Query 026662
Match_columns 235
No_of_seqs 154 out of 1407
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:57:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 5.8E-81 1.3E-85 563.7 25.5 232 1-234 22-262 (363)
2 PRK05589 peptide chain release 100.0 1.2E-75 2.7E-80 533.4 27.8 230 2-234 1-235 (325)
3 PRK06746 peptide chain release 100.0 2.3E-75 5E-80 531.0 27.6 231 2-234 1-236 (326)
4 PRK07342 peptide chain release 100.0 1.6E-74 3.5E-79 527.8 27.8 231 2-234 3-238 (339)
5 TIGR00020 prfB peptide chain r 100.0 2.5E-74 5.4E-79 532.3 28.0 231 2-234 39-274 (364)
6 PRK00578 prfB peptide chain re 100.0 2.1E-73 4.6E-78 526.9 27.0 232 1-234 38-274 (367)
7 TIGR00019 prfA peptide chain r 100.0 2.6E-72 5.6E-77 517.9 27.6 230 1-234 22-260 (360)
8 PRK00591 prfA peptide chain re 100.0 2.9E-71 6.3E-76 511.1 27.7 231 1-234 21-260 (359)
9 PRK08787 peptide chain release 100.0 5.5E-69 1.2E-73 486.1 24.0 209 24-234 2-215 (313)
10 KOG2726 Mitochondrial polypept 100.0 2.5E-64 5.5E-69 463.0 23.1 222 2-234 57-287 (386)
11 COG1186 PrfB Protein chain rel 100.0 3.6E-57 7.9E-62 394.7 13.7 144 90-234 1-149 (239)
12 PRK08179 prfH peptide chain re 100.0 4.7E-53 1E-57 362.8 14.9 140 90-235 2-147 (200)
13 TIGR03072 release_prfH putativ 100.0 1.2E-52 2.7E-57 360.2 15.8 139 90-234 1-145 (200)
14 PF03462 PCRF: PCRF domain; I 100.0 1.6E-33 3.5E-38 223.2 11.6 107 51-157 5-115 (115)
15 PF00472 RF-1: RF-1 domain; I 99.7 1.7E-17 3.7E-22 131.2 3.3 45 190-234 4-51 (113)
16 PRK09256 hypothetical protein; 99.3 3.2E-12 7E-17 104.5 3.5 43 192-234 7-76 (138)
17 KOG3429 Predicted peptidyl-tRN 97.2 0.00025 5.3E-09 59.5 2.7 29 194-222 36-67 (172)
18 COG0216 PrfA Protein chain rel 82.8 7.9 0.00017 36.4 8.5 64 12-75 36-102 (363)
19 PF13710 ACT_5: ACT domain; PD 69.8 14 0.0003 25.9 5.0 38 111-148 6-43 (63)
20 PF03962 Mnd1: Mnd1 family; I 67.8 53 0.0011 28.1 9.2 110 7-120 56-167 (188)
21 KOG1760 Molecular chaperone Pr 60.3 92 0.002 25.3 9.5 70 7-76 15-101 (131)
22 PRK06737 acetolactate synthase 59.8 30 0.00066 25.4 5.4 38 111-148 16-53 (76)
23 PRK11152 ilvM acetolactate syn 57.3 25 0.00054 25.9 4.5 41 111-151 17-57 (76)
24 PF09032 Siah-Interact_N: Siah 54.8 37 0.0008 25.3 5.1 44 30-77 4-47 (79)
25 PF00587 tRNA-synt_2b: tRNA sy 51.9 47 0.001 27.1 6.0 46 101-146 121-167 (173)
26 PRK13562 acetolactate synthase 51.2 45 0.00097 25.2 5.1 34 115-148 20-54 (84)
27 PF14257 DUF4349: Domain of un 50.9 99 0.0021 27.3 8.2 39 58-96 164-203 (262)
28 PF08317 Spc7: Spc7 kinetochor 49.0 2.2E+02 0.0047 26.2 14.1 23 107-129 278-300 (325)
29 PRK11020 hypothetical protein; 45.2 1.4E+02 0.0031 23.9 7.3 24 53-76 28-51 (118)
30 PRK05431 seryl-tRNA synthetase 44.9 2.6E+02 0.0056 26.9 10.6 17 60-76 77-93 (425)
31 PF10146 zf-C4H2: Zinc finger- 44.1 2.1E+02 0.0046 25.3 9.2 24 19-42 15-38 (230)
32 KOG4657 Uncharacterized conser 43.8 79 0.0017 28.3 6.3 32 56-87 86-118 (246)
33 TIGR03545 conserved hypothetic 43.3 1E+02 0.0022 30.9 7.7 18 100-117 287-304 (555)
34 TIGR02421 QEGLA conserved hypo 40.0 49 0.0011 31.5 4.7 164 8-177 17-211 (366)
35 PF15290 Syntaphilin: Golgi-lo 40.0 1.4E+02 0.003 27.6 7.4 63 21-84 74-145 (305)
36 PF08399 VWA_N: VWA N-terminal 39.6 16 0.00035 29.3 1.2 18 209-229 56-73 (123)
37 COG0103 RpsI Ribosomal protein 39.6 19 0.00041 29.4 1.6 17 169-185 7-24 (130)
38 TIGR00634 recN DNA repair prot 39.5 2.1E+02 0.0046 28.3 9.3 64 8-74 297-364 (563)
39 PF10819 DUF2564: Protein of u 39.2 1.6E+02 0.0035 22.0 6.5 44 30-74 4-47 (79)
40 PF02403 Seryl_tRNA_N: Seryl-t 39.0 1.7E+02 0.0036 22.1 8.5 39 4-42 3-49 (108)
41 KOG3684 Ca2+-activated K+ chan 38.2 2.2E+02 0.0047 28.1 8.8 61 10-73 387-451 (489)
42 PRK05892 nucleoside diphosphat 38.1 2.2E+02 0.0048 23.5 7.9 66 5-78 4-69 (158)
43 KOG0971 Microtubule-associated 37.9 2.3E+02 0.0049 30.6 9.3 43 37-82 305-352 (1243)
44 PF03101 FAR1: FAR1 DNA-bindin 35.1 46 0.00099 24.1 3.0 36 112-147 1-37 (91)
45 PRK10869 recombination and rep 34.6 2.9E+02 0.0062 27.5 9.4 25 8-32 292-316 (553)
46 PF12325 TMF_TATA_bd: TATA ele 33.9 2.4E+02 0.0053 22.5 9.8 8 60-67 100-107 (120)
47 cd01020 TroA_b Metal binding p 33.9 1.3E+02 0.0027 26.6 6.2 20 4-23 94-113 (264)
48 PF03288 Pox_D5: Poxvirus D5 p 33.7 32 0.00068 24.9 2.0 21 105-125 22-42 (86)
49 PF03233 Cauli_AT: Aphid trans 33.6 1.4E+02 0.003 25.3 5.9 47 27-76 109-155 (163)
50 KOG1697 Mitochondrial/chloropl 33.5 34 0.00075 31.0 2.5 17 170-186 153-170 (275)
51 TIGR00414 serS seryl-tRNA synt 32.6 3.3E+02 0.0071 26.1 9.1 86 2-87 1-113 (418)
52 COG1196 Smc Chromosome segrega 32.0 7E+02 0.015 27.2 13.7 109 54-166 1004-1155(1163)
53 PF02815 MIR: MIR domain; Int 31.5 36 0.00077 28.5 2.2 23 209-232 62-84 (190)
54 smart00472 MIR Domain in ryano 31.4 32 0.0007 22.8 1.6 17 215-231 6-22 (57)
55 PF07106 TBPIP: Tat binding pr 30.7 3E+02 0.0066 22.5 8.0 25 10-34 70-94 (169)
56 cd00779 ProRS_core_prok Prolyl 30.6 1.8E+02 0.0038 25.7 6.5 51 97-147 148-198 (255)
57 cd01145 TroA_c Periplasmic bin 30.5 1.8E+02 0.0038 24.6 6.3 20 4-23 107-126 (203)
58 COG2047 Uncharacterized protei 29.6 1.9E+02 0.0041 26.1 6.4 42 4-45 191-232 (258)
59 PF08014 DUF1704: Domain of un 29.4 1.6E+02 0.0034 27.7 6.3 71 101-177 109-188 (349)
60 COG3978 Acetolactate synthase 29.2 81 0.0018 23.8 3.4 51 106-156 12-62 (86)
61 PRK08178 acetolactate synthase 29.1 1.3E+02 0.0029 23.2 4.7 33 117-149 28-60 (96)
62 PLN02678 seryl-tRNA synthetase 29.0 4.8E+02 0.01 25.4 9.7 17 60-76 82-98 (448)
63 KOG0972 Huntingtin interacting 27.9 2.7E+02 0.0058 26.1 7.2 54 21-74 272-326 (384)
64 cd04911 ACT_AKiii-YclM-BS_1 AC 27.9 24 0.00051 26.1 0.4 11 219-229 30-40 (76)
65 PRK06342 transcription elongat 27.9 2.5E+02 0.0055 23.4 6.7 16 61-76 62-77 (160)
66 PRK01026 tetrahydromethanopter 27.7 87 0.0019 23.3 3.4 29 3-31 6-34 (77)
67 PF08657 DASH_Spc34: DASH comp 27.7 4.6E+02 0.0099 23.7 9.0 25 7-31 172-199 (259)
68 PF09537 DUF2383: Domain of un 27.5 2.7E+02 0.0058 20.9 8.2 51 28-78 3-53 (111)
69 PF02815 MIR: MIR domain; Int 27.4 85 0.0019 26.2 3.8 30 205-234 126-156 (190)
70 cd00772 ProRS_core Prolyl-tRNA 27.4 1.8E+02 0.0038 25.9 6.0 51 95-145 152-205 (264)
71 PF02609 Exonuc_VII_S: Exonucl 27.2 2E+02 0.0042 19.2 5.4 16 57-72 35-50 (53)
72 PF04800 ETC_C1_NDUFA4: ETC co 27.0 54 0.0012 25.5 2.3 18 115-132 62-79 (101)
73 PF12777 MT: Microtubule-bindi 27.0 1.1E+02 0.0025 28.3 4.9 28 2-31 179-206 (344)
74 PF07888 CALCOCO1: Calcium bin 26.6 3.3E+02 0.0072 27.4 8.2 17 12-28 371-387 (546)
75 COG4026 Uncharacterized protei 26.3 2E+02 0.0043 25.9 5.9 47 60-106 167-215 (290)
76 cd00770 SerRS_core Seryl-tRNA 26.1 1.2E+02 0.0025 27.6 4.7 46 100-145 172-217 (297)
77 TIGR01219 Pmev_kin_ERG8 phosph 26.0 2.2E+02 0.0048 27.8 6.8 45 86-133 393-442 (454)
78 PF07962 Swi3: Replication For 25.0 84 0.0018 23.3 2.9 21 100-121 29-49 (83)
79 PHA03011 hypothetical protein; 24.9 3.5E+02 0.0075 21.3 8.8 45 22-72 71-115 (120)
80 PF14257 DUF4349: Domain of un 24.8 3.9E+02 0.0084 23.5 7.7 59 12-77 132-190 (262)
81 TIGR01149 mtrG N5-methyltetrah 24.6 1.1E+02 0.0024 22.3 3.3 28 4-31 4-31 (70)
82 TIGR02284 conserved hypothetic 24.5 3.7E+02 0.0081 21.5 9.6 50 29-78 3-52 (139)
83 TIGR02780 TrbJ_Ti P-type conju 23.9 5.1E+02 0.011 22.9 13.0 64 7-72 28-91 (246)
84 COG4064 MtrG Tetrahydromethano 23.6 1.3E+02 0.0028 22.1 3.5 26 4-29 7-32 (75)
85 PF15011 CK2S: Casein Kinase 2 23.5 4.4E+02 0.0096 22.0 9.3 38 91-128 114-153 (168)
86 PF04536 TPM: TLP18.3, Psb32 a 23.5 2.4E+02 0.0051 21.0 5.4 45 64-115 6-50 (119)
87 TIGR00019 prfA peptide chain r 23.3 5.9E+02 0.013 24.2 8.9 33 13-45 37-69 (360)
88 KOG0804 Cytoplasmic Zn-finger 23.0 5.2E+02 0.011 25.6 8.5 16 31-46 391-406 (493)
89 TIGR02865 spore_II_E stage II 23.0 8.7E+02 0.019 25.3 13.4 33 13-45 406-438 (764)
90 PF09177 Syntaxin-6_N: Syntaxi 22.5 3.3E+02 0.0072 20.3 8.1 40 30-72 47-86 (97)
91 PF04983 RNA_pol_Rpb1_3: RNA p 22.2 77 0.0017 25.5 2.5 28 99-126 127-154 (158)
92 PF12685 SpoIIIAH: SpoIIIAH-li 22.1 2.6E+02 0.0057 23.7 5.9 44 40-83 102-146 (196)
93 KOG1086 Cytosolic sorting prot 22.1 4E+02 0.0086 26.5 7.5 14 57-70 248-261 (594)
94 cd01018 ZntC Metal binding pro 21.9 3.1E+02 0.0067 24.1 6.5 20 4-23 111-130 (266)
95 PF05055 DUF677: Protein of un 21.7 4.8E+02 0.01 24.5 7.9 46 31-76 266-315 (336)
96 PF08317 Spc7: Spc7 kinetochor 21.4 6.4E+02 0.014 23.1 9.7 40 32-73 187-226 (325)
97 COG3890 ERG8 Phosphomevalonate 21.4 3E+02 0.0065 25.7 6.2 50 79-131 275-325 (337)
98 PRK01919 tatB sec-independent 21.1 5.2E+02 0.011 22.0 8.6 18 14-31 29-46 (169)
99 PF08350 DUF1724: Domain of un 21.1 87 0.0019 22.1 2.2 32 82-119 31-62 (64)
100 TIGR01061 parC_Gpos DNA topois 20.9 4.8E+02 0.01 27.2 8.4 41 26-72 431-471 (738)
101 PRK13729 conjugal transfer pil 20.9 4.4E+02 0.0094 26.1 7.6 53 22-74 69-122 (475)
102 PF01297 TroA: Periplasmic sol 20.4 2.5E+02 0.0055 24.3 5.6 21 3-23 90-110 (256)
103 cd01109 HTH_YyaN Helix-Turn-He 20.3 3.5E+02 0.0075 20.6 5.7 49 28-76 50-99 (113)
104 KOG2148 Exocyst protein Sec3 [ 20.2 6.1E+02 0.013 26.5 8.6 14 99-112 306-319 (867)
105 PRK06746 peptide chain release 20.2 4.9E+02 0.011 24.4 7.6 35 13-47 15-49 (326)
106 cd04790 HTH_Cfa-like_unk Helix 20.1 5E+02 0.011 21.5 7.1 99 21-125 45-161 (172)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-81 Score=563.71 Aligned_cols=232 Identities=21% Similarity=0.316 Sum_probs=221.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH----H
Q 026662 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY----E 76 (235)
Q Consensus 1 ~msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~l----e 76 (235)
+|+||++.+|++++++++++++.|..+++.|+++++..++++...+|+.+. .|+||++||++|+..++..+..| +
T Consensus 22 ~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~ema~~Ei~~~~~~~~~le~~L~ 100 (363)
T COG0216 22 LLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMREMAEEEIKELEAKIEELEEELK 100 (363)
T ss_pred HhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999998764 69999999999999999888655 4
Q ss_pred HHhcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccc
Q 026662 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (235)
Q Consensus 77 ~~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~ 156 (235)
..+||+||+|.++|+||||||+||+||++||++||+||.+||+.+||++++++.++++.||||++++.|+|.+||+.|||
T Consensus 101 ~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~I~G~gvys~LKf 180 (363)
T COG0216 101 ILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIASISGKGVYSRLKF 180 (363)
T ss_pred HhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEEEEEEeccchhhhhhh
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEE
Q 026662 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (235)
Q Consensus 157 e~Gvhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~ 231 (235)
|+|||||| +|.|+++||+||| |+|+|||+++ +..+++|+|+|||||| |||+ |||||||+|||||||+||||+|+
T Consensus 181 EsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~e-e~~ei~I~~~DlrIDt~RsSGaGGQhVNtTdSAVRiTHlPTGIvV~ 259 (363)
T COG0216 181 ESGVHRVQRVPATESQGRIHTSAATVAVLPEVE-EVEEIEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVE 259 (363)
T ss_pred ccCccceeccccccCCCceeecceeEEeccCCC-cccccccChHHceeeeeecCCCCCCCcCccchhheeeecCCceEEE
Confidence 99999999 9999999999999 9999999983 3457999999999999 9999 99999999999999999999999
Q ss_pred eec
Q 026662 232 SLG 234 (235)
Q Consensus 232 ~q~ 234 (235)
||+
T Consensus 260 cQd 262 (363)
T COG0216 260 CQD 262 (363)
T ss_pred ecc
Confidence 996
No 2
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=1.2e-75 Score=533.43 Aligned_cols=230 Identities=29% Similarity=0.505 Sum_probs=222.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~~l~ 81 (235)
|++|+||+||+++++++++++.|+.+++.|++++...++++++.+|+++ .|++|+++|.+++..+++.++++++.+||
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~--~d~e~~~~a~~e~~~l~~~l~~~e~~~l~ 78 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE--EDDEMKKEIISEVKNIKEEIDRFKIETLL 78 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999964 37889999999999999999999999999
Q ss_pred CCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccccccce
Q 026662 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (235)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~Gvh 161 (235)
++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||||++.|+|++||++|++|+|||
T Consensus 79 ~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvH 158 (325)
T PRK05589 79 SGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIH 158 (325)
T ss_pred CCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 162 rv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
||| +|||+++|||||| |+|+|+|.++ +.+++.|+++||+|+| |||| |||||||+|||||||+||||+|.||+
T Consensus 159 rv~r~s~~~~~~rr~ts~a~V~VlP~~~-~~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q~ 235 (325)
T PRK05589 159 RLVRISPFNANGKRQTSFASVEVLPELT-DDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQN 235 (325)
T ss_pred EEEEcCCCCCCCCeEeeeEEEEEecCcC-ccccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEECC
Confidence 999 9999999999999 9999999984 3457899999999999 8999 99999999999999999999999997
No 3
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=2.3e-75 Score=530.98 Aligned_cols=231 Identities=26% Similarity=0.431 Sum_probs=223.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~~l~ 81 (235)
|..|+||+|++++++++++++.|..+++.|+++.+..++++++.+|+++ +.|++|+++|.+|+..+++.++++++.+||
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~-~~d~e~~~~a~~e~~~l~~~l~~le~~~l~ 79 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKE-EYDEDLHEELESEVKGLIQEMNEYELQLLL 79 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6789999999999999999999999999999999999999999999864 358999999999999999999999999999
Q ss_pred CCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccccccce
Q 026662 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (235)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~Gvh 161 (235)
++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||
T Consensus 80 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~GvH 159 (326)
T PRK06746 80 SDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVH 159 (326)
T ss_pred CCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 162 rv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
||| +|||+++|||||| |+|+|+|.++ +++++.|+++||+|+| |||| |||||||+|||||+|+||||+|+||+
T Consensus 160 rv~Rvsp~~s~~rrhTsfa~V~v~P~~~-~~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q~ 236 (326)
T PRK06746 160 RLVRISPFDSSGRRHTSFVSCEVVPEFN-DEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQS 236 (326)
T ss_pred EEEecCCCCCCCCeEeeEEEEEEecCcC-CccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEECC
Confidence 999 9999999999999 9999999984 3578999999999999 9999 99999999999999999999999997
No 4
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=1.6e-74 Score=527.79 Aligned_cols=231 Identities=26% Similarity=0.442 Sum_probs=223.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~~l~ 81 (235)
+++|+||+||+++++++++++.|+.+++.|+++....++++++.+|++++ .|++|+++|.+++..+++.++++++..|+
T Consensus 3 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~e-~D~el~~~a~~e~~~l~~~l~~~el~~lL 81 (339)
T PRK07342 3 AEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEEE-GDKSIVEDAEKTIRDLKDEIDRRQIDALL 81 (339)
T ss_pred ccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999998754 59999999999999999999999988899
Q ss_pred CCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccccccce
Q 026662 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (235)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~Gvh 161 (235)
.+|+|.++|+|||+||+||.||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||
T Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~GvH 161 (339)
T PRK07342 82 SGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESGVH 161 (339)
T ss_pred CCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 162 rv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
||| +|||+++|||||| |+|+|+|.++ +.+++.|+++||+|+| |||| |||||||+|||||||+||||+|+||+
T Consensus 162 rv~rvsp~~~~~rrhTs~a~V~VlP~~~-~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~~~ 238 (339)
T PRK07342 162 RLVRISPYDSNARRHTSFASIWVYPVID-DNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQ 238 (339)
T ss_pred EEEecCCCCCCCCeEeEEEEEEEEcCCC-cccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEECC
Confidence 999 9999999999999 9999999984 3467899999999999 9999 99999999999999999999999997
No 5
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=2.5e-74 Score=532.30 Aligned_cols=231 Identities=31% Similarity=0.485 Sum_probs=223.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~~l~ 81 (235)
|++|+||+||+++++++++++.|..+++.|+++++.+++++++.+|+++ +.|++|+++|.+++..+.+.++++++..||
T Consensus 39 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~-e~D~e~~~~a~~e~~~l~~~l~~le~~~ll 117 (364)
T TIGR00020 39 MEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVE-EDDEETFNELDAELKALEKKLAELELRTML 117 (364)
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999999999999999999999999999864 469999999999999999999999998999
Q ss_pred CCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccccccce
Q 026662 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (235)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~Gvh 161 (235)
++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||
T Consensus 118 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvH 197 (364)
T TIGR00020 118 SGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVH 197 (364)
T ss_pred CCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 162 rv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
||| +|||+++|||||| |+|+|+|.+++ ++++.|+++||+|+| |||| |||||||+|||||||+||||+|.||+
T Consensus 198 rv~rvs~~~~~~rrhts~a~V~vlP~~~~-~~~~~i~~~d~~~~~~rssG~GGQ~VNkt~saVri~H~ptgi~v~~q~ 274 (364)
T TIGR00020 198 RLVRISPFDANGRRHTSFASVFVMPEVDD-DIDIEIKPEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQN 274 (364)
T ss_pred EEEecCCCCCCCCeEeeeEEEEEecCCCc-ccceecccccEEEEEeeCCCCCCccccccceEEEEEECCCcEEEEECC
Confidence 999 9999999999999 99999999843 478899999999999 8999 99999999999999999999999997
No 6
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=2.1e-73 Score=526.92 Aligned_cols=232 Identities=32% Similarity=0.506 Sum_probs=223.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026662 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80 (235)
Q Consensus 1 ~msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~~l 80 (235)
+|++|+||+||+++++++++++.|..+++.|++++...++++++.+|++++ .|+||+++|.+++..+++.++++++..|
T Consensus 38 ~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e-~D~el~~~a~~e~~~l~~~l~~le~~~l 116 (367)
T PRK00578 38 EAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEE-DDEETLAEAEAELKALEKKLAALELERL 116 (367)
T ss_pred HhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999999999999999999999998654 5999999999999999999999998889
Q ss_pred CCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccccccc
Q 026662 81 LRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGA 160 (235)
Q Consensus 81 ~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~Gv 160 (235)
+++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|+||
T Consensus 117 l~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg~ks~~~~i~G~~a~~~lk~E~Gv 196 (367)
T PRK00578 117 LSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATFKIKGPYAYGYLKSETGV 196 (367)
T ss_pred cCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCCeeEEEEEEeccCHHHHHhhccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 161 HCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 161 hrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
|||| +|||+++|||||| |+|+|+|.++ +..++.|+++||+|+| |||| |||||||+|||||||+||||+|.||+
T Consensus 197 Hrvqrvs~~~~~~r~hts~~~V~vlP~~~-~~~~~~i~~~dl~~~~~rssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~ 274 (367)
T PRK00578 197 HRLVRISPFDSAGRRHTSFASVEVYPEVD-DTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSAVRITHIPTGIVVQCQN 274 (367)
T ss_pred EEEEecCCCCCCCceecceeeEEecCCCC-CccccccChhhEEEEEeeCCCCCCCcccceeeEEEEEECCCcEEEEECC
Confidence 9999 9999999999999 9999999984 3457899999999999 8999 99999999999999999999999987
No 7
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=2.6e-72 Score=517.93 Aligned_cols=230 Identities=23% Similarity=0.324 Sum_probs=219.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH--
Q 026662 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS-- 78 (235)
Q Consensus 1 ~msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~-- 78 (235)
++++|+||+||+++++++++++.|+.+++.|+.++....+++++.+|+++ .|++|+++|.+++..+.+.+++++..
T Consensus 22 ~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~--~D~e~~~~a~~e~~~l~~~~~~~e~~l~ 99 (360)
T TIGR00019 22 LLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE--SDPEMREMAKEELEELEEKIEELEEQLK 99 (360)
T ss_pred HhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999864 58999999999999999999888743
Q ss_pred --hcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccc
Q 026662 79 --KLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (235)
Q Consensus 79 --~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~ 156 (235)
+||++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++
T Consensus 100 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~ 179 (360)
T TIGR00019 100 VLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKF 179 (360)
T ss_pred HHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcceEEEEEEecccHHHHHhh
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEE
Q 026662 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (235)
Q Consensus 157 e~Gvhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~ 231 (235)
|+|||||| +|||++++|+||| |+|+|+|.++ ++++.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 180 E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~--~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~SaVrl~h~ptgi~V~ 257 (360)
T TIGR00019 180 ESGVHRVQRVPVTESQGRIHTSAATVAVMPELE--EVEVDINPADLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVE 257 (360)
T ss_pred cCeeEEEECCCCCCCCCCeecceeEEEEEcCCC--ccccccCcccEEEEEEECCCCCCCCcCceeeeEEEEECCCcEEEE
Confidence 99999999 9999999999999 9999999984 367899999999999 8999 99999999999999999999999
Q ss_pred eec
Q 026662 232 SLG 234 (235)
Q Consensus 232 ~q~ 234 (235)
||+
T Consensus 258 ~~~ 260 (360)
T TIGR00019 258 CQD 260 (360)
T ss_pred ECC
Confidence 986
No 8
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=2.9e-71 Score=511.11 Aligned_cols=231 Identities=23% Similarity=0.326 Sum_probs=219.7
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH---
Q 026662 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM--- 77 (235)
Q Consensus 1 ~msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~--- 77 (235)
+|++|+||+||+++++++++++.|+.+++.|+.+....++++++.+|+++ ++|++|++++.+++..+...+++++.
T Consensus 21 ~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~-e~D~~~~~~~~~e~~~l~~~l~~~e~~l~ 99 (359)
T PRK00591 21 LLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEE-ESDPEMREMAKEELKELEERLEELEEELK 99 (359)
T ss_pred HhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999864 36999999999999999999988773
Q ss_pred -HhcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccc
Q 026662 78 -SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (235)
Q Consensus 78 -~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~ 156 (235)
.+||++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++
T Consensus 100 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~Lk~ 179 (359)
T PRK00591 100 ILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKF 179 (359)
T ss_pred HHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCceeEEEEEEecccHHHHHhh
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEE
Q 026662 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (235)
Q Consensus 157 e~Gvhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~ 231 (235)
|+|||||| +|||++++|+||| |+|+|+|.+++ +++.|+++||+|+| |||| |||||||+|||||||+||||+|.
T Consensus 180 E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~--~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptGi~v~ 257 (359)
T PRK00591 180 ESGVHRVQRVPATESQGRIHTSAATVAVLPEAEE--VEVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVE 257 (359)
T ss_pred cCeeEEEEeeCCCCCCCceecceEEEEEEcCCCc--cccccCcccEEEEEEECCCCCCCCccceeeeEEEEECCCcEEEE
Confidence 99999999 9999999999999 99999999843 68899999999999 8999 99999999999999999999999
Q ss_pred eec
Q 026662 232 SLG 234 (235)
Q Consensus 232 ~q~ 234 (235)
||+
T Consensus 258 ~~~ 260 (359)
T PRK00591 258 CQD 260 (359)
T ss_pred ECC
Confidence 986
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=5.5e-69 Score=486.14 Aligned_cols=209 Identities=30% Similarity=0.396 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecCCCchHH
Q 026662 24 SLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103 (235)
Q Consensus 24 l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~~l~~~~~D~~~~~leI~aG~GG~Ea 103 (235)
|+..++.|+.+...++|++.+++|++++ .|++|++++.+++..++..++++++..||++|+|.++|+|||+||+||+||
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~~-~d~e~~~~~~~e~~~l~~~~~~le~~~lL~~~~D~~~a~leI~aG~GG~Ea 80 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAESE-QDEDTALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEA 80 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcEEEEECCCCcHHH
Confidence 6778999999999999999999999764 699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccccccceeEE-cCCCCCCCCcccc-eeEE
Q 026662 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATL-ACVD 181 (235)
Q Consensus 104 ~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~Gvhrv~-~~~~~~~~r~~ts-~~V~ 181 (235)
++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||||| +|||+++|||||| |+|+
T Consensus 81 ~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfasV~ 160 (313)
T PRK08787 81 QDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVF 160 (313)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999999 9999
Q ss_pred eeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 182 VVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 182 v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
|+|.++ +.+++.|+++||+|+| |||| |||||||+|||||||+||||+|.||+
T Consensus 161 V~P~~~-~~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~ 215 (313)
T PRK08787 161 VSPEVD-DNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQT 215 (313)
T ss_pred EecCcC-cccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECC
Confidence 999984 4568899999999999 8999 99999999999999999999999997
No 10
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-64 Score=462.96 Aligned_cols=222 Identities=31% Similarity=0.488 Sum_probs=192.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH----HHHHHH
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKL----LDQYEM 77 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~----l~~le~ 77 (235)
+++.++|+|+.+...+ +..|......++.+.. ++.|.. + .+|++|.++|.+|+..+.+. +.+|++
T Consensus 57 ~~~~~~~~~~~~l~~~---~~~l~~~~~~~~~~~~----lk~l~~---~-~e~e~~~~~a~~E~~~~~~~i~~~~~~l~~ 125 (386)
T KOG2726|consen 57 SNDSDLWDDPAELDEV---LNALSDRMKLVRELKS----LKSLIK---E-GEDEDMDELAEEEAEEISKEIERSLHELEL 125 (386)
T ss_pred hchhhhhhhhHHHHHH---HHHHHHHHHHHHHhhh----HHHHHh---h-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889887743333 3333333333333222 444444 3 35888999998888776655 467789
Q ss_pred HhcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeecccccccccc
Q 026662 78 SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157 (235)
Q Consensus 78 ~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e 157 (235)
.+||++|||.++|+|||+||+||+||++|+.+|++||.+||+++||++++++..+++.+||++|+++|+|.++|++|++|
T Consensus 126 ~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~ayg~l~~E 205 (386)
T KOG2726|consen 126 SLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESAYGYLKFE 205 (386)
T ss_pred HhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccchhheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEe
Q 026662 158 TGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQS 232 (235)
Q Consensus 158 ~Gvhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~ 232 (235)
.|||||| +|++++.||+||| ++|.|+|.+..+++.+.++++||+|+| +||| |||||||+|||||+||||||+|+|
T Consensus 206 ~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiPTGIvv~c 285 (386)
T KOG2726|consen 206 AGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIPTGIVVEC 285 (386)
T ss_pred CcccceeecCCcccccccccccceEEEeccCCCCccceecCchheeEEecccCCCCcccccccccceEEEeecCceEEEe
Confidence 9999999 9999999999999 999999999666789999999999999 8999 999999999999999999999999
Q ss_pred ec
Q 026662 233 LG 234 (235)
Q Consensus 233 q~ 234 (235)
|+
T Consensus 286 q~ 287 (386)
T KOG2726|consen 286 QE 287 (386)
T ss_pred ec
Confidence 97
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-57 Score=394.68 Aligned_cols=144 Identities=38% Similarity=0.591 Sum_probs=140.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccccccceeEE-cCCC
Q 026662 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPN 168 (235)
Q Consensus 90 ~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~Gvhrv~-~~~~ 168 (235)
|+|+|+||+||+|||+||.|||+||.|||+++||++++++..+|+.+|+||++|.|.|++||++|+.|.|||||+ +|||
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 169 GSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 169 ~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
++.|||||| ++|.|+|.++ ..+++.|+++||+|+| |||| |||||||+|||||||+||||+|.||.
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~-~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~ 149 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELD-ISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQN 149 (239)
T ss_pred CcCcccccceeeeeecCCCC-cccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHH
Confidence 999999999 9999999996 5678999999999999 9999 99999999999999999999999985
No 12
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=4.7e-53 Score=362.80 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=134.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCC-CceeEEEEEEeeccccccccccccceeEE-cCC
Q 026662 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN-GGVKSATIEFEFEYAFGYLSGETGAHCLI-NFP 167 (235)
Q Consensus 90 ~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~-~g~k~~~~~i~g~~a~~~l~~e~Gvhrv~-~~~ 167 (235)
++|||+||+||+||++||++||+||.+||+++||++++++..+++. +|||||++.|+|+++|++|+.|.|+|+|+ .||
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 6999999999999999999999999999999999999999999987 56999999999999999999999999999 999
Q ss_pred CCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeecC
Q 026662 168 NGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLGA 235 (235)
Q Consensus 168 ~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~~ 235 (235)
|+++++|||| ++|.|+|.. +.|+++||+|+| +||| |||||||+|||||+|+||||+|.||+.
T Consensus 82 ~~~~~~R~~s~~~V~v~~~~------~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~ 147 (200)
T PRK08179 82 YRPHHGRKNWFVGIGRFSAD------EEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSE 147 (200)
T ss_pred CCCCCCceEEEEEEEEeCCc------CccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCC
Confidence 9999999999 999999763 578999999999 9999 999999999999999999999999973
No 13
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=1.2e-52 Score=360.18 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=133.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCC-CceeEEEEEEeeccccccccccccceeEE-cCC
Q 026662 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN-GGVKSATIEFEFEYAFGYLSGETGAHCLI-NFP 167 (235)
Q Consensus 90 ~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~-~g~k~~~~~i~g~~a~~~l~~e~Gvhrv~-~~~ 167 (235)
++|||+||+||+||++||++||+||.+||+++||++++++..+++. +|||||+|.|+|+++|++|+.|.|+|+|+ .||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 4899999999999999999999999999999999999999999986 56999999999999999999999999999 999
Q ss_pred CCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 168 NGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 168 ~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
++++++|||| ++|.|+|. +++|+++||+|+| |||| |||||||+|||||+|+||||+|.||+
T Consensus 81 ~r~~~~R~ts~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~ 145 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSA------SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQS 145 (200)
T ss_pred CCCCCCeeEEEEEEEEecC------ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECC
Confidence 9999999999 99999985 2568999999999 9999 99999999999999999999999997
No 14
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=100.00 E-value=1.6e-33 Score=223.22 Aligned_cols=107 Identities=34% Similarity=0.478 Sum_probs=98.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEE
Q 026662 51 EAIDYGLFKRAYRASLDVSKLLDQYEMS----KLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126 (235)
Q Consensus 51 ~~~D~el~~~a~ee~~~l~~~l~~le~~----~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~ 126 (235)
.++|+||+++|.+++..+.+.+++++.. ++|++++|..+|+|||+||+||+||++||++||+||++||+++||+++
T Consensus 5 ~~~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~~~ 84 (115)
T PF03462_consen 5 EEEDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWKVE 84 (115)
T ss_dssp CCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3579999999999999999999888755 788999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCCceeEEEEEEeecccccccccc
Q 026662 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157 (235)
Q Consensus 127 ~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e 157 (235)
+++..+++.+|+|+|++.|+|++||++||+|
T Consensus 85 ~l~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 85 VLDYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred EEecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 9999999999999999999999999999997
No 15
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=99.68 E-value=1.7e-17 Score=131.18 Aligned_cols=45 Identities=31% Similarity=0.514 Sum_probs=41.6
Q ss_pred CCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 190 SPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 190 ~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
..++.|+++||+|++ |||| |||||||+|+|||+|+||||+|.||+
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~ 51 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQE 51 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEES
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcc
Confidence 356889999999999 9999 99999999999999999999999996
No 16
>PRK09256 hypothetical protein; Provisional
Probab=99.26 E-value=3.2e-12 Score=104.52 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=38.7
Q ss_pred CCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEe------ec---------------C--c-eEEEeec
Q 026662 192 DLQISDEDLLFSS--PSLP-GERQSIAKPAACIQH------IP---------------T--G-IAVQSLG 234 (235)
Q Consensus 192 ~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H------~P---------------T--G-i~V~~q~ 234 (235)
++.|+++||++.+ |||| |||||||+|+|+|+| +| | | |+|.||+
T Consensus 7 ~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~ 76 (138)
T PRK09256 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQE 76 (138)
T ss_pred cCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECC
Confidence 4678999999999 9999 999999999999996 77 3 5 9999987
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00025 Score=59.49 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=23.3
Q ss_pred cCCCCCeEEec--CCCC-CCcccCCCCeeEEE
Q 026662 194 QISDEDLLFSS--PSLP-GERQSIAKPAACIQ 222 (235)
Q Consensus 194 ~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~ 222 (235)
.|+.+.|.|.+ |||| ||||||++|-|=|.
T Consensus 36 ~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vr 67 (172)
T KOG3429|consen 36 KIPLDQLEISYSRSSGPGGQNVNKVNTKVEVR 67 (172)
T ss_pred CCchhheEEEEeecCCCCCcccccccceEEEE
Confidence 34556677777 9999 99999999988765
No 18
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=82.81 E-value=7.9 Score=36.44 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhhccccHHHHHHHHHHHHHHHHHHHHH
Q 026662 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQ---LAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (235)
Q Consensus 12 ~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~e---l~~~~~~D~el~~~a~ee~~~l~~~l~~l 75 (235)
.+..+=..+|.++...+..|++....++++++|+. ..++.+.-.+-+..++..+..|+++|+.|
T Consensus 36 ~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 36 RKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455578899999999999999999999999987 44443333455778888888898888655
No 19
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=69.76 E-value=14 Score=25.85 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeec
Q 026662 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFE 148 (235)
Q Consensus 111 ~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~ 148 (235)
+........++||+++-+...+.+..|+..+++.+.|.
T Consensus 6 L~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 6 LNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp HHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred HHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 34445566789999999999998888999999999993
No 20
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.81 E-value=53 Score=28.07 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 026662 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPND 86 (235)
Q Consensus 7 ~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~~l~~~~~D 86 (235)
+|+=|..+... ....+..+.....+++..+.+++.-++.+..+..+.+-+....+++..+++.+.+|+..+--....|
T Consensus 56 YWsFps~~~~~--~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D 133 (188)
T PF03962_consen 56 YWSFPSQAKQK--RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSEND 133 (188)
T ss_pred EEecChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46666555432 2333334444555555566666655554443334556677777888888887777764433111111
Q ss_pred cCCceEEEec--CCCchHHHHHHHHHHHHHHHHHHh
Q 026662 87 VEGASVTIKA--GSNGICPEIWAEQLLNMYVRWADK 120 (235)
Q Consensus 87 ~~~~~leI~a--G~GG~Ea~~~a~~L~~my~~~a~~ 120 (235)
... +-++.- -.-=..|..|+..++- ...|+.+
T Consensus 134 p~~-i~~~~~~~~~~~~~anrwTDNI~~-l~~~~~~ 167 (188)
T PF03962_consen 134 PEK-IEKLKEEIKIAKEAANRWTDNIFS-LKSYLKK 167 (188)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHH
Confidence 100 000000 0112456777777764 4555554
No 21
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=60.29 E-value=92 Score=25.33 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cHHHHHHHHHHHHHHH
Q 026662 7 LWDDPTKSNEVLVKLAD---SLKVVNALKDLRYKAEEAKLIAQLAEMEAI--------------DYGLFKRAYRASLDVS 69 (235)
Q Consensus 7 ~WdD~~ka~~~~~el~~---l~~~~~~~~~~~~~~~e~~~l~el~~~~~~--------------D~el~~~a~ee~~~l~ 69 (235)
.|.|+.+..+.++-.++ ++.-+..-+.....++|+..=++|+-++.. -+.+.+++++.-+.+.
T Consensus 15 t~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~ 94 (131)
T KOG1760|consen 15 TFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLE 94 (131)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHH
Confidence 47787766666664444 444444444444444555444455532210 1234455555555555
Q ss_pred HHHHHHH
Q 026662 70 KLLDQYE 76 (235)
Q Consensus 70 ~~l~~le 76 (235)
+.++.++
T Consensus 95 k~i~~le 101 (131)
T KOG1760|consen 95 KEIEELE 101 (131)
T ss_pred HHHHHHH
Confidence 5555544
No 22
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=59.84 E-value=30 Score=25.43 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeec
Q 026662 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFE 148 (235)
Q Consensus 111 ~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~ 148 (235)
+........++||+++-+...+.+..|+...++.+.|.
T Consensus 16 L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~ 53 (76)
T PRK06737 16 LLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT 53 (76)
T ss_pred HHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC
Confidence 44445566789999999999988889999999998875
No 23
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=57.30 E-value=25 Score=25.85 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeecccc
Q 026662 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAF 151 (235)
Q Consensus 111 ~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~ 151 (235)
+........++||+++-++..+.+..++...++.+.++...
T Consensus 17 L~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i 57 (76)
T PRK11152 17 LERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPI 57 (76)
T ss_pred HHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchH
Confidence 33445566789999999999998888999999999765443
No 24
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=54.77 E-value=37 Score=25.29 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 026662 30 ALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM 77 (235)
Q Consensus 30 ~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~ 77 (235)
.+.+++.+++|++.|++.+. -+-.+..+..++..++..|..++.
T Consensus 4 ~i~eL~~Dl~El~~Ll~~a~----R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 4 QIEELQLDLEELKSLLEQAK----RKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999888764 456888899999999988877764
No 25
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=51.95 E-value=47 Score=27.13 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC-eEEEEecccCCCCceeEEEEEEe
Q 026662 101 ICPEIWAEQLLNMYVRWADKEGY-RGRVVDKCCCKNGGVKSATIEFE 146 (235)
Q Consensus 101 ~Ea~~~a~~L~~my~~~a~~~g~-~~~~~~~~~~~~~g~k~~~~~i~ 146 (235)
.++..+...+++.|.++.+.-|+ .+++.....++.+++.+.+..++
T Consensus 121 ~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e 167 (173)
T PF00587_consen 121 EQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDIE 167 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccHH
Confidence 88999999999999999999999 99999999988777666665554
No 26
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=51.17 E-value=45 Score=25.17 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=29.2
Q ss_pred HHHHHhcCCeEEEEecccCCCCceeEEEEEEe-ec
Q 026662 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFE-FE 148 (235)
Q Consensus 115 ~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~-g~ 148 (235)
.....++||+++-+...+.+..|+...++.+. |+
T Consensus 20 t~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d 54 (84)
T PRK13562 20 TSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD 54 (84)
T ss_pred HHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC
Confidence 34445799999999999999999999999997 75
No 27
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=50.86 E-value=99 Score=27.28 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCCCCCcCCceEEEec
Q 026662 58 FKRAYRASLDVSKLLDQYEMSK-LLRGPNDVEGASVTIKA 96 (235)
Q Consensus 58 ~~~a~ee~~~l~~~l~~le~~~-l~~~~~D~~~~~leI~a 96 (235)
.-.++.++.+++.+|+.++-.+ .+.+..+...+.|.+.+
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l~~ 203 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISLYE 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEEEe
Confidence 3344555666666666555322 34444555555565555
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.96 E-value=2.2e+02 Score=26.21 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEe
Q 026662 107 AEQLLNMYVRWADKEGYRGRVVD 129 (235)
Q Consensus 107 a~~L~~my~~~a~~~g~~~~~~~ 129 (235)
+..|...|..+....||++.-++
T Consensus 278 v~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 278 VKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHCcEEEEEe
Confidence 56788889999999999998886
No 29
>PRK11020 hypothetical protein; Provisional
Probab=45.24 E-value=1.4e+02 Score=23.85 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 026662 53 IDYGLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 53 ~D~el~~~a~ee~~~l~~~l~~le 76 (235)
.|.++......|+..+.++|..+.
T Consensus 28 gd~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 28 GDAEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999998887663
No 30
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.87 E-value=2.6e+02 Score=26.86 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026662 60 RAYRASLDVSKLLDQYE 76 (235)
Q Consensus 60 ~a~ee~~~l~~~l~~le 76 (235)
.+.++++.+++.+.+++
T Consensus 77 ~l~~~~~~~~~~~~~~~ 93 (425)
T PRK05431 77 ELKEEIKALEAELDELE 93 (425)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666665554
No 31
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=44.12 E-value=2.1e+02 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 026662 19 VKLADSLKVVNALKDLRYKAEEAK 42 (235)
Q Consensus 19 ~el~~l~~~~~~~~~~~~~~~e~~ 42 (235)
+-.+.|...++.++....-++|++
T Consensus 15 k~k~~i~~e~~~~e~ee~~L~e~~ 38 (230)
T PF10146_consen 15 KLKNEILQEVESLENEEKCLEEYR 38 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 32
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.82 E-value=79 Score=28.28 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCc
Q 026662 56 GLFKRAYRASLDVSKLLDQYEMS-KLLRGPNDV 87 (235)
Q Consensus 56 el~~~a~ee~~~l~~~l~~le~~-~l~~~~~D~ 87 (235)
+..--+..++...++.++.+... -+++.++|+
T Consensus 86 ~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd 118 (246)
T KOG4657|consen 86 ARQMGIEQEIKATQSELEVLRRNLQLLKEEKDD 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445556667777666665532 355556664
No 33
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.30 E-value=1e+02 Score=30.91 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q 026662 100 GICPEIWAEQLLNMYVRW 117 (235)
Q Consensus 100 G~Ea~~~a~~L~~my~~~ 117 (235)
|.+...|+..++..|.+.
T Consensus 287 g~~i~~~~~~~~~~y~~~ 304 (555)
T TIGR03545 287 GPEIRKYLQKFLKYYDQA 304 (555)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 788889999998888883
No 34
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=40.02 E-value=49 Score=31.48 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHH-HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH-------
Q 026662 8 WDDPTKSNEVLVKLADSLKVVNA---LKDLRYKAEEA-KLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE------- 76 (235)
Q Consensus 8 WdD~~ka~~~~~el~~l~~~~~~---~~~~~~~~~e~-~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le------- 76 (235)
|.+|-+....-++...+...... |+.+.-+..+. +++..+..+.-.|+.+.+...+.+.++...++=|+
T Consensus 17 ~~~pvn~~~~~~~f~~~p~~~~p~f~yr~L~~d~~~~k~~l~~l~~e~i~d~~l~~l~r~~~~e~~~~i~mL~~~Gt~~F 96 (366)
T TIGR02421 17 WVTPTNEPFLQSRFRDNPFSYQPEFQYRPLPFDVAETKRELYSLPIDIIRDPPLGQLYREKQDEYDLVIDLLESIGTATF 96 (366)
T ss_pred CCchhhHHHHHHHHhhCCCCCCCccccCCCCCCHHHHHHHHHhhHHhhccChhHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 67777776666665555433221 21221111111 12222222222467777777777777776664443
Q ss_pred --HHh-cCCCCCC----cCCceEEEec-----CCC-chHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCC-CCceeEEE
Q 026662 77 --MSK-LLRGPND----VEGASVTIKA-----GSN-GICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCK-NGGVKSAT 142 (235)
Q Consensus 77 --~~~-l~~~~~D----~~~~~leI~a-----G~G-G~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~-~~g~k~~~ 142 (235)
..+ +...|.| ....+++..+ -.+ ...|..++..+-++...|.....+++++-+.-... ..|-+ +
T Consensus 97 ~~~S~~lYG~p~~~~~~~a~~il~~~~~~~~~~~~~~~~A~~a~~~~~~~~~~y~~~~~~~V~~sd~l~a~a~v~~~--~ 174 (366)
T TIGR02421 97 LYNSLRLYGAPSDALIGNAPFLLELDARAMEEEEQAPVSATEAAEILQQRLEDYFGEETIRVTLSDDLPAGAMVSGD--K 174 (366)
T ss_pred HHHHHHHcCCCCccccccchhHHhhccccccccccCCcCHHHHHHHHHHHHHHhCCCCceEEEECcchhHHHhccCC--e
Confidence 222 3322222 1223333211 111 35677788888888888876655666644432222 12322 4
Q ss_pred EEEeec------cccccccccccceeEEcCCCCCCCCcccc
Q 026662 143 IEFEFE------YAFGYLSGETGAHCLINFPNGSFPHEATL 177 (235)
Q Consensus 143 ~~i~g~------~a~~~l~~e~Gvhrv~~~~~~~~~r~~ts 177 (235)
+.|.-. .+..++.+|.|||-+. -=+|+.|.|
T Consensus 175 l~i~~~a~fs~~~l~~L~~HEigvH~~T----~~Ng~~Qp~ 211 (366)
T TIGR02421 175 LKLNSDAMFSERDLEALIHHEIGVHLLT----TLNGRAQPL 211 (366)
T ss_pred EEECCCCCcCHHHHHHHHHHhHHhhhhh----ccccccCch
Confidence 555543 4567889999999887 224666776
No 35
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.01 E-value=1.4e+02 Score=27.60 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=35.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccHH--------HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 026662 21 LADSLKVVNALKDLRYKAEEAKLIA-QLAEMEAIDYG--------LFKRAYRASLDVSKLLDQYEMSKLLRGP 84 (235)
Q Consensus 21 l~~l~~~~~~~~~~~~~~~e~~~l~-el~~~~~~D~e--------l~~~a~ee~~~l~~~l~~le~~~l~~~~ 84 (235)
...|+.-.+.+++-...++|++.-+ .|= ++=.++| -+++|..||++|++.++.+...+..+|+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMr-EDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMR-EDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 3455556666666666666666322 221 1111122 2567888888888888776666665543
No 36
>PF08399 VWA_N: VWA N-terminal; InterPro: IPR013608 This domain is found at the N terminus of proteins containing von Willebrand factor type A (VWA, IPR002035 from INTERPRO) and Cache (IPR004010 from INTERPRO) domains. It has been found in vertebrates, Drosophila melanogaster (Fruit fly) and Caenorhabditis elegans but has not yet been identified in other eukaryotes. It is probably involved in the function of some voltage-dependent calcium channel subunits [].
Probab=39.65 E-value=16 Score=29.33 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.6
Q ss_pred CCcccCCCCeeEEEeecCceE
Q 026662 209 GERQSIAKPAACIQHIPTGIA 229 (235)
Q Consensus 209 GQhVNkteSAVRi~H~PTGi~ 229 (235)
+..||++.||| |+||+|-
T Consensus 56 ~i~Vn~~~S~V---hiPt~Vy 73 (123)
T PF08399_consen 56 NIPVNTSQSAV---HIPTNVY 73 (123)
T ss_pred CcccccccceE---EccCCcc
Confidence 34999999974 8899975
No 37
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=39.56 E-value=19 Score=29.39 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=13.7
Q ss_pred CCCCCcccc-eeEEeeeC
Q 026662 169 GSFPHEATL-ACVDVVPL 185 (235)
Q Consensus 169 ~~~~r~~ts-~~V~v~P~ 185 (235)
-..|||+|+ |.|.+.|-
T Consensus 7 ~~tGkRK~AvArv~l~~g 24 (130)
T COG0103 7 YTTGKRKSAVARVRLVPG 24 (130)
T ss_pred eeeccccceEEEEEEEcC
Confidence 356899999 88988776
No 38
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.50 E-value=2.1e+02 Score=28.32 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q 026662 8 WDDPTKSNEVLVKLADSLKVVNALK----DLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQ 74 (235)
Q Consensus 8 WdD~~ka~~~~~el~~l~~~~~~~~----~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~ 74 (235)
=-||.+..++..++..+..+...|. ++....++++.-++.++ ...+-.+.+.+++..+++.+.+
T Consensus 297 ~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~---~~~~~le~L~~el~~l~~~l~~ 364 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLD---DSDESLEALEEEVDKLEEELDK 364 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888888888777764 33333333332222211 2333455555555555554443
No 39
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=39.17 E-value=1.6e+02 Score=21.97 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q 026662 30 ALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQ 74 (235)
Q Consensus 30 ~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~ 74 (235)
.+++++=.++-++-+.-.+-+ ..||++++-|...+++.+.++..
T Consensus 4 d~kQve~aVetAqkmvG~AT~-smdp~~Le~A~qAve~Ar~ql~~ 47 (79)
T PF10819_consen 4 DLKQVEMAVETAQKMVGQATM-SMDPDQLEHATQAVEDAREQLSQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666655544 35777777777777776655543
No 40
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.99 E-value=1.7e+02 Score=22.08 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=19.6
Q ss_pred CCcCC-CCHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHH
Q 026662 4 NYNLW-DDPTKSNEVLVK-------LADSLKVVNALKDLRYKAEEAK 42 (235)
Q Consensus 4 dP~~W-dD~~ka~~~~~e-------l~~l~~~~~~~~~~~~~~~e~~ 42 (235)
|..++ +||+.+++-.+. +..+..+.+.|+.+...+++++
T Consensus 3 Dik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr 49 (108)
T PF02403_consen 3 DIKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELR 49 (108)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 556655554443 3444444455555555555543
No 41
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=38.15 E-value=2.2e+02 Score=28.13 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 026662 10 DPTKSNEVLVKLADSLKVVNALKDLR----YKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLD 73 (235)
Q Consensus 10 D~~ka~~~~~el~~l~~~~~~~~~~~----~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~ 73 (235)
|+.+.++.++++=. .+.++++.+ +.-+++..+.++++.-..-.|+........+.++.+|+
T Consensus 387 ~~~rlR~hQRkfL~---AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~ 451 (489)
T KOG3684|consen 387 DQARLRKHQRKFLQ---AIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQID 451 (489)
T ss_pred chHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777776322 122222222 22233455556555422223444444333344444443
No 42
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=38.06 E-value=2.2e+02 Score=23.55 Aligned_cols=66 Identities=8% Similarity=0.039 Sum_probs=38.0
Q ss_pred CcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 026662 5 YNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS 78 (235)
Q Consensus 5 P~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~ 78 (235)
...|=-+.-+.++..||..|+. ...++.+.+.++...=.+++ .--...|.++...++.++..|+..
T Consensus 4 ~~~~lT~eg~~~L~~EL~~L~~---~r~~i~~~i~~Ar~~GDlsE-----Naey~aak~~q~~~e~RI~~L~~~ 69 (158)
T PRK05892 4 KSKGLAPAARDHLEAELARLRA---RRDRLAVEVNDRGMIGDHGD-----QAEAIQRADELARLDDRINELDRR 69 (158)
T ss_pred CCCccCHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhCCCcch-----hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788888887764 23333344444444333321 222556667777777777777643
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.94 E-value=2.3e+02 Score=30.56 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhccccHHHHHH----HHHHHHHHHHHHHHHHHHh-cCC
Q 026662 37 KAEEAKLIAQLAEMEAIDYGLFKR----AYRASLDVSKLLDQYEMSK-LLR 82 (235)
Q Consensus 37 ~~~e~~~l~el~~~~~~D~el~~~----a~ee~~~l~~~l~~le~~~-l~~ 82 (235)
.+.|..+-++|+- -|+||.++ ++.|++.+++++++|+..+ +++
T Consensus 305 emad~ad~iEmaT---ldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 305 EMADTADAIEMAT---LDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445443 25555443 4445566677777776433 443
No 44
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=35.09 E-value=46 Score=24.09 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCeEEEEecccCCCCc-eeEEEEEEee
Q 026662 112 NMYVRWADKEGYRGRVVDKCCCKNGG-VKSATIEFEF 147 (235)
Q Consensus 112 ~my~~~a~~~g~~~~~~~~~~~~~~g-~k~~~~~i~g 147 (235)
+.|..||...||.+..-.......+| +..+.+.=+-
T Consensus 1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r 37 (91)
T PF03101_consen 1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSR 37 (91)
T ss_pred CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECC
Confidence 47999999999999998766654444 7777766543
No 45
>PRK10869 recombination and repair protein; Provisional
Probab=34.60 E-value=2.9e+02 Score=27.53 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHH
Q 026662 8 WDDPTKSNEVLVKLADSLKVVNALK 32 (235)
Q Consensus 8 WdD~~ka~~~~~el~~l~~~~~~~~ 32 (235)
--||.+..++..++..+..+..+|.
T Consensus 292 ~~dp~~l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 292 DLDPNRLAELEQRLSKQISLARKHH 316 (553)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3488888888888887777777664
No 46
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.93 E-value=2.4e+02 Score=22.45 Aligned_cols=8 Identities=13% Similarity=-0.056 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 026662 60 RAYRASLD 67 (235)
Q Consensus 60 ~a~ee~~~ 67 (235)
++..++.+
T Consensus 100 EL~~Dv~D 107 (120)
T PF12325_consen 100 ELRADVQD 107 (120)
T ss_pred HHHHHHHH
Confidence 33333333
No 47
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.89 E-value=1.3e+02 Score=26.64 Aligned_cols=20 Identities=45% Similarity=0.684 Sum_probs=16.7
Q ss_pred CCcCCCCHHHHHHHHHHHHh
Q 026662 4 NYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 4 dP~~WdD~~ka~~~~~el~~ 23 (235)
||=+|-||..+..+.+.+.+
T Consensus 94 dPH~Wldp~n~~~~a~~I~~ 113 (264)
T cd01020 94 NPHLWYDPETMSKVANALAD 113 (264)
T ss_pred CCceecCHhHHHHHHHHHHH
Confidence 89999999999887776554
No 48
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=33.73 E-value=32 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.767 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeE
Q 026662 105 IWAEQLLNMYVRWADKEGYRG 125 (235)
Q Consensus 105 ~~a~~L~~my~~~a~~~g~~~ 125 (235)
.....|++.|..||+..|.+-
T Consensus 22 v~~~~lY~~Y~~wc~~ng~~~ 42 (86)
T PF03288_consen 22 VPSKDLYDAYKEWCEENGYKP 42 (86)
T ss_dssp -TTTBHHHHHHHHHHHTT-S-
T ss_pred ccHHHHHHHHHHHHHHhCCCc
Confidence 345789999999999999887
No 49
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=33.63 E-value=1.4e+02 Score=25.33 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 026662 27 VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 27 ~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le 76 (235)
.+..+.+..+.+.+++....-+.+ +=....+..+.++++.+.|.+++
T Consensus 109 ~l~~L~e~snki~kLe~~~k~L~d---~Iv~~~~i~e~IKd~de~L~~I~ 155 (163)
T PF03233_consen 109 LLPTLEEISNKIRKLETEVKKLKD---NIVTEKLIEELIKDFDERLKEIR 155 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhh---hccccHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443332221 23344555566666666665554
No 50
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=33.47 E-value=34 Score=31.02 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=14.2
Q ss_pred CCCCcccc-eeEEeeeCC
Q 026662 170 SFPHEATL-ACVDVVPLF 186 (235)
Q Consensus 170 ~~~r~~ts-~~V~v~P~~ 186 (235)
..|||+++ |.|.|.|-.
T Consensus 153 ~~g~rK~a~A~V~v~~Gt 170 (275)
T KOG1697|consen 153 AVGRRKCARATVKVQPGT 170 (275)
T ss_pred eccceecceeEEEEecCc
Confidence 45899999 999997764
No 51
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.64 E-value=3.3e+02 Score=26.12 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCCcCC-CCHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHH--------HHHhhccccHH-------HHHH
Q 026662 2 VRNYNLW-DDPTKSNEVLVKLAD-----SLKVVNALKDLRYKAEEAKLIA--------QLAEMEAIDYG-------LFKR 60 (235)
Q Consensus 2 msdP~~W-dD~~ka~~~~~el~~-----l~~~~~~~~~~~~~~~e~~~l~--------el~~~~~~D~e-------l~~~ 60 (235)
|-|.+++ +||+..++-.+.-.- +..++..++++++...+++.+. ++........+ -.+.
T Consensus 1 MlDik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~ 80 (418)
T TIGR00414 1 MLDRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKE 80 (418)
T ss_pred CCCHHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH------HHhcCCCCCCc
Q 026662 61 AYRASLDVSKLLDQYE------MSKLLRGPNDV 87 (235)
Q Consensus 61 a~ee~~~l~~~l~~le------~~~l~~~~~D~ 87 (235)
+.+++..+++.+++++ +..||.-+.+.
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~ 113 (418)
T TIGR00414 81 LKEELTELSAALKALEAELQDKLLSIPNIPHES 113 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
No 52
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=32.04 E-value=7e+02 Score=27.17 Aligned_cols=109 Identities=13% Similarity=0.025 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCCCc--CCceEEEecC----------CCchHHHHHHHHHHHH
Q 026662 54 DYGLFKRAYRASLDVSKLLDQYEMSKLL--------RGPNDV--EGASVTIKAG----------SNGICPEIWAEQLLNM 113 (235)
Q Consensus 54 D~el~~~a~ee~~~l~~~l~~le~~~l~--------~~~~D~--~~~~leI~aG----------~GG~Ea~~~a~~L~~m 113 (235)
|...++...+-+..+......+-..+.+ .+|.|. .++.|-++|. +||.=|--..+.||-+
T Consensus 1004 d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi 1083 (1163)
T COG1196 1004 DKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAI 1083 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHH
Confidence 4455555555555666555555444444 344443 3566666665 7999998888888876
Q ss_pred HHHHHHhcCCeEEEEecccCCC----------------CceeEEEEEEe------eccccccccccccceeEE-cC
Q 026662 114 YVRWADKEGYRGRVVDKCCCKN----------------GGVKSATIEFE------FEYAFGYLSGETGAHCLI-NF 166 (235)
Q Consensus 114 y~~~a~~~g~~~~~~~~~~~~~----------------~g~k~~~~~i~------g~~a~~~l~~e~Gvhrv~-~~ 166 (235)
+. .+-..+.++|...... ++-..+.|+.. .+..||-...+.||.+++ ++
T Consensus 1084 ~~----~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad~l~GVtm~~~GvS~vvsv~ 1155 (1163)
T COG1196 1084 QK----YRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADRLVGVTMQEKGVSKVVSVD 1155 (1163)
T ss_pred Hh----hCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHHHHeeeEeecCCceEEEEee
Confidence 54 3456677776433211 12333333332 235566666677888877 54
No 53
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=31.50 E-value=36 Score=28.50 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=16.0
Q ss_pred CCcccCCCCeeEEEeecCceEEEe
Q 026662 209 GERQSIAKPAACIQHIPTGIAVQS 232 (235)
Q Consensus 209 GQhVNkteSAVRi~H~PTGi~V~~ 232 (235)
|..|.. ...||+.|++||--..+
T Consensus 62 g~~v~~-g~~iRL~H~~Tg~yL~~ 84 (190)
T PF02815_consen 62 GGPVKW-GDVIRLRHLSTGKYLHS 84 (190)
T ss_dssp TSB-BT-TSEEEEEETTTS-EEEE
T ss_pred CCcccC-CCEEEEEEccCCCEEEE
Confidence 555554 88999999999954443
No 54
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=31.38 E-value=32 Score=22.76 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=13.1
Q ss_pred CCCeeEEEeecCceEEE
Q 026662 215 AKPAACIQHIPTGIAVQ 231 (235)
Q Consensus 215 teSAVRi~H~PTGi~V~ 231 (235)
-.+.|||.|.-||--..
T Consensus 6 ~g~~vrL~H~~tg~yL~ 22 (57)
T smart00472 6 WGDVVRLRHVTTGRYLH 22 (57)
T ss_pred cCCEEEEEEhhhCcEee
Confidence 35899999999985443
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.70 E-value=3e+02 Score=22.54 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHH
Q 026662 10 DPTKSNEVLVKLADSLKVVNALKDL 34 (235)
Q Consensus 10 D~~ka~~~~~el~~l~~~~~~~~~~ 34 (235)
+++....+..++..|...+..++.-
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~ 94 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKE 94 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888877776666655443
No 56
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=30.64 E-value=1.8e+02 Score=25.69 Aligned_cols=51 Identities=18% Similarity=0.049 Sum_probs=40.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEee
Q 026662 97 GSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147 (235)
Q Consensus 97 G~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g 147 (235)
|.-..+|..+...++.+|.++.+..|..+.++....+..+|..+-+..++.
T Consensus 148 ~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~ 198 (255)
T cd00779 148 DIDEESLEETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLS 198 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcccEEEEEEE
Confidence 444467777888999999999999999999999877888887665565554
No 57
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.51 E-value=1.8e+02 Score=24.59 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=16.2
Q ss_pred CCcCCCCHHHHHHHHHHHHh
Q 026662 4 NYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 4 dP~~WdD~~ka~~~~~el~~ 23 (235)
||=+|-||..++.+.+.+..
T Consensus 107 dPH~Wldp~~~~~~a~~I~~ 126 (203)
T cd01145 107 NPHVWLDPNNAPALAKALAD 126 (203)
T ss_pred CcCeecCHHHHHHHHHHHHH
Confidence 89999999999877766544
No 58
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=29.63 E-value=1.9e+02 Score=26.05 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=25.0
Q ss_pred CCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026662 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIA 45 (235)
Q Consensus 4 dP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~ 45 (235)
-|.-+-||+.|+.++..|..+-.+==....++...++.++++
T Consensus 191 T~GY~vDpkaAkaVL~vl~k~lgiEid~~~Le~RAke~E~ii 232 (258)
T COG2047 191 TPGYLVDPKAAKAVLEVLCKMLGIEIDMEALEERAKEMEEII 232 (258)
T ss_pred CCccccChHHHHHHHHHHHHHhCceecHHHHHHHHHHHHHHH
Confidence 366678999999888876654443333444444444444444
No 59
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=29.38 E-value=1.6e+02 Score=27.75 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhc--CCeEEEEecccCC-CCceeEEEEEEee------ccccccccccccceeEEcCCCCCC
Q 026662 101 ICPEIWAEQLLNMYVRWADKE--GYRGRVVDKCCCK-NGGVKSATIEFEF------EYAFGYLSGETGAHCLINFPNGSF 171 (235)
Q Consensus 101 ~Ea~~~a~~L~~my~~~a~~~--g~~~~~~~~~~~~-~~g~k~~~~~i~g------~~a~~~l~~e~Gvhrv~~~~~~~~ 171 (235)
.-|..++..+-++..+|.... .++|++-+...+. ..|-.. +.|.- ..+.+++.+|.|||-+. -=+
T Consensus 109 ~~a~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~~~--l~I~~~~~fs~~~l~~L~~HEigvH~lt----~~N 182 (349)
T PF08014_consen 109 LDAEEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSGDR--LKINKNAMFSERDLEALLHHEIGVHLLT----TLN 182 (349)
T ss_pred CCHHHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccCCe--eEEcCCCCcCHHHHHHHHHHhhhhhhcc----ccc
Confidence 345667788888888887766 4455544333222 223333 44443 24578899999999987 223
Q ss_pred CCcccc
Q 026662 172 PHEATL 177 (235)
Q Consensus 172 ~r~~ts 177 (235)
|+.|.+
T Consensus 183 g~~QPl 188 (349)
T PF08014_consen 183 GRAQPL 188 (349)
T ss_pred cccCCc
Confidence 555554
No 60
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=29.24 E-value=81 Score=23.80 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccc
Q 026662 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (235)
Q Consensus 106 ~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~ 156 (235)
|.-.++..-.+--+.+||.+.-++.+..-.+|.-++.+.+.|+-++..|.+
T Consensus 12 ~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~~~lL~~ 62 (86)
T COG3978 12 FNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDLLTS 62 (86)
T ss_pred CChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCCChHHHHH
Confidence 344566666777789999999999888777899999999999988877744
No 61
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=29.06 E-value=1.3e+02 Score=23.19 Aligned_cols=33 Identities=3% Similarity=-0.079 Sum_probs=27.7
Q ss_pred HHHhcCCeEEEEecccCCCCceeEEEEEEeecc
Q 026662 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEY 149 (235)
Q Consensus 117 ~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~ 149 (235)
...++||+++-+...+.+..|+...++.+.++.
T Consensus 28 lFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~ 60 (96)
T PRK08178 28 LFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQ 60 (96)
T ss_pred HHhcCCcCeeeEEEeecCCCCceEEEEEEcCch
Confidence 345699999999999988899999999887653
No 62
>PLN02678 seryl-tRNA synthetase
Probab=28.96 E-value=4.8e+02 Score=25.44 Aligned_cols=17 Identities=0% Similarity=-0.034 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026662 60 RAYRASLDVSKLLDQYE 76 (235)
Q Consensus 60 ~a~ee~~~l~~~l~~le 76 (235)
.+.+++..+++.+++++
T Consensus 82 ~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 82 ELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666665554
No 63
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=27.94 E-value=2.7e+02 Score=26.13 Aligned_cols=54 Identities=4% Similarity=0.004 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHHHHHH
Q 026662 21 LADSLKVVNALKDLRYKAEEAKLIAQLAEME-AIDYGLFKRAYRASLDVSKLLDQ 74 (235)
Q Consensus 21 l~~l~~~~~~~~~~~~~~~e~~~l~el~~~~-~~D~el~~~a~ee~~~l~~~l~~ 74 (235)
-++|+.++..|+++...+.++++-.+-+..+ .+.-+.+.+..+|++.+++++++
T Consensus 272 NnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 272 NNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999988887655322 12335666777777777766544
No 64
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.90 E-value=24 Score=26.06 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=8.2
Q ss_pred eEEEeecCceE
Q 026662 219 ACIQHIPTGIA 229 (235)
Q Consensus 219 VRi~H~PTGi~ 229 (235)
|-+=|+||||.
T Consensus 30 is~Eh~PSGID 40 (76)
T cd04911 30 ISYEHMPSGID 40 (76)
T ss_pred CCEeeecCCCc
Confidence 45679999963
No 65
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=27.88 E-value=2.5e+02 Score=23.35 Aligned_cols=16 Identities=13% Similarity=-0.081 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026662 61 AYRASLDVSKLLDQYE 76 (235)
Q Consensus 61 a~ee~~~l~~~l~~le 76 (235)
+.++...++.+|..|+
T Consensus 62 ak~~~~~~e~rI~~L~ 77 (160)
T PRK06342 62 RRRQMARPLRDLRYLA 77 (160)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777776665
No 66
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=27.72 E-value=87 Score=23.29 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=23.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHhHHHHHHHH
Q 026662 3 RNYNLWDDPTKSNEVLVKLADSLKVVNAL 31 (235)
Q Consensus 3 sdP~~WdD~~ka~~~~~el~~l~~~~~~~ 31 (235)
+-|...-||+.+.+++++|..+++.++-.
T Consensus 6 ~iP~viv~~~d~~~i~~rLD~iEeKVEft 34 (77)
T PRK01026 6 KIPQVVVDPKDFKEIQKRLDEIEEKVEFT 34 (77)
T ss_pred CCCeeecCHHHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999999999988877743
No 67
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.66 E-value=4.6e+02 Score=23.66 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=11.7
Q ss_pred CCCCHH---HHHHHHHHHHhHHHHHHHH
Q 026662 7 LWDDPT---KSNEVLVKLADSLKVVNAL 31 (235)
Q Consensus 7 ~WdD~~---ka~~~~~el~~l~~~~~~~ 31 (235)
.|.-|. +...+.+++..|..-++.|
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~l 199 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYL 199 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 465553 3344444455544444444
No 68
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=27.50 E-value=2.7e+02 Score=20.88 Aligned_cols=51 Identities=16% Similarity=0.029 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 026662 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS 78 (235)
Q Consensus 28 ~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~ 78 (235)
++.++++.....+....++-+.+...|++++..+.+-...-++...+|+..
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~ 53 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAE 53 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444333457888888887777777777777633
No 69
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=27.45 E-value=85 Score=26.17 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=24.0
Q ss_pred CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 205 PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 205 ~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
..|. +..+-..+|-+||.|..||--+.+++
T Consensus 126 ~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~ 156 (190)
T PF02815_consen 126 STGMGEDEIKTLDSYFRLRHVATGCWLHSHD 156 (190)
T ss_dssp SSSCSSSSBBBTTSEEEEEETTTTEEEEEEE
T ss_pred cCCccCCcEEecccEEEEEECCcCEEEecCC
Confidence 3454 66787889999999999998887654
No 70
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=27.42 E-value=1.8e+02 Score=25.94 Aligned_cols=51 Identities=16% Similarity=-0.015 Sum_probs=41.3
Q ss_pred ecCCCchHHHHHHHHHHHHHHHHHHhcC-CeEEEEecccCC--CCceeEEEEEE
Q 026662 95 KAGSNGICPEIWAEQLLNMYVRWADKEG-YRGRVVDKCCCK--NGGVKSATIEF 145 (235)
Q Consensus 95 ~aG~GG~Ea~~~a~~L~~my~~~a~~~g-~~~~~~~~~~~~--~~g~k~~~~~i 145 (235)
..+.-+.+|......++++|.+..+..| ..+.++....++ .++.++-.+++
T Consensus 152 ~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~ 205 (264)
T cd00772 152 SAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEA 205 (264)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEE
Confidence 3456788999999999999999999999 899999988887 45565555543
No 71
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=27.23 E-value=2e+02 Score=19.24 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026662 57 LFKRAYRASLDVSKLL 72 (235)
Q Consensus 57 l~~~a~ee~~~l~~~l 72 (235)
+.+.+.+.+...+..+
T Consensus 35 l~~~c~~~L~~~e~~i 50 (53)
T PF02609_consen 35 LIKKCQERLEEAEQKI 50 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 72
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=27.02 E-value=54 Score=25.52 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=13.3
Q ss_pred HHHHHhcCCeEEEEeccc
Q 026662 115 VRWADKEGYRGRVVDKCC 132 (235)
Q Consensus 115 ~~~a~~~g~~~~~~~~~~ 132 (235)
..||+++||.++|.+...
T Consensus 62 i~yaer~G~~Y~V~~p~~ 79 (101)
T PF04800_consen 62 IAYAERNGWDYEVEEPKK 79 (101)
T ss_dssp HHHHHHCT-EEEEE-STT
T ss_pred HHHHHHcCCeEEEeCCCC
Confidence 579999999999986543
No 73
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.99 E-value=1.1e+02 Score=28.26 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=20.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHH
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNAL 31 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~ 31 (235)
+++|+| +|+++.+.|+....|-..+...
T Consensus 179 ~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~ 206 (344)
T PF12777_consen 179 LKNPDF--NPEKVRKASKAAGSLCKWVRAM 206 (344)
T ss_dssp TTSTTS--SHHHHHHH-TTHHHHHHHHHHH
T ss_pred hcCCCC--CHHHHHHHhhcchHHHHHHHHH
Confidence 578887 8899999988877777766653
No 74
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=26.55 E-value=3.3e+02 Score=27.39 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHHHH
Q 026662 12 TKSNEVLVKLADSLKVV 28 (235)
Q Consensus 12 ~ka~~~~~el~~l~~~~ 28 (235)
++..+++.++..+...+
T Consensus 371 ~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHL 387 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544433
No 75
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.30 E-value=2e+02 Score=25.91 Aligned_cols=47 Identities=13% Similarity=0.014 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHH--HHhcCCCCCCcCCceEEEecCCCchHHHHH
Q 026662 60 RAYRASLDVSKLLDQYE--MSKLLRGPNDVEGASVTIKAGSNGICPEIW 106 (235)
Q Consensus 60 ~a~ee~~~l~~~l~~le--~~~l~~~~~D~~~~~leI~aG~GG~Ea~~~ 106 (235)
+.++.++.++.....|+ +..+|..-+|-..-|=|+-+|.---|-.+|
T Consensus 167 e~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i 215 (290)
T COG4026 167 EVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELI 215 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHH
Confidence 33344444444444443 223333334445566677777665444433
No 76
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=26.11 E-value=1.2e+02 Score=27.57 Aligned_cols=46 Identities=17% Similarity=0.066 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEE
Q 026662 100 GICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEF 145 (235)
Q Consensus 100 G~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i 145 (235)
+.++..+...++++|.++.+.-|+.+.++....++.+|..+-++.+
T Consensus 172 ~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~ 217 (297)
T cd00770 172 PEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDI 217 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCccccCchhhheee
Confidence 4688999999999999999999999999999888877665555544
No 77
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=25.99 E-value=2.2e+02 Score=27.81 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=27.6
Q ss_pred CcCCceEEEecCCCchHHHH-HHH---H-HHHHHHHHHHhcCCeEEEEecccC
Q 026662 86 DVEGASVTIKAGSNGICPEI-WAE---Q-LLNMYVRWADKEGYRGRVVDKCCC 133 (235)
Q Consensus 86 D~~~~~leI~aG~GG~Ea~~-~a~---~-L~~my~~~a~~~g~~~~~~~~~~~ 133 (235)
.-.+|+.=..||+||=+|-. ++. + +-....+|. +-.+..++....
T Consensus 393 ~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~---~~~V~pL~v~~~ 442 (454)
T TIGR01219 393 SLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWS---SHNVLALDVREA 442 (454)
T ss_pred hcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHHh---hCCEEEEecccc
Confidence 44678888899999888653 222 2 455666673 245556655543
No 78
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=24.96 E-value=84 Score=23.31 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhc
Q 026662 100 GICPEIWAEQLLNMYVRWADKE 121 (235)
Q Consensus 100 G~Ea~~~a~~L~~my~~~a~~~ 121 (235)
|-|+.+ ...|++||+.||...
T Consensus 29 ghE~~d-L~~ll~~Yq~W~h~L 49 (83)
T PF07962_consen 29 GHEYED-LRRLLQFYQLWAHRL 49 (83)
T ss_pred CCHHHH-HHHHHHHHHHHHHhc
Confidence 667775 678999999999863
No 79
>PHA03011 hypothetical protein; Provisional
Probab=24.94 E-value=3.5e+02 Score=21.34 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 026662 22 ADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLL 72 (235)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l 72 (235)
.+...+.++|+-+.+...+++.+++ +.|.+ .-.+..++..+++.+
T Consensus 71 ~qYN~L~dEYn~i~Ne~k~~~~iIQ-----dn~d~-I~~LraeIDkLK~ni 115 (120)
T PHA03011 71 AQYNELLDEYNLIENEIKDLEIIIQ-----DNDDE-IHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hchHH-HHHHHHHHHHHHHHH
Confidence 3444456667777777777777775 12333 333444555555544
No 80
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.82 E-value=3.9e+02 Score=23.46 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 026662 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM 77 (235)
Q Consensus 12 ~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~ 77 (235)
..+..+..+++.++...+.|.++..+.+..++++++- .-+...+.+++.++.++..|..
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie-------~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIE-------RELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777666666766542 1266788888888888877763
No 81
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=24.65 E-value=1.1e+02 Score=22.35 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCcCCCCHHHHHHHHHHHHhHHHHHHHH
Q 026662 4 NYNLWDDPTKSNEVLVKLADSLKVVNAL 31 (235)
Q Consensus 4 dP~~WdD~~ka~~~~~el~~l~~~~~~~ 31 (235)
-|...-||+.+++++++|..+++.++-.
T Consensus 4 iP~v~v~~~d~~~i~~rLd~iEeKVEf~ 31 (70)
T TIGR01149 4 APAVFVEPDEFNEVMKRLDEIEEKVEFV 31 (70)
T ss_pred CCeeecCHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999888877643
No 82
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=24.49 E-value=3.7e+02 Score=21.53 Aligned_cols=50 Identities=18% Similarity=0.058 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 026662 29 NALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS 78 (235)
Q Consensus 29 ~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~ 78 (235)
+.+++|.....|...-++-+.++..|++++..+..-...-.+.+.+|.-.
T Consensus 3 ~~Ln~Lie~~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~ 52 (139)
T TIGR02284 3 HSLNDLIEISIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQV 52 (139)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444468898888887777777777777633
No 83
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=23.95 E-value=5.1e+02 Score=22.88 Aligned_cols=64 Identities=8% Similarity=0.125 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 026662 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLL 72 (235)
Q Consensus 7 ~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l 72 (235)
++|....++.+......++.+.+....+.+.++-++.++.-+. .-+..+...+...+.++...+
T Consensus 28 V~D~an~~q~i~~aa~~~~q~~~Qi~qlqnQiq~y~nql~n~~--~L~~~~~~~~~~~l~~l~~L~ 91 (246)
T TIGR02780 28 CINCANFSQQILTAAESVEQLNNQIQQLQNQIQRYENQLKNTM--SLPANIWNRLESSLQKLTNII 91 (246)
T ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHH
Confidence 4567788888988888888888888888888888877664332 123346666666666555443
No 84
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=23.62 E-value=1.3e+02 Score=22.08 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.6
Q ss_pred CCcCCCCHHHHHHHHHHHHhHHHHHH
Q 026662 4 NYNLWDDPTKSNEVLVKLADSLKVVN 29 (235)
Q Consensus 4 dP~~WdD~~ka~~~~~el~~l~~~~~ 29 (235)
-|...-||+.+.++.++|.++++.++
T Consensus 7 ~P~v~v~~~dfne~~kRLdeieekve 32 (75)
T COG4064 7 VPKVVVDPDDFNEIHKRLDEIEEKVE 32 (75)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999888776
No 85
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=23.49 E-value=4.4e+02 Score=22.03 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=27.2
Q ss_pred eEEEecCCCch--HHHHHHHHHHHHHHHHHHhcCCeEEEE
Q 026662 91 SVTIKAGSNGI--CPEIWAEQLLNMYVRWADKEGYRGRVV 128 (235)
Q Consensus 91 ~leI~aG~GG~--Ea~~~a~~L~~my~~~a~~~g~~~~~~ 128 (235)
-+.-+.|..|. +|-.|..++.+||......+..-+..+
T Consensus 114 ~~~~r~~~~PSlAdmLewl~di~r~y~~~yl~k~~lL~~l 153 (168)
T PF15011_consen 114 ALQQRSGVCPSLADMLEWLQDIERMYRSEYLLKKSLLSSL 153 (168)
T ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666764 588999999999999776654444444
No 86
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=23.46 E-value=2.4e+02 Score=21.02 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHH
Q 026662 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115 (235)
Q Consensus 64 e~~~l~~~l~~le~~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~ 115 (235)
+...+.+.+.+++.. -...++|-+-+-.+|..+..||.++++.+.
T Consensus 6 ~~~~l~~~l~~~~~~-------t~~~i~Vvtv~~~~~~~~~~~A~~~~~~~~ 50 (119)
T PF04536_consen 6 ERERLNQALAKLEKK-------TGVQIVVVTVPSLPGQDIEDYAQQLFERWG 50 (119)
T ss_dssp HHHHHHHHHHHHHHH-------C--EEEEEEESB-TTS-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHh-------hCCEEEEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 455566666665532 223566666777888899999999988754
No 87
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=23.30 E-value=5.9e+02 Score=24.21 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026662 13 KSNEVLVKLADSLKVVNALKDLRYKAEEAKLIA 45 (235)
Q Consensus 13 ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~ 45 (235)
+..+-..++..+...++.|.++...+.++.+|+
T Consensus 37 ~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~ 69 (360)
T TIGR00019 37 KLSKEYSQLEEIVDCYREYQQAQEDIKEAKEIL 69 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667777777777777777777777765
No 88
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.05 E-value=5.2e+02 Score=25.56 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 026662 31 LKDLRYKAEEAKLIAQ 46 (235)
Q Consensus 31 ~~~~~~~~~e~~~l~e 46 (235)
++++.+.+++.+++..
T Consensus 391 ~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 391 LKKCQKELKEEREENK 406 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 89
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=23.03 E-value=8.7e+02 Score=25.28 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026662 13 KSNEVLVKLADSLKVVNALKDLRYKAEEAKLIA 45 (235)
Q Consensus 13 ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~ 45 (235)
|..++.++++.+-..+..=..|++.+.|.+.+.
T Consensus 406 r~~~~~~~~~~~~~~~~~n~~w~~rl~e~R~~v 438 (764)
T TIGR02865 406 KRKELINTTEDILNNYIINEMWRKRLEEGRRLV 438 (764)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555554444444466777777776665
No 90
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.53 E-value=3.3e+02 Score=20.26 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 026662 30 ALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLL 72 (235)
Q Consensus 30 ~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l 72 (235)
.+..++..++|++..+.+++ .+|+-+..-..|+..=++-+
T Consensus 47 ~l~~ie~~L~DL~~aV~ive---~np~kF~l~~~Ei~~Rr~fv 86 (97)
T PF09177_consen 47 ALQSIEWDLEDLEEAVRIVE---KNPSKFNLSEEEISRRRQFV 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CCHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---hCccccCCCHHHHHHHHHHH
Confidence 34444444455554444443 23444444444444433333
No 91
>PF04983 RNA_pol_Rpb1_3: RNA polymerase Rpb1, domain 3; InterPro: IPR007066 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1ZYR_D 1SMY_D 2A68_N 2O5J_D 3AOH_N 2O5I_D 2CW0_N 2A6H_N 2A69_D 3EQL_D ....
Probab=22.20 E-value=77 Score=25.50 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=24.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCeEE
Q 026662 99 NGICPEIWAEQLLNMYVRWADKEGYRGR 126 (235)
Q Consensus 99 GG~Ea~~~a~~L~~my~~~a~~~g~~~~ 126 (235)
|+.+|..|...+.++-.+|+.+.|+.+-
T Consensus 127 G~~~~~~~ld~i~~lg~~~~t~~GfSvg 154 (158)
T PF04983_consen 127 GPEATVQFLDAIKRLGFRYLTRSGFSVG 154 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTBB-S
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCeeEe
Confidence 5789999999999999999999998864
No 92
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=22.13 E-value=2.6e+02 Score=23.67 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH-HHHHHhcCCC
Q 026662 40 EAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLD-QYEMSKLLRG 83 (235)
Q Consensus 40 e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~-~le~~~l~~~ 83 (235)
..+.|.++......+++.++.|.+.+..+.+..+ +..++.|+..
T Consensus 102 ~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~kE~~iE~llka 146 (196)
T PF12685_consen 102 QIETLKEIINNENASEEEKKEAQDKLLELTEKMEKEMEIENLLKA 146 (196)
T ss_dssp HHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555554444578999999999999887653 3345555533
No 93
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.08 E-value=4e+02 Score=26.46 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 026662 57 LFKRAYRASLDVSK 70 (235)
Q Consensus 57 l~~~a~ee~~~l~~ 70 (235)
+.+++.+++++++.
T Consensus 248 ~lq~v~~~ce~lr~ 261 (594)
T KOG1086|consen 248 LLQEVYNRCEQLRP 261 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666554
No 94
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.88 E-value=3.1e+02 Score=24.10 Aligned_cols=20 Identities=10% Similarity=0.411 Sum_probs=16.8
Q ss_pred CCcCCCCHHHHHHHHHHHHh
Q 026662 4 NYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 4 dP~~WdD~~ka~~~~~el~~ 23 (235)
||=+|=||..+..+.+.++.
T Consensus 111 dPH~Wldp~~~~~~a~~I~~ 130 (266)
T cd01018 111 DPHIWLSPANAKIMAENIYE 130 (266)
T ss_pred CCccCcCHHHHHHHHHHHHH
Confidence 89999999999888776554
No 95
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=21.74 E-value=4.8e+02 Score=24.48 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHH----HHHHHHHHHHHHHHHH
Q 026662 31 LKDLRYKAEEAKLIAQLAEMEAIDYGLFKR----AYRASLDVSKLLDQYE 76 (235)
Q Consensus 31 ~~~~~~~~~e~~~l~el~~~~~~D~el~~~----a~ee~~~l~~~l~~le 76 (235)
..+++..++-...+.+++-+...|+...++ +......+.+++++|+
T Consensus 266 V~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELe 315 (336)
T PF05055_consen 266 VDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELE 315 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445555666666666444444444444 3344445667777776
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.42 E-value=6.4e+02 Score=23.11 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 026662 32 KDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLD 73 (235)
Q Consensus 32 ~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~ 73 (235)
..+...+..++....-+ +..|++-++.+..++..+...+.
T Consensus 187 ~~L~~e~~~Lk~~~~e~--~~~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 187 AELEEELENLKQLVEEI--ESCDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHhhh--hhcCHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444322 34578878877777777766554
No 97
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=21.35 E-value=3e+02 Score=25.69 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=30.0
Q ss_pred hcCCCCCCcCCceEEEecCCCchHHH-HHHHHHHHHHHHHHHhcCCeEEEEecc
Q 026662 79 KLLRGPNDVEGASVTIKAGSNGICPE-IWAEQLLNMYVRWADKEGYRGRVVDKC 131 (235)
Q Consensus 79 ~l~~~~~D~~~~~leI~aG~GG~Ea~-~~a~~L~~my~~~a~~~g~~~~~~~~~ 131 (235)
.++.+-.|...++.-+.||+||-.|. ......-+....|..+ .+.+++..
T Consensus 275 ~~Ld~i~~l~gvl~~lipgaGggdaif~l~~~~~e~re~w~~~---gi~i~dv~ 325 (337)
T COG3890 275 AALDSIFDLLGVLCDLIPGAGGGDAIFLLYRPNIEAREAWLSK---GISIVDVN 325 (337)
T ss_pred hhhhhHHhccCceEeecccCCCCceEEEEecccHHHHHHHHhC---CeEEEEcc
Confidence 34445567788999999999976554 3344445555555432 34444444
No 98
>PRK01919 tatB sec-independent translocase; Provisional
Probab=21.13 E-value=5.2e+02 Score=22.01 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 026662 14 SNEVLVKLADSLKVVNAL 31 (235)
Q Consensus 14 a~~~~~el~~l~~~~~~~ 31 (235)
++.+.+-+..++..++.+
T Consensus 29 aRtlGk~i~k~Rr~~~d~ 46 (169)
T PRK01919 29 ARTAGALFGRAQRYINDV 46 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444333
No 99
>PF08350 DUF1724: Domain of unknown function (DUF1724); InterPro: IPR013561 This domain of unknown function has so far only been found at the C terminus of archaean proteins, including several transcriptional regulators of the ArsR family (see IPR001845 from INTERPRO).
Probab=21.09 E-value=87 Score=22.08 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=23.4
Q ss_pred CCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHH
Q 026662 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119 (235)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~ 119 (235)
.+.+|. ..+|-. ..+|-.|..+||+-|.+-|+
T Consensus 31 ~G~yD~-~~lis~-----~~~Al~WG~eLF~yY~~~s~ 62 (64)
T PF08350_consen 31 DGRYDH-QDLISF-----DPSALKWGEELFEYYKKRSE 62 (64)
T ss_pred CCcCcC-eeEEEC-----CHHHHHHHHHHHHHHHHhCc
Confidence 456777 333322 56889999999999998765
No 100
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.92 E-value=4.8e+02 Score=27.16 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 026662 26 KVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLL 72 (235)
Q Consensus 26 ~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l 72 (235)
.+.++++++++.+++++.++. ++..+.+.+.+|+.++++..
T Consensus 431 kl~~e~~~l~~~i~~l~~iL~------~~~~~~~~i~~el~~ik~kf 471 (738)
T TIGR01061 431 ELKEEQNELEKKIISLEQIIA------SEKARNKLLKKQLEEYKKQF 471 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666663 46778888988888887654
No 101
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.89 E-value=4.4e+02 Score=26.12 Aligned_cols=53 Identities=8% Similarity=0.060 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccHHHHHHHHHHHHHHHHHHHH
Q 026662 22 ADSLKVVNALKDLRYKAEEAKLIAQ-LAEMEAIDYGLFKRAYRASLDVSKLLDQ 74 (235)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~e~~~l~e-l~~~~~~D~el~~~a~ee~~~l~~~l~~ 74 (235)
+.|...-..-.+++++++.++.-.+ |.....+...-++..+.|+..|+++++.
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444555554442222 2121122344566666677777766644
No 102
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=20.39 E-value=2.5e+02 Score=24.27 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=17.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026662 3 RNYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 3 sdP~~WdD~~ka~~~~~el~~ 23 (235)
.||-+|=||..++.+.+.+++
T Consensus 90 ~npH~Wldp~~~~~~~~~Ia~ 110 (256)
T PF01297_consen 90 HNPHVWLDPENAKKMAEAIAD 110 (256)
T ss_dssp BESTGGGSHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHH
Confidence 378999999999888777655
No 103
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.25 E-value=3.5e+02 Score=20.56 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHHHHHHHHHH
Q 026662 28 VNALKDLRYKAEEAKLIAQLAEMEAI-DYGLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 28 ~~~~~~~~~~~~e~~~l~el~~~~~~-D~el~~~a~ee~~~l~~~l~~le 76 (235)
+..++++-=.+++++.+++....... -++..+++.+.+..+++++++++
T Consensus 50 I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~ 99 (113)
T cd01109 50 IKCLRNTGMSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQ 99 (113)
T ss_pred HHHHHHcCCCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666777777765422111 14567777777777777777665
No 104
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.17 E-value=6.1e+02 Score=26.50 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=10.8
Q ss_pred CchHHHHHHHHHHH
Q 026662 99 NGICPEIWAEQLLN 112 (235)
Q Consensus 99 GG~Ea~~~a~~L~~ 112 (235)
-|+|||.||+.-++
T Consensus 306 ~~ieact~aA~al~ 319 (867)
T KOG2148|consen 306 QGIEACTWAAKALR 319 (867)
T ss_pred hhHHHHHHHHHHHH
Confidence 48899999887554
No 105
>PRK06746 peptide chain release factor 2; Provisional
Probab=20.16 E-value=4.9e+02 Score=24.40 Aligned_cols=35 Identities=11% Similarity=-0.033 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026662 13 KSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL 47 (235)
Q Consensus 13 ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el 47 (235)
+..+=..+|..+...++.|+.....+.++.+|++.
T Consensus 15 ~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~ 49 (326)
T PRK06746 15 AVINEANALKDMVGKFRQLDETFENLEITHELLKE 49 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445667777788888888888888887777643
No 106
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=20.14 E-value=5e+02 Score=21.54 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=51.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH-----HHhcC-------CCCCCcC
Q 026662 21 LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE-----MSKLL-------RGPNDVE 88 (235)
Q Consensus 21 l~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le-----~~~l~-------~~~~D~~ 88 (235)
+..| ..+..|+++-=.+++++.+++. .+.+....+.+.+..+++++.+++ +..++ +.+.-..
T Consensus 45 l~rL-~~I~~lr~~G~sL~eI~~ll~~-----~~~~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~~~~~~~~~V~~ 118 (172)
T cd04790 45 LERL-EQICAYRSAGVSLEDIRSLLQQ-----PGDDATDVLRRRLAELNREIQRLRQQQRAIATLLKQPTLLKEQRLVTK 118 (172)
T ss_pred HHHH-HHHHHHHHcCCCHHHHHHHHhc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCH
Confidence 4444 3334455555556666666642 233555556666666666655553 11111 1111112
Q ss_pred CceEEEecCCC-chHH-HHHHHHHHHH----HHHHHHhcCCeE
Q 026662 89 GASVTIKAGSN-GICP-EIWAEQLLNM----YVRWADKEGYRG 125 (235)
Q Consensus 89 ~~~leI~aG~G-G~Ea-~~~a~~L~~m----y~~~a~~~g~~~ 125 (235)
.-|+++-..+| ...+ ..|-..+-+| +..|.+..|+.-
T Consensus 119 ~~w~~l~~~~g~~~~~m~~wh~~fe~~~p~~h~~~l~~~g~~~ 161 (172)
T cd04790 119 EKWVAILKAAGMDEADMRRWHIEFEKMEPEAHQEFLQSLGIPE 161 (172)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhCcHHHHHHHHHcCCCH
Confidence 34555555555 3333 5666666554 788888888753
Done!