BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026665
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYL9|RK13_ARATH 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana
GN=RPL13 PE=1 SV=1
Length = 241
Score = 275 bits (704), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 130/187 (69%), Positives = 149/187 (79%), Gaps = 9/187 (4%)
Query: 38 TPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEVNGPD 88
+PFLGFS+ + S N+KR +V+C SLVP NQRWMF++ E NGPD
Sbjct: 26 SPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPD 85
Query: 89 IWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVI 148
IWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+VI
Sbjct: 86 IWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVI 145
Query: 149 VVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVS 208
VVNAEKVAVSGKKR QK+YRRHSGRPGGM ETFDQLQ RIPERI+EHAVRGMLPKGR+
Sbjct: 146 VVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLG 205
Query: 209 SLILNQI 215
+ N +
Sbjct: 206 RALFNHL 212
>sp|P12629|RK13_SPIOL 50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea
GN=RPL13 PE=1 SV=1
Length = 250
Score = 259 bits (661), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/231 (59%), Positives = 159/231 (68%), Gaps = 26/231 (11%)
Query: 1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASA---------KST 51
MAT+ + + F S Q+ S GT + TP L F + KST
Sbjct: 1 MATMACASSLTFPSAQTQKSF-------FGTNVKQ--TPVLSFPRPTVAAAVAVSARKST 51
Query: 52 SPLNTK-----RSFKVRCCQNLSL--VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHS 104
S +TK R K + ++ VP +QRWMF E GPDIWN TWYPK+ADH +
Sbjct: 52 S-ASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPT 110
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
DK WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+VIVVNA+KVAVSGKKRTQ
Sbjct: 111 DKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQ 170
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGG+KEETFDQLQ RIPERIIEHAVRGMLPKGR+ + N +
Sbjct: 171 KLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHL 221
>sp|Q3MF94|RL13_ANAVT 50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rplM PE=3 SV=1
Length = 151
Score = 167 bits (423), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 92/111 (82%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNAEKVAV+GKKRTQ
Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAEKVAVTGKKRTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK + + ++
Sbjct: 73 KLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKL 123
>sp|Q8YPK6|RL13_NOSS1 50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rplM PE=3 SV=1
Length = 151
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNA+KVAV+GKKRTQ
Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAKKVAVTGKKRTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK + + ++
Sbjct: 73 KLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKL 123
>sp|Q6H001|RL13_FREDI 50S ribosomal protein L13 OS=Fremyella diplosiphon GN=rplM PE=3
SV=2
Length = 151
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 91/111 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WY+VDATD+ LGRLAS IA+ +RGK A YTP +D G +VIV+NAEK+AV+GKKRTQ
Sbjct: 13 EREWYIVDATDQRLGRLASEIAMVLRGKKKAEYTPHLDTGDFVIVINAEKIAVTGKKRTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGGMK ETF +LQ RIPERI+EHAV+GMLPK + + ++
Sbjct: 73 KLYRRHSGRPGGMKTETFAKLQQRIPERIVEHAVKGMLPKNSLGKQLFTKL 123
>sp|B8HMT1|RL13_CYAP4 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rplM PE=3 SV=1
Length = 149
Score = 160 bits (405), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 90/114 (78%), Gaps = 3/114 (2%)
Query: 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
N T+ P + WYVVDAT++ LGRLA+ IA+ +RGK YTPS+D G +VIVV
Sbjct: 2 NKTYLPSTTS---LEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 58
Query: 151 NAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
NAEKVAV+GKKRTQKIYRRHSGRPGGMK ETF +LQ R+PERIIEHAV+GMLPK
Sbjct: 59 NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPK 112
>sp|Q8DMK8|RL13_THEEB 50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rplM PE=3 SV=1
Length = 152
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 88/108 (81%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WYV+DA D+ LGRLA+ IA +RGKN A YTP +D G +VIV+NAEKV V+GKKR+QK+Y
Sbjct: 19 WYVIDAADQRLGRLAAEIARILRGKNKAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLY 78
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
RRHSGRPGGMK ETFDQLQ RIPERIIEHAV+GMLPK + + ++
Sbjct: 79 RRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSLGRKLFTKL 126
>sp|B0JY35|RL13_MICAN 50S ribosomal protein L13 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplM PE=3 SV=1
Length = 151
Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 90/111 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYV+DA D+ LGRLA+ IA+ +RGKN AT+TP +D G +VIV+NAEKV V+GKKR Q
Sbjct: 13 EQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRR SGRPGGMK E+FD+LQ RIPERIIEHAV+GMLPK + + ++
Sbjct: 73 KVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSLGRKLFTKL 123
>sp|B7K221|RL13_CYAP8 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 8801)
GN=rplM PE=3 SV=1
Length = 151
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 89/111 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYV+DA D+ LGRLAS +A +RGKN T+TP +D G +VI+VNAEKV V+GKK +Q
Sbjct: 13 DQKWYVIDAADQRLGRLASEVAQILRGKNKPTFTPHMDTGDFVIIVNAEKVVVTGKKSSQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGGMK ETF++LQ R+PERI+EHAV+GMLPK + + ++
Sbjct: 73 KLYRRHSGRPGGMKVETFEKLQARLPERIVEHAVKGMLPKNSLGRKLFTKL 123
>sp|B1XJI1|RL13_SYNP2 50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rplM PE=3 SV=1
Length = 151
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 87/111 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA D+ LGRLAS +A +RGKN A YTP +D G +VIVVNAEKV V+G+K Q
Sbjct: 13 DQKWYVVDAADQRLGRLASEVAKVLRGKNKAEYTPHMDTGDFVIVVNAEKVVVTGRKPEQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGGMK ETF+QLQ RIPERIIE AV+GMLPK + + ++
Sbjct: 73 KLYRRHSGRPGGMKVETFNQLQDRIPERIIEKAVKGMLPKNALGRRLFTKL 123
>sp|B1WQT8|RL13_CYAA5 50S ribosomal protein L13 OS=Cyanothece sp. (strain ATCC 51142)
GN=rplM PE=3 SV=1
Length = 151
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 89/111 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYV+DATD+ LGRLA +A +RGKN TYTP +D G +VI++NA+KVAV+G+K TQ
Sbjct: 13 DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGGMK ETF++LQ RIPERIIE AV+GMLPK + + ++
Sbjct: 73 KLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNALGRQLFTKL 123
>sp|B7KI14|RL13_CYAP7 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424)
GN=rplM PE=3 SV=1
Length = 151
Score = 150 bits (379), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 86/111 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
DK WYV+DA + LGRLAS IA+ +RGKN TYTP +D G +VIV+NAEKV V+GKK Q
Sbjct: 13 DKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+Y RHSGRPGGMK ETF++LQ R+PERI+E AV+GMLPK + + ++
Sbjct: 73 KVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPKNSLGRQLFTKL 123
>sp|B0C427|RL13_ACAM1 50S ribosomal protein L13 OS=Acaryochloris marina (strain MBIC
11017) GN=rplM PE=3 SV=1
Length = 151
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 83/101 (82%)
Query: 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+DK WYVVDA ++ LGRLA+ IA+ +RGKN TYTP ++ G +VIV+NAEKV V+G K
Sbjct: 12 ADKKWYVVDAENQRLGRLATQIAMILRGKNKPTYTPFMNTGDFVIVINAEKVTVTGNKGE 71
Query: 164 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
QK+YRRHSGRPGGMK ETF+ LQ RIPERIIE AV+GMLPK
Sbjct: 72 QKLYRRHSGRPGGMKTETFNHLQERIPERIIEKAVKGMLPK 112
>sp|P73294|RL13_SYNY3 50S ribosomal protein L13 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rplM PE=3 SV=1
Length = 151
Score = 150 bits (379), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 87/111 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D WYV+DA + LGRLA+ +A +RGKN T+TP +D G +VI++NAEK+ V+G+KR Q
Sbjct: 13 DHKWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGGMKEETF++LQ R+PERI+E AVRGMLPK + + ++
Sbjct: 73 KLYRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLPKNSLGRKLFTKL 123
>sp|Q318L0|RL13_PROM9 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9312) GN=rplM PE=3 SV=1
Length = 143
Score = 150 bits (379), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEK+ VSGKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKIEVSGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP
Sbjct: 73 KLYRRHSGRPGGMKTEKFESLQERIPERIIEQAVKGMLP 111
>sp|A2BTB2|RL13_PROMS 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
AS9601) GN=rplM PE=3 SV=1
Length = 143
Score = 150 bits (378), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN TYTP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTYTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP
Sbjct: 73 KLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLP 111
>sp|A3PF22|RL13_PROM0 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9301) GN=rplM PE=3 SV=1
Length = 143
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP
Sbjct: 73 KLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLP 111
>sp|A2BYR0|RL13_PROM5 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9515) GN=rplM PE=3 SV=1
Length = 143
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIASVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKTSQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP
Sbjct: 73 KLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLP 111
>sp|Q7UZW8|RL13_PROMP 50S ribosomal protein L13 OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rplM PE=3 SV=1
Length = 143
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRL++ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLSTEIAAVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP
Sbjct: 73 KLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLP 111
>sp|Q5N0T9|RL13_SYNP6 50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rplM PE=3 SV=1
Length = 151
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 90/125 (72%), Gaps = 3/125 (2%)
Query: 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
N T+ P ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+
Sbjct: 2 NKTYLPSQGA---IERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVI 58
Query: 151 NAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSL 210
NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK +
Sbjct: 59 NADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNALGRQ 118
Query: 211 ILNQI 215
+ ++
Sbjct: 119 LFTKL 123
>sp|Q31L33|RL13_SYNE7 50S ribosomal protein L13 OS=Synechococcus elongatus (strain PCC
7942) GN=rplM PE=3 SV=1
Length = 151
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 90/125 (72%), Gaps = 3/125 (2%)
Query: 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
N T+ P ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+
Sbjct: 2 NKTYLPSQGA---IERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVI 58
Query: 151 NAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSL 210
NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK +
Sbjct: 59 NADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNALGRQ 118
Query: 211 ILNQI 215
+ ++
Sbjct: 119 LFTKL 123
>sp|Q110D4|RL13_TRIEI 50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain
IMS101) GN=rplM PE=3 SV=1
Length = 151
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 85/110 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
K WYV+DA + LGRLA+ IA+ IRGKN TYTP +D G +VIVVNAEKV V+GKK +QK
Sbjct: 14 KKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKSSQK 73
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
+YRRHSGRPGGMK E F +LQ R+P+RIIE AV GMLPK + + N++
Sbjct: 74 LYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSLGRKLHNKL 123
>sp|Q3AW67|RL13_SYNS9 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9902)
GN=rplM PE=3 SV=2
Length = 150
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA ++ LGRLA+ +A +RGKN +TP +D G +V+VVNAEK+ VSGKK Q
Sbjct: 13 DRQWYVVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFESLQERIPERIVEKAIKGMLP 111
>sp|Q2JL71|RL13_SYNJB 50S ribosomal protein L13 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rplM PE=3 SV=1
Length = 151
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 82/101 (81%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WY+VDA ++ LGRLA+ +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+Y
Sbjct: 16 WYLVDAANQRLGRLAAAVATLLRGKHKPDFTPHLDTGDYVIVINAEKVVVTGKKRTQKLY 75
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVS 208
RRHSGRPGGMK ETF QLQ R+PER++E AV+GMLP R+
Sbjct: 76 RRHSGRPGGMKVETFAQLQARLPERVVEKAVKGMLPHTRLG 116
>sp|Q0ID31|RL13_SYNS3 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9311)
GN=rplM PE=3 SV=1
Length = 150
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 82/99 (82%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +VIVVNA+K+ VSGKK Q
Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVIVVNADKIRVSGKKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ R+PERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFEHLQERLPERIVEKAIKGMLP 111
>sp|A8G736|RL13_PROM2 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9215) GN=rplM PE=3 SV=1
Length = 143
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/99 (65%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA +K LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKNKTLGRLATEIATLLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK E F+ L+ RIPERIIE AV+GMLP
Sbjct: 73 KLYRRHSGRPGGMKIEKFESLKERIPERIIEQAVKGMLP 111
>sp|Q7U4H5|RL13_SYNPX 50S ribosomal protein L13 OS=Synechococcus sp. (strain WH8102)
GN=rplM PE=3 SV=1
Length = 150
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WY+VDA +K LGRLA+ +A +RGKN ++TP +D G +V+VVNAEK+ VSG K TQ
Sbjct: 13 ERQWYLVDAENKTLGRLATEVAAVLRGKNNPSFTPHLDTGDFVVVVNAEKIRVSGSKPTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKTETFEALQDRIPERIVEKAIKGMLP 111
>sp|Q2JUJ8|RL13_SYNJA 50S ribosomal protein L13 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rplM PE=3 SV=1
Length = 151
Score = 144 bits (363), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 81/101 (80%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WY+VDA ++ LGRLA +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+Y
Sbjct: 16 WYLVDAANQRLGRLAVVVAKLLRGKHKPNFTPHLDTGDYVIVINAEKVVVTGKKRTQKLY 75
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVS 208
RRHSGRPGGMK ETF QLQ R+PER+IE AV+GMLP R+
Sbjct: 76 RRHSGRPGGMKVETFAQLQARLPERVIEKAVKGMLPHTRLG 116
>sp|Q3AMQ6|RL13_SYNSC 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9605)
GN=rplM PE=3 SV=1
Length = 150
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/99 (62%), Positives = 80/99 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA ++ LGRLA+ +A +RGK ++TP +D G +V+VVNAEK+ VSG+K Q
Sbjct: 13 DRQWYVVDAENQTLGRLATEVAAVLRGKTNPSFTPHLDTGDFVVVVNAEKIKVSGRKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFEALQERIPERIVEKAIKGMLP 111
>sp|Q7V9Y8|RL13_PROMA 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rplM PE=3 SV=1
Length = 150
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WY+VDA ++ LGRLA+ +A +RGKN ++TP +D G +VI+VNAEK+ V+GKK Q
Sbjct: 13 NRQWYLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVIIVNAEKIKVTGKKGMQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFNSLQERIPERIVEKAIKGMLP 111
>sp|A5GIR9|RL13_SYNPW 50S ribosomal protein L13 OS=Synechococcus sp. (strain WH7803)
GN=rplM PE=3 SV=1
Length = 150
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 80/99 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +V+VVNA+K+ VSG K Q
Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVVVVNADKIRVSGNKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFTHLQERLPERIVEKAIKGMLP 111
>sp|Q46IT5|RL13_PROMT 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
NATL2A) GN=rplM PE=3 SV=1
Length = 150
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 83/111 (74%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK Q
Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP R+ + ++
Sbjct: 73 KLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKL 123
>sp|A2C4X4|RL13_PROM1 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
NATL1A) GN=rplM PE=3 SV=1
Length = 150
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 83/111 (74%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK Q
Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP R+ + ++
Sbjct: 73 KLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKL 123
>sp|A5GVY6|RL13_SYNR3 50S ribosomal protein L13 OS=Synechococcus sp. (strain RCC307)
GN=rplM PE=3 SV=1
Length = 150
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 79/99 (79%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDA ++ LGRLA+ +A +RGKN TYTP +D G +V+V+NA+KV V+G K +
Sbjct: 13 ERHWYVVDAENQCLGRLATEVASVLRGKNKPTYTPHLDTGDFVVVINADKVKVTGNKASD 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFAALQQRIPERIVEKAIKGMLP 111
>sp|P51292|RK13_PORPU 50S ribosomal protein L13, chloroplastic OS=Porphyra purpurea
GN=rpl13 PE=3 SV=1
Length = 142
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 88/112 (78%)
Query: 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+ ++WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ +V+VSG K T
Sbjct: 11 TSQSWYVIDAKNQKLGRMSTHISNILRGKNKPSYTPYLDTGDYVIVINSSEVSVSGNKTT 70
Query: 164 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
QK+YRRHSG+PGG+K ETF+QLQ R+P RI+E +V+GMLPKG + + ++
Sbjct: 71 QKLYRRHSGQPGGLKVETFEQLQTRLPNRIVEKSVKGMLPKGPLGRKLFTKL 122
>sp|Q7V521|RL13_PROMM 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9313) GN=rplM PE=3 SV=1
Length = 150
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 79/99 (79%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K Q
Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLP 111
>sp|A2CC54|RL13_PROM3 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9303) GN=rplM PE=3 SV=1
Length = 150
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 79/99 (79%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K Q
Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLP 111
>sp|Q1XDJ6|RK13_PORYE 50S ribosomal protein L13, chloroplastic OS=Porphyra yezoensis
GN=rpl13 PE=3 SV=1
Length = 142
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 83/108 (76%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ V+VSG K QK+Y
Sbjct: 15 WYVIDAKNQTLGRISTHISNILRGKNKPSYTPYLDTGDYVIVINSAHVSVSGNKTNQKLY 74
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
RRHSG+PGG+K ETFDQLQ R+P RIIE +V+GMLPKG + + ++
Sbjct: 75 RRHSGQPGGLKVETFDQLQTRLPNRIIEKSVKGMLPKGPLGRKLFTKL 122
>sp|A1K971|RL13_AZOSB 50S ribosomal protein L13 OS=Azoarcus sp. (strain BH72) GN=rplM
PE=3 SV=1
Length = 142
Score = 133 bits (335), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 80/114 (70%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ W+VVD TDK+LGRLA+ +A +RGK+ A YTP VD G Y++VVN +K+ V+G K K
Sbjct: 13 RDWFVVDGTDKVLGRLAAEVARRLRGKHKAIYTPHVDTGDYIVVVNVDKLRVTGNKALDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVC 219
Y RHSG PGG+ E F +LQ R PER++E AV+GMLPKG + +L ++ C
Sbjct: 73 KYYRHSGYPGGIYETNFTKLQQRFPERVLEKAVKGMLPKGPLGYAMLKKLKCYA 126
>sp|B4RXK9|RL13_ALTMD 50S ribosomal protein L13 OS=Alteromonas macleodii (strain DSM
17117 / Deep ecotype) GN=rplM PE=3 SV=1
Length = 142
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 80/110 (72%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDATDK LGRLAS IA+ +RGK+ YTP VD G Y+IV+NAEKVAV+G+K K
Sbjct: 13 RDWYVVDATDKTLGRLASEIALRLRGKHKPEYTPHVDTGDYIIVINAEKVAVTGRKAQDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
+Y HSG PGG+KE F++L PE ++E AV+GMLPKG + + ++
Sbjct: 73 MYYAHSGYPGGLKETNFEKLIAHKPEMVLEKAVKGMLPKGPLGRAMFRKM 122
>sp|A1JR94|RL13_YERE8 50S ribosomal protein L13 OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=rplM PE=3 SV=1
Length = 142
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 82/110 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K
Sbjct: 13 RDWYVVDANGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
IY RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG + + ++
Sbjct: 73 IYYRHTGHIGGIKQATFEEMIARSPERVIEIAVKGMLPKGPLGRAMYRKL 122
>sp|B4EXL9|RL13_PROMH 50S ribosomal protein L13 OS=Proteus mirabilis (strain HI4320)
GN=rplM PE=3 SV=1
Length = 142
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 82/110 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLA+ IA +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K
Sbjct: 13 RDWYVVDADGKTLGRLATEIARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGHKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
+Y RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG + + ++
Sbjct: 73 VYYRHTGHVGGIKQATFEEMIARSPERVIEIAVKGMLPKGPLGRAMYRKL 122
>sp|Q5P7T7|RL13_AROAE 50S ribosomal protein L13 OS=Aromatoleum aromaticum (strain EbN1)
GN=rplM PE=3 SV=1
Length = 142
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 81/114 (71%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ W+VVDA+DK+LGRLA+ +A +RGK+ A YTP VD G +++VVN EK+ V+G K K
Sbjct: 13 RDWFVVDASDKVLGRLAAEVARRLRGKHKAIYTPHVDTGDFIVVVNVEKLRVTGNKALDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVC 219
Y RH+G PGG+ E F +LQ R PER++E AV+GMLPKG + +L ++ C
Sbjct: 73 KYYRHTGYPGGIYETNFTKLQQRFPERVLEKAVKGMLPKGPLGYAMLKKLKCYA 126
>sp|Q2S9X2|RL13_HAHCH 50S ribosomal protein L13 OS=Hahella chejuensis (strain KCTC 2396)
GN=rplM PE=3 SV=1
Length = 142
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 81/110 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYV+DATDK LGRL++ IA +RGK+ A YTP VD G Y++VVNAEKV V+G K K
Sbjct: 13 RDWYVIDATDKTLGRLSTEIARRLRGKHKAEYTPHVDTGDYIVVVNAEKVRVTGNKAQDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
+Y RH+G PGG+KE +FD+L PER+IE AV+GM+P+ + +L ++
Sbjct: 73 MYYRHTGYPGGLKEMSFDKLIQHAPERVIETAVKGMMPRNPLGRAMLKKL 122
>sp|A8AQC1|RL13_CITK8 50S ribosomal protein L13 OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=rplM PE=3 SV=1
Length = 142
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 83/110 (75%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDAT K LGRLA+ +A+ +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K
Sbjct: 13 RDWYVVDATGKTLGRLATELALRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG + + ++
Sbjct: 73 VYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKL 122
>sp|C1DDC6|RL13_LARHH 50S ribosomal protein L13 OS=Laribacter hongkongensis (strain
HLHK9) GN=rplM PE=3 SV=1
Length = 142
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 81/110 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ W+VVDATDK+LGRLA+ IA +RGK+ YTP VD G Y++VVNA+K+ V+G K K
Sbjct: 13 RDWFVVDATDKVLGRLAAEIARRLRGKHKPEYTPHVDTGDYIVVVNADKLRVTGNKALDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
Y RHSG PGG+ E TF +LQ+ PER++E AV+GMLPKG + ++ ++
Sbjct: 73 KYYRHSGYPGGIYERTFTELQNEFPERVLEKAVKGMLPKGPLGYAMIKKL 122
>sp|A8GK03|RL13_SERP5 50S ribosomal protein L13 OS=Serratia proteamaculans (strain 568)
GN=rplM PE=3 SV=1
Length = 142
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 82/110 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K
Sbjct: 13 RDWYVVDADGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
+Y RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG + + ++
Sbjct: 73 VYYRHTGYVGGIKQATFEEMIARNPERVIEIAVKGMLPKGPLGRAMFRKL 122
>sp|C4ZI85|RL13_EUBR3 50S ribosomal protein L13 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rplM PE=3 SV=1
Length = 142
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 80/115 (69%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA K LGRLAS +A +RGKN A +TP +D G YVIVVNA+KV V+GKK Q
Sbjct: 12 DRKWYVVDAEGKTLGRLASEVAKVLRGKNKAIFTPHIDTGDYVIVVNADKVKVTGKKLDQ 71
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVC 219
KIY HS GGMKE T ++ ++ PER+IE+AV+GMLPKG + + ++
Sbjct: 72 KIYYHHSDYIGGMKETTLREMMNKHPERVIEYAVKGMLPKGPLGRQMYTKLFVYA 126
>sp|A7MJB9|RL13_CROS8 50S ribosomal protein L13 OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=rplM PE=3 SV=1
Length = 142
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 82/110 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR+ K
Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRSDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
+Y H+G GG+KE TF+++ R PER+IE AV+GMLPKG + + ++
Sbjct: 73 MYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKL 122
>sp|B2VGX3|RL13_ERWT9 50S ribosomal protein L13 OS=Erwinia tasmaniensis (strain DSM 17950
/ Et1/99) GN=rplM PE=3 SV=1
Length = 142
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 82/110 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR+ K
Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRSDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQI 215
IY H+G GG+K+ TF+++ R PER+IE AV+GMLPKG + + ++
Sbjct: 73 IYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMYRKL 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.130 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,191,125
Number of Sequences: 539616
Number of extensions: 3301237
Number of successful extensions: 13477
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 12179
Number of HSP's gapped (non-prelim): 1139
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)