Query 026662
Match_columns 235
No_of_seqs 154 out of 1407
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gqe_A Release factor 2, RF2; 100.0 8.6E-80 2.9E-84 566.7 25.9 231 2-234 41-276 (365)
2 1zbt_A RF-1, peptide chain rel 100.0 3.3E-78 1.1E-82 556.3 21.7 232 1-234 32-272 (371)
3 3d5a_X RF1, peptide chain rele 100.0 1.8E-77 6.1E-82 549.0 24.9 228 1-234 18-254 (354)
4 2b3t_B RF-1, peptide chain rel 100.0 3.1E-77 1.1E-81 548.5 14.7 227 2-234 23-259 (360)
5 2ihr_1 Peptide chain release f 100.0 5.2E-77 1.8E-81 547.8 15.8 227 1-234 32-264 (365)
6 1rq0_A RF-1, peptide chain rel 100.0 2.6E-71 9E-76 505.8 18.3 217 2-234 12-235 (342)
7 2rsm_A Probable peptide chain 99.9 6.8E-28 2.3E-32 188.4 5.1 71 160-234 10-85 (115)
8 1j26_A Immature colon carcinom 99.6 3.7E-16 1.3E-20 122.3 5.8 39 189-227 11-53 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.6 7.9E-16 2.7E-20 119.8 4.4 43 192-234 7-76 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.5 1.4E-14 4.7E-19 117.5 3.2 43 192-234 7-76 (140)
11 2lw1_A ABC transporter ATP-bin 90.0 0.53 1.8E-05 34.4 5.2 33 2-34 45-79 (89)
12 4fla_A Regulation of nuclear P 75.3 30 0.001 27.6 10.5 73 3-75 56-133 (152)
13 3lss_A Seryl-tRNA synthetase; 58.4 98 0.0034 29.1 11.5 42 1-42 6-57 (484)
14 2a26_A Calcyclin-binding prote 56.2 39 0.0013 22.0 6.8 41 32-76 7-47 (50)
15 3err_A Fusion protein of micro 50.1 85 0.0029 29.8 9.7 62 2-75 145-206 (536)
16 3pe9_A Fibronectin(III)-like m 47.9 25 0.00087 25.8 4.6 49 136-185 30-89 (98)
17 3qne_A Seryl-tRNA synthetase, 42.3 2.2E+02 0.0076 26.7 12.2 41 2-42 1-53 (485)
18 3oja_B Anopheles plasmodium-re 41.0 1.3E+02 0.0044 27.8 9.4 21 56-76 558-578 (597)
19 1ses_A Seryl-tRNA synthetase; 39.8 2E+02 0.0068 26.2 10.3 34 9-42 9-48 (421)
20 3d5a_X RF1, peptide chain rele 39.8 70 0.0024 29.0 7.0 65 12-76 32-96 (354)
21 2dq0_A Seryl-tRNA synthetase; 37.4 1.7E+02 0.0059 27.0 9.5 89 2-90 1-116 (455)
22 1ysm_A Calcyclin-binding prote 37.0 89 0.003 22.1 5.8 41 31-75 5-45 (77)
23 3s6n_M SurviVal motor neuron p 36.8 34 0.0011 20.9 3.0 23 3-25 4-26 (37)
24 2rbd_A BH2358 protein; putativ 35.9 1.5E+02 0.0053 23.0 8.2 47 26-76 21-67 (171)
25 1mqv_A Cytochrome C'; four-hel 35.9 32 0.0011 26.0 3.6 21 3-23 67-87 (125)
26 3de8_A Soluble cytochrome B562 35.9 28 0.00097 25.4 3.2 23 4-26 55-77 (106)
27 3vrc_A Cytochrome C'; C-type c 33.1 38 0.0013 26.0 3.6 20 4-23 74-93 (131)
28 1oxz_A ADP-ribosylation factor 32.0 2.1E+02 0.0071 23.4 9.2 57 54-121 105-161 (186)
29 2lf0_A Uncharacterized protein 31.8 1.2E+02 0.0041 23.3 6.1 24 53-76 33-56 (123)
30 4etr_A Putative uncharacterize 30.7 1.8E+02 0.0062 22.3 10.1 96 24-119 9-120 (153)
31 3qne_A Seryl-tRNA synthetase, 30.2 77 0.0026 29.9 5.9 44 100-143 309-352 (485)
32 2j8w_A Cytochrome C'; heme, ir 28.9 96 0.0033 23.3 5.3 21 3-23 71-91 (129)
33 1q08_A Zn(II)-responsive regul 28.7 1.2E+02 0.0041 21.1 5.6 46 31-76 12-59 (99)
34 2ykz_A Cytochrome C'; electron 28.2 1E+02 0.0035 23.1 5.3 21 3-23 68-88 (127)
35 1gqa_A Cytochrome C'; electron 27.1 32 0.0011 26.1 2.3 21 3-23 72-92 (130)
36 1cpq_A Cytochrome C'; electron 25.7 35 0.0012 25.9 2.2 21 3-23 70-90 (129)
37 1naf_A ADP-ribosylation factor 24.9 2.6E+02 0.0089 22.2 8.3 55 54-119 89-143 (158)
38 4ew8_A Sensor protein DIVL; si 24.9 2.6E+02 0.0088 22.1 11.2 114 6-128 11-141 (268)
39 1s05_A Cytochrome C-556, C556; 24.7 39 0.0013 25.7 2.3 21 3-23 71-91 (129)
40 3tuf_A Stage III sporulation p 24.7 2.1E+02 0.0071 23.7 6.9 31 42-72 101-131 (197)
41 2qyw_A Vesicle transport throu 24.5 2E+02 0.007 20.8 9.7 48 29-76 49-98 (102)
42 3err_A Fusion protein of micro 23.6 1.2E+02 0.0042 28.7 6.0 42 102-143 399-440 (536)
43 2lju_A Putative oxidoreductase 21.6 51 0.0017 24.9 2.4 17 115-131 73-89 (108)
44 1zbt_A RF-1, peptide chain rel 21.6 1.4E+02 0.0046 27.3 5.6 55 18-72 52-110 (371)
45 1wle_A Seryl-tRNA synthetase; 21.5 1.3E+02 0.0045 28.2 5.7 38 101-138 345-382 (501)
46 3lss_A Seryl-tRNA synthetase; 21.5 1.3E+02 0.0046 28.2 5.7 37 103-139 335-371 (484)
47 2zqm_A Prefoldin beta subunit 21.0 2.3E+02 0.008 20.2 9.6 18 56-73 70-87 (117)
48 2jvf_A De novo protein M7; tet 20.8 1.7E+02 0.0059 20.6 4.8 36 86-126 46-81 (96)
49 3okq_A BUD site selection prot 20.8 3.1E+02 0.011 21.5 9.9 28 9-36 51-78 (141)
50 3mal_A Stromal cell-derived fa 20.7 58 0.002 26.8 2.7 22 212-233 137-158 (199)
51 3ghg_A Fibrinogen alpha chain; 20.6 2.3E+02 0.0078 27.1 7.0 24 16-39 61-84 (562)
52 2ccy_A Cytochrome C; electron 20.3 56 0.0019 24.7 2.4 20 4-23 71-91 (128)
53 2lw1_A ABC transporter ATP-bin 20.2 2.3E+02 0.0079 19.8 9.0 56 17-75 20-75 (89)
No 1
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=8.6e-80 Score=566.71 Aligned_cols=231 Identities=28% Similarity=0.440 Sum_probs=224.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~~l~ 81 (235)
|++|+||+||+++++++++++.|+.+++.|+++++.+++++++.+|++++ .|++|+++|.+++..+++.+++++..+||
T Consensus 41 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e-~D~e~~~~a~~e~~~l~~~l~~le~~~ll 119 (365)
T 1gqe_A 41 LEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEA-DDEETFNEAVAELDALEEKLAQLEFRRMF 119 (365)
T ss_dssp HHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 68999999999999999999999999999999999999999999999763 69999999999999999999999999999
Q ss_pred CCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccccccce
Q 026662 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (235)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~Gvh 161 (235)
+||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++||+|+|||
T Consensus 120 ~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvH 199 (365)
T 1gqe_A 120 SGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVH 199 (365)
T ss_dssp CSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEE
T ss_pred CCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 162 rv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
||| +|||+++|||||| |+|+|+|+++ +++++.|+++||+|+| |||| |||||||+|||||||+||||+|+||+
T Consensus 200 RvqRvs~~es~gRrhTS~asV~V~Pe~~-~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~ 276 (365)
T 1gqe_A 200 RLVRKSPFDSGGRRHTSFSSAFVYPEVD-DDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQN 276 (365)
T ss_dssp EEEEECTTSSSCCEEEEEEEEEEEECCB-TTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECS
T ss_pred EEEEeCCCCCcCCCCcceeEEEEecCCC-cccccccCHHHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECC
Confidence 999 9999999999999 9999999984 4578999999999999 8999 99999999999999999999999996
No 2
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=3.3e-78 Score=556.30 Aligned_cols=232 Identities=22% Similarity=0.255 Sum_probs=192.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH---
Q 026662 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM--- 77 (235)
Q Consensus 1 ~msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~--- 77 (235)
+|++|+||+||+++++++++++.|+.+++.|+++++.+++++++.+|+++.+.|+||+++|.+|+..+++.+++++.
T Consensus 32 ~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l~ 111 (371)
T 1zbt_A 32 LLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLR 111 (371)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999864235899999999999999999988873
Q ss_pred -HhcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccc
Q 026662 78 -SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (235)
Q Consensus 78 -~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~ 156 (235)
.+||++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++||+
T Consensus 112 ~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv~~~I~G~~ayg~Lk~ 191 (371)
T 1zbt_A 112 FLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKY 191 (371)
T ss_dssp TTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEEEEEEESTTHHHHHGG
T ss_pred HhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEECccHHHHHhh
Confidence 4466999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEE
Q 026662 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (235)
Q Consensus 157 e~Gvhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~ 231 (235)
|+|||||| +|||+++||+||| |+|+|+|+++ ++++.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 192 EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~--ev~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~ 269 (371)
T 1zbt_A 192 ESGAHRVQRVPVTESQGRVHTSTATVLVMPEVE--EVEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVE 269 (371)
T ss_dssp GCEEEEEEECCTTCSSCCCEEEEEEEEEEECCC--GGGSCCCGGGEEEEEECC---------CCCCEEEEEETTTTEEEE
T ss_pred ccCeEEEEeecCCCCCCcccccceEEEEecccc--ccccccCcCcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEE
Confidence 99999999 9999999999999 9999999984 378899999999999 8999 99999999999999999999999
Q ss_pred eec
Q 026662 232 SLG 234 (235)
Q Consensus 232 ~q~ 234 (235)
||+
T Consensus 270 ~q~ 272 (371)
T 1zbt_A 270 MQE 272 (371)
T ss_dssp ECS
T ss_pred ECC
Confidence 996
No 3
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=1.8e-77 Score=549.04 Aligned_cols=228 Identities=23% Similarity=0.319 Sum_probs=219.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH----
Q 026662 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE---- 76 (235)
Q Consensus 1 ~msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le---- 76 (235)
+|++|+||+||+++++++++++.|+.+++.|+++++.+++++++.+|++ |++|+++|.+|+..+++.+++++
T Consensus 18 ~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~e~~~l~~~~~~le~~l~ 93 (354)
T 3d5a_X 18 LLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD----DPELKEMAKAEREALLARKEALEKELE 93 (354)
T ss_dssp HTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999874 89999999999999999998876
Q ss_pred HHhcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeeccccccccc
Q 026662 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (235)
Q Consensus 77 ~~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~ 156 (235)
..+||++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++||+
T Consensus 94 ~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v~~~i~G~~ayg~Lk~ 173 (354)
T 3d5a_X 94 RHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKY 173 (354)
T ss_dssp HHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEEEEEEESTTHHHHHGG
T ss_pred HhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEEEEEEECccHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEE
Q 026662 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (235)
Q Consensus 157 e~Gvhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~ 231 (235)
|+|||||| +|||+++||+||| |+|+|+|+++ ++++.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 174 E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~--~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~ 251 (354)
T 3d5a_X 174 ESGVHRVQRVPVTETQGRIHTSTATVAVLPKAE--EEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVT 251 (354)
T ss_dssp GCSEEEEEECCSSCSSCCCEEEEEEEEEEECCC--CCCCCCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEE
T ss_pred ccCeeEEEecCCcCCCCcCccCceEEEEeccCc--ccccccCccceEEEeecCCCCCCcccccccceEEEEEcCCeEEEE
Confidence 99999999 9999999999999 9999999984 378999999999999 8999 99999999999999999999999
Q ss_pred eec
Q 026662 232 SLG 234 (235)
Q Consensus 232 ~q~ 234 (235)
||+
T Consensus 252 ~q~ 254 (354)
T 3d5a_X 252 CQD 254 (354)
T ss_dssp ECC
T ss_pred ECC
Confidence 996
No 4
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=3.1e-77 Score=548.46 Aligned_cols=227 Identities=21% Similarity=0.282 Sum_probs=186.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH---
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS--- 78 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~--- 78 (235)
|++|+||+||+++++++++++.|+.+++.|+++++.+++++++.+|+ + |++|+++|.+|+..+++.+++++..
T Consensus 23 ~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~-e---D~e~~~~a~~e~~~l~~~~~~le~~l~~ 98 (360)
T 2b3t_B 23 LGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML-D---DPEMREMAQDELREAKEKSEQLEQQLQV 98 (360)
T ss_dssp HHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------------------CCCC
T ss_pred hcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999998 2 8999999999999999999999864
Q ss_pred -hcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeecccccccccc
Q 026662 79 -KLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157 (235)
Q Consensus 79 -~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e 157 (235)
+||+||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++||+|
T Consensus 99 ~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~~~~~i~G~~ayg~Lk~E 178 (360)
T 2b3t_B 99 LLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFE 178 (360)
T ss_dssp CCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEECSSSCHHHHGGG
T ss_pred hhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEEcccHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCC-CcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEE
Q 026662 158 TGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPD-LQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQ 231 (235)
Q Consensus 158 ~Gvhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~-~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~ 231 (235)
+|||||| +|||+++||+||| |+|+|+|+++ +++ +.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 179 ~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~--~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~ 256 (360)
T 2b3t_B 179 SGGHRVQRVPATESQGRIHTSACTVAVMPELP--DAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVE 256 (360)
T ss_dssp CEEEEEEECCTTCSSCCCEEEEEEEECCBCCC--TTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEE
T ss_pred cCeEEEEecCCCcccCcCCccceEEEEecCcc--cccccccChhheEEeeecCCCCCCCccccccceEEEEECCCeEEEE
Confidence 9999999 9999999999999 9999999984 366 889999999999 8999 99999999999999999999999
Q ss_pred eec
Q 026662 232 SLG 234 (235)
Q Consensus 232 ~q~ 234 (235)
||+
T Consensus 257 ~q~ 259 (360)
T 2b3t_B 257 CQD 259 (360)
T ss_dssp EEE
T ss_pred ECC
Confidence 996
No 5
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=5.2e-77 Score=547.80 Aligned_cols=227 Identities=28% Similarity=0.407 Sum_probs=218.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026662 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQ-LAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSK 79 (235)
Q Consensus 1 ~msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~e-l~~~~~~D~el~~~a~ee~~~l~~~l~~le~~~ 79 (235)
+|++|+||+||+++++++++++.|+.+++.|+++++.+++++++.+ |++++ | ++|.+++..+++.++++++.+
T Consensus 32 ~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~ee--d----~~a~~e~~~l~~~~~~le~~~ 105 (365)
T 2ihr_1 32 RLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEE--R----EALKPELEEAAKKLDELYHQT 105 (365)
T ss_dssp STTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCTT--G----GGTGGGTHHHHHHHHHHHHHH
T ss_pred HhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--H----HHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999 87642 3 789999999999999999999
Q ss_pred cCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeecccccccccccc
Q 026662 80 LLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETG 159 (235)
Q Consensus 80 l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~G 159 (235)
||+||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++||+|+|
T Consensus 106 ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~G 185 (365)
T 2ihr_1 106 LLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAG 185 (365)
T ss_dssp HTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCE
T ss_pred hcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeEEEEEEEEccCHHHhhhhCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 160 AHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 160 vhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
||||| +|||+++|||||| |+|+|+|+++ +.+++.|+++||+|+| |||| |||||||+|||||||+||||+|+||+
T Consensus 186 vHRvqRvs~~es~gRrhTS~asV~V~P~~~-~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~ 264 (365)
T 2ihr_1 186 VHRLVRPSPFDASGRRHTSFAGVEVIPEVD-EEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQT 264 (365)
T ss_dssp EEEEEEECTTSSSCCEEEEEEEEEEEEECC-SSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECS
T ss_pred EEEEEEeCCCCccCCccceeEEEEEecCCC-cccccccCccceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECC
Confidence 99999 9999999999999 9999999984 3578899999999999 8999 99999999999999999999999996
No 6
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=2.6e-71 Score=505.84 Aligned_cols=217 Identities=25% Similarity=0.320 Sum_probs=195.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH--HHh
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE--MSK 79 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le--~~~ 79 (235)
|++|+| ||++|++++++++.|+.+++.|++++ .+++++.|+ +++ .|+ .+|+..+++.+++++ +..
T Consensus 12 ~~~p~~--d~~~~~~~~ke~~~l~~~v~~~~~~~-~~~~~~~l~---~e~-~D~------~~e~~~l~~~l~~le~~l~~ 78 (342)
T 1rq0_A 12 LARPDL--TPEQMKNYGMEYAKIEEIENITNRIK-ETQEFIELL---REE-GEN------ELEIEKYEKELDQLYQELLF 78 (342)
T ss_dssp HHSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTT---TTT-TTC------CSCHHHHHHHHHHHHHHHHH
T ss_pred hhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHH---Hhc-CCH------HHHHHHHHHHHHHHHHHHHH
Confidence 689999 99999999999999999999999999 666666664 322 344 566777777777776 445
Q ss_pred cCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEEEEeecccccccccccc
Q 026662 80 LLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETG 159 (235)
Q Consensus 80 l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~~i~g~~a~~~l~~e~G 159 (235)
++. |+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++||+|+|
T Consensus 79 lL~-p~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~G 157 (342)
T 1rq0_A 79 LLS-PEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESG 157 (342)
T ss_dssp HHS-CSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCE
T ss_pred hcC-ccccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcCHHHHHhhccC
Confidence 555 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 160 AHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 160 vhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
||||| +|||+++||+||| |+|+|+|+++ ++++.|+++||+|+| |||| |||||||+|||||||+||||+|+||+
T Consensus 158 vHRvqRvp~~es~gR~hTS~asV~V~Pe~~--~~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~ 235 (342)
T 1rq0_A 158 VHRVQRVPVTESGGRIHTSTATVAVLPEIE--EKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQN 235 (342)
T ss_dssp EEEEEECCTTSCSCCCEEEEEEEEEEECCC--GGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEE
T ss_pred eEEEEecCCcccCCCCcccceEEEEecccc--ccccccChhHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECC
Confidence 99999 9999999999999 9999999984 378899999999999 8999 99999999999999999999999996
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.94 E-value=6.8e-28 Score=188.38 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=66.2
Q ss_pred ceeEE-cCCCCCCCCcccc-eeEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCceEEEeec
Q 026662 160 AHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVQSLG 234 (235)
Q Consensus 160 vhrv~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H~PTGi~V~~q~ 234 (235)
-|||| +|++++.| || ++|+|+|+. |+...+.|+++||+|+| +||| |||||||+|||||+|+||||+|.||+
T Consensus 10 g~rvqrvp~tes~g---ts~~~v~v~p~~-d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~ 85 (115)
T 2rsm_A 10 GLRLQEKPALLFPG---MAASTVQVAGRK-DYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQ 85 (115)
T ss_dssp CCCCCCCCCCCCCC---CCCCCCCCCSCC-CCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECC
T ss_pred ceeEEecCcccCCc---cceEEEEecccc-CCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcC
Confidence 38999 99999998 99 999999998 34567899999999999 8999 99999999999999999999999996
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.62 E-value=3.7e-16 Score=122.33 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=36.1
Q ss_pred CCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEE-eecCc
Q 026662 189 TSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQ-HIPTG 227 (235)
Q Consensus 189 ~~~~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~-H~PTG 227 (235)
+.+++.|+++||+|+| |||| |||||||+|||||+ |+|||
T Consensus 11 ~~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~ 53 (112)
T 1j26_A 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASA 53 (112)
T ss_dssp CSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGC
T ss_pred cceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEecccc
Confidence 3467889999999999 9999 99999999999997 99998
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.58 E-value=7.9e-16 Score=119.76 Aligned_cols=43 Identities=14% Similarity=0.395 Sum_probs=40.7
Q ss_pred CCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEe------ec-----------------Cc-eEEEeec
Q 026662 192 DLQISDEDLLFSS--PSLP-GERQSIAKPAACIQH------IP-----------------TG-IAVQSLG 234 (235)
Q Consensus 192 ~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~H------~P-----------------TG-i~V~~q~ 234 (235)
++.|+++||+|+| |||| |||||||+|||||+| +| || |+|+||+
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~ 76 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQ 76 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECC
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECC
Confidence 5789999999999 9999 999999999999999 99 99 9999996
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.47 E-value=1.4e-14 Score=117.52 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=40.4
Q ss_pred CCcCCCCCeEEec--CCCC-CCcccCCCCeeEEE------eecC------------------ceEEEeec
Q 026662 192 DLQISDEDLLFSS--PSLP-GERQSIAKPAACIQ------HIPT------------------GIAVQSLG 234 (235)
Q Consensus 192 ~~~i~~~dl~i~t--~sG~-GQhVNkteSAVRi~------H~PT------------------Gi~V~~q~ 234 (235)
++.|+++||+|+| |||| |||||||+|||+|+ |+|| ||+|.||+
T Consensus 7 ~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~ 76 (140)
T 4dh9_Y 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQE 76 (140)
T ss_dssp SSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECC
T ss_pred CCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcC
Confidence 5789999999999 9999 99999999999999 7998 59999996
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=89.96 E-value=0.53 Score=34.36 Aligned_cols=33 Identities=12% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCCCcCC-CCHHHHHHHHHHHHhHHHHHHH-HHHH
Q 026662 2 VRNYNLW-DDPTKSNEVLVKLADSLKVVNA-LKDL 34 (235)
Q Consensus 2 msdP~~W-dD~~ka~~~~~el~~l~~~~~~-~~~~ 34 (235)
|+||+|| +|+.+.++++.++..+...++. |.+|
T Consensus 45 ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 45 VADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999 6899999999999888776664 4444
No 12
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=75.25 E-value=30 Score=27.62 Aligned_cols=73 Identities=8% Similarity=0.111 Sum_probs=47.4
Q ss_pred CCCcCC---CCHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHHHHHHH
Q 026662 3 RNYNLW---DDPTKSNEVLVKLADSLKVVNAL-KDLRYKAEEAKLIAQLAEME-AIDYGLFKRAYRASLDVSKLLDQY 75 (235)
Q Consensus 3 sdP~~W---dD~~ka~~~~~el~~l~~~~~~~-~~~~~~~~e~~~l~el~~~~-~~D~el~~~a~ee~~~l~~~l~~l 75 (235)
+||++. .|...+.++++++..-...+..| ..+...+++-+.+.+|++.- ..-.+.+.++...++..++.++++
T Consensus 56 sd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv 133 (152)
T 4fla_A 56 QDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARV 133 (152)
T ss_dssp TCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 67888999999999988888887 45667777777777777531 112334555555555555544433
No 13
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=58.37 E-value=98 Score=29.09 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCCCCcCCCCH---HHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHH
Q 026662 1 MVRNYNLWDDP---TKSNEVLVK-------LADSLKVVNALKDLRYKAEEAK 42 (235)
Q Consensus 1 ~msdP~~WdD~---~ka~~~~~e-------l~~l~~~~~~~~~~~~~~~e~~ 42 (235)
||-|.++.-+. +..++-++. +..+..+-+.|+++...+++++
T Consensus 6 mmldi~~~r~~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~ 57 (484)
T 3lss_A 6 MVLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASK 57 (484)
T ss_dssp CCCCGGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHcCCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899888444 555555543 2333334444555555555443
No 14
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=56.16 E-value=39 Score=22.01 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 026662 32 KDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 32 ~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le 76 (235)
.+++.+++|++.+++.+ .-+-.+..+..++..++..+..++
T Consensus 7 eeL~~DL~El~~Ll~~A----kR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 7 EELQKDLEEVKVLLEKA----TRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHHHHHHHHHHC----CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777888888888765 467788999999999987776554
No 15
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=50.09 E-value=85 Score=29.82 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=42.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Q 026662 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (235)
Q Consensus 2 msdP~~WdD~~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~l 75 (235)
+++|+| +|+++++.++....|-..+.....+....++.+.+.+ -++.+++++..+++.++++
T Consensus 145 ~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~----------eLk~lE~eL~e~e~eL~~l 206 (536)
T 3err_A 145 MSNPSY--NYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRN----------ELQKLEDDAKDNQQKLEAL 206 (536)
T ss_dssp TTSTTC--SHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC--CHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHH----------HHHHHHHHHHHHHHHHHHH
Confidence 567776 7889999999888888888776666655555555443 2445555666666666554
No 16
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=47.93 E-value=25 Score=25.77 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=36.6
Q ss_pred CceeEEEEEEeec---------cccccccccccceeEEcCCCCCCCCcccc--eeEEeeeC
Q 026662 136 GGVKSATIEFEFE---------YAFGYLSGETGAHCLINFPNGSFPHEATL--ACVDVVPL 185 (235)
Q Consensus 136 ~g~k~~~~~i~g~---------~a~~~l~~e~Gvhrv~~~~~~~~~r~~ts--~~V~v~P~ 185 (235)
+++.++.|.+.|. +.|.+--. .|.|.+..=.++..|...+| ++|.|-+.
T Consensus 30 g~V~kVef~vdg~~vg~dt~apy~~~w~~~-~G~htl~a~AtD~~G~~~tS~~v~vtV~~~ 89 (98)
T 3pe9_A 30 GKISRVDFLVDGEVIGSDREAPYEYEWKAV-EGNHEISVIAYDDDDAASTPDSVKIFVKQA 89 (98)
T ss_dssp SCEEEEEEEETTEEEEEECSSSEEEEEECC-SEEEEEEEEEEETTCCBCCCEEEEEEEECC
T ss_pred CCEEEEEEEECCEEecccccCCEEEEEEcC-CccEEEEEEEEECCCCEEeeeEEEEEECch
Confidence 4599999999874 44555444 89999996677888999998 56665443
No 17
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.33 E-value=2.2e+02 Score=26.69 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCCCcCC-C----CHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHH
Q 026662 2 VRNYNLW-D----DPTKSNEVLVK-------LADSLKVVNALKDLRYKAEEAK 42 (235)
Q Consensus 2 msdP~~W-d----D~~ka~~~~~e-------l~~l~~~~~~~~~~~~~~~e~~ 42 (235)
|-|..+. + ||+..++-++. +..+..+-+.|++++..+++++
T Consensus 1 Mldi~~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~ 53 (485)
T 3qne_A 1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHN 53 (485)
T ss_dssp CCCGGGGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666 4 78887766664 2333333334455555554443
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.98 E-value=1.3e+02 Score=27.80 Aligned_cols=21 Identities=10% Similarity=-0.064 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026662 56 GLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 56 el~~~a~ee~~~l~~~l~~le 76 (235)
+...++.+|...+.+++.+++
T Consensus 558 ~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 19
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.82 E-value=2e+02 Score=26.18 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHH
Q 026662 9 DDPTKSNEVLVK------LADSLKVVNALKDLRYKAEEAK 42 (235)
Q Consensus 9 dD~~ka~~~~~e------l~~l~~~~~~~~~~~~~~~e~~ 42 (235)
+||+..++-++. +..+..+-+.|+++...+++++
T Consensus 9 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~ 48 (421)
T 1ses_A 9 QEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQ 48 (421)
T ss_dssp HCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777665553 3333344444555555555544
No 20
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=39.79 E-value=70 Score=28.99 Aligned_cols=65 Identities=8% Similarity=0.097 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 026662 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 12 ~ka~~~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le 76 (235)
.+..+-..+|.++...++.|+.....++++.+|++..++.+.-.+-++.+..++..++..+..+-
T Consensus 32 ~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 32 QSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455567888888899999999988888887762222111112335566677777776554443
No 21
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.44 E-value=1.7e+02 Score=26.97 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCCcCC-CCHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHH-----------HHHhhccccHHHHH---H
Q 026662 2 VRNYNLW-DDPTKSNEVLVKLAD------SLKVVNALKDLRYKAEEAKLIA-----------QLAEMEAIDYGLFK---R 60 (235)
Q Consensus 2 msdP~~W-dD~~ka~~~~~el~~------l~~~~~~~~~~~~~~~e~~~l~-----------el~~~~~~D~el~~---~ 60 (235)
|-|.++. +||+..++-++.-.. +..+++.+.++++...+++.+. ++....++-.++++ .
T Consensus 1 mld~~~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~ 80 (455)
T 2dq0_A 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSRE 80 (455)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHH
T ss_pred CCCHHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH------HHhcCCCCCCcCCc
Q 026662 61 AYRASLDVSKLLDQYE------MSKLLRGPNDVEGA 90 (235)
Q Consensus 61 a~ee~~~l~~~l~~le------~~~l~~~~~D~~~~ 90 (235)
+.++++.+++.+.+++ +..||.-+.+.-++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~ 116 (455)
T 2dq0_A 81 IVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPV 116 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
No 22
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=36.98 E-value=89 Score=22.06 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Q 026662 31 LKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (235)
Q Consensus 31 ~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~l 75 (235)
..+++.+++|++.|++.++ -+-.+..+..++..++..+..+
T Consensus 5 ~eeL~~DLeEl~~Ll~~Ak----R~rVk~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEKST----RKRLRDTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888764 5668888888999988777654
No 23
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=36.84 E-value=34 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=15.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHhHH
Q 026662 3 RNYNLWDDPTKSNEVLVKLADSL 25 (235)
Q Consensus 3 sdP~~WdD~~ka~~~~~el~~l~ 25 (235)
.|.++|||..-.+..-+..+..+
T Consensus 4 ddSDiWDdtALIKayDKAVaSfk 26 (37)
T 3s6n_M 4 DDSDIWDDTALIKAYDKAVASFK 26 (37)
T ss_pred cchhhhhhHHHHHHHHHHHHHHH
Confidence 36789999876665555555444
No 24
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=35.92 E-value=1.5e+02 Score=23.03 Aligned_cols=47 Identities=13% Similarity=-0.111 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 026662 26 KVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 26 ~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le 76 (235)
.+++.|..-...+.-++-+++- ..|+|++++++..++.+++.++.++
T Consensus 21 ~lW~~l~~~~~~i~~~~~f~~~----~~D~elk~iL~~~~~~~~~~i~~l~ 67 (171)
T 2rbd_A 21 STWTYLSTNNGLINGYRSFINH----TGDEDLKNLIDEAIQAMQDENHQLE 67 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555553 3599999999999988888887775
No 25
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=35.90 E-value=32 Score=25.99 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026662 3 RNYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 3 sdP~~WdD~~ka~~~~~el~~ 23 (235)
..|.||.|+++++++...+..
T Consensus 67 A~p~IW~~~~~F~~~~~~~~~ 87 (125)
T 1mqv_A 67 ALPKIFEDKAKFDDLFAKLAA 87 (125)
T ss_dssp BCGGGGGSHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHH
Confidence 459999999999888877654
No 26
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=35.86 E-value=28 Score=25.42 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=13.4
Q ss_pred CCcCCCCHHHHHHHHHHHHhHHH
Q 026662 4 NYNLWDDPTKSNEVLVKLADSLK 26 (235)
Q Consensus 4 dP~~WdD~~ka~~~~~el~~l~~ 26 (235)
.|++|++++.+.++...+..|..
T Consensus 55 ~p~iw~~~~~F~~l~~~~~~l~~ 77 (106)
T 3de8_A 55 SPEMHDFRHGFDILVGQIHDALH 77 (106)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHhHHHHHHHHHHHHHHHH
Confidence 35677777777665554444433
No 27
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=33.12 E-value=38 Score=26.03 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=16.5
Q ss_pred CCcCCCCHHHHHHHHHHHHh
Q 026662 4 NYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 4 dP~~WdD~~ka~~~~~el~~ 23 (235)
.|.||+|++++.+....+..
T Consensus 74 kp~IW~~~~~F~~~~~~~~~ 93 (131)
T 3vrc_A 74 KPELFQNLEDVGKLARDLGT 93 (131)
T ss_dssp CGGGGGCHHHHHHHHHHHHH
T ss_pred CHHHHhCHHHHHHHHHHHHH
Confidence 59999999999888776654
No 28
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=31.98 E-value=2.1e+02 Score=23.37 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhc
Q 026662 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121 (235)
Q Consensus 54 D~el~~~a~ee~~~l~~~l~~le~~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~ 121 (235)
|.|+..++...+..++..+.+|--. .. |...++ .-...+.+=...++..|.++....
T Consensus 105 d~Ell~eL~~~Ck~~qp~i~~Li~e---~~--ddee~L------~elL~~ND~Ln~vl~kY~~~~~g~ 161 (186)
T 1oxz_A 105 SEDLMKELYQRCERMRPTLFRLASD---TE--DNDEAL------AEILQANDNLTQVINLYKQLVRGE 161 (186)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH---CC--SCHHHH------HHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH---cc--CCHHHH------HHHHHhhHHHHHHHHHHHHHhcCC
Confidence 6688888888888888777654221 11 111111 112344555667777888876554
No 29
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=31.79 E-value=1.2e+02 Score=23.34 Aligned_cols=24 Identities=0% Similarity=-0.014 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 026662 53 IDYGLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 53 ~D~el~~~a~ee~~~l~~~l~~le 76 (235)
.|.++......|++.|.+.|..+.
T Consensus 33 gd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 33 EAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999887774
No 30
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=30.68 E-value=1.8e+02 Score=22.27 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCC-------cCCceEEE
Q 026662 24 SLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS--KLLRGPND-------VEGASVTI 94 (235)
Q Consensus 24 l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~le~~--~l~~~~~D-------~~~~~leI 94 (235)
...+++.++++.....+...-++-+.+.-.|++++..+.+-...-...+.+|+.. .+-..|.+ ....|+.|
T Consensus 9 ~~~~i~~Ln~Li~~~~D~~~gY~~aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~~g~~hr~~~~l 88 (153)
T 4etr_A 9 LDDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDL 88 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3566777777777777777666656555568999988888888877777777633 23333332 23477888
Q ss_pred ecCCCch--HH----HHHH-HHHHHHHHHHHH
Q 026662 95 KAGSNGI--CP----EIWA-EQLLNMYVRWAD 119 (235)
Q Consensus 95 ~aG~GG~--Ea----~~~a-~~L~~my~~~a~ 119 (235)
++-.+|. ++ +... ....+.|.+..+
T Consensus 89 ks~~~~~~~~~iL~~~~~gE~~~~~~Y~~al~ 120 (153)
T 4etr_A 89 KSLVTGKDEEAVLNECERGEDVAKHRYQAALE 120 (153)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8775442 22 2222 234567776654
No 31
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.21 E-value=77 Score=29.87 Aligned_cols=44 Identities=9% Similarity=-0.048 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEE
Q 026662 100 GICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATI 143 (235)
Q Consensus 100 G~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~ 143 (235)
+.++..+...++++|.++.+..|+.+.++....++.++..+-++
T Consensus 309 pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~ty 352 (485)
T 3qne_A 309 PEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKY 352 (485)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhhe
Confidence 46788889999999999999999999999998888765333333
No 32
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=28.85 E-value=96 Score=23.29 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026662 3 RNYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 3 sdP~~WdD~~ka~~~~~el~~ 23 (235)
..|.||.|+++++++...+..
T Consensus 71 A~p~IW~~~~~F~~~~~~~~~ 91 (129)
T 2j8w_A 71 AKPAVWSDAAGFKAAADKFAA 91 (129)
T ss_dssp BCTHHHHTHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHH
Confidence 468999999999888777554
No 33
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=28.74 E-value=1.2e+02 Score=21.14 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHHHH
Q 026662 31 LKDLRYKAEEAKLIAQLAEMEA--IDYGLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 31 ~~~~~~~~~e~~~l~el~~~~~--~D~el~~~a~ee~~~l~~~l~~le 76 (235)
++.+-=.++|++.++.+..... .-+++.+.+.+.+..+++++.+|+
T Consensus 12 lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~ 59 (99)
T 1q08_A 12 ARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQ 59 (99)
T ss_dssp HHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335667777766542111 124667777777777777776664
No 34
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=28.16 E-value=1e+02 Score=23.07 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=15.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026662 3 RNYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 3 sdP~~WdD~~ka~~~~~el~~ 23 (235)
..|.+|.|+++++++...+..
T Consensus 68 A~p~IW~~~~~F~~~~~~~~~ 88 (127)
T 2ykz_A 68 ARPEIWSDAASFKQKQQAFQD 88 (127)
T ss_dssp BCTHHHHCHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHH
Confidence 358899999988887776553
No 35
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=27.10 E-value=32 Score=26.14 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=16.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026662 3 RNYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 3 sdP~~WdD~~ka~~~~~el~~ 23 (235)
..|.||+|+++++++...+..
T Consensus 72 Akp~IW~~~~~F~~~~~~~~~ 92 (130)
T 1gqa_A 72 AKAAIWQDADGFQAKGMAFFE 92 (130)
T ss_dssp BCTHHHHCHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHH
Confidence 358999999999888777554
No 36
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=25.67 E-value=35 Score=25.90 Aligned_cols=21 Identities=5% Similarity=0.142 Sum_probs=16.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026662 3 RNYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 3 sdP~~WdD~~ka~~~~~el~~ 23 (235)
..|.||.|+++++++...+..
T Consensus 70 A~p~IW~~~~~F~~~~~~~~~ 90 (129)
T 1cpq_A 70 AKAAIWANMDDFGAKGKAMHE 90 (129)
T ss_dssp BCTHHHHSHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHH
Confidence 358899999999888777554
No 37
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.95 E-value=2.6e+02 Score=22.19 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHH
Q 026662 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119 (235)
Q Consensus 54 D~el~~~a~ee~~~l~~~l~~le~~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~ 119 (235)
|.|+..++...+..++..+.+|--. .. |...++ .-.....+=...++..|.++..
T Consensus 89 d~Ell~eL~~~Ck~~qp~i~~Li~e---~~--ddee~L------~elL~~ND~Ln~vl~kY~~~~~ 143 (158)
T 1naf_A 89 SEDLMKELYQRCERMRPTLFRLASD---TE--DNDEAL------AEILQANDNLTQVINLYKQLVR 143 (158)
T ss_dssp CTTHHHHHHHHHHTHHHHHHHHHHH---CC--SCHHHH------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH---cc--CCHHHH------HHHHHhhHHHHHHHHHHHHHhc
Confidence 5588888888888888777554221 11 111111 1123444556667777777743
No 38
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=24.89 E-value=2.6e+02 Score=22.14 Aligned_cols=114 Identities=17% Similarity=0.055 Sum_probs=46.5
Q ss_pred cCCCCHHHHHHHHHHHHhHHHHHHHHH------------HHHHHHHHHHHHHHHHhhcc-ccH---HHHHHHHHHHHHHH
Q 026662 6 NLWDDPTKSNEVLVKLADSLKVVNALK------------DLRYKAEEAKLIAQLAEMEA-IDY---GLFKRAYRASLDVS 69 (235)
Q Consensus 6 ~~WdD~~ka~~~~~el~~l~~~~~~~~------------~~~~~~~e~~~l~el~~~~~-~D~---el~~~a~ee~~~l~ 69 (235)
.-|.++...+++.+++......+.... ++++-+.-+....+++.... .++ +..+.+......+.
T Consensus 11 ~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~ 90 (268)
T 4ew8_A 11 SSGLVPRGSHMLQSALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLA 90 (268)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 344455556666655555444444333 33333344444455543211 222 23444455555555
Q ss_pred HHHHHHH-HHhcCCCCCCcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEEEE
Q 026662 70 KLLDQYE-MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVV 128 (235)
Q Consensus 70 ~~l~~le-~~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~~~ 128 (235)
..++.+. ...+..+...... -...-..++..+...|...+..++..+.+-
T Consensus 91 ~~i~~l~~~~~~~~~~~~~~~---------~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~ 141 (268)
T 4ew8_A 91 RSIDDVLDMAQIDAGEMALEI---------EDIRVSDLLLNAQERALKDAQLGGVTLAVE 141 (268)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC---------EEEEHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhhcCCcceee---------eeccHHHHHHHHHHHHHhhhhccCceEEEE
Confidence 5555543 2122222211111 122335567777777777777777777653
No 39
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained modeling and minimization., electron transport; HET: HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Probab=24.73 E-value=39 Score=25.72 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=16.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026662 3 RNYNLWDDPTKSNEVLVKLAD 23 (235)
Q Consensus 3 sdP~~WdD~~ka~~~~~el~~ 23 (235)
+.|.||.|++++.+....+..
T Consensus 71 A~p~IW~~~~~F~~~~~~~~~ 91 (129)
T 1s05_A 71 SSPKIWAERAKFDTEIADFAK 91 (129)
T ss_dssp CCTHHHHTHHHHHHHHHHHHH
T ss_pred ccHHHHhCHHHHHHHHHHHHH
Confidence 458999999999888776554
No 40
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=24.70 E-value=2.1e+02 Score=23.74 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=21.3
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 026662 42 KLIAQLAEMEAIDYGLFKRAYRASLDVSKLL 72 (235)
Q Consensus 42 ~~l~el~~~~~~D~el~~~a~ee~~~l~~~l 72 (235)
+.|.+++.....+++.+..|.+.+..|....
T Consensus 101 E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~ 131 (197)
T 3tuf_A 101 EELNAIVSSDDATAKEKSEAYDKMTALSEVE 131 (197)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3444444433356889999999998887665
No 41
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.54 E-value=2e+02 Score=20.83 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHH
Q 026662 29 NALKDLRYKAEEAKLIAQLAE--MEAIDYGLFKRAYRASLDVSKLLDQYE 76 (235)
Q Consensus 29 ~~~~~~~~~~~e~~~l~el~~--~~~~D~el~~~a~ee~~~l~~~l~~le 76 (235)
..+++++..++|+++|++-.+ -..-++..+......+...+..++.++
T Consensus 49 ~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 49 KLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666654221 112245556666666666666655554
No 42
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=23.56 E-value=1.2e+02 Score=28.69 Aligned_cols=42 Identities=14% Similarity=-0.005 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCceeEEEE
Q 026662 102 CPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATI 143 (235)
Q Consensus 102 Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k~~~~ 143 (235)
++......++++|.++.+..|+.+.++....++.++..+-++
T Consensus 399 ~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~tgdlg~~a~~~y 440 (536)
T 3err_A 399 ASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQV 440 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCChhhee
Confidence 788888999999999999999999999999888765444433
No 43
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=21.61 E-value=51 Score=24.88 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=14.4
Q ss_pred HHHHHhcCCeEEEEecc
Q 026662 115 VRWADKEGYRGRVVDKC 131 (235)
Q Consensus 115 ~~~a~~~g~~~~~~~~~ 131 (235)
..||+++||.+.|.+..
T Consensus 73 iayAek~G~~y~V~ep~ 89 (108)
T 2lju_A 73 IAYAVAHKIDYTVLQDN 89 (108)
T ss_dssp HHHHHHTTCEEEEECSS
T ss_pred HHHHHHcCCEEEEecCC
Confidence 57999999999998644
No 44
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=21.55 E-value=1.4e+02 Score=27.27 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hhhcc---ccHHHHHHHHHHHHHHHHHH
Q 026662 18 LVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEA---IDYGLFKRAYRASLDVSKLL 72 (235)
Q Consensus 18 ~~el~~l~~~~~~~~~~~~~~~e~~~l~el-~~~~~---~D~el~~~a~ee~~~l~~~l 72 (235)
..+|.++...++.|+.....++++.+|++. ..+.+ .-.+-++.+..++..++..|
T Consensus 52 ~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l 110 (371)
T 1zbt_A 52 EANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKL 110 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777766532 11100 11223456666677776544
No 45
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.48 E-value=1.3e+02 Score=28.24 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCce
Q 026662 101 ICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGV 138 (235)
Q Consensus 101 ~Ea~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~ 138 (235)
.++..+...++++|.++.+..|+.+.++....++.++.
T Consensus 345 e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tgdlg~~ 382 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLP 382 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcccCCc
Confidence 58888999999999999999999999999888876543
No 46
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.46 E-value=1.3e+02 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEecccCCCCcee
Q 026662 103 PEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVK 139 (235)
Q Consensus 103 a~~~a~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~k 139 (235)
+..+...++++|.++.+..|+.+.++....++.++..
T Consensus 335 s~~e~e~~~~~~e~il~~LGLpyrvv~l~tgdlg~~a 371 (484)
T 3lss_A 335 SWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAA 371 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCch
Confidence 8888899999999999999999999999988876533
No 47
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.01 E-value=2.3e+02 Score=20.23 Aligned_cols=18 Identities=6% Similarity=-0.104 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026662 56 GLFKRAYRASLDVSKLLD 73 (235)
Q Consensus 56 el~~~a~ee~~~l~~~l~ 73 (235)
+..+.+...++.++..++
T Consensus 70 ea~~~L~~~~e~ie~~i~ 87 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLN 87 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 48
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=20.84 E-value=1.7e+02 Score=20.64 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=24.8
Q ss_pred CcCCceEEEecCCCchHHHHHHHHHHHHHHHHHHhcCCeEE
Q 026662 86 DVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126 (235)
Q Consensus 86 D~~~~~leI~aG~GG~Ea~~~a~~L~~my~~~a~~~g~~~~ 126 (235)
-.+++-+.|++-. ..-+.+|++...+..++.||+--
T Consensus 46 garnvqitisaen-----deqakelleliarllqklgykdi 81 (96)
T 2jvf_A 46 GARNVQITISAEN-----DEQAKELLELIARLLQKLGYKDI 81 (96)
T ss_dssp TCSEEEEEEECSS-----HHHHHHHHHHHHHHHHHHTCSEE
T ss_pred cccceEEEEEecC-----hHHHHHHHHHHHHHHHHhCCCce
Confidence 4566777777643 23567888888888888777643
No 49
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.84 E-value=3.1e+02 Score=21.54 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026662 9 DDPTKSNEVLVKLADSLKVVNALKDLRY 36 (235)
Q Consensus 9 dD~~ka~~~~~el~~l~~~~~~~~~~~~ 36 (235)
..|.....+.+++..+..-++.+.++-+
T Consensus 51 P~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 51 PAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666555555444433
No 50
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=20.68 E-value=58 Score=26.82 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=17.3
Q ss_pred ccCCCCeeEEEeecCceEEEee
Q 026662 212 QSIAKPAACIQHIPTGIAVQSL 233 (235)
Q Consensus 212 VNkteSAVRi~H~PTGi~V~~q 233 (235)
+-+..+.+|+.|.+||-...+.
T Consensus 137 ~~~~~~~fRL~H~~T~~yL~sh 158 (199)
T 3mal_A 137 TWKQDQRVRLQHIDTSGYLHSH 158 (199)
T ss_dssp BCBTTCEEEEEETTTCCEEEEE
T ss_pred EEEcCCeEEEEECCCCeEEeeC
Confidence 3457899999999999766553
No 51
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.59 E-value=2.3e+02 Score=27.14 Aligned_cols=24 Identities=0% Similarity=-0.018 Sum_probs=12.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 026662 16 EVLVKLADSLKVVNALKDLRYKAE 39 (235)
Q Consensus 16 ~~~~el~~l~~~~~~~~~~~~~~~ 39 (235)
.+.+.+++|+..++.|.+-.+...
T Consensus 61 DltkrINELKnqLEdlsKnsKdse 84 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSH 84 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHH
Confidence 444556666666665544444443
No 52
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=20.28 E-value=56 Score=24.71 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=15.8
Q ss_pred CCcCC-CCHHHHHHHHHHHHh
Q 026662 4 NYNLW-DDPTKSNEVLVKLAD 23 (235)
Q Consensus 4 dP~~W-dD~~ka~~~~~el~~ 23 (235)
.|.+| .|+++++++...+..
T Consensus 71 ~p~IW~~~~~~F~~~~~~~~~ 91 (128)
T 2ccy_A 71 KPEAFGSKSAEFLEGWKALAT 91 (128)
T ss_dssp CHHHHTTTHHHHHHHHHHHHH
T ss_pred cHHHHHhhHHHHHHHHHHHHH
Confidence 58899 999999888776554
No 53
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.15 E-value=2.3e+02 Score=19.84 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=31.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Q 026662 17 VLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (235)
Q Consensus 17 ~~~el~~l~~~~~~~~~~~~~~~e~~~l~el~~~~~~D~el~~~a~ee~~~l~~~l~~l 75 (235)
..++|..|...+ ..++..+.+++..+....--..|++-...+..++..++..|+.+
T Consensus 20 eqrEle~le~~I---e~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 20 LQRELEQLPQLL---EDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444 44455666666555322111236666667777777777766554
Done!