026661 190 KIAKACSDAKIEGFPTWVI---NGQ-VLSG 215 (235)
Q Consensus 190 k~~~lC~~~~I~gyPTw~i---nG~-~y~G 215 (235)
...++.+++||.+.|+.++ ||+ +|.|
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 97 ETQEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred CchHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 1235567889999998777 676 4553
No 153
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.91 E-value=0.00067 Score=55.17 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=42.0
Q ss_pred CChhHHHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhh--cc--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEE
Q 026661 133 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 208 (235)
Q Consensus 133 s~~~~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~--~~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i 208 (235)
|.+....++..-+......+.-+|||+|+..-|.+.+.+. .+ +.++--|.+ ... +.+.. ..|.+.+||+++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~---~el-~~~~l-t~g~~~IP~~I~ 103 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN---KEL-MDQYL-TNGGRSIPTFIF 103 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH---HHH-TTTTT-T-SS--SSEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC---hhH-HHHHH-hCCCeecCEEEE
Confidence 3344455566666678889999999999999999998542 22 344443322 110 11222 388999999998
Q ss_pred ---CCEE--ecCCCCh
Q 026661 209 ---NGQV--LSGEQDL 219 (235)
Q Consensus 209 ---nG~~--y~G~~~l 219 (235)
+|+. .=|+|..
T Consensus 104 ~d~~~~~lg~wgerP~ 119 (129)
T PF14595_consen 104 LDKDGKELGRWGERPK 119 (129)
T ss_dssp E-TT--EEEEEESS-H
T ss_pred EcCCCCEeEEEcCCCH
Confidence 4553 3455554
No 154
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=96.88 E-value=0.0061 Score=54.52 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=27.0
Q ss_pred hHHHHHHhhcccceEEEecCCCHHHHHHHHHhhHH
Q 026661 136 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE 170 (235)
Q Consensus 136 ~~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~ 170 (235)
..+.|++.-.+.-++.|+|+|||.|+...|.+.+.
T Consensus 90 ~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L 124 (236)
T PLN02399 90 KDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHL 124 (236)
T ss_pred CEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHH
Confidence 34577776555667899999999999988877663
No 155
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.78 E-value=0.0074 Score=49.13 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=23.7
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhH
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k 169 (235)
+.|+++-.+.-+++|+|+|||.|+...|.+.+
T Consensus 15 ~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~ 46 (153)
T TIGR02540 15 VSLEKYRGKVSLVVNVASECGFTDQNYRALQE 46 (153)
T ss_pred ecHHHhCCCEEEEEEeCCCCCchhhhHHHHHH
Confidence 56666644445788999999999987775554
No 156
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.67 E-value=0.0057 Score=52.06 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=43.4
Q ss_pred ChhHHHHHHhhcccceEEEecCCCHHHHHHH-HHhhHHhh-----ccCcEEEccCCCCCCchhhHHHhHhc--------C
Q 026661 134 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQK-QMFGSEAV-----KQLNYVECFPDGYRKGTKIAKACSDA--------K 199 (235)
Q Consensus 134 ~~~~~~la~~L~~~gav~ygA~WCphC~~~k-~~f~k~A~-----~~l~~Vec~~d~~n~~~k~~~lC~~~--------~ 199 (235)
++...+.|+.-.+.-.+..|.+||.-||.|. +.|.+... +++--|.+|.++ .+++-..+ |
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree------~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE------RPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-------HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc------CccHHHHHHHHHHHhcC
Confidence 3567888988888889999999999999887 47766322 223345556654 35665555 8
Q ss_pred CCccceeEE---CCE
Q 026661 200 IEGFPTWVI---NGQ 211 (235)
Q Consensus 200 I~gyPTw~i---nG~ 211 (235)
..|+|+-++ +|+
T Consensus 100 ~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGK 114 (163)
T ss_dssp ---SSEEEEE-TTS-
T ss_pred CCCCCceEEECCCCC
Confidence 899999777 777
No 157
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.65 E-value=0.0057 Score=48.14 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=49.6
Q ss_pred HHHHHhhcccceEEEe-cCCCHHHHHHHHHhhHHh----hccCcEEEccCCCCCCc---------------hhhHHHhHh
Q 026661 138 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKG---------------TKIAKACSD 197 (235)
Q Consensus 138 ~~la~~L~~~gav~yg-A~WCphC~~~k~~f~k~A----~~~l~~Vec~~d~~n~~---------------~k~~~lC~~ 197 (235)
+.+++.-.+.-+++|+ +.|||.|..+.+.+.+.. .+++..|-+..|....- ....++.++
T Consensus 16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 95 (140)
T cd03017 16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKA 95 (140)
T ss_pred EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence 4555543455567777 689999998877765521 12233332222110000 001256677
Q ss_pred cCCCcc---------ceeEE---CCE---EecCCCChHHHHHH
Q 026661 198 AKIEGF---------PTWVI---NGQ---VLSGEQDLSDLAKA 225 (235)
Q Consensus 198 ~~I~gy---------PTw~i---nG~---~y~G~~~le~L~~~ 225 (235)
+|+... |+.++ +|+ .+.|...-+++.+.
T Consensus 96 ~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 96 YGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred hCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 888887 77665 576 67777766666553
No 158
>PLN02412 probable glutathione peroxidase
Probab=96.65 E-value=0.0074 Score=50.41 Aligned_cols=33 Identities=12% Similarity=-0.034 Sum_probs=23.5
Q ss_pred HHHHHHhhcccceEEEecCCCHHHHHHHHHhhH
Q 026661 137 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k 169 (235)
.+.|++.-.+.-+++|+|+|||.|++..+.+.+
T Consensus 21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHH
Confidence 455665534445667999999999987766655
No 159
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.53 E-value=0.013 Score=53.16 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=58.7
Q ss_pred HHHhhcccceEEEecCCCHHHHHHHHHhhHHhh-ccCcEEEccCCCCC-Cc----hhhHHHhHhcCCCccceeEE---C-
Q 026661 140 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLNYVECFPDGYR-KG----TKIAKACSDAKIEGFPTWVI---N- 209 (235)
Q Consensus 140 la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~-~~l~~Vec~~d~~n-~~----~k~~~lC~~~~I~gyPTw~i---n- 209 (235)
+.+.=++.|.++|+..-||+|+.+.|....-+. -.+..+-++.||.. ++ ..-....++.||+-+|++++ +
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 333336678999999999999999998876432 23555555445420 10 00134678899999999888 4
Q ss_pred CE---EecCCCChHHHHHH
Q 026661 210 GQ---VLSGEQDLSDLAKA 225 (235)
Q Consensus 210 G~---~y~G~~~le~L~~~ 225 (235)
++ .=.|.-+.++|.+-
T Consensus 225 ~~~~pv~~G~iS~deL~~R 243 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKER 243 (256)
T ss_pred CcEEEEeeccCCHHHHHHH
Confidence 33 46799999999753
No 160
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.43 E-value=0.017 Score=52.17 Aligned_cols=84 Identities=17% Similarity=0.078 Sum_probs=57.6
Q ss_pred HHhh-cccceEEEecCCCHHHHHHHHHhhHHhh-ccCcEEEccCCCCC-Cc----hhhHHHhHhcCCCccceeEE---C-
Q 026661 141 AKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLNYVECFPDGYR-KG----TKIAKACSDAKIEGFPTWVI---N- 209 (235)
Q Consensus 141 a~~L-~~~gav~ygA~WCphC~~~k~~f~k~A~-~~l~~Vec~~d~~n-~~----~k~~~lC~~~~I~gyPTw~i---n- 209 (235)
.++| ++.|.++|+..-||+|+.+.|....-+. -.+..+-.+.||.. ++ .+-....++.||+-+|++++ +
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 3344 5678999999999999999999887442 34666555545411 00 01123456899999999887 3
Q ss_pred CE---EecCCCChHHHHH
Q 026661 210 GQ---VLSGEQDLSDLAK 224 (235)
Q Consensus 210 G~---~y~G~~~le~L~~ 224 (235)
++ .-.|.-+.++|.+
T Consensus 218 ~~~~pv~~G~iS~deL~~ 235 (248)
T PRK13703 218 GSVRPLSYGFITQDDLAK 235 (248)
T ss_pred CcEEEEeeccCCHHHHHH
Confidence 33 4679999999965
No 161
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.42 E-value=0.018 Score=45.97 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=57.6
Q ss_pred hHHHHHHhhcccceEEEecC----CCHHHHHHHHHhhHHhh-----ccCcEEEccCCCCCCchhhHHHhHhcCCCcccee
Q 026661 136 FALSLAKHLHAIGAKMYGAF----WCSHCLEQKQMFGSEAV-----KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 206 (235)
Q Consensus 136 ~~~~la~~L~~~gav~ygA~----WCphC~~~k~~f~k~A~-----~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw 206 (235)
.+++.|++=.+.-++.++.+ ||.-|+ ..|.++.. +++-.+-+|.++ .. -.+++...++++||++
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~---~~l~~~~v~~~ln~~fv~w~~dv~~-~e---g~~la~~l~~~~~P~~ 80 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCR---NTLCAPEVIEYINTRMLFWACSVAK-PE---GYRVSQALRERTYPFL 80 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHH---HHcCCHHHHHHHHcCEEEEEEecCC-hH---HHHHHHHhCCCCCCEE
Confidence 45566776666668888899 888884 45544321 223344555443 12 2578999999999998
Q ss_pred EE----CCE-----EecCCCChHHHHHHh
Q 026661 207 VI----NGQ-----VLSGEQDLSDLAKAS 226 (235)
Q Consensus 207 ~i----nG~-----~y~G~~~le~L~~~s 226 (235)
.+ +++ +++|..+.++|.+..
T Consensus 81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L 109 (116)
T cd02991 81 AMIMLKDNRMTIVGRLEGLIQPEDLINRL 109 (116)
T ss_pred EEEEecCCceEEEEEEeCCCCHHHHHHHH
Confidence 77 443 799999999998754
No 162
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.40 E-value=0.0042 Score=47.68 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=25.0
Q ss_pred HHHHHHhhcccceEEEecC-CCHHHHHHHHHhhH
Q 026661 137 ALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGS 169 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA~-WCphC~~~k~~f~k 169 (235)
.+.|++.-.+..++.|++. |||+|+++-+.+.+
T Consensus 17 ~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 17 TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred EEEHHHHCCCcEEEEEeCccCccccccchhHHHH
Confidence 3566666555667788888 99999998877766
No 163
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.36 E-value=0.0075 Score=51.02 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=22.8
Q ss_pred HHHHHHhhcccc--eEEEecCCCHHHHHHHHHhhH
Q 026661 137 ALSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 137 ~~~la~~L~~~g--av~ygA~WCphC~~~k~~f~k 169 (235)
.+.|++. +... +++|+|.|||.|++..|.+.+
T Consensus 32 ~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~ 65 (183)
T PTZ00256 32 LVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVE 65 (183)
T ss_pred EEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHH
Confidence 4566554 4433 346789999999998887775
No 164
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.29 E-value=0.0045 Score=49.28 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=26.0
Q ss_pred HHHHHHhhcccceEEEecCC-CHHHHHHHHHhhHH
Q 026661 137 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE 170 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA~W-CphC~~~k~~f~k~ 170 (235)
.+.|++.-.+..++.|++.| ||+|+.+.+.+.+.
T Consensus 18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~ 52 (143)
T cd03014 18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKE 52 (143)
T ss_pred EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 45666654556677889988 79999999988764
No 165
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=96.27 E-value=0.016 Score=41.15 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=40.6
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEEC-CEEe
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVL 213 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~in-G~~y 213 (235)
++|+.+|||+|++.+..+.+. ...+..++.+... + ..++-+......+|++..+ |+..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-gl~~e~~~v~~~~--~---~~~~~~~np~~~vP~L~~~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-GITVELREVELKN--K---PAEMLAASPKGTVPVLVLGNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-CCCcEEEEeCCCC--C---CHHHHHHCCCCCCCEEEECCCcEE
Confidence 579999999999999988763 2335567776532 1 1344455677889999995 7643
No 166
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.15 E-value=0.0066 Score=48.74 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=30.8
Q ss_pred HHHhHhcCCCccceeEECCEEecCCCChHHHHHHh
Q 026661 192 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 226 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~s 226 (235)
.+.+++.||++.||++|||+.+.|..++++|.++.
T Consensus 126 ~~~~~~~~i~~tPt~~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 126 SQLARQLGITGTPTFFINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp HHHHHHHT-SSSSEEEETTCEEETTTSHHHHHHHH
T ss_pred HHHHHHcCCccccEEEECCEEeCCCCCHHHHHHHH
Confidence 46678999999999999999999999999998864
No 167
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.07 E-value=0.026 Score=46.95 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=23.7
Q ss_pred HHHHHHhhcccceEEEe-cCCCHHHHHHHHHhhH
Q 026661 137 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 169 (235)
Q Consensus 137 ~~~la~~L~~~gav~yg-A~WCphC~~~k~~f~k 169 (235)
...|.+.-.+..++.|+ +.|||+|..+.+.+.+
T Consensus 21 ~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 21 EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHH
Confidence 45565543445566666 8999999999888766
No 168
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.024 Score=48.53 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=54.0
Q ss_pred eEEEecCCCHHHHHHHHHh-hHH----hh-ccCcEEEccCCC-----CCCch-----hhHHHhHhcCCCccceeEE---C
Q 026661 149 AKMYGAFWCSHCLEQKQMF-GSE----AV-KQLNYVECFPDG-----YRKGT-----KIAKACSDAKIEGFPTWVI---N 209 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f-~k~----A~-~~l~~Vec~~d~-----~n~~~-----k~~~lC~~~~I~gyPTw~i---n 209 (235)
..||..+-|+.|.++|... .+. +. ..+..++.+-.+ .+.|+ +.+++++.++||+.||+++ +
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~ 125 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKT 125 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCC
Confidence 6699999999999998643 331 11 223333222111 11121 2458999999999999998 5
Q ss_pred CE---EecCCCChHHHHHHhCC
Q 026661 210 GQ---VLSGEQDLSDLAKASGF 228 (235)
Q Consensus 210 G~---~y~G~~~le~L~~~sg~ 228 (235)
|+ .+.|-.+.|+......|
T Consensus 126 Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 126 GKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred CCEEEecCCCCCHHHHHHHHHH
Confidence 55 68999999998877766
No 169
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.0058 Score=49.85 Aligned_cols=63 Identities=22% Similarity=0.428 Sum_probs=38.0
Q ss_pred cCCCHHHHHHHHHhhHH---hhccCcEEEccCCCCCCc--hhhHHHhHhcCC-CccceeEE-C--CEEecCCC
Q 026661 154 AFWCSHCLEQKQMFGSE---AVKQLNYVECFPDGYRKG--TKIAKACSDAKI-EGFPTWVI-N--GQVLSGEQ 217 (235)
Q Consensus 154 A~WCphC~~~k~~f~k~---A~~~l~~Vec~~d~~n~~--~k~~~lC~~~~I-~gyPTw~i-n--G~~y~G~~ 217 (235)
-+|||+|....|.+.+. +.++..+|.|+... ++- ++....=++.++ .++||+.- + +++..|.|
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~-rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q 113 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN-RPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQ 113 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC-CCcccCCCCccccCCCceeecceeeEEcCccccchHhH
Confidence 36999999999999873 33566677775421 110 111122345666 99999876 4 23555543
No 170
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.80 E-value=0.022 Score=44.88 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=37.7
Q ss_pred HHHHHhhc-ccceE-EEecCCCHHHHHHHHHhhHHh--h--ccCcEEEccCCCCCCchhhHHHhHhcCCCccce
Q 026661 138 LSLAKHLH-AIGAK-MYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 205 (235)
Q Consensus 138 ~~la~~L~-~~gav-~ygA~WCphC~~~k~~f~k~A--~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPT 205 (235)
+.+.+... +..++ +|.++|||.|+++.+.+.+.. + ..+..|-+..|... ...+..++.++ .||.
T Consensus 15 ~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~~~~~-~~p~ 84 (149)
T cd02970 15 VTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE---KLEAFDKGKFL-PFPV 84 (149)
T ss_pred EchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHHhcCC-CCeE
Confidence 44555553 33334 456999999999999887632 2 34556655544311 13345666666 5774
No 171
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=95.77 E-value=0.045 Score=36.50 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=41.5
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecC
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG 215 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G 215 (235)
++|+.++||+|++.+..+... ......++++.+.... .++-+..+-..+|++..+|+.+..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-~i~~~~~~~~~~~~~~----~~~~~~~~~~~~P~l~~~~~~~~e 62 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-GLPYELVPVDLGEGEQ----EEFLALNPLGKVPVLEDGGLVLTE 62 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEeCCCCCCC----HHHHhcCCCCCCCEEEECCEEEEc
Confidence 578999999999999988763 2334566766542111 123345677889999999876543
No 172
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.72 E-value=0.035 Score=47.92 Aligned_cols=90 Identities=12% Similarity=0.063 Sum_probs=52.5
Q ss_pred HHHHHHhhcccceE-EEecCCCHHHHHHHHHhhHHh--h--ccCcEEEccCCCC------------CCc---------hh
Q 026661 137 ALSLAKHLHAIGAK-MYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGY------------RKG---------TK 190 (235)
Q Consensus 137 ~~~la~~L~~~gav-~ygA~WCphC~~~k~~f~k~A--~--~~l~~Vec~~d~~------------n~~---------~k 190 (235)
.++|.++-.+..++ +|.+.|||.|....+.|.+.. + .++..|-+..|.. +.+ ..
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~ 98 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADI 98 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECC
Confidence 35677763333333 589999999999887776521 1 1222222111100 000 01
Q ss_pred hHHHhHhcCCC------ccceeEE---CCE-E------ecCCCChHHHHHHh
Q 026661 191 IAKACSDAKIE------GFPTWVI---NGQ-V------LSGEQDLSDLAKAS 226 (235)
Q Consensus 191 ~~~lC~~~~I~------gyPTw~i---nG~-~------y~G~~~le~L~~~s 226 (235)
..++++++|+. .+|+.+| +|+ + ..+.|+.+|+.+..
T Consensus 99 ~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l 150 (202)
T PRK13190 99 DKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT 150 (202)
T ss_pred ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 24778889984 5899776 676 2 25678999997765
No 173
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.66 E-value=0.011 Score=49.20 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=25.7
Q ss_pred HHHHHHhhcccceEEEecCC-CHHHHHHHHHhhHH
Q 026661 137 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE 170 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA~W-CphC~~~k~~f~k~ 170 (235)
.+.+++.-.+..++.|++.| ||.|..+.+.|.+.
T Consensus 36 ~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 36 DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQE 70 (167)
T ss_pred EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHH
Confidence 35666643445677899999 99999998888763
No 174
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.42 E-value=0.12 Score=38.24 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=52.8
Q ss_pred eEEEecCCCHHHHHHHHHhhHHh-hcc--CcEEEccCCCCCCchhhHHHhHhcCCCccceeEECC-------EEecCCCC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEA-VKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING-------QVLSGEQD 218 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A-~~~--l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG-------~~y~G~~~ 218 (235)
..+|+.+-|+=|.+.++++.+.. ... +..||.+.| +++-.+|+. .+|-+.++| +...+.-+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d--------~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED--------PELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT--------HHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC--------HHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 57899999999999999998732 223 557777743 367789996 799999966 57888889
Q ss_pred hHHHHHHh
Q 026661 219 LSDLAKAS 226 (235)
Q Consensus 219 le~L~~~s 226 (235)
.++|.++.
T Consensus 73 ~~~L~~~L 80 (81)
T PF05768_consen 73 EEQLRAWL 80 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 175
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.41 E-value=0.056 Score=38.10 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=37.9
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEEC-CEEecCC
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVLSGE 216 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~in-G~~y~G~ 216 (235)
+.|+.++||+|++.+..+... ...+..++.+.+. . ...-+..+-...|+++.+ |+...+.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~-gl~~~~~~~~~~~--~----~~~~~~~~~~~vP~L~~~~~~~l~es 62 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLK-NIPVEQIILQNDD--E----ATPIRMIGAKQVPILEKDDGSFMAES 62 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHc-CCCeEEEECCCCc--h----HHHHHhcCCCccCEEEeCCCeEeehH
Confidence 578899999999999998863 2223445555432 1 111233455679999886 7654443
No 176
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.29 E-value=0.024 Score=45.09 Aligned_cols=33 Identities=6% Similarity=0.051 Sum_probs=23.2
Q ss_pred HHHHHHhhc-ccceEEEe-cCCCHHHHHHHHHhhH
Q 026661 137 ALSLAKHLH-AIGAKMYG-AFWCSHCLEQKQMFGS 169 (235)
Q Consensus 137 ~~~la~~L~-~~gav~yg-A~WCphC~~~k~~f~k 169 (235)
.+.+.+... +.-++.|+ +.|||.|..+.+.+.+
T Consensus 19 ~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 19 EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence 466766544 34455555 9999999998887765
No 177
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=95.23 E-value=0.056 Score=37.61 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=39.1
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE-CCEE
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 212 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-nG~~ 212 (235)
++|+.+|||+|++.+..+... ......++++..+... +..+.-+...-..+|++.+ ||+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~-~l~~~~~~v~~~~~~~--~~~~~~~~~p~~~vP~l~~~~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK-GIDVPLVTVDLAAGEQ--RSPEFLAKNPAGTVPVLELDDGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc-CCCceEEEeecccCcc--CCHHHHhhCCCCCCCEEEeCCCCE
Confidence 689999999999999988763 2234456665421111 1234445566678999998 5553
No 178
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=95.22 E-value=0.062 Score=46.19 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=51.5
Q ss_pred hHHHHHHhhcccceEEEe-cCCCHHHHHHHHHhhHHh--h--ccCcEEEccCCCCCC------------ch-------hh
Q 026661 136 FALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRK------------GT-------KI 191 (235)
Q Consensus 136 ~~~~la~~L~~~gav~yg-A~WCphC~~~k~~f~k~A--~--~~l~~Vec~~d~~n~------------~~-------k~ 191 (235)
..++|++...+..++.|+ +.|||.|..+-+.|.+.. + .++..+-++.|.... +- +.
T Consensus 22 ~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~ 101 (187)
T PRK10382 22 IEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPT 101 (187)
T ss_pred eEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCc
Confidence 344555544444566667 999999999887776531 1 112222221111000 00 02
Q ss_pred HHHhHhcCC----Ccc--ceeEE---CCE---E----ecCCCChHHHHHHh
Q 026661 192 AKACSDAKI----EGF--PTWVI---NGQ---V----LSGEQDLSDLAKAS 226 (235)
Q Consensus 192 ~~lC~~~~I----~gy--PTw~i---nG~---~----y~G~~~le~L~~~s 226 (235)
.++++++|+ .+. |+.+| +|+ . ....++.+++.+..
T Consensus 102 ~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l 152 (187)
T PRK10382 102 GALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 152 (187)
T ss_pred hHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 478899998 467 88665 676 1 23447888887755
No 179
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.16 E-value=0.038 Score=49.50 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=30.9
Q ss_pred HHHhHhcCCCccceeEE-C--CE--EecCCCChHHHHHHhC
Q 026661 192 AKACSDAKIEGFPTWVI-N--GQ--VLSGEQDLSDLAKASG 227 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~i-n--G~--~y~G~~~le~L~~~sg 227 (235)
.++.++.||+|.||+++ | |+ ...|..+.++|.++.|
T Consensus 209 ~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 209 QKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 34677899999999999 5 65 6899999999999876
No 180
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=95.15 E-value=0.03 Score=46.36 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=31.2
Q ss_pred HHHhHhcCCCccceeEECCEEecCCCChHHHHHHhC
Q 026661 192 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 227 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~sg 227 (235)
.+...+.||.|.||++|||+.+.|...++.|.+..+
T Consensus 157 ~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~~~l~ 192 (192)
T cd03022 157 TEEAIARGVFGVPTFVVDGEMFWGQDRLDMLEEALA 192 (192)
T ss_pred HHHHHHcCCCcCCeEEECCeeecccccHHHHHHHhC
Confidence 345668899999999999999999999999987654
No 181
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.05 E-value=0.084 Score=44.81 Aligned_cols=33 Identities=6% Similarity=-0.012 Sum_probs=23.6
Q ss_pred HHHHHHhhcccceEEEe-cCCCHHHHHHHHHhhH
Q 026661 137 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 169 (235)
Q Consensus 137 ~~~la~~L~~~gav~yg-A~WCphC~~~k~~f~k 169 (235)
.+.+.+.-.+..++.|+ +.|||+|..+.+.|.+
T Consensus 23 ~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~ 56 (187)
T TIGR03137 23 EVTDEDVKGKWSVFFFYPADFTFVCPTELEDLAD 56 (187)
T ss_pred EecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHH
Confidence 34555543445566777 9999999999888765
No 182
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=94.79 E-value=0.12 Score=36.31 Aligned_cols=61 Identities=18% Similarity=-0.020 Sum_probs=40.6
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEE
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 212 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~ 212 (235)
.++|+.++||+|++.+-.+... ......++++... +..+..++-+...-..+|++..+|..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKAL-GLELNLKEVNLMK--GEHLKPEFLKLNPQHTVPTLVDNGFV 61 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHc-CCCCEEEEecCcc--CCcCCHHHHhhCcCCCCCEEEECCEE
Confidence 3689999999999998888763 2335566666421 11113455555666789999888764
No 183
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.64 E-value=0.067 Score=41.11 Aligned_cols=49 Identities=8% Similarity=0.198 Sum_probs=31.5
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 199 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~ 199 (235)
+++|+.++||.|++.+..+.+. .-.+.++|...+. .......++..+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~-~~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-GIEYEFIDYLKEP-PTKEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCCcEEEeeccCC-CCHHHHHHHHHhcC
Confidence 3689999999999999999873 2334566665443 22223444554444
No 184
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.63 E-value=0.062 Score=42.17 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=30.4
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 200 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I 200 (235)
+++|+-++||.|++.+.++.+. .-.+.++|...+. .......++..+.++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~-~~~~el~~~~~~~~~ 50 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH-GVDYTAIDIVEEP-PSKEELKKWLEKSGL 50 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCceEEecccCCc-ccHHHHHHHHHHcCC
Confidence 3689999999999999999873 1223345554432 121223445555543
No 185
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=94.22 E-value=0.12 Score=44.58 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=22.9
Q ss_pred HHHHHhhccc-c-eEEEecCCCHHHHHHHHHhhH
Q 026661 138 LSLAKHLHAI-G-AKMYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 138 ~~la~~L~~~-g-av~ygA~WCphC~~~k~~f~k 169 (235)
+.|++...+. . ..+|.|.|||.|..+.+.|.+
T Consensus 17 ~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~ 50 (203)
T cd03016 17 IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAK 50 (203)
T ss_pred EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHH
Confidence 5666654422 2 337999999999999887766
No 186
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=94.19 E-value=0.25 Score=34.52 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=38.3
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEE
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 212 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~ 212 (235)
.+.|+.++||.|++.+..+.+. .-....++.+.+. . .++.-+...-..+|++..+|..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~-gi~~~~~~v~~~~--~---~~~~~~~~p~~~vP~l~~~~~~ 58 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK-GVSVEIIDVDPDN--P---PEDLAELNPYGTVPTLVDRDLV 58 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc-CCccEEEEcCCCC--C---CHHHHhhCCCCCCCEEEECCEE
Confidence 3679999999999999988763 2223345555432 1 2344455667789999877754
No 187
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.15 E-value=0.068 Score=41.80 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=32.3
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 199 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~ 199 (235)
+++|+-|||+.|++.+..+.+. ...+.++|...+.. ......++.++.|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-~i~~~~~di~~~p~-s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-GVAYTFHDYRKDGL-DAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCCeEEEecccCCC-CHHHHHHHHHHhC
Confidence 4689999999999999999863 22344555543321 2223566676666
No 188
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=94.10 E-value=0.067 Score=44.19 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=30.8
Q ss_pred HHHhHhcCCCccceeEECCE-EecCCCChHHHHHHh
Q 026661 192 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 226 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~inG~-~y~G~~~le~L~~~s 226 (235)
.+...+.||.|+||+++||+ .+.|.+++++|.+..
T Consensus 157 ~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVVNGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSSSEEEETTTEEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCcccCEEEECCEEEEECCCCHHHHHHHh
Confidence 35567899999999999999 999999999998753
No 189
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=93.88 E-value=0.3 Score=34.96 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=43.5
Q ss_pred EEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCC
Q 026661 151 MYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 216 (235)
Q Consensus 151 ~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~ 216 (235)
.|+.+|||.|++..-.+... .-...+++++...+ ..++.+...-..+|++..||+.+...
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-~i~~~~~~v~~~~~-----~~~~~~~~p~~~vPvL~~~g~~l~dS 60 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-GIPYELVPVDPEEK-----RPEFLKLNPKGKVPVLVDDGEVLTDS 60 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-TEEEEEEEEBTTST-----SHHHHHHSTTSBSSEEEETTEEEESH
T ss_pred CCCcCCChHHHHHHHHHHHc-CCeEEEeccCcccc-----hhHHHhhcccccceEEEECCEEEeCH
Confidence 48899999999999888763 23445677765432 24666677888899999998865543
No 190
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=93.84 E-value=0.22 Score=35.50 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=35.7
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEEC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 209 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~in 209 (235)
++.|+.+.||.|++.+..+.. +.++ .++.+.. + ..++ +..+-..+|++..+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~---~gi~y~~~~~~~~--~----~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDY---HGIPYEVVEVNPV--S----RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHH---CCCceEEEECCch--h----HHHH-HHhCCCccCEEEEC
Confidence 578999999999999988876 3444 4554432 1 1233 44677889999986
No 191
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.33 Score=43.70 Aligned_cols=66 Identities=15% Similarity=0.354 Sum_probs=46.8
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhh----cc--CcEEEccCCCCCCchhhHHHhHhcCC------Cccce
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV----KQ--LNYVECFPDGYRKGTKIAKACSDAKI------EGFPT 205 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~----~~--l~~Vec~~d~~n~~~k~~~lC~~~~I------~gyPT 205 (235)
.++.+.=+..=.+.|+|-|-|.|++..|.|.+... .. +..||... +++..++++| +-.||
T Consensus 137 eel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr--------fpd~a~kfris~s~~srQLPT 208 (265)
T KOG0914|consen 137 EELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR--------FPDVAAKFRISLSPGSRQLPT 208 (265)
T ss_pred HHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc--------CcChHHheeeccCcccccCCe
Confidence 34555545555788999999999999999998542 12 34566643 4566777777 45899
Q ss_pred eEE--CCE
Q 026661 206 WVI--NGQ 211 (235)
Q Consensus 206 w~i--nG~ 211 (235)
.++ +|+
T Consensus 209 ~ilFq~gk 216 (265)
T KOG0914|consen 209 YILFQKGK 216 (265)
T ss_pred EEEEccch
Confidence 887 776
No 192
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=93.47 E-value=0.12 Score=40.68 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=38.9
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE-CCEEecC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQVLSG 215 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-nG~~y~G 215 (235)
+++|+-++||+|++.+..+.+. .-.+.++|...+. .......++.++.|. ++=.++= +|+.|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~-~~~~el~~l~~~~~~-~~~~lin~~~~~~k~ 65 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN-GIEYQFIDIGEDG-PTREELLDILSLLED-GIDPLLNTRGQSYRA 65 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCceEEEecCCCh-hhHHHHHHHHHHcCC-CHHHheeCCCcchhh
Confidence 3689999999999999999873 2234556665432 222234555666663 2322333 6766554
No 193
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=93.41 E-value=0.22 Score=42.56 Aligned_cols=90 Identities=8% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHhhcccceEEEec-CCCHHHHHHHHHhhHHh--h--ccCcE--EEccCCCC-------CC------c-------h
Q 026661 137 ALSLAKHLHAIGAKMYGA-FWCSHCLEQKQMFGSEA--V--KQLNY--VECFPDGY-------RK------G-------T 189 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA-~WCphC~~~k~~f~k~A--~--~~l~~--Vec~~d~~-------n~------~-------~ 189 (235)
.++|.+...+..+++|++ .|||+|......+.+.+ + .++.. |.+|.... .+ + .
T Consensus 28 ~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D 107 (199)
T PTZ00253 28 KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLAD 107 (199)
T ss_pred EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEEC
Confidence 467777666667778874 88999998877776532 1 23333 33332110 00 0 0
Q ss_pred hhHHHhHhcCCC------ccceeEE---CCE-E------ecCCCChHHHHHHh
Q 026661 190 KIAKACSDAKIE------GFPTWVI---NGQ-V------LSGEQDLSDLAKAS 226 (235)
Q Consensus 190 k~~~lC~~~~I~------gyPTw~i---nG~-~------y~G~~~le~L~~~s 226 (235)
+..++++.+|+. .+|+.+| +|+ + ..-.|+.+++.+..
T Consensus 108 ~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l 160 (199)
T PTZ00253 108 KTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLL 160 (199)
T ss_pred cHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 124788899985 4788765 665 1 14457877776654
No 194
>PRK15000 peroxidase; Provisional
Probab=92.95 E-value=0.29 Score=42.30 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=52.5
Q ss_pred HHHHHHhhcc-cceEEEec-CCCHHHHHHHHHhhHHh--h--ccCcEEEccCCCCCC------------c----------
Q 026661 137 ALSLAKHLHA-IGAKMYGA-FWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRK------------G---------- 188 (235)
Q Consensus 137 ~~~la~~L~~-~gav~ygA-~WCphC~~~k~~f~k~A--~--~~l~~Vec~~d~~n~------------~---------- 188 (235)
..+|.+..+. .-+++|++ .|||.|..+.+.|.+.. + .++..+-+..|.... +
T Consensus 25 ~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fplls 104 (200)
T PRK15000 25 KFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVA 104 (200)
T ss_pred eeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEE
Confidence 4566666444 44667778 59999999988776631 1 122222222111000 0
Q ss_pred hhhHHHhHhcCCC------ccceeEE---CCE---E----ecCCCChHHHHHHh
Q 026661 189 TKIAKACSDAKIE------GFPTWVI---NGQ---V----LSGEQDLSDLAKAS 226 (235)
Q Consensus 189 ~k~~~lC~~~~I~------gyPTw~i---nG~---~----y~G~~~le~L~~~s 226 (235)
....++++++|+. ++|+.++ +|+ . ..-.|+.+|+.+..
T Consensus 105 D~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l 158 (200)
T PRK15000 105 DVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMV 158 (200)
T ss_pred CCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 0123678889988 7898666 676 2 23457888887765
No 195
>PRK13189 peroxiredoxin; Provisional
Probab=92.93 E-value=0.25 Score=43.37 Aligned_cols=89 Identities=9% Similarity=0.062 Sum_probs=50.9
Q ss_pred HHHHHhhccc-ce-EEEecCCCHHHHHHHHHhhHHh--h--ccCcEEEccCCCCCC------------c---------hh
Q 026661 138 LSLAKHLHAI-GA-KMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRK------------G---------TK 190 (235)
Q Consensus 138 ~~la~~L~~~-ga-v~ygA~WCphC~~~k~~f~k~A--~--~~l~~Vec~~d~~n~------------~---------~k 190 (235)
+.+.++++.. .+ .+|.|.|||.|....+.|.+.+ + .++..|-+..|.... + ..
T Consensus 27 ~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~ 106 (222)
T PRK13189 27 IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADD 106 (222)
T ss_pred EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcC
Confidence 5677765554 33 3788999999999877776532 1 122222221111000 0 00
Q ss_pred hHHHhHhcCCC-------ccceeEE---CCE---E----ecCCCChHHHHHHh
Q 026661 191 IAKACSDAKIE-------GFPTWVI---NGQ---V----LSGEQDLSDLAKAS 226 (235)
Q Consensus 191 ~~~lC~~~~I~-------gyPTw~i---nG~---~----y~G~~~le~L~~~s 226 (235)
..++++++|+. ..|+.+| +|+ . ....|+.+++.++.
T Consensus 107 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l 159 (222)
T PRK13189 107 RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLV 159 (222)
T ss_pred ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence 23678888876 4676555 676 1 23667888887765
No 196
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=92.83 E-value=0.2 Score=39.29 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHHHHhhcccceEEEecCCCHH-HHHHHHHhhH
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSH-CLEQKQMFGS 169 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCph-C~~~k~~f~k 169 (235)
+.+.+.-.+.-++.|+++|||. |..+.+.+.+
T Consensus 15 ~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 15 VTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EchHHhCCCEEEEEEEcCCCcccCHHHHHHHHH
Confidence 3455442344577899999997 9988887766
No 197
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=92.73 E-value=0.17 Score=39.62 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=22.2
Q ss_pred HHHHhhcccceEEEe-cCCCHHHHHHHHHhhH
Q 026661 139 SLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 169 (235)
Q Consensus 139 ~la~~L~~~gav~yg-A~WCphC~~~k~~f~k 169 (235)
.+.+.-.+.-++.|+ +.|||+|..+.+.+.+
T Consensus 16 ~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 16 SLSDFKGKWVVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred ehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHH
Confidence 444443455566777 7899999999887766
No 198
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=92.57 E-value=0.21 Score=40.24 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=21.2
Q ss_pred HHHHHHhhcccceEEEec-CCCHHHHHHHHHhhH
Q 026661 137 ALSLAKHLHAIGAKMYGA-FWCSHCLEQKQMFGS 169 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA-~WCphC~~~k~~f~k 169 (235)
...|+.+-.+..++.|++ .|||+|..+.+.+.+
T Consensus 22 ~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~ 55 (154)
T PRK09437 22 QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRD 55 (154)
T ss_pred EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 356666433344566665 589999988766654
No 199
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=92.56 E-value=0.19 Score=42.00 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=29.8
Q ss_pred HHHhHhcCCCccceeEECCE-EecCCCChHHHHHHh
Q 026661 192 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 226 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~inG~-~y~G~~~le~L~~~s 226 (235)
.+...+.||.|.||+++||+ ...|.++.+.+.+..
T Consensus 165 ~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 35567889999999999987 789999999998754
No 200
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=92.25 E-value=0.27 Score=39.88 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=29.8
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhc
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA 198 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~ 198 (235)
+++|+-+|||.|++.+..+.+. .-.+..+|...+. .......++.++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-gi~~~~idi~~~~-~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-DIPFTERNIFSSP-LTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCcEEeeccCCh-hhHHHHHHHHHHh
Confidence 5789999999999999999763 2233445554332 1112244445554
No 201
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=92.25 E-value=0.28 Score=42.17 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHHHHHhhcccceEEEecCCCHHHHHHHHHhhHHh--h--ccCc--EEEccC---CCCCCchhhHHHhH-hcCCCcccee
Q 026661 137 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLN--YVECFP---DGYRKGTKIAKACS-DAKIEGFPTW 206 (235)
Q Consensus 137 ~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A--~--~~l~--~Vec~~---d~~n~~~k~~~lC~-~~~I~gyPTw 206 (235)
.+.|+++-.+.-++.|+|+||+.|++ -+.+.+.. + +.+. -|.|+. .+..+.....+.|+ ++|+ .||-+
T Consensus 17 ~v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~ 94 (183)
T PRK10606 17 VTTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMF 94 (183)
T ss_pred EEeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeE
Confidence 45677765566678999999999974 44554421 1 2343 456642 00011123567786 6887 58976
Q ss_pred E---ECCE
Q 026661 207 V---INGQ 211 (235)
Q Consensus 207 ~---inG~ 211 (235)
. +||+
T Consensus 95 ~k~dvnG~ 102 (183)
T PRK10606 95 SKIEVNGE 102 (183)
T ss_pred EEEccCCC
Confidence 3 3775
No 202
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.14 Score=45.81 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=51.4
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHh--hccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCCCChH
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLS 220 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A--~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~~~le 220 (235)
-.+-|+|+||..|+.+++.+...+ .++..++..+.++ ..++|....|.+.|+..+ +|+ +..|....+
T Consensus 20 ~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~------~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 20 LVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEE------FPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhh------hhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 356799999999999999998743 2455666666554 679999999999999887 565 566665544
Q ss_pred H
Q 026661 221 D 221 (235)
Q Consensus 221 ~ 221 (235)
.
T Consensus 94 ~ 94 (227)
T KOG0911|consen 94 L 94 (227)
T ss_pred H
Confidence 3
No 203
>PRK13599 putative peroxiredoxin; Provisional
Probab=91.72 E-value=0.64 Score=40.75 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=17.1
Q ss_pred EEEecCCCHHHHHHHHHhhH
Q 026661 150 KMYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k 169 (235)
..|.|.|||.|...-+.|.+
T Consensus 34 ~~~pa~~tpvCt~El~~l~~ 53 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFAR 53 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHH
Confidence 58999999999998777765
No 204
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.34 Score=36.74 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=46.5
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCC--------chhhHHHhHhcCCCccceeEE-CCEEecC
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRK--------GTKIAKACSDAKIEGFPTWVI-NGQVLSG 215 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~--------~~k~~~lC~~~~I~gyPTw~i-nG~~y~G 215 (235)
++||+--||+|...++.+.+. .-+.++||......|= ..+.-+-.+..|--|+|.+.. ||+..-|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 899999999999999999885 2456678886443221 011234456778889999999 7876666
No 205
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=91.51 E-value=0.78 Score=34.06 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=40.1
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEEC-CEE
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 212 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~in-G~~ 212 (235)
.+.|+.+.||+|++.+-.+... ...+..++++.+. . ..++-+...-..+|++.++ |+.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-gl~~~~~~v~~~~--~---~~~~~~~np~~~vPvL~~~~g~~ 77 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-NIPHEVININLKD--K---PDWFLEKNPQGKVPALEIDEGKV 77 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-CCCCeEEEeCCCC--C---cHHHHhhCCCCCcCEEEECCCCE
Confidence 7789999999999999888763 2234556665432 1 1234455667789999996 654
No 206
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.49 E-value=0.9 Score=32.67 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=35.5
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcE--EEccCCCCCCchhhHHHhHhcCCCccceeEE
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI 208 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~--Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i 208 (235)
.+.|+.++||+|++.+..+.+. .++| ++++++. . +..+.-+..+-..+|+++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~---gi~y~~~~v~~~~-~---~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL---ELDVILYPCPKGS-P---KRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc---CCcEEEEECCCCh-H---HHHHHHHhCCCCcccEEEe
Confidence 4689999999999999888763 3444 6664321 1 1234434456678999987
No 207
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=90.91 E-value=1 Score=31.15 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=38.5
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEe
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 213 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y 213 (235)
+.|+-+.||+|++.+-.+... ....+.++.+... ...+..+.-+...-..+|++..+|+..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL-GIPYEWVEVDILK--GETRTPEFLALNPNGEVPVLELDGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEecCCC--cccCCHHHHHhCCCCCCCEEEECCEEE
Confidence 578899999999998888762 2234455555321 011123444445566799999988643
No 208
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.81 E-value=0.49 Score=37.16 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=31.3
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 199 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~ 199 (235)
+++|+-++||.|++.+..+.+. ...+.++|...+. .......++.++.|
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-gi~~~~idi~~~~-~~~~el~~~~~~~~ 50 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-QIPFEERNLFKQP-LTKEELKEILSLTE 50 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-CCceEEEecCCCc-chHHHHHHHHHHhc
Confidence 5789999999999999999873 2234456664432 12222444555443
No 209
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.70 E-value=0.25 Score=42.53 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=26.2
Q ss_pred HHhHhcCCCccceeEECCEEecCCC---------ChHHHHHHhCC
Q 026661 193 KACSDAKIEGFPTWVINGQVLSGEQ---------DLSDLAKASGF 228 (235)
Q Consensus 193 ~lC~~~~I~gyPTw~inG~~y~G~~---------~le~L~~~sg~ 228 (235)
+..+++||+|.||++|||+...+.+ +.+++.+..+|
T Consensus 158 ~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~ 202 (207)
T PRK10954 158 KAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKF 202 (207)
T ss_pred HHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHHH
Confidence 4457789999999999999654433 45677766654
No 210
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=90.21 E-value=1.3 Score=40.24 Aligned_cols=90 Identities=7% Similarity=0.015 Sum_probs=52.1
Q ss_pred HHHHHHhhcccc-eEEE-ecCCCHHHHHHHHHhhHHh--h--ccCcEEEccCCCC-------C--------Cc-------
Q 026661 137 ALSLAKHLHAIG-AKMY-GAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGY-------R--------KG------- 188 (235)
Q Consensus 137 ~~~la~~L~~~g-av~y-gA~WCphC~~~k~~f~k~A--~--~~l~~Vec~~d~~-------n--------~~------- 188 (235)
.+.|.++++... +.+| .+.|||.|..+.+.|.+.. + ..+..+-+..|.. + .+
T Consensus 89 ~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLs 168 (261)
T PTZ00137 89 QFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFS 168 (261)
T ss_pred EEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEE
Confidence 467777755533 3344 4899999999888776521 1 1122221111110 0 00
Q ss_pred hhhHHHhHhcCCC-----ccceeEE---CCE-------EecCCCChHHHHHHh
Q 026661 189 TKIAKACSDAKIE-----GFPTWVI---NGQ-------VLSGEQDLSDLAKAS 226 (235)
Q Consensus 189 ~k~~~lC~~~~I~-----gyPTw~i---nG~-------~y~G~~~le~L~~~s 226 (235)
.+..++++++|+. ..|+.+| +|+ .....|+.+|+.+..
T Consensus 169 D~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l 221 (261)
T PTZ00137 169 DISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLF 221 (261)
T ss_pred cCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 0024788999985 4788666 676 135568998888755
No 211
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.06 E-value=0.37 Score=39.20 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=23.8
Q ss_pred HHHhHhcCCCccceeEECCEEecCCCChH
Q 026661 192 AKACSDAKIEGFPTWVINGQVLSGEQDLS 220 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~inG~~y~G~~~le 220 (235)
.+.+++.||.|.||++|||+.+.+.++.+
T Consensus 133 ~~~~~~~gi~gTPt~iInG~~~~~~~~~~ 161 (178)
T cd03019 133 EKLAKKYKITGVPAFVVNGKYVVNPSAIG 161 (178)
T ss_pred HHHHHHcCCCCCCeEEECCEEEEChhhcc
Confidence 45678899999999999999777766544
No 212
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.47 Score=41.21 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=31.9
Q ss_pred hHHHhHhcCCCccceeEECCEEecCCCChHHHHHHh
Q 026661 191 IAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 226 (235)
Q Consensus 191 ~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~s 226 (235)
..++.++.||+|-||+++||+.+.|..++++|.+..
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~~~~~g~~~~~~l~~~i 239 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNGKLVPGLPDLDELKAII 239 (244)
T ss_pred HHHHHHhcCCCcCCeEEECCeeecCCCCHHHHHHHH
Confidence 456778899999999999999999999999998765
No 213
>PRK12559 transcriptional regulator Spx; Provisional
Probab=89.92 E-value=0.65 Score=37.77 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=24.7
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 183 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d 183 (235)
+++|+-++|+.|++.+..+.+. .-...++|...+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCeEEEEeeCC
Confidence 5799999999999999999863 223344555444
No 214
>PRK13191 putative peroxiredoxin; Provisional
Probab=88.05 E-value=1.5 Score=38.38 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=22.4
Q ss_pred HHHHHhhccc-ceE-EEecCCCHHHHHHHHHhhH
Q 026661 138 LSLAKHLHAI-GAK-MYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 138 ~~la~~L~~~-gav-~ygA~WCphC~~~k~~f~k 169 (235)
..+.+.++.. .++ +|.|.|||.|....+.|.+
T Consensus 25 ~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~ 58 (215)
T PRK13191 25 IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAK 58 (215)
T ss_pred EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHH
Confidence 3454444443 343 7899999999998887766
No 215
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=87.50 E-value=2.6 Score=31.88 Aligned_cols=45 Identities=9% Similarity=-0.155 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHhcccchHHHHHHhhHHHHHHHHHHHHHHhhcCC
Q 026661 64 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSS 109 (235)
Q Consensus 64 ~Sa~lS~~L~~l~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 109 (235)
.++++.+..-++...|.+|++..+. ..+++-+++++++++++..+
T Consensus 17 i~al~l~~q~v~~~fG~~~~~~~~~-l~~~i~~v~~lL~~lGii~D 61 (78)
T TIGR01598 17 LGALFLAIQSILDNFGVLWLSFNRQ-LNAPIAAITTILAVVGIIMD 61 (78)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHHHHHHheecC
Confidence 3444444455677889999976553 34444445555565656665
No 216
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=86.31 E-value=1.4 Score=35.78 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=30.2
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 199 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~ 199 (235)
+++|+-++|+.|++.+..+.+. ...+.++|...+.... ....++.++.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-~i~~~~~d~~~~~~s~-~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-QLSYKEQNLGKEPLTK-EEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-CCCeEEEECCCCCCCH-HHHHHHHHHhC
Confidence 5689999999999999999863 2233445554333211 22445555544
No 217
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.86 E-value=1.3 Score=39.58 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=27.0
Q ss_pred HHhHhcCCCccceeEEC-CEEecCCCChHHHHHH
Q 026661 193 KACSDAKIEGFPTWVIN-GQVLSGEQDLSDLAKA 225 (235)
Q Consensus 193 ~lC~~~~I~gyPTw~in-G~~y~G~~~le~L~~~ 225 (235)
...++.||+|.||++++ |-..+|.++.+.|...
T Consensus 175 ~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~a 208 (225)
T COG2761 175 AAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDA 208 (225)
T ss_pred HHHHHCCCccCceEEEcCcEeecCCCCHHHHHHH
Confidence 34678999999999994 5599999999877643
No 218
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=82.58 E-value=2.1 Score=33.93 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.6
Q ss_pred ceEEEecCCCHHHHHHHHHhhH
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k 169 (235)
+++.|+-|.|+.|++.+..+.+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHH
Confidence 3678999999999999999876
No 219
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=81.05 E-value=5 Score=30.75 Aligned_cols=62 Identities=6% Similarity=-0.046 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhc----CCCccceeEECCEEecCCCChHHHHH
Q 026661 158 SHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA----KIEGFPTWVINGQVLSGEQDLSDLAK 224 (235)
Q Consensus 158 phC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~----~I~gyPTw~inG~~y~G~~~le~L~~ 224 (235)
.+|++.+.++.. ++++|-|+|.+. +++. ..++-+.. |-+..|-+++||+...|-.++.+|.+
T Consensus 17 ~~~~~v~~lL~~---k~I~f~eiDI~~-d~~~-r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~e 82 (92)
T cd03030 17 KRQQEVLGFLEA---KKIEFEEVDISM-NEEN-RQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAKE 82 (92)
T ss_pred HHHHHHHHHHHH---CCCceEEEecCC-CHHH-HHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHHh
Confidence 378888888876 467776665542 2211 22322332 45788989999987777766666543
No 220
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=81.04 E-value=0.45 Score=44.46 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=51.8
Q ss_pred HHhh--cccceEEEecCCCHHHHHHHHHhhHHh--hccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE-CCE---E
Q 026661 141 AKHL--HAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQ---V 212 (235)
Q Consensus 141 a~~L--~~~gav~ygA~WCphC~~~k~~f~k~A--~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-nG~---~ 212 (235)
+.|. -..-.+.|||.|||--+..++.|.-.. +..+.-.-.+ + .. +.++...++++.+.|+..+ |-. +
T Consensus 70 ~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~ve-e-~~---~lpsv~s~~~~~~~ps~~~~n~t~~~~ 144 (319)
T KOG2640|consen 70 AIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVE-E-SQ---ALPSVFSSYGIHSEPSNLMLNQTCPAS 144 (319)
T ss_pred hhccccCCcccccchhcccCcccccCcccchhhhhccccccccHH-H-Hh---hcccchhccccccCCcceeeccccchh
Confidence 5666 334466899999996666666665421 1112211111 1 11 1356678899999999888 543 8
Q ss_pred ecCCCChHHHHHH
Q 026661 213 LSGEQDLSDLAKA 225 (235)
Q Consensus 213 y~G~~~le~L~~~ 225 (235)
|-|.++++.|+++
T Consensus 145 ~~~~r~l~sLv~f 157 (319)
T KOG2640|consen 145 YRGERDLASLVNF 157 (319)
T ss_pred hcccccHHHHHHH
Confidence 9999999999875
No 221
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=78.06 E-value=1.8 Score=35.16 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=21.4
Q ss_pred ccceEEEecCCCHHHHHHHHHhhHH
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMFGSE 170 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f~k~ 170 (235)
.+.++.|+-+-||||+...+...+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHH
Confidence 4557889999999999999988764
No 222
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=76.96 E-value=13 Score=26.01 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=35.9
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCC--CccceeEECCEEe
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI--EGFPTWVINGQVL 213 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I--~gyPTw~inG~~y 213 (235)
++.|+.+.||.|++.+-.+... ......++.+... + ..+ ..+.+- ..+|++..+|+..
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~-gl~~~~~~~~~~~--~---~~~-~~~~~p~~~~vP~l~~~~~~l 60 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALK-GVPYEYVEEDLGN--K---SEL-LLASNPVHKKIPVLLHNGKPI 60 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHc-CCCCEEEEeCccc--C---CHH-HHHhCCCCCCCCEEEECCEEe
Confidence 3678999999999999888763 2223344444321 1 123 233332 6899998887643
No 223
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=76.53 E-value=22 Score=25.85 Aligned_cols=69 Identities=13% Similarity=0.010 Sum_probs=46.8
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHhh---ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CC----EEecC
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QVLSG 215 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A~---~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG----~~y~G 215 (235)
.+..++-|+..+++ .....|.+.|. +.+.+..+.. .++.++++++. |++.+ +. ..|.|
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~---------~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g 83 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSD---------KEVAKKLKVKP-GSVVLFKPFEEEPVEYDG 83 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEECh---------HHHHHHcCCCC-CceEEeCCcccCCccCCC
Confidence 44556678899998 45556666442 3466777763 25666677765 88776 22 26999
Q ss_pred CCChHHHHHHh
Q 026661 216 EQDLSDLAKAS 226 (235)
Q Consensus 216 ~~~le~L~~~s 226 (235)
..+.++|.+|.
T Consensus 84 ~~~~~~l~~fi 94 (97)
T cd02981 84 EFTEESLVEFI 94 (97)
T ss_pred CCCHHHHHHHH
Confidence 99999999985
No 224
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=72.16 E-value=4 Score=32.41 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=18.7
Q ss_pred cceEEEecCCCHHHHHHHHHhhH
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k 169 (235)
+-+++|+-+-||||+++.+.+.+
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHHhh
Confidence 45779999999999999888765
No 225
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=71.85 E-value=12 Score=28.25 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 026661 91 VQLCIASLVVAALSTSYSSI 110 (235)
Q Consensus 91 ~~~~v~~~~~~~~~~~~~~~ 110 (235)
..++.++.++++++|+..+.
T Consensus 46 ~~~v~~vl~iL~~~Gii~DP 65 (84)
T PF04531_consen 46 SNIVNAVLTILVILGIINDP 65 (84)
T ss_pred HHHHHHHHHHHHHheeeeCC
Confidence 44555566666666666653
No 226
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=71.49 E-value=2.9 Score=35.33 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=14.1
Q ss_pred HHHhHhcCCCccceeEE-C------CEEecCCCChHHHH
Q 026661 192 AKACSDAKIEGFPTWVI-N------GQVLSGEQDLSDLA 223 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~i-n------G~~y~G~~~le~L~ 223 (235)
.+++++.||+++||+++ | |-..+|..+.+.+.
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~ 175 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVYE 175 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE---------------------
T ss_pred HHHHHHcCCCCCCEEEEEecccccccccccccccccccC
Confidence 36788999999999998 4 33788887776654
No 227
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=71.24 E-value=7.9 Score=35.24 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=41.2
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 211 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~ 211 (235)
.++.+|-+-++.|+.+...+...|. ..+.+|.+..+. ..++.++.+++.||+++ ||+
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~-------~~~~~~f~~~~LPtllvYk~G~ 209 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASK-------CPASENFPDKNLPTLLVYKNGD 209 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECG-------CCTTTTS-TTC-SEEEEEETTE
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhc-------cCcccCCcccCCCEEEEEECCE
Confidence 3667889999999999999998774 345677765431 12466899999999888 886
No 228
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=70.69 E-value=42 Score=26.99 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=47.7
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhh---ccCc--EEEccCCCCCCchhhHHHhHhcCCC--ccceeEE----CCEE---ec
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI----NGQV---LS 214 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~---~~l~--~Vec~~d~~n~~~k~~~lC~~~~I~--gyPTw~i----nG~~---y~ 214 (235)
+..|.-.=..+....+..+.+.|. .++. ++||+. .++.++..|++ .+|++.| +++. +.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~--------~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~ 170 (184)
T PF13848_consen 99 LILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD--------FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPE 170 (184)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT--------THHHHHHTTTTTSSSSEEEEEETTTSEEEE--S
T ss_pred EEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH--------hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCC
Confidence 334433446677788887777552 3344 566652 24788999998 8999997 3553 37
Q ss_pred CCCChHHHHHHh
Q 026661 215 GEQDLSDLAKAS 226 (235)
Q Consensus 215 G~~~le~L~~~s 226 (235)
|..+.+++.+|.
T Consensus 171 ~~~~~~~i~~Fl 182 (184)
T PF13848_consen 171 GEITPESIEKFL 182 (184)
T ss_dssp SCGCHHHHHHHH
T ss_pred CCCCHHHHHHHh
Confidence 889999998875
No 229
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=69.39 E-value=30 Score=27.92 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHH--HHHHHHHHHhcccchHHHHHHhhHHHHHHHHHHH
Q 026661 34 GSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL--LSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVA 101 (235)
Q Consensus 34 ~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~--lS~~L~~l~~~g~~~~~~~~~~~~~~~v~~~~~~ 101 (235)
..+..+...|.|++.+-.-++ .....|.+-+.+ +...+.-..+.|- --+..|.++..++++-++++
T Consensus 34 ~~~i~~~~~sf~~ls~al~~l-plsiAYavw~GiG~v~~~~ig~~~f~E-~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKI-ALGVAYALWEGIGILFITLFSVLLFDE-SLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHh
Confidence 346667777878777776665 788888886542 2223333333343 25667777877765555444
No 230
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=68.83 E-value=17 Score=25.28 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=32.0
Q ss_pred cCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCC
Q 026661 154 AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 216 (235)
Q Consensus 154 A~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~ 216 (235)
.+|||.|++.+-.+... ...+..++++.+. ...-..+|++..+|+.+.+.
T Consensus 13 ~s~sp~~~~v~~~L~~~-~i~~~~~~~~~~~------------~~p~g~vP~l~~~g~~l~es 62 (72)
T cd03054 13 PSLSPECLKVETYLRMA-GIPYEVVFSSNPW------------RSPTGKLPFLELNGEKIADS 62 (72)
T ss_pred CCCCHHHHHHHHHHHhC-CCceEEEecCCcc------------cCCCcccCEEEECCEEEcCH
Confidence 35999999999888752 1223345555321 12234799999998866544
No 231
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=68.52 E-value=7.2 Score=33.30 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=28.6
Q ss_pred HHhHhcCCCccceeEEC---C--EEecCCCChHHHHHHhC
Q 026661 193 KACSDAKIEGFPTWVIN---G--QVLSGEQDLSDLAKASG 227 (235)
Q Consensus 193 ~lC~~~~I~gyPTw~in---G--~~y~G~~~le~L~~~sg 227 (235)
+...+.||.|.||+++| | +.+-|..-++-+.++.|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l~ 209 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFLG 209 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHhC
Confidence 34566799999999993 5 79999999998887754
No 232
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=68.41 E-value=24 Score=34.85 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=47.0
Q ss_pred hhccc-ceEEEecCCCHHHHHHHHHhhHHhh--ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE---CCE----E
Q 026661 143 HLHAI-GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----V 212 (235)
Q Consensus 143 ~L~~~-gav~ygA~WCphC~~~k~~f~k~A~--~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i---nG~----~ 212 (235)
.|++. ..+.|..+-|+.|.+++++..+.+. ++|.+..-+.+. ..++.++++|+..|++.+ +|+ +
T Consensus 363 ~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~------~~~~~~~~~v~~~P~~~i~~~~~~~~~i~ 436 (555)
T TIGR03143 363 RLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGE------EPESETLPKITKLPTVALLDDDGNYTGLK 436 (555)
T ss_pred hcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecccc------chhhHhhcCCCcCCEEEEEeCCCcccceE
Confidence 34444 4567877889999999999988542 455443333221 146788999999999998 343 6
Q ss_pred ecCCCC
Q 026661 213 LSGEQD 218 (235)
Q Consensus 213 y~G~~~ 218 (235)
|.|.-.
T Consensus 437 f~g~P~ 442 (555)
T TIGR03143 437 FHGVPS 442 (555)
T ss_pred EEecCc
Confidence 666543
No 233
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=67.00 E-value=26 Score=33.69 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=46.8
Q ss_pred HHHhhcccc--eEEEecCCCHHHHHHHHH-----hhHHhh-----ccCcE--EEccCCCCCCchhhHHHhHhcCCCccce
Q 026661 140 LAKHLHAIG--AKMYGAFWCSHCLEQKQM-----FGSEAV-----KQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPT 205 (235)
Q Consensus 140 la~~L~~~g--av~ygA~WCphC~~~k~~-----f~k~A~-----~~l~~--Vec~~d~~n~~~k~~~lC~~~~I~gyPT 205 (235)
+-+-+++.. .+.|+.|==.+=-.||+. +.+.+. +.+.+ |+...| .+++++.|+..-+|
T Consensus 44 fk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd--------~klAKKLgv~E~~S 115 (383)
T PF01216_consen 44 FKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD--------AKLAKKLGVEEEGS 115 (383)
T ss_dssp HHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT--------HHHHHHHT--STTE
T ss_pred HHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH--------HHHHHhcCccccCc
Confidence 333444444 557778776666666654 333332 22443 554433 58999999999999
Q ss_pred eEE--CCE--EecCCCChHHHHHHh
Q 026661 206 WVI--NGQ--VLSGEQDLSDLAKAS 226 (235)
Q Consensus 206 w~i--nG~--~y~G~~~le~L~~~s 226 (235)
+.+ +|+ .|.|.++.+.|++|.
T Consensus 116 iyVfkd~~~IEydG~~saDtLVeFl 140 (383)
T PF01216_consen 116 IYVFKDGEVIEYDGERSADTLVEFL 140 (383)
T ss_dssp EEEEETTEEEEE-S--SHHHHHHHH
T ss_pred EEEEECCcEEEecCccCHHHHHHHH
Confidence 888 887 799999999999874
No 234
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=66.51 E-value=34 Score=23.73 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=38.5
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEe
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 213 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y 213 (235)
.+.|+.+-||.|++.+-.+... ......++++...... +..+.-+..--...|++.-+|+..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~-~i~~~~~~~~~~~~~~--~~~~~~~~~P~~~vP~l~~~g~~l 63 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK-GVDYELVPVDLTKGEH--KSPEHLARNPFGQIPALEDGDLKL 63 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc-CCCcEEEEeCcccccc--CCHHHHhhCCCCCCCEEEECCEEE
Confidence 4678888899999999887763 2234445555321111 123444456677899998777643
No 235
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.26 E-value=11 Score=36.65 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=54.2
Q ss_pred HHHHHhhcccc----eEEEecCCCHHHHHHHHHhhHHh--hccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE
Q 026661 138 LSLAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 211 (235)
Q Consensus 138 ~~la~~L~~~g----av~ygA~WCphC~~~k~~f~k~A--~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~ 211 (235)
..+.++.+.+. ..-|..--|-.|-+.-+.++--+ ..+|.-+-.|-. -+++..++.+|++.||.++||+
T Consensus 105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa------~Fq~Evear~IMaVPtvflnGe 178 (520)
T COG3634 105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA------LFQDEVEARNIMAVPTVFLNGE 178 (520)
T ss_pred HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch------hhHhHHHhccceecceEEEcch
Confidence 34555555553 44566777777777666555422 244554444321 1567788899999999999998
Q ss_pred -EecCCCChHHHHHHh
Q 026661 212 -VLSGEQDLSDLAKAS 226 (235)
Q Consensus 212 -~y~G~~~le~L~~~s 226 (235)
.-+|..++|++..-.
T Consensus 179 ~fg~GRmtleeilaki 194 (520)
T COG3634 179 EFGQGRMTLEEILAKI 194 (520)
T ss_pred hhcccceeHHHHHHHh
Confidence 457778888876543
No 236
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=65.83 E-value=18 Score=29.14 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=37.8
Q ss_pred HHHhhHHhh---ccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE--C--CE--EecCC-CChHHHHHHh
Q 026661 164 KQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N--GQ--VLSGE-QDLSDLAKAS 226 (235)
Q Consensus 164 k~~f~k~A~---~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--n--G~--~y~G~-~~le~L~~~s 226 (235)
.+.|.+.|. ..+.+..+.. .+++++++++. |++.+ + ++ .|.|. .+.++|.+|.
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~~---------~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTFN---------EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE----------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEEEcH---------HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHH
Confidence 345555442 2456666652 47899999999 99998 3 32 79998 7999999986
No 237
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=65.44 E-value=22 Score=28.59 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=38.7
Q ss_pred HHHHHhhHHhh---cc-CcEEEccCCCCCCchhhHHHhHhcCCC--ccceeEE-CCE--E---ecCCCChHHHHHHhC
Q 026661 162 EQKQMFGSEAV---KQ-LNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI-NGQ--V---LSGEQDLSDLAKASG 227 (235)
Q Consensus 162 ~~k~~f~k~A~---~~-l~~Vec~~d~~n~~~k~~~lC~~~~I~--gyPTw~i-nG~--~---y~G~~~le~L~~~sg 227 (235)
+.++.+.+.|. .+ +.++=.|.+. +...-+.+||. ++|++.+ |.+ + +.|.-+.|.+.+|..
T Consensus 41 ~~~~~l~~vAk~~kgk~i~Fv~vd~~~------~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~ 112 (130)
T cd02983 41 KYLEILKSVAEKFKKKPWGWLWTEAGA------QLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLR 112 (130)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEeCcc------cHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHH
Confidence 34556666442 34 5665555443 34577889995 4999888 221 4 458999999998863
No 238
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=64.18 E-value=3.5 Score=35.35 Aligned_cols=22 Identities=18% Similarity=0.646 Sum_probs=18.4
Q ss_pred ccceEEEecCCCHHHHHHHHHh
Q 026661 146 AIGAKMYGAFWCSHCLEQKQMF 167 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k~~f 167 (235)
+..+++|+-+-||||++..+.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccc
Confidence 3458999999999999988755
No 239
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=63.13 E-value=29 Score=30.99 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=35.4
Q ss_pred chhHHHHHHHHHHHHHHH-HHHHHHHHHHhCCccchhhhhHHHHHHHHHHHHhcc
Q 026661 26 SYGRLILLGSSTSMAAAS-AYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 79 (235)
Q Consensus 26 ~~~~~~l~~~st~ma~fS-~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~g 79 (235)
+..|+++++++.++-.++ .|+=|.|. =..|+.|+.=.+.-+.+.+..++|
T Consensus 23 R~~wlll~l~~~~L~~~Al~yfQ~vlg----L~PC~LCIyQR~a~l~i~l~gLIg 73 (218)
T PRK04307 23 RFLWLLMAIAMGGLIILAHSFFQIYLY----MAPCEQCVYIRFAMFVMAIGGVIA 73 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777 47777763 478999999986666666655554
No 240
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=61.68 E-value=56 Score=27.60 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=49.4
Q ss_pred cceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcC----CCccceeEECCEEecCCCChHHH
Q 026661 147 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK----IEGFPTWVINGQVLSGEQDLSDL 222 (235)
Q Consensus 147 ~gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~----I~gyPTw~inG~~y~G~~~le~L 222 (235)
..++.|.-|-|+-|++-.+.+... -=++..++-++ +..+=+++| -++==|-+|||+..+|--..+++
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~-Gf~Vk~~~~~d--------~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI 96 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN-GFEVKVVETDD--------FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAI 96 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC-CcEEEEeecCc--------HHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHH
Confidence 346778899999999877776631 11233333321 223323344 45677899999999999999999
Q ss_pred HHHhCC
Q 026661 223 AKASGF 228 (235)
Q Consensus 223 ~~~sg~ 228 (235)
+++..-
T Consensus 97 ~~ll~~ 102 (149)
T COG3019 97 ARLLAE 102 (149)
T ss_pred HHHHhC
Confidence 998753
No 241
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=61.58 E-value=12 Score=30.51 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=28.8
Q ss_pred hHHHhHhcCCCccceeEECCE-EecCC-CChHHHHHHhCCCCCCC
Q 026661 191 IAKACSDAKIEGFPTWVINGQ-VLSGE-QDLSDLAKASGFPEMSQ 233 (235)
Q Consensus 191 ~~~lC~~~~I~gyPTw~inG~-~y~G~-~~le~L~~~sg~~g~~~ 233 (235)
..++-++.|....|-..+||+ ...|. -+.+||++|+|...+.+
T Consensus 61 V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~i~~~~~ 105 (123)
T PF06953_consen 61 VNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLGISFSEL 105 (123)
T ss_dssp HHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT--GGGT
T ss_pred HHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhCCCcccc
Confidence 456667899999999999999 33444 67899999999865544
No 242
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=61.06 E-value=31 Score=29.11 Aligned_cols=57 Identities=7% Similarity=-0.036 Sum_probs=37.7
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 211 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~ 211 (235)
.+.|+.++||.|++..-.+... .-....+.++.+. . .++.-+..=-..+|+++.+|.
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~-gl~~e~~~v~~~~--~---~~~~~~~nP~g~VPvL~~~g~ 67 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEK-GVSVEIEQVEKDN--L---PQDLIDLNPYQSVPTLVDREL 67 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHC-CCCCEEEeCCccc--C---CHHHHHhCCCCCCCEEEECCE
Confidence 6789999999999999877652 2234456666432 1 123333344567999988875
No 243
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=60.19 E-value=39 Score=23.97 Aligned_cols=60 Identities=3% Similarity=-0.109 Sum_probs=37.6
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEE
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 212 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~ 212 (235)
+.|+.+.||.|++.+-...+. ......++.+...... +.+++-+-..-..+|++..||+.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-gl~~e~~~v~~~~~~~--~~~~~~~inP~g~vP~L~~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-GLRCEEYDVSLPLSEH--NEPWFMRLNPTGEVPVLIHGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-CCCCEEEEecCCcCcc--CCHHHHHhCcCCCCCEEEECCEE
Confidence 679999999998888666542 2234456655321111 12345555666779999878764
No 244
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=58.82 E-value=41 Score=23.21 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=35.8
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE-CCEE
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 212 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-nG~~ 212 (235)
+.|+.+.||.|.+.+-.+... ..++ ..++.+... . ..+.-+...-..+|++.. ||+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~-~~~i~~~~~~~~~~~--~---~~~~~~~~p~~~vP~l~~~~g~~ 61 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHET-GLGDDVELVLVNPWS--D---DESLLAVNPLGKIPALVLDDGEA 61 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHh-CCCCCcEEEEcCccc--C---ChHHHHhCCCCCCCEEEECCCCE
Confidence 678899999999988877652 1233 445555321 1 123334455677999987 6653
No 245
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=58.00 E-value=26 Score=27.48 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=33.0
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 200 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I 200 (235)
+++|+-|-|+-|++++..+.+. ...+.++|...+. -..+...++.++.|+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~p-~t~~el~~~l~~~g~ 50 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK-GIEPEVVKYLKNP-PTKSELEAIFAKLGL 50 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEeccCCC-cCHHHHHHHHHHcCC
Confidence 3689999999999999999863 3334456654443 223335666666553
No 246
>PRK01749 disulfide bond formation protein B; Provisional
Probab=57.09 E-value=51 Score=28.03 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHHhc
Q 026661 26 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLK 78 (235)
Q Consensus 26 ~~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~ 78 (235)
+..|.+++.+++++..++.|+=|++ +-..|+.|+.=...-+.+.++.+.
T Consensus 12 r~~~~l~~l~~~~ll~~Al~~Q~~l----gl~PC~LCi~QR~~~~~l~l~~li 60 (176)
T PRK01749 12 RGAWLLLAFTALALELTALYFQHVM----LLKPCVMCIYERVALFGILGAGLI 60 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc----CCCCcHhHHHHHHHHHHHHHHHHH
Confidence 3455556666777766665555554 458899999988555544444443
No 247
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=56.34 E-value=74 Score=25.10 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHH--HHHHHHHHHHhcccchHHHHHHhhHHHHHHHHHHH
Q 026661 29 RLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSA--LLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVA 101 (235)
Q Consensus 29 ~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa--~lS~~L~~l~~~g~~~~~~~~~~~~~~~v~~~~~~ 101 (235)
++........+...|.|++....-++ .-...|.+-+. ....++.-..+.|- --+..|.++..++++-++++
T Consensus 29 ~~~~~i~~~~~~~~sf~~l~~al~~i-pl~iAYavw~GlG~v~~~l~g~~~f~e-~~~~~~~~gi~lIi~GVi~l 101 (110)
T PRK09541 29 RLWPSVGTIICYCASFWLLAQTLAYI-PTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLVI 101 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHH
Confidence 33333345566667777776666565 88888888764 23333333334443 25566777777766555554
No 248
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=56.14 E-value=51 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=25.8
Q ss_pred HHHhHhcCC--CccceeEE--CCE----Ee--cCCCChHHHHHHh
Q 026661 192 AKACSDAKI--EGFPTWVI--NGQ----VL--SGEQDLSDLAKAS 226 (235)
Q Consensus 192 ~~lC~~~~I--~gyPTw~i--nG~----~y--~G~~~le~L~~~s 226 (235)
.++.++++| +.||.+.+ +|. +| +|.-+.++|.+|.
T Consensus 71 ~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fv 115 (126)
T PF07912_consen 71 MELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFV 115 (126)
T ss_dssp HHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHH
T ss_pred HHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHH
Confidence 699999999 77999887 332 78 9999999999986
No 249
>PRK02110 disulfide bond formation protein B; Provisional
Probab=56.06 E-value=45 Score=28.19 Aligned_cols=47 Identities=11% Similarity=0.244 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHH
Q 026661 26 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 76 (235)
Q Consensus 26 ~~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~ 76 (235)
+..|++++.++.++-.++.|+=|++ +-..|+.|+.=...-+.+.++.
T Consensus 12 R~~~~~~~l~~~~~l~~Al~~Q~~~----g~~PC~LCi~QR~~~~~i~l~~ 58 (169)
T PRK02110 12 RRLLVLLGLICLALVGGALYLQYVK----GEDPCPLCIIQRYAFLLIAIFA 58 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665554444 4688999999885554444444
No 250
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=54.33 E-value=42 Score=25.67 Aligned_cols=54 Identities=17% Similarity=0.028 Sum_probs=35.9
Q ss_pred cCCCHHHHHHHHHhhHHhhccCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecC
Q 026661 154 AFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG 215 (235)
Q Consensus 154 A~WCphC~~~k~~f~k~A~~~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G 215 (235)
..+||+||+..-.+.. +.++ .++++.+. + -.++-+..=...+|++.-||..+..
T Consensus 19 ~g~cpf~~rvrl~L~e---Kgi~ye~~~vd~~~--~---p~~~~~~nP~g~vPvL~~~~~~i~e 74 (91)
T cd03061 19 IGNCPFCQRLFMVLWL---KGVVFNVTTVDMKR--K---PEDLKDLAPGTQPPFLLYNGEVKTD 74 (91)
T ss_pred CCCChhHHHHHHHHHH---CCCceEEEEeCCCC--C---CHHHHHhCCCCCCCEEEECCEEecC
Confidence 5799999999988875 3454 46676542 2 1345444555679998888875543
No 251
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=53.89 E-value=4.8 Score=32.85 Aligned_cols=18 Identities=50% Similarity=0.957 Sum_probs=12.5
Q ss_pred ceEEEecCCCHHHHHHHHHhhHH
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSE 170 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~ 170 (235)
--.|||||||- .+.|.++
T Consensus 92 fstmygapwcd-----iqffeqe 109 (159)
T PF14673_consen 92 FSTMYGAPWCD-----IQFFEQE 109 (159)
T ss_pred cccccCCCccc-----eeehhhc
Confidence 35699999995 3456554
No 252
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=53.81 E-value=36 Score=28.37 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=44.4
Q ss_pred cccceEEEecCCCHHHHHHHHHhhHHh--hccCc-EEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE
Q 026661 145 HAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLN-YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 211 (235)
Q Consensus 145 ~~~gav~ygA~WCphC~~~k~~f~k~A--~~~l~-~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~ 211 (235)
.+.-++-||-.|=|-|-.+.+++.+.+ ..+.. ..-||.++ .++.-+-+++...||..+ |++
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide------V~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE------VPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch------hhhhhhhhcccCCceEEEEEcCc
Confidence 445577899999999999999998854 23333 23445443 468888899999999665 654
No 253
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=52.70 E-value=1e+02 Score=24.36 Aligned_cols=73 Identities=16% Similarity=0.038 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHH--HHHHHHHHHhcccchHHHHHHhhHHHHHHHHHH
Q 026661 26 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL--LSFSLFFISLKEFSVEEIQKVLGVQLCIASLVV 100 (235)
Q Consensus 26 ~~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~--lS~~L~~l~~~g~~~~~~~~~~~~~~~v~~~~~ 100 (235)
..+++.-......+...|.|++..-.-++ .-...|.+-+.+ +..++.-..+.|- --+..|.++..++++-++.
T Consensus 31 gf~~~~~~~~~~~~~~~sf~~Ls~al~~l-pvgvAYAvW~GiG~v~~~~ig~~~f~e-~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 31 GFRRKIYGILSLAAVLAAFSALSQAVKGI-DLSVAYALWGGFGIAATLAAGWILFGQ-RLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHH
Confidence 34444445556667778888888777665 677777776653 2223333333342 3566777777766555444
No 254
>PRK11431 multidrug efflux system protein; Provisional
Probab=51.23 E-value=1.2e+02 Score=23.81 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHH--HHHHHHHHHhcccchHHHHHHhhHHHHHHHHHHH
Q 026661 28 GRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL--LSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVA 101 (235)
Q Consensus 28 ~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~--lS~~L~~l~~~g~~~~~~~~~~~~~~~v~~~~~~ 101 (235)
+++.-...+..+...|.|++.+-.-++ .-...|.+-+.+ ...++.-..+.|- --+..|.++..++++-++.+
T Consensus 27 ~~~~~~~~~i~~~~~sf~~Ls~al~~i-p~gvaYAvW~GiG~v~~~lig~~~f~e-~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 27 SRLTPSIITVTAMIVSMALLAWAMKSL-PVGTAYAVWTGIGAVGAAITGIVLLGE-SASPARLLSLALIVAGIIGL 100 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhC-CcHhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHhh
Confidence 344433445667778888888877665 777777776652 2223333334443 25667778877665555443
No 255
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=50.39 E-value=17 Score=29.76 Aligned_cols=65 Identities=8% Similarity=-0.003 Sum_probs=37.9
Q ss_pred HHHHHHhhccc--ceEEEecCCCHHHHHH-HHHhhHHh--hc--cCc-EEEccCCCCCCchhhHHHhHhcCC-Cccc
Q 026661 137 ALSLAKHLHAI--GAKMYGAFWCSHCLEQ-KQMFGSEA--VK--QLN-YVECFPDGYRKGTKIAKACSDAKI-EGFP 204 (235)
Q Consensus 137 ~~~la~~L~~~--gav~ygA~WCphC~~~-k~~f~k~A--~~--~l~-~Vec~~d~~n~~~k~~~lC~~~~I-~gyP 204 (235)
.+.|.+.++.. -..+|-+.|||.|..+ .+-|.+.. ++ ... .+-+..|... .+++.+++.++ ..||
T Consensus 20 ~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~---~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 20 PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPF---VMKAWGKALGAKDKIR 93 (155)
T ss_pred eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHH---HHHHHHHhhCCCCcEE
Confidence 35677654432 3557888999999999 77776532 22 221 3333333212 25677877777 3566
No 256
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.32 E-value=19 Score=31.97 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.9
Q ss_pred HHHhHhcCCCccceeEE--CCE
Q 026661 192 AKACSDAKIEGFPTWVI--NGQ 211 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~i--nG~ 211 (235)
..+|++.|+.||||+.+ ||+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~ 185 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGT 185 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCc
Confidence 45889999999999998 888
No 257
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=49.02 E-value=53 Score=26.42 Aligned_cols=83 Identities=12% Similarity=0.199 Sum_probs=50.9
Q ss_pred HHHHHHhhcccc--eEEEecCCCHHHHHHHHHhhHHhh-----ccCcEEEccCCCCCCchhhHHHhHhcCCC----ccce
Q 026661 137 ALSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAV-----KQLNYVECFPDGYRKGTKIAKACSDAKIE----GFPT 205 (235)
Q Consensus 137 ~~~la~~L~~~g--av~ygA~WCphC~~~k~~f~k~A~-----~~l~~Vec~~d~~n~~~k~~~lC~~~~I~----gyPT 205 (235)
.-.+-+-|+..+ .+.| ..-=..-..+-.+|.+.|. .-+.+|||...+ .+.+|++.+|. -=|.
T Consensus 9 ~KdfKKLLRTr~NVLvLy-~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e------~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLY-SKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE------SRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred hHHHHHHHhhcCcEEEEE-ecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH------HHHHHHHHccCCCCCCCcc
Confidence 345666666665 3345 4444455555567776542 126799998432 36899999998 4443
Q ss_pred eEE---CCE---EecCCCChHHHHHHh
Q 026661 206 WVI---NGQ---VLSGEQDLSDLAKAS 226 (235)
Q Consensus 206 w~i---nG~---~y~G~~~le~L~~~s 226 (235)
-.. ||. .|.-..+...++.|.
T Consensus 82 ~LkHYKdG~fHkdYdR~~t~kSmv~Fl 108 (112)
T cd03067 82 ELKHYKDGDFHTEYNRQLTFKSMVAFL 108 (112)
T ss_pred hhhcccCCCccccccchhhHHHHHHHh
Confidence 322 776 677666666666653
No 258
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=48.49 E-value=89 Score=28.33 Aligned_cols=75 Identities=9% Similarity=0.136 Sum_probs=52.6
Q ss_pred hcccceEEEecCCCHHHHHHHHHhhH-HhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE-EecCCCChHH
Q 026661 144 LHAIGAKMYGAFWCSHCLEQKQMFGS-EAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLSD 221 (235)
Q Consensus 144 L~~~gav~ygA~WCphC~~~k~~f~k-~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~-~y~G~~~le~ 221 (235)
+.+.-++.|.-.-|-.|..+-+-+.. .--.++.++|... ...+.-+.+|-+.|..++||+ .|.+.-++++
T Consensus 8 ~~~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~--------p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ 79 (265)
T COG5494 8 EIEMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAEL--------PPFLAFEKGVISVPSVFIDGELVYADPVDPEE 79 (265)
T ss_pred hhheEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCC--------ChHHHhhcceeecceEEEcCeEEEcCCCCHHH
Confidence 34556778888889888877555443 1113445565542 145666789999999999999 6788899999
Q ss_pred HHHHh
Q 026661 222 LAKAS 226 (235)
Q Consensus 222 L~~~s 226 (235)
+....
T Consensus 80 ies~~ 84 (265)
T COG5494 80 IESIL 84 (265)
T ss_pred HHHHH
Confidence 98654
No 259
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=48.29 E-value=1.3e+02 Score=23.44 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHHhcccchHHHHHHhhHHHHHHHHHHHH
Q 026661 40 AAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAA 102 (235)
Q Consensus 40 a~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~g~~~~~~~~~~~~~~~v~~~~~~~ 102 (235)
...|.+++....-++ .....|.+.+.-.-.+.++=.+.-++--+..|.++..++++=+++++
T Consensus 47 ~~l~~~~~~~al~~i-plg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 47 LGLAMVLWLLVLQNV-PVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHhhC-ChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 333444443333333 67777776663222222222222233355667777776655555544
No 260
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=47.42 E-value=28 Score=24.93 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEEC-CEEe
Q 026661 155 FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVL 213 (235)
Q Consensus 155 ~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~in-G~~y 213 (235)
+|||+|++.+-.+... ......++.+..++.+ ...++ +...-...|++..| |+..
T Consensus 14 ~~Sp~~~kv~~~L~~~-~i~~~~~~~~~~~~~~--~~~~~-~~~p~~~vP~L~~~~~~~l 69 (84)
T cd03038 14 AFSPNVWKTRLALNHK-GLEYKTVPVEFPDIPP--ILGEL-TSGGFYTVPVIVDGSGEVI 69 (84)
T ss_pred CcCChhHHHHHHHHhC-CCCCeEEEecCCCccc--ccccc-cCCCCceeCeEEECCCCEE
Confidence 7999999999888762 2233455555332111 01222 33446789999877 6543
No 261
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=47.27 E-value=79 Score=21.39 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=35.4
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCC-CCCCchhhHHHhHhcCCCccceeEECCEEe
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL 213 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d-~~n~~~k~~~lC~~~~I~gyPTw~inG~~y 213 (235)
+.|+-+.|+.|++.+-.+... ...+..++++.. +.+. ..+.-+...-..+|++..+|+..
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~l 62 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLK-GLDYEYVPVNLLKGEQL---SPAYRALNPQGLVPTLVIDGLVL 62 (73)
T ss_pred EEecCCCCcchHHHHHHHHHc-CCCCeEEEecCccCCcC---ChHHHHhCCCCCCCEEEECCEEE
Confidence 567777788888887776652 223445555532 1111 12333345567899998887643
No 262
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=47.17 E-value=28 Score=27.64 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=23.7
Q ss_pred hHHHhHhcCCCccceeEE--CCE---EecCCCChHH
Q 026661 191 IAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSD 221 (235)
Q Consensus 191 ~~~lC~~~~I~gyPTw~i--nG~---~y~G~~~le~ 221 (235)
..++..++|+..+|++.+ +|+ ..+|.|+=++
T Consensus 71 e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred HHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 367888999999999888 887 6777776443
No 263
>PRK04388 disulfide bond formation protein B; Provisional
Probab=46.98 E-value=74 Score=26.86 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHHhcc
Q 026661 27 YGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 79 (235)
Q Consensus 27 ~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~g 79 (235)
..+++++.+++++-.++.|+=|++ +-..|+.|+.=.+.-+.+.++.+.+
T Consensus 10 ~~~ll~~l~~~~ll~~Aly~Q~~~----gl~PC~LCi~QR~~~~~i~l~~li~ 58 (172)
T PRK04388 10 AQFLLGFLACAGLLAYAIFVQLHL----GLEPCPLCIFQRIAFAALALLFLIG 58 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777776766665555 4578999999886655555555544
No 264
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=46.74 E-value=49 Score=25.86 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=39.0
Q ss_pred HHHHHHhhHHh--hc--cCcEEEccCCCCCCchhhHHHhHhcCCCc----cceeEE---CCEEe--cCCC-ChHHHHHHh
Q 026661 161 LEQKQMFGSEA--VK--QLNYVECFPDGYRKGTKIAKACSDAKIEG----FPTWVI---NGQVL--SGEQ-DLSDLAKAS 226 (235)
Q Consensus 161 ~~~k~~f~k~A--~~--~l~~Vec~~d~~n~~~k~~~lC~~~~I~g----yPTw~i---nG~~y--~G~~-~le~L~~~s 226 (235)
...++.+.+.| ++ ++.+|-+|.+. .....+.+|+++ +|++.| ++++| .+.. +.+.|.+|.
T Consensus 34 ~~~~~~~~~vAk~fk~gki~Fv~~D~~~------~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~ 107 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRKLNFAVADKED------FSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFL 107 (111)
T ss_pred HHHHHHHHHHHHHCcCCeEEEEEEcHHH------HHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHH
Confidence 34455665544 23 67777666553 223567889985 999998 45666 5566 778888874
No 265
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=45.59 E-value=1.1 Score=36.15 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=21.5
Q ss_pred hHHHhHhcCCCccceeEECCEEecCCCChHHHHHHhCC
Q 026661 191 IAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 228 (235)
Q Consensus 191 ~~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~~sg~ 228 (235)
.+++.+++|| +|||..- -+++|.+-.||
T Consensus 52 lKe~e~~lgi-SYPTvR~---------rLd~ii~~lg~ 79 (113)
T PF09862_consen 52 LKEMEKELGI-SYPTVRN---------RLDKIIEKLGY 79 (113)
T ss_pred HHHHHHHHCC-CcHHHHH---------HHHHHHHHhCC
Confidence 7899999999 9999753 25666666666
No 266
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=44.83 E-value=52 Score=25.56 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=31.4
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 199 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~ 199 (235)
+++|+-+-|+-|++.+..+.+. ...+.++|.-.++ -......++.++.|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~~-~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA-GIEPEIVEYLKTP-PTAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEecccCC-cCHHHHHHHHHHcC
Confidence 3689999999999999988763 2334455554333 22233556666665
No 267
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=42.74 E-value=66 Score=27.30 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=33.6
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE-CCEE
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 212 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-nG~~ 212 (235)
+.|+-+.||.|++.+-.+... .-....+++..+. . ....+......+|++.. ||+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~-gl~~e~~~~~~~~-~-----~~~~~~np~g~vP~l~~~~g~~ 57 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLK-NIPVEKHVLLNDD-E-----ETPIRMIGAKQVPILQKDDGRA 57 (209)
T ss_pred CeecCCCCChHHHHHHHHHHc-CCCeEEEECCCCc-c-----hhHHHhcCCCCcceEEeeCCeE
Confidence 357788899999999888752 1123345554332 1 12233344567999984 7753
No 268
>PHA03049 IMV membrane protein; Provisional
Probab=42.15 E-value=26 Score=25.85 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=16.2
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcCCC
Q 026661 86 QKVLGVQLCIASLVVAALSTSYSSI 110 (235)
Q Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~ 110 (235)
+.+++..++|+++.++ ++++|...
T Consensus 3 ~d~~l~iICVaIi~lI-vYgiYnkk 26 (68)
T PHA03049 3 GDIILVIICVVIIGLI-VYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhcc
Confidence 4566677777766655 47788875
No 269
>PRK10387 glutaredoxin 2; Provisional
Probab=41.32 E-value=88 Score=25.92 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=33.6
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE-CCE
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQ 211 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-nG~ 211 (235)
++.|+.+.||+|++.+-+++.. ......++.+.+. . ... .+......+|++.. +|.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~-gi~y~~~~~~~~~-~----~~~-~~~~p~~~VPvL~~~~g~ 57 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLK-NIPVELIVLANDD-E----ATP-IRMIGQKQVPILQKDDGS 57 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHc-CCCeEEEEcCCCc-h----hhH-HHhcCCcccceEEecCCe
Confidence 3678889999999999887752 1122345554321 1 111 23344567999965 665
No 270
>COG5393 Predicted membrane protein [Function unknown]
Probab=41.16 E-value=93 Score=25.59 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhh-hHHHHHHHHHHHHhcccchH
Q 026661 27 YGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL-TSALLSFSLFFISLKEFSVE 83 (235)
Q Consensus 27 ~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl-~Sa~lS~~L~~l~~~g~~~~ 83 (235)
+.-.++|++..+|.....-+|.++.-.++---=.|-+ .++.-...+.++..+|..|.
T Consensus 46 nll~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~ciW~ 103 (131)
T COG5393 46 NLLQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGCIWT 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677777655555565555554211222333 33344444444445554443
No 271
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=40.90 E-value=95 Score=25.65 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHHhc
Q 026661 30 LILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLK 78 (235)
Q Consensus 30 ~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~ 78 (235)
.+.+.++.+...+|.|+=|++ +-..|+.|+.=.+.-+.+.++.+.
T Consensus 12 ~l~~l~~~~~~~~aly~q~v~----gl~PC~LCi~QRi~~~~l~l~~li 56 (139)
T PRK03113 12 LTAWGASFIATLGSLYFSEIM----KFEPCVLCWYQRIFMYPFVLWLGI 56 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344555666666776666665 458899999988655544444433
No 272
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=40.33 E-value=26 Score=31.13 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=46.8
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccC--cEEEccCCCCCCchhhHHHhHhcCCCccceeEE--CCE---EecCCC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 217 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l--~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--nG~---~y~G~~ 217 (235)
+.-||-|-=-.|+-+..-+...|..-+ .+|.++.+. -+=++.+.+|+-.||+.+ ||+ ++.|-.
T Consensus 88 VcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~------~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~ 157 (211)
T KOG1672|consen 88 VCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEK------APFLVTKLNIKVLPTVALFKNGKTVDYVVGFT 157 (211)
T ss_pred EEEEEcCCCcceehHHHHHHHHHHhcccceEEEEeccc------CceeeeeeeeeEeeeEEEEEcCEEEEEEeeHh
Confidence 336778998999999999988775433 467766542 246899999999999877 997 455543
No 273
>PRK10853 putative reductase; Provisional
Probab=40.27 E-value=45 Score=26.49 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=31.7
Q ss_pred eEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCC
Q 026661 149 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE 201 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~ 201 (235)
+++|+-+-|+-|++.+..+.+. .-...++|--.+... .....+++++.|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~d~~k~p~s-~~eL~~~l~~~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-GIDYRFHDYRVDGLD-SELLQGFIDELGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-CCCcEEeehccCCcC-HHHHHHHHHHcCHH
Confidence 5789999999999999999862 222334444322211 12255666666644
No 274
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=40.24 E-value=5.3 Score=36.18 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=8.6
Q ss_pred ecCCCHHHHHH
Q 026661 153 GAFWCSHCLEQ 163 (235)
Q Consensus 153 gA~WCphC~~~ 163 (235)
+.+|||+|+.+
T Consensus 264 ~t~~CP~CQ~~ 274 (274)
T PRK01103 264 STFFCPRCQKR 274 (274)
T ss_pred CcEECcCCCCc
Confidence 46899999854
No 275
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.21 E-value=22 Score=29.18 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.2
Q ss_pred HHHhHhcCCCccceeEE
Q 026661 192 AKACSDAKIEGFPTWVI 208 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~i 208 (235)
.+...+.||.|.||++|
T Consensus 159 ~~~a~~~gv~g~Ptfvv 175 (193)
T cd03025 159 QKLARELGINGFPTLVL 175 (193)
T ss_pred HHHHHHcCCCccCEEEE
Confidence 34566789999999999
No 276
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=39.18 E-value=32 Score=25.58 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=18.7
Q ss_pred HHhHhcCCCccceeEE---CCE-EecCC
Q 026661 193 KACSDAKIEGFPTWVI---NGQ-VLSGE 216 (235)
Q Consensus 193 ~lC~~~~I~gyPTw~i---nG~-~y~G~ 216 (235)
++.++++++++|+.++ +|+ .|.|.
T Consensus 86 ~~~~~~~~~~~P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 86 ELGMAYQVSKLPYAVLLDEAGVIAAKGL 113 (114)
T ss_pred HHHhhcCCCCcCeEEEECCCCeEEeccc
Confidence 4678899999999776 677 67663
No 277
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=38.07 E-value=20 Score=26.14 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=17.1
Q ss_pred CCHHHHHHHH--HhhHHhhccCcEEEccC
Q 026661 156 WCSHCLEQKQ--MFGSEAVKQLNYVECFP 182 (235)
Q Consensus 156 WCphC~~~k~--~f~k~A~~~l~~Vec~~ 182 (235)
=||.|+.|.. +|.+ +.++.|||-.
T Consensus 12 ~CP~C~~~Dtl~mW~E---n~ve~vECV~ 37 (66)
T COG3529 12 VCPACQAQDTLAMWRE---NNVEIVECVK 37 (66)
T ss_pred CCcccchhhHHHHHHh---cCCceEehhh
Confidence 5999999964 5654 4677777754
No 278
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=37.45 E-value=4.6 Score=36.61 Aligned_cols=15 Identities=20% Similarity=0.780 Sum_probs=11.4
Q ss_pred EecCCCHHHHHHHHH
Q 026661 152 YGAFWCSHCLEQKQM 166 (235)
Q Consensus 152 ygA~WCphC~~~k~~ 166 (235)
=+.+|||.|+...|+
T Consensus 253 R~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 253 RGTHFCPQCQPLRPL 267 (269)
T ss_pred CCcEECCCCcCCCCC
Confidence 347899999987654
No 279
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=36.64 E-value=8.2 Score=35.56 Aligned_cols=9 Identities=33% Similarity=1.180 Sum_probs=7.5
Q ss_pred ecCCCHHHH
Q 026661 153 GAFWCSHCL 161 (235)
Q Consensus 153 gA~WCphC~ 161 (235)
+.+|||+|+
T Consensus 264 ~t~~CP~CQ 272 (273)
T COG0266 264 STFYCPVCQ 272 (273)
T ss_pred cCEeCCCCC
Confidence 467999997
No 280
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=35.68 E-value=92 Score=21.36 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=35.7
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEe
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 213 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y 213 (235)
+.|+.+.|+.|+..+-.+... .-..+.++.+..... ..+.-+...-...|++..+|...
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~~~~~~~~----~~~~~~~~p~~~vP~L~~~~~~l 60 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADA-GVEYEDVRITYEEWP----ELDLKPTLPFGQLPVLEIDGKKL 60 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHC-CCCcEEEEeCHHHhh----hhhhccCCcCCCCCEEEECCEEE
Confidence 567778899999888888762 223344555543111 11222345566789998887643
No 281
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=34.66 E-value=94 Score=24.13 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=39.8
Q ss_pred HHHHHHhhHHhh------ccCcEEEccCCCCCCchhhHHHhHhcCCCc--cceeEE----CCEEec---CCCChHHHHHH
Q 026661 161 LEQKQMFGSEAV------KQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI----NGQVLS---GEQDLSDLAKA 225 (235)
Q Consensus 161 ~~~k~~f~k~A~------~~l~~Vec~~d~~n~~~k~~~lC~~~~I~g--yPTw~i----nG~~y~---G~~~le~L~~~ 225 (235)
...++.+.+.|. .++.+|-+|.+. .....+.+|+++ +|.+.| ++++|. +.-+.+.|.+|
T Consensus 30 ~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~------~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~F 103 (111)
T cd03072 30 ESLKEFKQAVARQLISEKGAINFLTADGDK------FRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQF 103 (111)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEEechH------hhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHH
Confidence 445666666443 246777776653 123677899998 999999 234554 77788888887
Q ss_pred h
Q 026661 226 S 226 (235)
Q Consensus 226 s 226 (235)
.
T Consensus 104 v 104 (111)
T cd03072 104 V 104 (111)
T ss_pred H
Confidence 5
No 282
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=33.47 E-value=64 Score=26.04 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=27.6
Q ss_pred CHHHHHHHHHhhHH--hhccCc--EEEccCCCCCCchhhHHHhHh--cCCCccceeEE
Q 026661 157 CSHCLEQKQMFGSE--AVKQLN--YVECFPDGYRKGTKIAKACSD--AKIEGFPTWVI 208 (235)
Q Consensus 157 CphC~~~k~~f~k~--A~~~l~--~Vec~~d~~n~~~k~~~lC~~--~~I~gyPTw~i 208 (235)
||||..++-++.-- -.+.++ +|+-.. + ..++... ..=||-|++++
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R----P---R~~vi~llGE~~QslPvLVL 74 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPR----P---RQAVIALLGEANQSLPVLVL 74 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCC----c---hHHHHHHhChhccCCCEEEe
Confidence 99999999887651 123444 555432 1 2233332 34589999999
No 283
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=32.87 E-value=1.7e+02 Score=27.67 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=46.5
Q ss_pred hHHHHHHhhccc--ceEEEecCCCHHHHHHHHHhhHHhhccCc--EEEccCCCCCCchhhHHHhHhcCCCccceeEECCE
Q 026661 136 FALSLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 211 (235)
Q Consensus 136 ~~~~la~~L~~~--gav~ygA~WCphC~~~k~~f~k~A~~~l~--~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~ 211 (235)
.+..-+.||..+ ..+.|-=--||-|-+.+-++.- ..|+ .||++|-- ++ ..+. -..+-.|-+.++|+
T Consensus 76 hae~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDy---hgisY~VVEVnpV~-r~---eIk~---SsykKVPil~~~Ge 145 (370)
T KOG3029|consen 76 HAETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDY---HGISYAVVEVNPVL-RQ---EIKW---SSYKKVPILLIRGE 145 (370)
T ss_pred HHHHHHhhcCCCCceEEEEeeccCchHHHHHHHHhh---cCCceEEEEecchh-hh---hccc---cccccccEEEeccc
Confidence 456678888888 6788888999999999987764 3455 58887642 11 1122 24667899999887
No 284
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=31.72 E-value=1.8e+02 Score=20.13 Aligned_cols=60 Identities=7% Similarity=-0.109 Sum_probs=37.3
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEE
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 212 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~ 212 (235)
+.|+.+-++.|++..-.+... ......++++..+... +..+..+..--...|++..+|+.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~-g~~~~~~~v~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~ 61 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLN-KIPFEECPIDLRKGEQ--LTPEFKKINPFGKVPAIVDGDFT 61 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHc-CCCcEEEEecCCCCCc--CCHHHHHhCcCCCCCEEEECCEE
Confidence 578889999999887777652 2234455665322111 12344445667789999887764
No 285
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=30.97 E-value=2.7e+02 Score=21.98 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=40.0
Q ss_pred hhHHHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCcc-----------
Q 026661 135 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGF----------- 203 (235)
Q Consensus 135 ~~~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gy----------- 203 (235)
+...++.+.+++.|+.+.+-.==+. .+++ .|.++..-.++++ +|++ .++.+++|+.+.
T Consensus 51 ~~l~~~~~~~~~~~v~vi~Is~d~~-~~~~-~~~~~~~~~~~~l-~D~~--------~~~~~~~gv~~~~~~~~~~~~~~ 119 (154)
T PRK09437 51 CGLRDNMDELKKAGVVVLGISTDKP-EKLS-RFAEKELLNFTLL-SDED--------HQVAEQFGVWGEKKFMGKTYDGI 119 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCH-HHHH-HHHHHhCCCCeEE-ECCC--------chHHHHhCCCcccccccccccCc
Confidence 3455677778877776654431111 2222 2322211223333 3433 256788888765
Q ss_pred -ce-eEE--CCE---EecCCCChHHH
Q 026661 204 -PT-WVI--NGQ---VLSGEQDLSDL 222 (235)
Q Consensus 204 -PT-w~i--nG~---~y~G~~~le~L 222 (235)
|+ ++| ||+ .|.|....+.+
T Consensus 120 ~~~~~lid~~G~i~~~~~g~~~~~~~ 145 (154)
T PRK09437 120 HRISFLIDADGKIEHVFDKFKTSNHH 145 (154)
T ss_pred ceEEEEECCCCEEEEEEcCCCcchhH
Confidence 44 555 776 68876554443
No 286
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=30.87 E-value=3.3e+02 Score=23.02 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhCCccchhhhhHHHHHHH
Q 026661 44 AYFLYILSTNFSGATCSYCLTSALLSFS 71 (235)
Q Consensus 44 ~yl~yil~~~i~~a~C~yCl~Sa~lS~~ 71 (235)
.|+=|++ +-+.|+.|+.=.+.=+.
T Consensus 31 l~fq~i~----g~~PC~LC~~QR~~~~~ 54 (170)
T COG1495 31 LYFQYIL----GLEPCPLCLYQRIAMYG 54 (170)
T ss_pred HHHHHHc----CCCCcHHHHHHHHHHHH
Confidence 3555554 35789999998865555
No 287
>COG2510 Predicted membrane protein [Function unknown]
Probab=30.85 E-value=1.1e+02 Score=25.57 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=41.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccch--hhhhHHHHHHHHHHHHhcccchHHHHHHhhHHHHHH
Q 026661 23 INESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCS--YCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIA 96 (235)
Q Consensus 23 ~~~~~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~--yCl~Sa~lS~~L~~l~~~g~~~~~~~~~~~~~~~v~ 96 (235)
++ .++|+. +.-.+.+..-+.+.|.++-|.++++=. -=-.|-++...+-++.+.-+ -+.++..|..+++.
T Consensus 62 ~~-~k~~lf--lilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~--ls~~~~iG~~LI~~ 132 (140)
T COG2510 62 IG-PKSWLF--LILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGER--LSLPTWIGIVLIVI 132 (140)
T ss_pred cC-cceehh--hhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCC--CCHHHHHHHHHHHh
Confidence 44 455543 344457777888999999998776543 33344455554444444333 56677777666544
No 288
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=30.48 E-value=2.9e+02 Score=22.24 Aligned_cols=66 Identities=14% Similarity=-0.036 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHHHHHH--hcccchHHHHHHhhHHHHHHHHHHH
Q 026661 35 SSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS--LKEFSVEEIQKVLGVQLCIASLVVA 101 (235)
Q Consensus 35 ~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~--~~g~~~~~~~~~~~~~~~v~~~~~~ 101 (235)
.+..+.+.|.++.....-+ ...+..|.+.|....+..+... +.-.+--+..|.++..++++=++++
T Consensus 53 lgl~~~~la~~~w~~aL~~-~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv 120 (129)
T PRK02971 53 LGLAGYALSMLCWLKALRY-LPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLI 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444 4888888888776433332222 1233345566667766665544443
No 289
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=30.29 E-value=1.8e+02 Score=20.16 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=36.4
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE-CCEE
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 212 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-nG~~ 212 (235)
+.|+.+-||.|.+.+-++... ......++.+..+.+. .++.-+..-....|++.. ||..
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~-gi~~~~~~v~~~~~~~---~~~~~~~nP~~~vP~L~~~~g~~ 61 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYN-GLDVEIVDFQPGKENK---TPEFLKKFPLGKVPAFEGADGFC 61 (75)
T ss_pred eEecCCCCccHHHHHHHHHHc-CCceEEEecccccccC---CHHHHHhCCCCCCCEEEcCCCCE
Confidence 568788899999888777752 2234445555431121 234444455677999998 4653
No 290
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=30.23 E-value=84 Score=25.32 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.9
Q ss_pred eEEEecCCCHHHHHHHHHhhH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k 169 (235)
+++|+-|-|+-|++++..+.+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 578999999999999999875
No 291
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=29.18 E-value=24 Score=32.11 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=15.9
Q ss_pred ccceEEEecCCCHHHHHHH
Q 026661 146 AIGAKMYGAFWCSHCLEQK 164 (235)
Q Consensus 146 ~~gav~ygA~WCphC~~~k 164 (235)
+..+.+-||.|||.|-...
T Consensus 59 k~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 59 KPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred eeEEEEEecccCccchhhH
Confidence 4557789999999998876
No 292
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=29.11 E-value=18 Score=34.01 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCccchhhhhHHHHHHHHHHHHhcccchHHHHHHhhHHHHH
Q 026661 46 FLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCI 95 (235)
Q Consensus 46 l~yil~~~i~~a~C~yCl~Sa~lS~~L~~l~~~g~~~~~~~~~~~~~~~v 95 (235)
.+-||.||- .-.||.=++-.++ +++..++---|.--+|.+|.++++
T Consensus 66 IiIImlF~R-rLLCPLGlLCiil---imi~lLv~~L~tLtGQ~LF~Gi~~ 111 (381)
T PF05297_consen 66 IIIIMLFKR-RLLCPLGLLCIIL---IMIVLLVSMLWTLTGQTLFVGIVI 111 (381)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHH-hhcCcchHHHHHH---HHHHHHHHHHHHhhccHHHHHHHH
Confidence 345677774 6777653333322 222222333466677877777653
No 293
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=27.66 E-value=14 Score=33.67 Aligned_cols=9 Identities=33% Similarity=1.409 Sum_probs=7.5
Q ss_pred ecCCCHHHH
Q 026661 153 GAFWCSHCL 161 (235)
Q Consensus 153 gA~WCphC~ 161 (235)
..+|||+|+
T Consensus 273 ~t~~CP~CQ 281 (282)
T PRK13945 273 STHWCPNCQ 281 (282)
T ss_pred ccEECCCCc
Confidence 468999997
No 294
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=27.57 E-value=2.1e+02 Score=19.83 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEEecCC
Q 026661 156 WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 216 (235)
Q Consensus 156 WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~y~G~ 216 (235)
+||.|.+.+-.+... ......++.+.. +...-...|++..||+.+...
T Consensus 16 ~sp~~~~v~~~L~~~-gi~~~~~~~~~~------------~~~p~g~vPvl~~~g~~l~eS 63 (75)
T cd03080 16 LSPFCLKVETFLRMA-GIPYENKFGGLA------------KRSPKGKLPFIELNGEKIADS 63 (75)
T ss_pred CCHHHHHHHHHHHHC-CCCcEEeecCcc------------cCCCCCCCCEEEECCEEEcCH
Confidence 789999998877652 222334554321 112345689999888765443
No 295
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=27.56 E-value=6.8 Score=28.97 Aligned_cols=23 Identities=26% Similarity=0.775 Sum_probs=14.8
Q ss_pred CCHHHHHHHHH--hhHHhhccCcEEEcc
Q 026661 156 WCSHCLEQKQM--FGSEAVKQLNYVECF 181 (235)
Q Consensus 156 WCphC~~~k~~--f~k~A~~~l~~Vec~ 181 (235)
=||+|+.+..+ |.+ +++.++||-
T Consensus 10 ~CP~C~~~D~i~~~~e---~~ve~vECV 34 (71)
T PF09526_consen 10 VCPKCQAMDTIMMWRE---NGVEYVECV 34 (71)
T ss_pred cCCCCcCccEEEEEEe---CCceEEEec
Confidence 49999999753 333 346666663
No 296
>COG5546 Small integral membrane protein [Function unknown]
Probab=27.49 E-value=1.3e+02 Score=22.71 Aligned_cols=43 Identities=5% Similarity=0.033 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHhcccchHHHHHHhhHHHHHHHHHHHHHHhhcCC
Q 026661 63 LTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSS 109 (235)
Q Consensus 63 l~Sa~lS~~L~~l~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 109 (235)
+.++++-++.=++-++|..|..= ..-++-++..+++++++-.+
T Consensus 17 il~~ifllAQqll~~fGI~~~~n----l~d~~n~i~~ll~llGVvqD 59 (80)
T COG5546 17 ILGAIFLLAQQLLGWFGIKLPSN----LADIANTIVTLLVLLGVVQD 59 (80)
T ss_pred HHHHHHHHHHHHHHHeeeecchh----HHHHHHHHHHHHHHHhcccC
Confidence 34555555555666778766543 22233344445555555554
No 297
>PRK10026 arsenate reductase; Provisional
Probab=26.79 E-value=1.3e+02 Score=24.82 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=30.1
Q ss_pred ceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcC
Q 026661 148 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 199 (235)
Q Consensus 148 gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~ 199 (235)
.+++|+-|-|+-|++.+..+.+. .-.+.++|.-.+... .....++.++.|
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~-gi~~~~~d~~~~ppt-~~eL~~~l~~~g 52 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNS-GTEPTIIHYLETPPT-RDELVKLIADMG 52 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHC-CCCcEEEeeeCCCcC-HHHHHHHHHhCC
Confidence 46789999999999999999762 222334444322211 112455555554
No 298
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=26.44 E-value=2.8e+02 Score=25.35 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=60.0
Q ss_pred HHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE-CCE-EecC
Q 026661 138 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQ-VLSG 215 (235)
Q Consensus 138 ~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i-nG~-~y~G 215 (235)
.+|.+.+...++.++|+..|+..--.|.++.+-+.+.+..||...++-.. .++++....-+.++=+++ |+= --.+
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---l~~l~~~l~~~~~kFIlf~DDLsFe~~ 120 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---LPELLDLLRDRPYKFILFCDDLSFEEG 120 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---HHHHHHHHhcCCCCEEEEecCCCCCCC
Confidence 46677777888999999999999999999988666778899998765333 667776655455555555 543 2334
Q ss_pred CCChHHHHHHh
Q 026661 216 EQDLSDLAKAS 226 (235)
Q Consensus 216 ~~~le~L~~~s 226 (235)
+.+...|+.+.
T Consensus 121 d~~yk~LKs~L 131 (249)
T PF05673_consen 121 DTEYKALKSVL 131 (249)
T ss_pred cHHHHHHHHHh
Confidence 44455555544
No 299
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=26.04 E-value=1.3e+02 Score=19.64 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=12.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 026661 23 INESYGRLILLGSSTSMAAASAYFL 47 (235)
Q Consensus 23 ~~~~~~~~~l~~~st~ma~fS~yl~ 47 (235)
+++....|.|+.+-.-...||+|+.
T Consensus 12 LNRTSLY~GLllifvl~vLFssyff 36 (37)
T PF02419_consen 12 LNRTSLYWGLLLIFVLAVLFSSYFF 36 (37)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHhhhhhc
Confidence 4433344555444444445999875
No 300
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.77 E-value=15 Score=33.28 Aligned_cols=9 Identities=33% Similarity=1.246 Sum_probs=7.0
Q ss_pred ecCCCHHHH
Q 026661 153 GAFWCSHCL 161 (235)
Q Consensus 153 gA~WCphC~ 161 (235)
..+|||+|+
T Consensus 264 ~t~~CP~CQ 272 (272)
T TIGR00577 264 GTHFCPQCQ 272 (272)
T ss_pred CCEECCCCC
Confidence 467999995
No 301
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=25.63 E-value=93 Score=25.68 Aligned_cols=52 Identities=19% Similarity=0.075 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhhHH-HHHHHHHHHHh
Q 026661 26 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSA-LLSFSLFFISL 77 (235)
Q Consensus 26 ~~~~~~l~~~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa-~lS~~L~~l~~ 77 (235)
.++|+++=..+++.|.++.|+-|-.-|+-....-..|+.+- +||..|.+.+.
T Consensus 26 ~d~kL~lg~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiLs~il~~~~~ 78 (162)
T PF06703_consen 26 TDIKLALGYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFILSGILTLYSY 78 (162)
T ss_pred EcHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888877666654556666666665 55555555554
No 302
>PRK15113 glutathione S-transferase; Provisional
Probab=25.48 E-value=2.7e+02 Score=23.43 Aligned_cols=62 Identities=6% Similarity=-0.047 Sum_probs=37.4
Q ss_pred cceEEEecC--CCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE
Q 026661 147 IGAKMYGAF--WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 211 (235)
Q Consensus 147 ~gav~ygA~--WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~ 211 (235)
...+.|+.+ .||.|++..-.+.+. ...++.++.+...... +.++.-+..=-..+|+++.+|.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~-gi~~e~~~v~~~~~~~--~~~~~~~~nP~g~VP~L~~~~~ 67 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEK-GLPFELKTVDLDAGEH--LQPTYQGYSLTRRVPTLQHDDF 67 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHc-CCCCeEEEeCCCCccc--cCHHHHhcCCCCCCCEEEECCE
Confidence 446788865 599998888777652 2334566666432111 1234433344455899998875
No 303
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=25.01 E-value=18 Score=32.83 Aligned_cols=10 Identities=30% Similarity=1.149 Sum_probs=7.8
Q ss_pred ecCCCHHHHH
Q 026661 153 GAFWCSHCLE 162 (235)
Q Consensus 153 gA~WCphC~~ 162 (235)
.++|||.|+.
T Consensus 263 ~t~~CP~CQ~ 272 (272)
T PRK14810 263 SSHYCPHCQK 272 (272)
T ss_pred ccEECcCCcC
Confidence 4689999973
No 304
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.98 E-value=1.1e+02 Score=28.94 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=49.5
Q ss_pred cceEEEecC----CCHHHHHHHHHhhHHhh---------c--cCcEEEccCCCCCCchhhHHHhHhcCCCccceeEE---
Q 026661 147 IGAKMYGAF----WCSHCLEQKQMFGSEAV---------K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--- 208 (235)
Q Consensus 147 ~gav~ygA~----WCphC~~~k~~f~k~A~---------~--~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~i--- 208 (235)
.-++||+|- -|+-|++..++|.-.|. + ++=+-++|-|+ .++.-++.++++.|++.+
T Consensus 62 s~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e------~p~~Fq~l~ln~~P~l~~f~P 135 (331)
T KOG2603|consen 62 SLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE------SPQVFQQLNLNNVPHLVLFSP 135 (331)
T ss_pred EEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc------cHHHHHHhcccCCCeEEEeCC
Confidence 347789884 69999999999876432 1 22233444432 368899999999999988
Q ss_pred -CCE------E--ecCCCChHHHHHHhCC
Q 026661 209 -NGQ------V--LSGEQDLSDLAKASGF 228 (235)
Q Consensus 209 -nG~------~--y~G~~~le~L~~~sg~ 228 (235)
.|. - +.=+.+.|.+++|.-.
T Consensus 136 ~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~ 164 (331)
T KOG2603|consen 136 AKGNKKRSDQMDQQDLGFEAEQIAQFVAD 164 (331)
T ss_pred CccccccCccchhhhcchhHHHHHHHHHH
Confidence 221 1 1112337778777654
No 305
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.59 E-value=87 Score=27.63 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=27.0
Q ss_pred HHHhHhcCCCccceeEECCEEecCCCChHHHHH
Q 026661 192 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 224 (235)
Q Consensus 192 ~~lC~~~~I~gyPTw~inG~~y~G~~~le~L~~ 224 (235)
.+...+.|+=|-|||+++++.|=|..-+..|..
T Consensus 166 ~~~a~srGvfGaPtfivg~q~fwGqDRL~~lea 198 (203)
T COG3917 166 TAEAVSRGVFGAPTFIVGDQLFWGQDRLYQLEA 198 (203)
T ss_pred HHHHHhcCccCCCeEEECCeeeechhHHHHHHH
Confidence 455667899999999999999999887766654
No 306
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.43 E-value=80 Score=25.57 Aligned_cols=14 Identities=36% Similarity=0.869 Sum_probs=8.4
Q ss_pred CHHHHHHHHHhhHH
Q 026661 157 CSHCLEQKQMFGSE 170 (235)
Q Consensus 157 CphC~~~k~~f~k~ 170 (235)
||.|+++-.++|++
T Consensus 72 CP~C~K~TKmLGr~ 85 (114)
T PF11023_consen 72 CPNCGKQTKMLGRV 85 (114)
T ss_pred CCCCCChHhhhchh
Confidence 66666666666653
No 307
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=24.02 E-value=1.5e+02 Score=20.60 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=21.4
Q ss_pred HHHhHhcCCCc--cceeEECCEEecCCCChHHH
Q 026661 192 AKACSDAKIEG--FPTWVINGQVLSGEQDLSDL 222 (235)
Q Consensus 192 ~~lC~~~~I~g--yPTw~inG~~y~G~~~le~L 222 (235)
...|++.|+.. ==.+.++|+++.+.++++++
T Consensus 28 ~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~ 60 (72)
T PF11976_consen 28 EKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL 60 (72)
T ss_dssp HHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred HHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence 45566666654 23366699999999999886
No 308
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=23.56 E-value=73 Score=23.55 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=15.9
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcCCC
Q 026661 86 QKVLGVQLCIASLVVAALSTSYSSI 110 (235)
Q Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~ 110 (235)
+.+++.+++|+++.++ ++++|...
T Consensus 3 ~d~iLi~ICVaii~lI-lY~iYnr~ 26 (68)
T PF05961_consen 3 GDFILIIICVAIIGLI-LYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhcc
Confidence 4566677777766555 47788774
No 309
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=23.41 E-value=27 Score=29.53 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHhh
Q 026661 156 WCSHCLEQKQMFG 168 (235)
Q Consensus 156 WCphC~~~k~~f~ 168 (235)
-||||+.+.|.+.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 4999999988664
No 310
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=23.30 E-value=1.3e+02 Score=24.31 Aligned_cols=7 Identities=14% Similarity=0.396 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 026661 42 ASAYFLY 48 (235)
Q Consensus 42 fS~yl~y 48 (235)
.++.+.+
T Consensus 45 ~~gii~f 51 (145)
T PF09925_consen 45 GLGIILF 51 (145)
T ss_pred HHHHHHH
Confidence 3333333
No 311
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=23.17 E-value=26 Score=29.53 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHhh
Q 026661 156 WCSHCLEQKQMFG 168 (235)
Q Consensus 156 WCphC~~~k~~f~ 168 (235)
-||||+.+.|.+.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 4999999988664
No 312
>PRK10445 endonuclease VIII; Provisional
Probab=22.96 E-value=20 Score=32.36 Aligned_cols=9 Identities=33% Similarity=1.324 Sum_probs=6.9
Q ss_pred ecCCCHHHH
Q 026661 153 GAFWCSHCL 161 (235)
Q Consensus 153 gA~WCphC~ 161 (235)
+.+|||+|+
T Consensus 254 ~t~~CP~CQ 262 (263)
T PRK10445 254 PFYWCPGCQ 262 (263)
T ss_pred CcEECCCCc
Confidence 467888886
No 313
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=2.4e+02 Score=22.59 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=45.7
Q ss_pred HHHHHHhhcccceEEE-----ecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHh-cCCCccceeEECC
Q 026661 137 ALSLAKHLHAIGAKMY-----GAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVING 210 (235)
Q Consensus 137 ~~~la~~L~~~gav~y-----gA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~-~~I~gyPTw~inG 210 (235)
...+.+..++..++.| .+|-|+-..+.-+++...-..++.+||+=.|.. .++--++ .+=..||-+.|||
T Consensus 5 ~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e-----iR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 5 LDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE-----IRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred HHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH-----HHhccHhhcCCCCCceeeECC
Confidence 4455666677777766 357788888888888764224677888854421 1111111 2333455588999
Q ss_pred EEecCCC
Q 026661 211 QVLSGEQ 217 (235)
Q Consensus 211 ~~y~G~~ 217 (235)
+...|-.
T Consensus 80 EfvGG~D 86 (105)
T COG0278 80 EFVGGCD 86 (105)
T ss_pred EEeccHH
Confidence 8766653
No 314
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.87 E-value=1.4e+02 Score=19.68 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=14.3
Q ss_pred cCCCCcccchhHHHHHHH-HHHHHHHHHHHH
Q 026661 18 SFPIGINESYGRLILLGS-STSMAAASAYFL 47 (235)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~-st~ma~fS~yl~ 47 (235)
+.+-.+++..-.|.|+.+ ..+. .||+|+.
T Consensus 9 ~q~VELNRTSLy~GlLlifvl~v-LFssYff 38 (39)
T PRK00753 9 KQPVELNRTSLYLGLLLVFVLGI-LFSSYFF 38 (39)
T ss_pred CCCceechhhHHHHHHHHHHHHH-HHHhhcc
Confidence 334344422334444444 4444 4888873
No 315
>PLN02378 glutathione S-transferase DHAR1
Probab=22.67 E-value=2e+02 Score=24.32 Aligned_cols=51 Identities=8% Similarity=-0.100 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCE
Q 026661 155 FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 211 (235)
Q Consensus 155 ~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~ 211 (235)
++||+|++..-.+... .-..+.++++... + .++.-+-.--..+|++..+|.
T Consensus 18 ~~~p~~~rv~~~L~e~-gl~~e~~~v~~~~--~---~~~~l~inP~G~VPvL~~~~~ 68 (213)
T PLN02378 18 GDCPFSQRALLTLEEK-SLTYKIHLINLSD--K---PQWFLDISPQGKVPVLKIDDK 68 (213)
T ss_pred CCCcchHHHHHHHHHc-CCCCeEEEeCccc--C---CHHHHHhCCCCCCCEEEECCE
Confidence 5699999988777542 2234456665532 1 234444455567999988875
No 316
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.45 E-value=5.7e+02 Score=22.98 Aligned_cols=29 Identities=7% Similarity=-0.112 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccchhhhhHH
Q 026661 35 SSTSMAAASAYFLYILSTNFSGATCSYCLTSA 66 (235)
Q Consensus 35 ~st~ma~fS~yl~yil~~~i~~a~C~yCl~Sa 66 (235)
.+..|+.+|+++..-..+.- .=++|+.-+
T Consensus 24 ~ta~la~~s~~~a~~~~~~~---~~~~ai~~g 52 (301)
T PF14362_consen 24 FTALLAGLSGGYALYTVFGG---PVWAAIPFG 52 (301)
T ss_pred HHHHHHHHHHHHHHHHHhcc---chHHHHHHH
Confidence 46777778877666555542 225555544
No 317
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=22.13 E-value=4e+02 Score=21.09 Aligned_cols=17 Identities=12% Similarity=0.002 Sum_probs=11.1
Q ss_pred HHHh-hHHHHHHHHHHHH
Q 026661 86 QKVL-GVQLCIASLVVAA 102 (235)
Q Consensus 86 ~~~~-~~~~~v~~~~~~~ 102 (235)
+|.+ +++++++..+...
T Consensus 70 pQalvLTaIVIg~av~a~ 87 (114)
T PRK12660 70 LQAIVLTAIVIGFGMTAF 87 (114)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 5655 6788777776443
No 318
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=22.10 E-value=1.4e+02 Score=28.46 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=28.6
Q ss_pred cccCCCChhHHHHHHhhcccceEEEecCCCHHHHHHHHHhhHHhhccCcEE
Q 026661 128 EITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYV 178 (235)
Q Consensus 128 ~itt~s~~~~~~la~~L~~~gav~ygA~WCphC~~~k~~f~k~A~~~l~~V 178 (235)
+|+..+.-...++-+.|++.|++-----+==+|.++...+-+. .+++.+|
T Consensus 109 eI~Gn~~~t~~~i~~~L~e~Gi~~G~~k~~id~~~ie~~l~~~-~~~i~WV 158 (382)
T TIGR02876 109 DITGVKGETPYEIRKQLKEMGIKPGVWKFSVDVYKLERKLLDR-VPEIMWA 158 (382)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCcCeeeCCCCHHHHHHHHHhh-CCCcEEE
Confidence 4555555567788888888886621112222577776655543 3455443
No 319
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.06 E-value=2e+02 Score=22.87 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.3
Q ss_pred eEEEecCCCHHHHHHHHHhhH
Q 026661 149 AKMYGAFWCSHCLEQKQMFGS 169 (235)
Q Consensus 149 av~ygA~WCphC~~~k~~f~k 169 (235)
+..|+-|-|.-|++.+..+.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 578999999999999999987
No 320
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=21.32 E-value=2.8e+02 Score=18.94 Aligned_cols=60 Identities=7% Similarity=-0.069 Sum_probs=36.4
Q ss_pred EEEecCCCHHHHHHHHHhhHHhhccCcEEEccCCCCCCchhhHHHhHhcCCCccceeEECCEE
Q 026661 150 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 212 (235)
Q Consensus 150 v~ygA~WCphC~~~k~~f~k~A~~~l~~Vec~~d~~n~~~k~~~lC~~~~I~gyPTw~inG~~ 212 (235)
+.|+.+..|.|++..-.+.+. ......++.+... . +.+.++.-+..-....|++..+|..
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~-~l~~~~~~~~~~~-~-~~~~~~~~~~nP~~~vP~L~~~~~~ 61 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDEL-GLPYERIDAGGQF-G-GLDTPEFLAMNPNGRVPVLEDGDFV 61 (73)
T ss_pred EEEecCCCcchHHHHHHHHHc-CCCCEEEEecccc-c-cccCHHHHhhCCCCCCCEEEECCEE
Confidence 578899999999988887752 2233445554321 0 0112344444566779999887754
No 321
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=21.16 E-value=68 Score=22.20 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=18.5
Q ss_pred hHHHHHHhhcccceEEEecCCCHHHHHH
Q 026661 136 FALSLAKHLHAIGAKMYGAFWCSHCLEQ 163 (235)
Q Consensus 136 ~~~~la~~L~~~gav~ygA~WCphC~~~ 163 (235)
......+.+++.+.... ...||+|+.+
T Consensus 57 ~~~~~~~~~~~~~~~~i-v~~c~~C~~~ 83 (85)
T PF02754_consen 57 VAKRNLKEIKEAGADTI-VTPCPSCYMQ 83 (85)
T ss_pred HHHHHHHHHHHcCCCEE-EEeChhHHHh
Confidence 34444566666666655 6899999976
No 322
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=20.91 E-value=3.8e+02 Score=20.37 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=9.0
Q ss_pred HHhcccchHHHHHH
Q 026661 75 ISLKEFSVEEIQKV 88 (235)
Q Consensus 75 l~~~g~~~~~~~~~ 88 (235)
+++.-|++.|.|+.
T Consensus 63 lal~vRRlhD~G~s 76 (120)
T PF05656_consen 63 LALTVRRLHDIGRS 76 (120)
T ss_pred HHHHhhhhhcCCCC
Confidence 44555777887764
No 323
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=20.30 E-value=6.5e+02 Score=22.78 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=20.5
Q ss_pred CcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 026661 22 GINESYGRLIL-LGSSTSMAAASAYFLYILSTNF 54 (235)
Q Consensus 22 ~~~~~~~~~~l-~~~st~ma~fS~yl~yil~~~i 54 (235)
+++ ..-|.+| ++.|.+...+.++++....+.+
T Consensus 52 ~l~-~~er~~ls~glSi~~~~~~g~~l~~~~~~i 84 (287)
T PF07760_consen 52 DLD-GIERLALSVGLSIAIVPLIGLLLNYTPWGI 84 (287)
T ss_pred CCc-HHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 344 4446655 5567777778888887776544
Done!