Your job contains 1 sequence.
>026665
MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASAKSTSPLNTKRSF
KVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGR
LASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEE
TFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTSVLSSFFIIVVN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026665
(235 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2203010 - symbol:emb1473 "embryo defective 147... 679 8.2e-67 1
UNIPROTKB|P0AA10 - symbol:rplM species:83333 "Escherichia... 320 9.1e-29 1
UNIPROTKB|P66065 - symbol:rplM "50S ribosomal protein L13... 307 2.2e-27 1
UNIPROTKB|Q9KUF1 - symbol:rplM "50S ribosomal protein L13... 304 4.5e-27 1
TIGR_CMR|VC_0570 - symbol:VC_0570 "ribosomal protein L13"... 304 4.5e-27 1
TIGR_CMR|SO_3940 - symbol:SO_3940 "ribosomal protein L13"... 297 2.5e-26 1
TIGR_CMR|CPS_4443 - symbol:CPS_4443 "ribosomal protein L1... 290 1.4e-25 1
TIGR_CMR|BA_0143 - symbol:BA_0143 "ribosomal protein L13"... 283 7.6e-25 1
TIGR_CMR|GSU_2876 - symbol:GSU_2876 "ribosomal protein L1... 270 1.8e-23 1
TIGR_CMR|SPO_1691 - symbol:SPO_1691 "ribosomal protein L1... 263 1.0e-22 1
TIGR_CMR|DET_0505 - symbol:DET_0505 "ribosomal protein L1... 260 2.1e-22 1
DICTYBASE|DDB_G0274959 - symbol:mrpl13 "ribosomal protein... 238 4.4e-20 1
TIGR_CMR|CHY_2274 - symbol:CHY_2274 "ribosomal protein L1... 238 4.4e-20 1
TIGR_CMR|NSE_0840 - symbol:NSE_0840 "ribosomal protein L1... 236 7.2e-20 1
TIGR_CMR|CJE_1653 - symbol:CJE_1653 "ribosomal protein L1... 233 1.5e-19 1
TIGR_CMR|ECH_1019 - symbol:ECH_1019 "ribosomal protein L1... 231 2.5e-19 1
TIGR_CMR|APH_1108 - symbol:APH_1108 "ribosomal protein L1... 218 5.8e-18 1
SGD|S000005676 - symbol:MRPL23 "Mitochondrial ribosomal p... 217 7.5e-18 1
ASPGD|ASPL0000005099 - symbol:AN9469 species:162425 "Emer... 212 2.5e-17 1
ZFIN|ZDB-GENE-050522-167 - symbol:mrpl13 "mitochondrial r... 206 1.1e-16 1
CGD|CAL0004144 - symbol:orf19.3348 species:5476 "Candida ... 194 2.0e-15 1
UNIPROTKB|Q3SYS1 - symbol:MRPL13 "39S ribosomal protein L... 192 3.3e-15 1
UNIPROTKB|E2RT81 - symbol:MRPL13 "Uncharacterized protein... 192 3.3e-15 1
UNIPROTKB|J9P023 - symbol:MRPL13 "Uncharacterized protein... 192 3.3e-15 1
UNIPROTKB|Q9BYD1 - symbol:MRPL13 "39S ribosomal protein L... 189 6.9e-15 1
UNIPROTKB|F1S286 - symbol:MRPL13 "Uncharacterized protein... 188 8.8e-15 1
POMBASE|SPBC16G5.04 - symbol:mrpl23 "mitochondrial riboso... 186 1.4e-14 1
MGI|MGI:2137218 - symbol:Mrpl13 "mitochondrial ribosomal ... 185 1.8e-14 1
TAIR|locus:2082304 - symbol:AT3G01790 species:3702 "Arabi... 185 1.8e-14 1
RGD|1359587 - symbol:Mrpl13 "mitochondrial ribosomal prot... 177 1.3e-13 1
UNIPROTKB|E5RJI7 - symbol:MRPL13 "39S ribosomal protein L... 171 5.6e-13 1
UNIPROTKB|K7GP19 - symbol:MRPL13 "Uncharacterized protein... 169 9.1e-13 1
FB|FBgn0032720 - symbol:mRpL13 "mitochondrial ribosomal p... 133 7.7e-09 1
GENEDB_PFALCIPARUM|PFB0645c - symbol:PFB0645c "Ribosomal ... 129 8.6e-07 1
UNIPROTKB|O96222 - symbol:PFB0645c "Mitochondrial large r... 129 8.6e-07 1
>TAIR|locus:2203010 [details] [associations]
symbol:emb1473 "embryo defective 1473" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PROSITE:PS00783 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412 GO:GO:0009941
GO:GO:0005840 GO:GO:0003735 GO:GO:0009579 EMBL:AC007260
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 EMBL:X87333 EMBL:AY063105 EMBL:AF370318
IPI:IPI00520181 PIR:A96815 RefSeq:NP_177984.1 UniGene:At.20962
HSSP:O59300 ProteinModelPortal:Q9SYL9 SMR:Q9SYL9 STRING:Q9SYL9
PaxDb:Q9SYL9 PRIDE:Q9SYL9 ProMEX:Q9SYL9 EnsemblPlants:AT1G78630.1
GeneID:844199 KEGG:ath:AT1G78630 GeneFarm:82 TAIR:At1g78630
HOGENOM:HOG000225286 InParanoid:Q9SYL9 KO:K02871 OMA:HVNTDKP
PhylomeDB:Q9SYL9 ProtClustDB:CLSN2679548 Genevestigator:Q9SYL9
GermOnline:AT1G78630 TIGRFAMs:TIGR01066 Uniprot:Q9SYL9
Length = 241
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 131/191 (68%), Positives = 150/191 (78%)
Query: 34 SSSTTPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEV 84
S +PFLGFS+ + S N+KR +V+C SLVP NQRWMF++ E
Sbjct: 22 SERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEA 81
Query: 85 NGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMG 144
NGPDIWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMG
Sbjct: 82 NGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMG 141
Query: 145 AYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
A+VIVVNAEKVAVSGKKR QK+YRRHSGRPGGM ETFDQLQ RIPERI+EHAVRGMLPK
Sbjct: 142 AFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPK 201
Query: 205 GRVSSLILNQI 215
GR+ + N +
Sbjct: 202 GRLGRALFNHL 212
>UNIPROTKB|P0AA10 [details] [associations]
symbol:rplM species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0008270 EMBL:U18997
GO:GO:0005840 GO:GO:0003735 PDB:2RDO PDBsum:2RDO eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066 PDB:3J0T PDB:3J0W
PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T
PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14
PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8
PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V
PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG
PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2WWQ
PDB:2Z4L PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P
PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01
PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ
PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR
PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3E1B PDBsum:3E1D
PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T
PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01
PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC
PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0
PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B EMBL:X02130
PIR:A02787 RefSeq:NP_417698.1 RefSeq:YP_491415.1 PDB:3BBX
PDBsum:3BBX ProteinModelPortal:P0AA10 SMR:P0AA10 DIP:DIP-47837N
IntAct:P0AA10 MINT:MINT-1269598 PaxDb:P0AA10 PRIDE:P0AA10
EnsemblBacteria:EBESCT00000001772 EnsemblBacteria:EBESCT00000018148
GeneID:12932920 GeneID:947828 KEGG:ecj:Y75_p3151 KEGG:eco:b3231
PATRIC:32121888 EchoBASE:EB0867 EcoGene:EG10874
BioCyc:EcoCyc:EG10874-MONOMER BioCyc:ECOL316407:JW3200-MONOMER
EvolutionaryTrace:P0AA10 Genevestigator:P0AA10 Uniprot:P0AA10
Length = 142
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 60/110 (54%), Positives = 82/110 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K
Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG + + ++
Sbjct: 73 VYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKL 122
>UNIPROTKB|P66065 [details] [associations]
symbol:rplM "50S ribosomal protein L13" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0005829
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B PIR:A70977 RefSeq:NP_217960.1
RefSeq:NP_338075.1 RefSeq:YP_006516932.1 ProteinModelPortal:P66065
SMR:P66065 PhosSite:P12061578 PRIDE:P66065
EnsemblBacteria:EBMYCT00000002385 EnsemblBacteria:EBMYCT00000071846
GeneID:13317050 GeneID:887584 GeneID:926638 KEGG:mtc:MT3548
KEGG:mtu:Rv3443c KEGG:mtv:RVBD_3443c PATRIC:18129537
TubercuList:Rv3443c OMA:FEITQVA ChEMBL:CHEMBL1933 Uniprot:P66065
Length = 147
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 60/123 (48%), Positives = 85/123 (69%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152
T+ PKA D + ++WYV+DATD +LGRLA A +RGK+ T+ P+VD G +VIV+NA
Sbjct: 3 TYAPKAGD---TTRSWYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINA 59
Query: 153 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLIL 212
+KVA+SG K K+ RHSG PGG+ + T +L R P+R++E A+ GMLPK R+S I
Sbjct: 60 DKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQ 119
Query: 213 NQI 215
++
Sbjct: 120 RKL 122
>UNIPROTKB|Q9KUF1 [details] [associations]
symbol:rplM "50S ribosomal protein L13" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216
HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10 PIR:B82308
RefSeq:NP_230221.1 ProteinModelPortal:Q9KUF1 SMR:Q9KUF1
DNASU:2615247 GeneID:2615247 KEGG:vch:VC0570 PATRIC:20080256
Uniprot:Q9KUF1
Length = 142
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 60/100 (60%), Positives = 73/100 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IVVNAEKV V+G K K
Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVVNAEKVTVTGNKAKNK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
+Y RHS PGG+K +F++L R PE ++E AV+GMLPKG
Sbjct: 73 MYHRHSEFPGGLKSFSFEKLIERKPEMVLELAVKGMLPKG 112
>TIGR_CMR|VC_0570 [details] [associations]
symbol:VC_0570 "ribosomal protein L13" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216
HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10 PIR:B82308
RefSeq:NP_230221.1 ProteinModelPortal:Q9KUF1 SMR:Q9KUF1
DNASU:2615247 GeneID:2615247 KEGG:vch:VC0570 PATRIC:20080256
Uniprot:Q9KUF1
Length = 142
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 60/100 (60%), Positives = 73/100 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IVVNAEKV V+G K K
Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVVNAEKVTVTGNKAKNK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
+Y RHS PGG+K +F++L R PE ++E AV+GMLPKG
Sbjct: 73 MYHRHSEFPGGLKSFSFEKLIERKPEMVLELAVKGMLPKG 112
>TIGR_CMR|SO_3940 [details] [associations]
symbol:SO_3940 "ribosomal protein L13" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10
RefSeq:NP_719471.1 ProteinModelPortal:Q8EAG2 SMR:Q8EAG2
GeneID:1171578 KEGG:son:SO_3940 PATRIC:23527558 Uniprot:Q8EAG2
Length = 142
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 57/110 (51%), Positives = 77/110 (70%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ W+VVDA K LGR+A+ IA+ +RGK+ YTP VD G Y+IV+NAEKV V+G K K
Sbjct: 13 RDWFVVDADGKTLGRIATEIALRLRGKHKPEYTPHVDTGDYIIVINAEKVTVTGNKAQGK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
Y HSG PGG+K+ +F++LQ PE IIE AV+GMLPKG + + ++
Sbjct: 73 TYYSHSGFPGGIKQISFEKLQAHKPEMIIEKAVKGMLPKGPLGRAMFRKL 122
>TIGR_CMR|CPS_4443 [details] [associations]
symbol:CPS_4443 "ribosomal protein L13" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_271091.1 HSSP:P0AA10 ProteinModelPortal:Q47VT1 SMR:Q47VT1
STRING:Q47VT1 GeneID:3518471 KEGG:cps:CPS_4443 PATRIC:21471723
BioCyc:CPSY167879:GI48-4452-MONOMER Uniprot:Q47VT1
Length = 142
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 53/100 (53%), Positives = 74/100 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ W++VDA DK LGR+A+ IA +RGK+ A YTP VD G Y++V+NAEKV V+G K K
Sbjct: 13 REWFLVDAEDKTLGRIATEIATRLRGKHKAEYTPHVDTGDYIVVINAEKVRVTGNKAKGK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
IY H+ PGG+K+ +F++L + P R++E AV+GMLPKG
Sbjct: 73 IYYSHTEFPGGLKQISFEKLIEKAPTRVLEFAVKGMLPKG 112
>TIGR_CMR|BA_0143 [details] [associations]
symbol:BA_0143 "ribosomal protein L13" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HSSP:O59300 HOGENOM:HOG000225286
KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:NP_842710.1 RefSeq:YP_016748.1 RefSeq:YP_026429.1
ProteinModelPortal:Q81VP9 SMR:Q81VP9 DNASU:1086446
EnsemblBacteria:EBBACT00000011142 EnsemblBacteria:EBBACT00000017416
EnsemblBacteria:EBBACT00000024437 GeneID:1086446 GeneID:2819438
GeneID:2851608 KEGG:ban:BA_0143 KEGG:bar:GBAA_0143 KEGG:bat:BAS0143
OMA:MLPKTRL BioCyc:BANT260799:GJAJ-154-MONOMER
BioCyc:BANT261594:GJ7F-156-MONOMER Uniprot:Q81VP9
Length = 145
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 51/111 (45%), Positives = 78/111 (70%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDA + LGRLAS +A +RGKN T+TP VD G +VI++NAEK+ ++G K
Sbjct: 13 ERKWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLND 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
KIY RH+ PGG+K+ T +++ P +++E A++GMLPKGR+ + ++
Sbjct: 73 KIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKL 123
>TIGR_CMR|GSU_2876 [details] [associations]
symbol:GSU_2876 "ribosomal protein L13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HSSP:O59300 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:NP_953918.1 ProteinModelPortal:Q748X4 SMR:Q748X4
GeneID:2688685 KEGG:gsu:GSU2876 PATRIC:22028613
HOGENOM:HOG000225288 BioCyc:GSUL243231:GH27-2865-MONOMER
Uniprot:Q748X4
Length = 143
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 53/119 (44%), Positives = 78/119 (65%)
Query: 97 KAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVA 156
K A + WY+VDA +K+LGR+A+ IA +RGK YTPSVD G +V+VVNA K+
Sbjct: 5 KVAKKEEVTRDWYLVDADNKVLGRMATEIANILRGKKKPIYTPSVDTGDFVVVVNAAKLQ 64
Query: 157 VSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
++G K K+Y H+G PGG+K T +L + PE +I AV+GMLPK +++ +L ++
Sbjct: 65 LTGNKLADKMYYHHTGFPGGIKSITAGKLIEKKPEDLIRKAVKGMLPKNKLARHMLKKL 123
>TIGR_CMR|SPO_1691 [details] [associations]
symbol:SPO_1691 "ribosomal protein L13" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HSSP:O59300 HOGENOM:HOG000225286 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC ProtClustDB:PRK09216
HAMAP:MF_01366_B RefSeq:YP_166930.1 ProteinModelPortal:Q5LSS5
SMR:Q5LSS5 GeneID:3193556 KEGG:sil:SPO1691 PATRIC:23376707
Uniprot:Q5LSS5
Length = 152
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 52/105 (49%), Positives = 74/105 (70%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
DK W ++DA +LGRLAS +A+ +RGK+ A++TP +DMG VIV+NA+KV ++GKKR +
Sbjct: 12 DKKWILIDAEGVVLGRLASIVAMRLRGKHKASFTPHMDMGDNVIVINADKVQITGKKREE 71
Query: 165 KIYRRHSGRPGGMKEETFDQ-LQHRIPERIIEHAVRGMLPKGRVS 208
Y H+G PGG+K T Q L+ PER++ AV+ MLP R+S
Sbjct: 72 HFYW-HTGHPGGIKSRTKQQILEGAHPERVVYQAVKRMLPGNRLS 115
>TIGR_CMR|DET_0505 [details] [associations]
symbol:DET_0505 "ribosomal protein L13" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC ProtClustDB:PRK09216
HAMAP:MF_01366_B RefSeq:YP_181249.1 ProteinModelPortal:Q3Z950
STRING:Q3Z950 GeneID:3230210 KEGG:det:DET0505 PATRIC:21608079
BioCyc:DETH243164:GJNF-505-MONOMER Uniprot:Q3Z950
Length = 143
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 50/124 (40%), Positives = 82/124 (66%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 151
NT+ KA+D + + W+V+DA+ ++LG +A+ A ++ GK+ + ++D G YV+++N
Sbjct: 2 NTYTVKASDIK---RDWHVIDASGRVLGEVAAEAAKYLMGKHKPMFCRNLDCGDYVVIIN 58
Query: 152 AEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLI 211
A+KV V+G K QKIY RHSG PGG ++E L P +IEHAV+GM+P+ + + I
Sbjct: 59 AKKVTVTGNKLDQKIYYRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGAQI 118
Query: 212 LNQI 215
L ++
Sbjct: 119 LAKL 122
>DICTYBASE|DDB_G0274959 [details] [associations]
symbol:mrpl13 "ribosomal protein L13, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
dictyBase:DDB_G0274959 GO:GO:0006412 EMBL:AAFI02000012
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066
HAMAP:MF_01366_B RefSeq:XP_644226.1 ProteinModelPortal:Q554U7
STRING:Q554U7 EnsemblProtists:DDB0217569 GeneID:8619655
KEGG:ddi:DDB_G0274959 InParanoid:Q554U7 OMA:HIIRHAV Uniprot:Q554U7
Length = 227
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 50/103 (48%), Positives = 67/103 (65%)
Query: 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDM--GAYVIVVNAEKVAVSGKK 161
S W+V+DA+ +GRLA+ I+ +RGK+ Y SV + G YV+V+NA KV +GKK
Sbjct: 12 SSHLWHVIDASGHRVGRLATKISELLRGKHKPIYDRSVPLECGDYVVVLNAHKVEFTGKK 71
Query: 162 RTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
QK+YR+HSG PGG+KE + PE II HAV GM+PK
Sbjct: 72 WDQKMYRKHSGYPGGLKETLAKDMLVENPEHIIRHAVMGMIPK 114
>TIGR_CMR|CHY_2274 [details] [associations]
symbol:CHY_2274 "ribosomal protein L13" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_361083.1 ProteinModelPortal:Q3A9V1 SMR:Q3A9V1
STRING:Q3A9V1 GeneID:3726760 KEGG:chy:CHY_2274 PATRIC:21277619
BioCyc:CHYD246194:GJCN-2273-MONOMER Uniprot:Q3A9V1
Length = 143
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 47/111 (42%), Positives = 69/111 (62%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYV+DA K LGR+AS A +RGK+ +TP VD G +VI++NAEK ++GKK +
Sbjct: 13 ERKWYVIDAAGKPLGRVASEAAKLLRGKHKPEFTPHVDTGDFVIIINAEKAVLTGKKLEK 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K++ RHS PGG+K + L P E AV+GMLP R+ + ++
Sbjct: 73 KMFYRHSRYPGGLKAIPYGILMKTNPVLAFEKAVKGMLPHNRLGRKLFKKL 123
>TIGR_CMR|NSE_0840 [details] [associations]
symbol:NSE_0840 "ribosomal protein L13" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_506708.1 ProteinModelPortal:Q2GCT8 STRING:Q2GCT8
GeneID:3932168 KEGG:nse:NSE_0840 PATRIC:22681675
BioCyc:NSEN222891:GHFU-845-MONOMER Uniprot:Q2GCT8
Length = 152
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 49/102 (48%), Positives = 68/102 (66%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
+K W VVDATD ++GRLA+ ++ +RGK TYTP +D G VIVVNA KV SG K +
Sbjct: 12 EKQWIVVDATDAVVGRLAAFVSTILRGKTKPTYTPHMDCGDNVIVVNASKVKFSGSKMSD 71
Query: 165 KIYRRHSGRPGGMKEETFDQ-LQHRIPERIIEHAVRGMLPKG 205
K+Y RH+G PGG+K T + L+ + P +++ AV+ ML G
Sbjct: 72 KVYYRHTGYPGGIKSTTPAKILRGKKPCEVVKLAVKRMLDDG 113
>TIGR_CMR|CJE_1653 [details] [associations]
symbol:CJE_1653 "ribosomal protein L13" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B PIR:E81294
RefSeq:YP_179634.1 ProteinModelPortal:Q5HSV1 STRING:Q5HSV1
GeneID:3232281 KEGG:cjr:CJE1653 PATRIC:20045101
BioCyc:CJEJ195099:GJC0-1683-MONOMER Uniprot:Q5HSV1
Length = 141
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 46/111 (41%), Positives = 68/111 (61%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ- 164
+ W V+DA K GRL + +A +RGKN +TP+VD G YVI++NA K +G + +
Sbjct: 12 REWIVLDAEGKRFGRLLTEVATILRGKNKPCFTPNVDCGDYVIIINASKAVFTGANKAED 71
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+Y RHSG G +K E F L + P ++ + AVRGMLPK + +L ++
Sbjct: 72 KLYHRHSGYFGSVKSEKFGDLLEKNPAKLYKLAVRGMLPKTNLGRAMLKKL 122
>TIGR_CMR|ECH_1019 [details] [associations]
symbol:ECH_1019 "ribosomal protein L13" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_507805.1 ProteinModelPortal:Q2GFH8 STRING:Q2GFH8
GeneID:3927274 KEGG:ech:ECH_1019 PATRIC:20577408
BioCyc:ECHA205920:GJNR-1022-MONOMER Uniprot:Q2GFH8
Length = 156
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 49/101 (48%), Positives = 65/101 (64%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
K W V+DA ++GRLA+ +A +RGK+ YTP +D G VI++NAEKV +G K K
Sbjct: 15 KRWVVIDADGVVVGRLAAFVANILRGKDKPEYTPHMDCGDNVIIINAEKVHFTGSKLKNK 74
Query: 166 IYRRHSGRPGGMKEET-FDQLQHRIPERIIEHAVRGMLPKG 205
+Y RH+G PGG+K T D ++ PERII AVR ML G
Sbjct: 75 VYYRHTGYPGGLKSCTPADLFLNKHPERIINMAVRRMLSTG 115
>TIGR_CMR|APH_1108 [details] [associations]
symbol:APH_1108 "ribosomal protein L13" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
RefSeq:YP_505656.1 ProteinModelPortal:Q2GIZ5 SMR:Q2GIZ5
STRING:Q2GIZ5 GeneID:3930273 KEGG:aph:APH_1108 PATRIC:20950974
OMA:YTPHMDC ProtClustDB:PRK09216
BioCyc:APHA212042:GHPM-1114-MONOMER HAMAP:MF_01366_B Uniprot:Q2GIZ5
Length = 158
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 48/102 (47%), Positives = 64/102 (62%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
DK W ++DA+D ++GRLA+ IA +RGK+ YTP +D G V+VVNA V + K
Sbjct: 12 DKRWVLIDASDMVVGRLAAYIATILRGKHKPEYTPHMDCGDNVVVVNASSVKFTRNKMRD 71
Query: 165 KIYRRHSGRPGGMKEET-FDQLQHRIPERIIEHAVRGMLPKG 205
K+Y RH+G PGG+K T D L+ ERII+ AV ML G
Sbjct: 72 KVYYRHTGYPGGLKSCTPNDMLRAGYAERIIKVAVWRMLGDG 113
>SGD|S000005676 [details] [associations]
symbol:MRPL23 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IDA;IPI]
[GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA;IPI] [GO:0032543 "mitochondrial translation"
evidence=IC] [GO:0005840 "ribosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
SGD:S000005676 EMBL:BK006948 GO:GO:0005762 GO:GO:0003735
GO:GO:0032543 EMBL:U55020 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC HOGENOM:HOG000225288 GeneTree:ENSGT00390000001515
OrthoDB:EOG46T69R EMBL:Z75058 EMBL:AY558133 PIR:S67038
RefSeq:NP_014793.1 ProteinModelPortal:Q12487 SMR:Q12487
DIP:DIP-5385N IntAct:Q12487 MINT:MINT-502479 STRING:Q12487
PaxDb:Q12487 PeptideAtlas:Q12487 EnsemblFungi:YOR150W GeneID:854321
KEGG:sce:YOR150W CYGD:YOR150w NextBio:976357 Genevestigator:Q12487
GermOnline:YOR150W Uniprot:Q12487
Length = 163
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 50/113 (44%), Positives = 72/113 (63%)
Query: 106 KTWYVVD-ATDK-ILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+ W+ VD A DK LGRLAS IAI + G++ Y PS D G YV+V N +K+ V+GKK
Sbjct: 14 RLWHHVDVARDKRTLGRLASAIAITLIGRHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFE 73
Query: 164 QKIYRRHSGRPGGMKEETFDQL-QHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
QK Y HSGRPG +K +T +++ + I++ AV GMLPK ++ L+++
Sbjct: 74 QKTYWSHSGRPGQLKLQTMNKVVADKGFGEILKKAVSGMLPKNKLRKQRLDRL 126
>ASPGD|ASPL0000005099 [details] [associations]
symbol:AN9469 species:162425 "Emericella nidulans"
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 GO:GO:0006412 EMBL:BN001301 GO:GO:0005762
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 OMA:YTPHMDC
HOGENOM:HOG000225288 EMBL:AACD01000194 RefSeq:XP_868851.1
ProteinModelPortal:Q5AQG1 STRING:Q5AQG1
EnsemblFungi:CADANIAT00007061 GeneID:3684066 KEGG:ani:AN9469.2
Uniprot:Q5AQG1
Length = 166
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 45/105 (42%), Positives = 65/105 (61%)
Query: 106 KTWYVVDA-TD-KILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+ W++VD +D + LGRLAS+IA+ + GKN Y PS D G YV+ V + +GKKR
Sbjct: 14 RAWHLVDVGSDGRSLGRLASSIALILMGKNKPIYDPSTDCGDYVVAVGCHDLHTTGKKRF 73
Query: 164 QKIYRRHSGRPGGMKEETFDQLQHRIPE-RIIEHAVRGMLPKGRV 207
QK Y H+ RPG ++ T D++ + ++ AVRGMLPK R+
Sbjct: 74 QKKYYTHTTRPGSLRSMTMDKMFEKWGGGEVLRRAVRGMLPKNRL 118
>ZFIN|ZDB-GENE-050522-167 [details] [associations]
symbol:mrpl13 "mitochondrial ribosomal protein L13"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
ZFIN:ZDB-GENE-050522-167 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 HOVERGEN:HBG036111 OrthoDB:EOG4Z8XXJ EMBL:BC095074
IPI:IPI00607407 RefSeq:NP_001018370.1 UniGene:Dr.82561
ProteinModelPortal:Q504D1 STRING:Q504D1 GeneID:553555
KEGG:dre:553555 InParanoid:Q504D1 NextBio:20880297 Uniprot:Q504D1
Length = 179
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 39/110 (35%), Positives = 67/110 (60%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
++W+++DA + G++AS A+ ++GK+ Y P D+G +V+V+N + +A SG K QK
Sbjct: 16 RSWFLIDARMQPPGKIASMCAVRLQGKHKPIYHPLSDIGDHVVVMNTKHIAFSGNKWEQK 75
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
+Y H+G PG K+ T QL + II+ AV GMLP+ ++ ++
Sbjct: 76 VYSSHTGHPGSFKQVTAAQLHRKDSTAIIKLAVYGMLPRNLTRRTMMQRL 125
>CGD|CAL0004144 [details] [associations]
symbol:orf19.3348 species:5476 "Candida albicans" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 CGD:CAL0004144 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000045 EMBL:AACQ01000042
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
RefSeq:XP_718171.1 RefSeq:XP_718438.1 ProteinModelPortal:Q5A8Y6
STRING:Q5A8Y6 GeneID:3639931 GeneID:3640222 KEGG:cal:CaO19.10856
KEGG:cal:CaO19.3348 Uniprot:Q5A8Y6
Length = 176
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 42/104 (40%), Positives = 66/104 (63%)
Query: 106 KTWYVVD--ATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+ W+ VD A ++ LGRLAS+IAI + GK+ TYTP+ D G YV+V N + V+G K
Sbjct: 14 RVWHHVDVAADNRSLGRLASSIAITLMGKHKPTYTPNRDHGDYVVVTNCAHLKVTGNKLK 73
Query: 164 QKIYRRHSGRPGGMKEETFDQL-QHRIPERIIEHAVRGMLPKGR 206
+K Y H+ RPG ++ +++ ++ II+ AV+GM+PK +
Sbjct: 74 EKTYWSHTTRPGTLRLVPMERMIDNKGYGEIIKRAVKGMIPKNK 117
>UNIPROTKB|Q3SYS1 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9913 "Bos taurus" [GO:0005761 "mitochondrial ribosome"
evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 GO:GO:0005761 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 HOGENOM:HOG000225288 PDB:2FTC PDBsum:2FTC
EMBL:BC103423 IPI:IPI00707300 RefSeq:NP_001029977.1
UniGene:Bt.49122 ProteinModelPortal:Q3SYS1 STRING:Q3SYS1
PRIDE:Q3SYS1 Ensembl:ENSBTAT00000008903 GeneID:617901
KEGG:bta:617901 CTD:28998 GeneTree:ENSGT00390000001515
HOVERGEN:HBG036111 InParanoid:Q3SYS1 OMA:VQQWATF OrthoDB:EOG4Z8XXJ
EvolutionaryTrace:Q3SYS1 NextBio:20900892 Uniprot:Q3SYS1
Length = 178
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 36/99 (36%), Positives = 59/99 (59%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WY++D + G+LA+ ++ ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RVWYLLDGKMQPPGKLAALASVRLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
+Y H+G PGG K+ T QL + P I++ A+ GMLPK
Sbjct: 76 VYSSHTGYPGGFKQVTAAQLHRKDPVAIVKLAIYGMLPK 114
>UNIPROTKB|E2RT81 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
TIGRFAMs:TIGR01066 GeneTree:ENSGT00390000001515 OMA:VQQWATF
EMBL:AAEX03008768 Ensembl:ENSCAFT00000001460 Uniprot:E2RT81
Length = 179
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 37/99 (37%), Positives = 59/99 (59%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WY++D + G+LA+ +I ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RVWYLLDGKMQPPGKLAAMASIKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
+Y H+G PGG K+ T QL + P I++ A+ GMLPK
Sbjct: 76 VYSSHTGYPGGFKQVTAAQLHQKDPVAIVKLAIYGMLPK 114
>UNIPROTKB|J9P023 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
TIGRFAMs:TIGR01066 GeneTree:ENSGT00390000001515 EMBL:AAEX03008768
Ensembl:ENSCAFT00000045486 Uniprot:J9P023
Length = 178
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 37/99 (37%), Positives = 59/99 (59%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WY++D + G+LA+ +I ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RVWYLLDGKMQPPGKLAAMASIKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
+Y H+G PGG K+ T QL + P I++ A+ GMLPK
Sbjct: 76 VYSSHTGYPGGFKQVTAAQLHQKDPVAIVKLAIYGMLPK 114
>UNIPROTKB|Q9BYD1 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=NAS]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IDA;NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005761 "mitochondrial ribosome" evidence=IDA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AB049640 EMBL:CH471060 GO:GO:0006412 GO:GO:0005762
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 HOVERGEN:HBG036111 OMA:VQQWATF OrthoDB:EOG4Z8XXJ
EMBL:AF112214 EMBL:AK311924 EMBL:BC009190 EMBL:BC021744
IPI:IPI00022403 RefSeq:NP_054797.2 UniGene:Hs.333823
ProteinModelPortal:Q9BYD1 SMR:Q9BYD1 IntAct:Q9BYD1 STRING:Q9BYD1
PhosphoSite:Q9BYD1 DMDM:22257023 PaxDb:Q9BYD1 PRIDE:Q9BYD1
DNASU:28998 Ensembl:ENST00000306185 GeneID:28998 KEGG:hsa:28998
UCSC:uc003ypa.3 GeneCards:GC08M121477 HGNC:HGNC:14278 MIM:610200
neXtProt:NX_Q9BYD1 PharmGKB:PA30942 InParanoid:Q9BYD1
PhylomeDB:Q9BYD1 GenomeRNAi:28998 NextBio:51932 ArrayExpress:Q9BYD1
Bgee:Q9BYD1 CleanEx:HS_MRPL13 Genevestigator:Q9BYD1
GermOnline:ENSG00000172172 Uniprot:Q9BYD1
Length = 178
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 37/99 (37%), Positives = 59/99 (59%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WY++D + G+LA+ +I ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
+Y H+G PGG ++ T QL R P I++ A+ GMLPK
Sbjct: 76 VYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPK 114
>UNIPROTKB|F1S286 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005761 "mitochondrial ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0003735 GO:GO:0005761 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 CTD:28998
GeneTree:ENSGT00390000001515 OMA:VQQWATF EMBL:CU302271
EMBL:CU468161 RefSeq:NP_001230344.1 UniGene:Ssc.20756
Ensembl:ENSSSCT00000006579 GeneID:100153348 KEGG:ssc:100153348
Uniprot:F1S286
Length = 178
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 35/99 (35%), Positives = 59/99 (59%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WY++D + G+LA+ ++ ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RVWYLLDGKMQPPGKLAAMASVKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQK 75
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
+Y H+G PGG ++ T QL + P I++ A+ GMLPK
Sbjct: 76 VYSSHTGYPGGFRQVTAAQLHQKDPVAIVKLAIYGMLPK 114
>POMBASE|SPBC16G5.04 [details] [associations]
symbol:mrpl23 "mitochondrial ribosomal protein subunit
L13 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
PomBase:SPBC16G5.04 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC HOGENOM:HOG000225288 PIR:T39596
RefSeq:NP_596753.1 ProteinModelPortal:O60118 STRING:O60118
EnsemblFungi:SPBC16G5.04.1 GeneID:2540088 KEGG:spo:SPBC16G5.04
OrthoDB:EOG46T69R NextBio:20801225 Uniprot:O60118
Length = 157
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 38/103 (36%), Positives = 61/103 (59%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
K W+ V A + LGRLAS IA + GK+ Y P+ D G V+V + ++ +SG+K
Sbjct: 14 KVWHHVSAKNVPLGRLASQIATTLMGKHKPIYHPAADCGDVVVVTDCSEIGISGRKLENH 73
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPER-IIEHAVRGMLPKGRV 207
Y HSG+PG +KE T +++ + + ++ AV GMLP+ ++
Sbjct: 74 KYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKL 116
>MGI|MGI:2137218 [details] [associations]
symbol:Mrpl13 "mitochondrial ribosomal protein L13"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005761 "mitochondrial ribosome" evidence=ISO] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
MGI:MGI:2137218 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 GeneTree:ENSGT00390000001515 HOVERGEN:HBG036111
OMA:VQQWATF OrthoDB:EOG4Z8XXJ EMBL:AB049641 EMBL:AK003283
EMBL:BC060968 IPI:IPI00134011 RefSeq:NP_081035.1 UniGene:Mm.236795
ProteinModelPortal:Q9D1P0 SMR:Q9D1P0 STRING:Q9D1P0
PhosphoSite:Q9D1P0 PaxDb:Q9D1P0 PRIDE:Q9D1P0
Ensembl:ENSMUST00000172387 GeneID:68537 KEGG:mmu:68537
UCSC:uc007vsf.1 InParanoid:Q9D1P0 NextBio:327412 Bgee:Q9D1P0
CleanEx:MM_MRPL13 Genevestigator:Q9D1P0
GermOnline:ENSMUSG00000022370 Uniprot:Q9D1P0
Length = 178
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WY++D + G+LA + ++G N Y D G +V+++N +A SG K QK
Sbjct: 16 RMWYLLDGKMQPPGKLAVIASNKLQGLNKPVYHQLSDCGDHVVIINTRHIAFSGNKWEQK 75
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
+Y H+G PGG ++ T QL + P I++ A+ GMLPK
Sbjct: 76 VYSSHTGYPGGFRQVTAAQLHRKDPVAIVKLAIYGMLPK 114
>TAIR|locus:2082304 [details] [associations]
symbol:AT3G01790 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
OMA:FEITQVA EMBL:BT010192 EMBL:AK227266 IPI:IPI00520902
RefSeq:NP_186828.2 RefSeq:NP_850494.1 UniGene:At.41230
ProteinModelPortal:Q7XA68 SMR:Q7XA68 STRING:Q7XA68 PaxDb:Q7XA68
PRIDE:Q7XA68 EnsemblPlants:AT3G01790.1 EnsemblPlants:AT3G01790.2
GeneID:821078 KEGG:ath:AT3G01790 TAIR:At3g01790 InParanoid:Q7XA68
PhylomeDB:Q7XA68 ProtClustDB:PLN00205 Genevestigator:Q7XA68
Uniprot:Q7XA68
Length = 205
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
W V DA ++LGRLAS I+ ++ K+ TY P+ D G IV+NA+++ +G+K T K Y
Sbjct: 32 WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRV 207
R H+G G +KE + + P +I AV MLP +
Sbjct: 92 RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNL 131
>RGD|1359587 [details] [associations]
symbol:Mrpl13 "mitochondrial ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005761 "mitochondrial ribosome"
evidence=IEA;ISO] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=ISO] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 RGD:1359587 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CH473950 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 HOGENOM:HOG000225288 CTD:28998
GeneTree:ENSGT00390000001515 HOVERGEN:HBG036111 OMA:VQQWATF
OrthoDB:EOG4Z8XXJ EMBL:BC084710 IPI:IPI00366411
RefSeq:NP_001006986.1 UniGene:Rn.107776 STRING:Q5XFW4
Ensembl:ENSRNOT00000005815 GeneID:299938 KEGG:rno:299938
UCSC:RGD:1359587 InParanoid:Q5XFW4 NextBio:646013
Genevestigator:Q5XFW4 Uniprot:Q5XFW4
Length = 178
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WY++D + G+LA+ + ++G + Y D G +V+++N +A SG K QK
Sbjct: 16 RMWYLLDGKMQPPGKLAAIASNKLQGLHKPVYHQLSDCGDHVVIINTRHIAFSGNKWEQK 75
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
+Y H+G PGG ++ T QL + P I++ A GMLPK
Sbjct: 76 VYSSHTGYPGGFRQVTAAQLHLKDPVAIVKLATYGMLPK 114
>UNIPROTKB|E5RJI7 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC107877 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 TIGRFAMs:TIGR01066
HGNC:HGNC:14278 IPI:IPI01011492 ProteinModelPortal:E5RJI7
SMR:E5RJI7 Ensembl:ENST00000518918 ArrayExpress:E5RJI7 Bgee:E5RJI7
Uniprot:E5RJI7
Length = 148
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 119 GRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMK 178
G+LA+ +I ++G + Y D G +V+++N +A SG K QK+Y H+G PGG +
Sbjct: 5 GKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFR 64
Query: 179 EETFDQLQHRIPERIIEHAVRGMLPK 204
+ T QL R P I++ A+ GMLPK
Sbjct: 65 QVTAAQLHLRDPVAIVKLAIYGMLPK 90
>UNIPROTKB|K7GP19 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 TIGRFAMs:TIGR01066
GeneTree:ENSGT00390000001515 EMBL:CU302271 EMBL:CU468161
Ensembl:ENSSSCT00000034332 Uniprot:K7GP19
Length = 154
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 119 GRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMK 178
G+LA+ ++ ++G + Y D G +V+++N +A SG K QK+Y H+G PGG +
Sbjct: 5 GKLAAMASVKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFR 64
Query: 179 EETFDQLQHRIPERIIEHAVRGMLPK 204
+ T QL + P I++ A+ GMLPK
Sbjct: 65 QVTAAQLHQKDPVAIVKLAIYGMLPK 90
>FB|FBgn0032720 [details] [associations]
symbol:mRpL13 "mitochondrial ribosomal protein L13"
species:7227 "Drosophila melanogaster" [GO:0006412 "translation"
evidence=ISS;NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS;NAS] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=ISS;NAS] InterPro:IPR005822 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:AE014134
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
CTD:28998 GeneTree:ENSGT00390000001515 OMA:VQQWATF EMBL:BT053702
RefSeq:NP_523598.2 UniGene:Dm.2753 ProteinModelPortal:Q9VJ38
SMR:Q9VJ38 STRING:Q9VJ38 PaxDb:Q9VJ38 EnsemblMetazoa:FBtr0089318
GeneID:35145 KEGG:dme:Dmel_CG10603 FlyBase:FBgn0032720
InParanoid:Q9VJ38 OrthoDB:EOG4WM39Z PhylomeDB:Q9VJ38
GenomeRNAi:35145 NextBio:792084 GermOnline:CG10603 Uniprot:Q9VJ38
Length = 178
Score = 133 (51.9 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 26/93 (27%), Positives = 48/93 (51%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+TW++ D T + A + H+ G Y P D G +V+++N ++A+ G + ++
Sbjct: 15 RTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMNDCGDHVVLINTREIALPGDEWVKR 74
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAV 198
+Y H+G PGG QL + P +++ AV
Sbjct: 75 VYFHHTGYPGGASWTLAWQLHEKDPTMVMKKAV 107
>GENEDB_PFALCIPARUM|PFB0645c [details] [associations]
symbol:PFB0645c "Ribosomal protein L13,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 EMBL:AE001362 GO:GO:0022625
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 PIR:F71609 RefSeq:XP_001349647.1
ProteinModelPortal:O96222 EnsemblProtists:PFB0645c:mRNA
GeneID:812729 KEGG:pfa:PFB0645c EuPathDB:PlasmoDB:PF3D7_0214200
HOGENOM:HOG000284339 OMA:IVVNAIH ProtClustDB:CLSZ2435818
Uniprot:O96222
Length = 212
Score = 129 (50.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 42/144 (29%), Positives = 67/144 (46%)
Query: 75 QRWMFEQSEVNGPDIWNNTWYPKAA-DHRHSDK-TWYVVDATDKILGRLASTIAIHIRGK 132
Q + F + + DI++ K A +K W+V+DAT+K +G LA+ I+ ++GK
Sbjct: 31 QSYPFLKKNMPKVDIFSEEHISKCALSVFDKEKGNWFVIDATNKSVGSLAACISKLLQGK 90
Query: 133 NLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYR-RHSGRPGGMKEETFDQLQHRIPE 191
Y P+ + VIVVNA V G KIY+ K + + R P
Sbjct: 91 YRVDYNPNKVNSSSVIVVNAIHVKFYGHTWDTKIYKFPRKSHSKSHKILSCKTVFARNPS 150
Query: 192 RIIEHAVRGMLPKGRVSSLILNQI 215
I+ AV+ MLP R+ + ++
Sbjct: 151 MILNLAVKRMLPNNRLRQIFYRKL 174
>UNIPROTKB|O96222 [details] [associations]
symbol:PFB0645c "Mitochondrial large ribosomal subunit,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 EMBL:AE001362 GO:GO:0022625
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 PIR:F71609 RefSeq:XP_001349647.1
ProteinModelPortal:O96222 EnsemblProtists:PFB0645c:mRNA
GeneID:812729 KEGG:pfa:PFB0645c EuPathDB:PlasmoDB:PF3D7_0214200
HOGENOM:HOG000284339 OMA:IVVNAIH ProtClustDB:CLSZ2435818
Uniprot:O96222
Length = 212
Score = 129 (50.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 42/144 (29%), Positives = 67/144 (46%)
Query: 75 QRWMFEQSEVNGPDIWNNTWYPKAA-DHRHSDK-TWYVVDATDKILGRLASTIAIHIRGK 132
Q + F + + DI++ K A +K W+V+DAT+K +G LA+ I+ ++GK
Sbjct: 31 QSYPFLKKNMPKVDIFSEEHISKCALSVFDKEKGNWFVIDATNKSVGSLAACISKLLQGK 90
Query: 133 NLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYR-RHSGRPGGMKEETFDQLQHRIPE 191
Y P+ + VIVVNA V G KIY+ K + + R P
Sbjct: 91 YRVDYNPNKVNSSSVIVVNAIHVKFYGHTWDTKIYKFPRKSHSKSHKILSCKTVFARNPS 150
Query: 192 RIIEHAVRGMLPKGRVSSLILNQI 215
I+ AV+ MLP R+ + ++
Sbjct: 151 MILNLAVKRMLPNNRLRQIFYRKL 174
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.133 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 235 224 0.00099 112 3 11 22 0.49 32
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 611 (65 KB)
Total size of DFA: 189 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.43u 0.09s 21.52t Elapsed: 00:00:01
Total cpu time: 21.43u 0.09s 21.52t Elapsed: 00:00:01
Start: Sat May 11 00:56:00 2013 End: Sat May 11 00:56:01 2013