Query 026665
Match_columns 235
No_of_seqs 142 out of 1069
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 11:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00159 rpl13 ribosomal prote 100.0 1.6E-57 3.5E-62 378.4 13.2 134 90-226 1-134 (143)
2 PRK09216 rplM 50S ribosomal pr 100.0 1.9E-56 4.2E-61 372.1 12.2 136 91-229 1-136 (144)
3 COG0102 RplM Ribosomal protein 100.0 2.4E-55 5.3E-60 366.9 12.7 131 91-224 1-132 (148)
4 TIGR01066 rplM_bact ribosomal 100.0 2.8E-55 6E-60 363.6 12.3 126 104-229 9-134 (140)
5 cd00392 Ribosomal_L13 Ribosoma 100.0 1E-53 2.3E-58 343.2 11.4 114 108-221 1-114 (114)
6 PLN00205 ribisomal protein L13 100.0 5.2E-52 1.1E-56 359.0 13.4 129 104-232 13-141 (191)
7 PF00572 Ribosomal_L13: Riboso 100.0 1E-52 2.2E-57 343.1 8.4 126 108-233 1-126 (128)
8 KOG3203 Mitochondrial/chloropl 100.0 2.6E-51 5.6E-56 344.9 7.5 126 97-222 12-137 (165)
9 TIGR01077 L13_A_E ribosomal pr 100.0 8.4E-39 1.8E-43 265.7 9.7 113 109-233 1-114 (142)
10 PTZ00068 60S ribosomal protein 100.0 4.3E-37 9.3E-42 268.2 9.9 116 106-233 3-119 (202)
11 PRK06394 rpl13p 50S ribosomal 100.0 2.3E-36 5E-41 252.2 11.7 115 107-233 3-119 (146)
12 KOG3204 60S ribosomal protein 99.6 2E-16 4.3E-21 137.9 5.0 100 106-225 5-106 (197)
13 PRK05461 apaG CO2+/MG2+ efflux 54.2 16 0.00034 30.3 3.4 49 56-117 5-61 (127)
14 PF12396 DUF3659: Protein of u 48.9 5.3 0.00012 29.6 -0.2 29 104-132 9-37 (64)
15 PRK15393 NUDIX hydrolase YfcD; 47.1 18 0.00039 30.6 2.7 44 105-157 9-53 (180)
16 COG2967 ApaG Uncharacterized p 46.7 11 0.00025 31.6 1.4 15 103-117 46-60 (126)
17 PLN02399 phospholipid hydroper 42.3 24 0.00052 31.8 2.9 31 21-51 26-58 (236)
18 cd02885 IPP_Isomerase Isopente 36.6 1.1E+02 0.0023 25.2 5.7 41 106-154 2-42 (165)
19 PRK03759 isopentenyl-diphospha 35.3 53 0.0012 27.6 3.8 44 106-157 6-50 (184)
20 PF00436 SSB: Single-strand bi 33.0 43 0.00094 24.8 2.6 31 104-150 45-75 (104)
21 PF01473 CW_binding_1: Putativ 30.8 28 0.00061 19.4 1.0 16 101-116 3-18 (19)
22 PRK05853 hypothetical protein; 30.6 88 0.0019 26.9 4.4 29 106-150 42-70 (161)
23 cd04496 SSB_OBF SSB_OBF: A sub 30.1 53 0.0012 23.9 2.7 31 104-150 41-71 (100)
24 TIGR02150 IPP_isom_1 isopenten 29.4 40 0.00088 27.6 2.1 41 109-157 2-43 (158)
25 KOG3974 Predicted sugar kinase 27.4 13 0.00029 35.1 -1.2 34 106-141 132-165 (306)
26 COG0629 Ssb Single-stranded DN 26.8 58 0.0012 27.4 2.6 29 106-150 50-78 (167)
27 PRK07274 single-stranded DNA-b 25.1 1.2E+02 0.0025 24.8 4.0 29 106-150 46-74 (131)
28 PRK07772 single-stranded DNA-b 23.1 1.4E+02 0.0031 26.2 4.5 29 106-150 52-80 (186)
29 PRK06752 single-stranded DNA-b 22.6 77 0.0017 24.9 2.5 29 106-150 46-74 (112)
30 PRK09010 single-stranded DNA-b 22.5 92 0.002 27.2 3.1 29 106-150 53-81 (177)
31 PF04379 DUF525: Protein of un 21.6 55 0.0012 25.5 1.4 14 104-117 31-44 (90)
32 PRK06863 single-stranded DNA-b 21.6 99 0.0021 26.8 3.1 29 106-150 51-79 (168)
33 PF04989 CmcI: Cephalosporin h 21.5 69 0.0015 28.7 2.2 32 105-149 110-145 (206)
34 TIGR00292 thiazole biosynthesi 21.4 30 0.00064 31.0 -0.1 25 106-131 158-182 (254)
35 PRK05733 single-stranded DNA-b 20.6 1.3E+02 0.0029 26.1 3.7 28 106-149 52-79 (172)
36 COG0386 BtuE Glutathione perox 20.2 30 0.00066 30.2 -0.3 47 78-124 93-146 (162)
37 KOG0023 Alcohol dehydrogenase, 20.1 1.4E+02 0.0031 29.2 4.1 34 105-153 181-214 (360)
38 PLN02372 violaxanthin de-epoxi 20.1 62 0.0013 32.4 1.7 35 74-115 259-293 (455)
No 1
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=100.00 E-value=1.6e-57 Score=378.35 Aligned_cols=134 Identities=50% Similarity=0.859 Sum_probs=129.7
Q ss_pred cceeecccCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeee
Q 026665 90 WNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR 169 (235)
Q Consensus 90 ~~kT~~~k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~ 169 (235)
||+||++++++ ++|+||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||.+|.|++
T Consensus 1 ~~~t~~~~~~~---~~r~W~viDA~~~~lGRlAs~iA~~L~GKhKp~ytP~~d~Gd~VVViNa~kv~~TG~K~~~K~y~~ 77 (143)
T CHL00159 1 MNKTFIPSKDY---KNRKWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTGNKTSQKFYVR 77 (143)
T ss_pred CCccccCCchh---cCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEecceeEEeCchhhheEEEe
Confidence 56899999888 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCcccchhHhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchhcc
Q 026665 170 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTSVL 226 (235)
Q Consensus 170 HtgyPGGlk~~t~~~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~~~ 226 (235)
|||||||+|+++++++++++|++||++||+||||||++||++|+|||||+|.+...-
T Consensus 78 htg~pGg~k~~~~~~~~~r~P~~il~~aV~gMLPkn~lgr~~~~rLkvy~G~~hph~ 134 (143)
T CHL00159 78 HSGRPGGLKIETFEELQNRLPNRIIEKAVKGMLPKGPLGRKLFTKLKVYKGESHPHV 134 (143)
T ss_pred cCCCCCCcccccHHHHhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999876543
No 2
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=100.00 E-value=1.9e-56 Score=372.08 Aligned_cols=136 Identities=47% Similarity=0.771 Sum_probs=130.7
Q ss_pred ceeecccCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeec
Q 026665 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (235)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (235)
|+|+++++++ ++++||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||++|.|++|
T Consensus 1 m~t~~~~~~~---~~~~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~h 77 (144)
T PRK09216 1 MKTFSAKPAE---VERKWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKVKLTGKKLTDKIYYRH 77 (144)
T ss_pred CCcccCChhh---cCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCCCCCCEEEEEeCceeEEcCchHhheeeEEe
Confidence 3689999888 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCcccchhHhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchhcccee
Q 026665 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTSVLSSF 229 (235)
Q Consensus 171 tgyPGGlk~~t~~~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~~~~~~ 229 (235)
||||||+++++++++++|+|++||++|||||||+|++||++|+||+||+|.+..+...+
T Consensus 78 tg~pGglk~~~~~~~~~r~P~~il~~aVrgMLPkn~lgr~~~~rLkvy~G~~hp~~~q~ 136 (144)
T PRK09216 78 SGYPGGLKEITFGELLAKKPERVIEKAVKGMLPKNPLGRAMFKKLKVYAGAEHPHAAQQ 136 (144)
T ss_pred cccCCCCEEecHHHHhhhCHHHHHHHHHHhcCCCCccHHHHHhCcEEeCCCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999988766544
No 3
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-55 Score=366.88 Aligned_cols=131 Identities=49% Similarity=0.770 Sum_probs=126.3
Q ss_pred ceeecccCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeec
Q 026665 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (235)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (235)
++|++++.++ .+++|+||||+|++||||||.||++|+|||||+||||+||||+|||||||||++||+|..+|.||+|
T Consensus 1 ~~t~~~k~~~---~~r~w~vIDA~g~vLGRLAs~VA~~Lrgkhkp~ytP~~d~Gd~ViVINAeKv~iTG~K~~~k~yy~h 77 (148)
T COG0102 1 MKTFTAKPSE---VERKWYVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKVVITGKKLTDKKYYRH 77 (148)
T ss_pred CceeccCccc---ccceEEEEeCCCCChHHHHHHHHHHHhcCCCCCcCcCcCCCCEEEEEeceeeEEecccccceEEEEe
Confidence 4688999888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCcccchhHhhh-cChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchh
Q 026665 171 SGRPGGMKEETFDQLQH-RIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTS 224 (235)
Q Consensus 171 tgyPGGlk~~t~~~l~~-r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~ 224 (235)
++||||+++.+++++.. |.|++||++||+||||||++||++|+|||||+|.|-.
T Consensus 78 s~~~gglk~~t~~~~~~~r~P~ri~~~AVrGMLPk~~lGr~~~krLkVy~G~~h~ 132 (148)
T COG0102 78 SGYPGGLKNPTRGGPLAPRRPERILERAVRGMLPKNPLGRAALKRLKVYAGIPHP 132 (148)
T ss_pred eccCCcccccccccccccCCHHHHHHHHHhccCCCChhHHHHHhCceEecCCCCc
Confidence 99999999999977776 9999999999999999999999999999999999865
No 4
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=100.00 E-value=2.8e-55 Score=363.61 Aligned_cols=126 Identities=50% Similarity=0.823 Sum_probs=122.9
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchh
Q 026665 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFD 183 (235)
Q Consensus 104 ~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~ 183 (235)
++++||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||++|.|++|||||||+++++++
T Consensus 9 ~~r~W~viDA~~~~lGRLAs~iAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pgg~k~~~~~ 88 (140)
T TIGR01066 9 KKRKWYVVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKVRLTGKKLEQKVYYRHSGYPGGLKSRTFE 88 (140)
T ss_pred hcccEEEEeCCCCchHHHHHHHHHHHhccCCCccCCCccCCCEEEEEeccEEEEeCchhhceeeEEEcccCCccccccHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchhcccee
Q 026665 184 QLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTSVLSSF 229 (235)
Q Consensus 184 ~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~~~~~~ 229 (235)
++++++|++||++||+||||||.+||++|+||+||+|.|..+-..+
T Consensus 89 ~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkvy~G~~hp~~~q~ 134 (140)
T TIGR01066 89 EMIARKPERVLEHAVKGMLPKNRLGRKLFKKLKVYAGSEHPHEAQK 134 (140)
T ss_pred HhhhcCHHHHHHHHHHhcCCCCccHHHHHhCeEEeCCCCCChhhcC
Confidence 9999999999999999999999999999999999999998876554
No 5
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=100.00 E-value=1e-53 Score=343.15 Aligned_cols=114 Identities=50% Similarity=0.829 Sum_probs=112.9
Q ss_pred EEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchhHhhh
Q 026665 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 187 (235)
Q Consensus 108 W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~~l~~ 187 (235)
|+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||++|.|++|++||||+++++++++++
T Consensus 1 w~viDA~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i~~tG~k~~~k~y~~~~~~~g~~~~~~~~~~~~ 80 (114)
T cd00392 1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYYRHTGYPGGLKNPTAGPLHP 80 (114)
T ss_pred CEEEeCCCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEEEEeCchhhccceEEeccCCCCCccCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHhCcCCCChhHHHHhhcCeeeCcc
Q 026665 188 RIPERIIEHAVRGMLPKGRVSSLILNQILCVCMC 221 (235)
Q Consensus 188 r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~ 221 (235)
++|++||++||+||||||++|+++|+||+||+|.
T Consensus 81 ~~P~~il~~aV~gMLPkn~~g~~~l~rLkvy~g~ 114 (114)
T cd00392 81 RAPERILKRAVRGMLPKNKLGRAALKRLKVYEGA 114 (114)
T ss_pred hCHHHHHHHHHHhcCCCChhHHHHHhCcEEeCCC
Confidence 9999999999999999999999999999999984
No 6
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=100.00 E-value=5.2e-52 Score=358.96 Aligned_cols=129 Identities=33% Similarity=0.494 Sum_probs=123.9
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchh
Q 026665 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFD 183 (235)
Q Consensus 104 ~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~ 183 (235)
..++||||||+||+||||||+||++|+|||||+|||++||||+|||||||+|+|||+||.+|.|++|||||||+++++++
T Consensus 13 ~~r~W~VIDA~~~iLGRLAS~IAk~L~GKhKP~ytP~~D~GD~VVVINAekI~lTG~K~~~K~Y~~htgypGglk~~~~~ 92 (191)
T PLN00205 13 EGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDISVTGRKLTDKFYRWHTGYIGHLKERSLK 92 (191)
T ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccEEEEeCChhhcceEEEecCCCCCcccccHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchhccceeeEE
Q 026665 184 QLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTSVLSSFFII 232 (235)
Q Consensus 184 ~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~~~~~~~~~ 232 (235)
++++++|++||++||+||||+|.+|+.+|+||+||+|.|..+-..+.+.
T Consensus 93 ~~~~r~P~~Il~kAVrGMLPkn~lr~~~~krLkVY~G~~hp~~~q~p~~ 141 (191)
T PLN00205 93 DQMAKDPTEVIRKAVLRMLPRNRLRDDRDRKLRIFAGSEHPFGDKPLEP 141 (191)
T ss_pred HHhccCHHHHHHHHHHhcCCCCchHHHHHhCCEEECCCCCChhccCCeE
Confidence 9999999999999999999999999999999999999999887655543
No 7
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=100.00 E-value=1e-52 Score=343.06 Aligned_cols=126 Identities=44% Similarity=0.712 Sum_probs=121.7
Q ss_pred EEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchhHhhh
Q 026665 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH 187 (235)
Q Consensus 108 W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~~l~~ 187 (235)
|+||||+||+|||||+.||++|+|||||+|||+.||||+|||||||+|++||+||.+|.|++|+|||||+++.+++++++
T Consensus 1 W~viDA~~~~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViNae~i~~tG~k~~~k~y~~h~~~~g~~~~~~~~~~~~ 80 (128)
T PF00572_consen 1 WYVIDAKGQILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVINAEKIVLTGKKWRQKVYYRHTGYPGGLKNPTAKGLHE 80 (128)
T ss_dssp EEEEETTTBBHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEECGGGBEESSHHHHHHHHHHEHSSSTSCEEEECHHHHC
T ss_pred CEEEeCCCCchHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEcCeeeEecCCeecceEEEeecccchhhcccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchhccceeeEEE
Q 026665 188 RIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTSVLSSFFIIV 233 (235)
Q Consensus 188 r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~~~~~~~~~~ 233 (235)
++|++||++||+||||+|.+|+++|+||+||+|.|.++-..+.+.+
T Consensus 81 ~~P~~i~~~aVrgMLP~n~~g~~~l~rL~vy~g~~hp~~~~~~~~~ 126 (128)
T PF00572_consen 81 KDPSRILKRAVRGMLPKNKLGREALKRLKVYPGEPHPHAAQKPVVL 126 (128)
T ss_dssp SSHHHHHHHHHHTTSTTSHHHHHHHTTEEEESSSSCSTTSSSCBEE
T ss_pred cCHHHHHHHHHHHHCCCChhhhHHhhceEEECCCCCChhccCCEeC
Confidence 9999999999999999999999999999999999999766665543
No 8
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-51 Score=344.90 Aligned_cols=126 Identities=44% Similarity=0.632 Sum_probs=122.4
Q ss_pred cCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCC
Q 026665 97 KAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGG 176 (235)
Q Consensus 97 k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGG 176 (235)
+..+|..++|.||+|||++|+|||||++||..|+|||||+|||..||||+|||+||++|.|||+||++|.|++|+|||||
T Consensus 12 ~g~~~~afaRvW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~Ia~sG~K~~qk~Y~~HsGyPG~ 91 (165)
T KOG3203|consen 12 RGNQWLAFARVWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKIAFSGKKWEQKIYRSHSGYPGG 91 (165)
T ss_pred cchHHHHHhhhheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhheeccchhhhhhhhhcCCCCCc
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhHhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccc
Q 026665 177 MKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCL 222 (235)
Q Consensus 177 lk~~t~~~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p 222 (235)
++++++++++.|+|++|+++||+||||+|.+||.+|+||+||.|.-
T Consensus 92 lk~~~~~q~~~rdp~~Iv~~AV~gMLPkN~Lrr~~~~rL~lf~g~e 137 (165)
T KOG3203|consen 92 LKQTTADQLADRDPCRIVRLAVYGMLPKNLLRRRRMQRLHLFPGEE 137 (165)
T ss_pred hhhhHHHHHhhhCHHHHHHHHHHhhCccchHHHHHhheeeccCCcc
Confidence 9999999999999999999999999999999999999999999863
No 9
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=100.00 E-value=8.4e-39 Score=265.68 Aligned_cols=113 Identities=30% Similarity=0.390 Sum_probs=104.4
Q ss_pred EEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchhHhhhc
Q 026665 109 YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHR 188 (235)
Q Consensus 109 ~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~~l~~r 188 (235)
+||||+||+||||||.||++|+ |||+|||||||+|++||+|+++|.||+|+.++|+.+..++++++++
T Consensus 1 ivIDA~~~vlGRLAs~IA~~L~------------~Gd~VvViNaeki~~TG~k~~~k~~y~~~~~~g~~~~~~~~~~~~r 68 (142)
T TIGR01077 1 TVIDGSGHILGRLASVVAKQLL------------NGEKVVVVNAEKIVISGNFYRNKLKYKEFLRKRTLTNPRRGPFFPR 68 (142)
T ss_pred CEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEechHheecCchhhheeEEEEECCCCCcccCCHHHhhhc
Confidence 5899999999999999999996 9999999999999999999999999999976666666689999999
Q ss_pred ChhHHHHHHHhCcCCCC-hhHHHHhhcCeeeCccchhccceeeEEE
Q 026665 189 IPERIIEHAVRGMLPKG-RVSSLILNQILCVCMCLTSVLSSFFIIV 233 (235)
Q Consensus 189 ~P~~IlkrAVrGMLPkn-~lGr~~lkrLkVYa~~p~~~~~~~~~~~ 233 (235)
+|++||++|||||||+| .+|+++|+|||||+|.|..+-..+..++
T Consensus 69 ~P~~il~~aVrGMLPk~~~~Gr~~~krLkvy~G~~h~~~~qk~~~~ 114 (142)
T TIGR01077 69 APSRIFRRTVRGMLPHKTARGRAALRRLKVYVGIPPELDKKKRVVV 114 (142)
T ss_pred CHHHHHHHHHHHhCCCCChhHHHHHhCcEEecCCCCCccccCcccc
Confidence 99999999999999996 8999999999999999999887766543
No 10
>PTZ00068 60S ribosomal protein L13a; Provisional
Probab=100.00 E-value=4.3e-37 Score=268.19 Aligned_cols=116 Identities=25% Similarity=0.336 Sum_probs=104.6
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchhHh
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQL 185 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~~l 185 (235)
.+|+||||+||+||||||.||+.|+ +||+|||||||+|.+||+|+++|.||+|.-+.+...+...+++
T Consensus 3 ~~w~vIDA~g~vLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iTG~k~~~K~~y~~~lk~~~~~nP~~g~~ 70 (202)
T PTZ00068 3 KKVIVIDCKGHLLGRLASVVAKELL------------LGQKIVVVRCEDLNISGSLFRNKVKYEEFLRKRMNTNPRRGPF 70 (202)
T ss_pred CceEEEECCCCcHHHHHHHHHHHHh------------CCCEEEEEecceeEeecchhhheeeeEeeeEeeccCCCCcchh
Confidence 3799999999999999999999998 9999999999999999999999999999433333334446899
Q ss_pred hhcChhHHHHHHHhCcCCC-ChhHHHHhhcCeeeCccchhccceeeEEE
Q 026665 186 QHRIPERIIEHAVRGMLPK-GRVSSLILNQILCVCMCLTSVLSSFFIIV 233 (235)
Q Consensus 186 ~~r~P~~IlkrAVrGMLPk-n~lGr~~lkrLkVYa~~p~~~~~~~~~~~ 233 (235)
|+|.|++||++|||||||| |++|+++|+||+||+|.|..+-..+.++|
T Consensus 71 ~~r~P~~Il~raVrGMLPkk~~~Gr~alkrLkVy~G~php~~~~k~~vv 119 (202)
T PTZ00068 71 HHRAPSDIFWRTVRGMLPHKTKRGAAALKRLKVFEGVPAPYDKVKRVVI 119 (202)
T ss_pred cccCHHHHHHHHHhhhCCCCChhHHHHHhCCEEecCCCCchhccCcccc
Confidence 9999999999999999997 89999999999999999999888877765
No 11
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=100.00 E-value=2.3e-36 Score=252.20 Aligned_cols=115 Identities=28% Similarity=0.384 Sum_probs=100.4
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCccc-chhHh
Q 026665 107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEE-TFDQL 185 (235)
Q Consensus 107 ~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~-t~~~l 185 (235)
+-+||||+||+|||||+.||++|+ +||+||||||++|++||+|+.++.||+|...+++..+. +++++
T Consensus 3 ~~~viDA~~~vlGRLAs~IA~~L~------------~Gd~VVViNa~kv~~tG~K~~~~~~y~~~~~~k~~~np~~~~~~ 70 (146)
T PRK06394 3 AMVVIDAEGQILGRLASYVAKRLL------------EGEEVVIVNAEKAVITGNRERVIEKYKQRRERGSHYNPYRNGPK 70 (146)
T ss_pred ccEEEECCCCchHHHHHHHHHHHh------------CCCEEEEEechheEecCchhhheeeEeCCCCCcccCCCCChHHh
Confidence 468999999999999999999999 59999999999999999998875555554444444332 78999
Q ss_pred hhcChhHHHHHHHhCcCC-CChhHHHHhhcCeeeCccchhccceeeEEE
Q 026665 186 QHRIPERIIEHAVRGMLP-KGRVSSLILNQILCVCMCLTSVLSSFFIIV 233 (235)
Q Consensus 186 ~~r~P~~IlkrAVrGMLP-kn~lGr~~lkrLkVYa~~p~~~~~~~~~~~ 233 (235)
++++|++||++||+|||| ||++|+++|+||+||+|.|..+-..+.+++
T Consensus 71 ~~r~P~~il~~AV~gMLP~kn~~gr~~~~rLkvy~G~~h~~~~qkp~~~ 119 (146)
T PRK06394 71 YPRRPDRIFKRTIRGMLPYKKPRGREALKRLKVYVGVPKELEGKEFEVI 119 (146)
T ss_pred hhcCHHHHHHHHHHhcCCCCChhHHHHHhCcEEecCCCCCcccCCCEEe
Confidence 999999999999999999 799999999999999999999887776654
No 12
>KOG3204 consensus 60S ribosomal protein L13a [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2e-16 Score=137.93 Aligned_cols=100 Identities=29% Similarity=0.493 Sum_probs=89.2
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeecc-CCcCCCcccchhH
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHS-GRPGGMKEETFDQ 184 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~Ht-gyPGGlk~~t~~~ 184 (235)
.+-.+||+.||++||||+.+|+.|+ .|..|||+.||.|.++|+-+++|.|-++- ++ . ++
T Consensus 5 ~~~~vidg~~hllGrlAa~vaK~ll------------~g~kvvvvr~E~i~isg~f~r~k~~lrk~~~~-------n-g~ 64 (197)
T KOG3204|consen 5 VKLVVIDGRGHLLGRLAAIVAKQLL------------LGRKVVVVRCEEINISGNFYRNKLFLRKRLNR-------N-GP 64 (197)
T ss_pred EEEeeccchhhhhhhHHHHHHHHHh------------cCCeEEEEEEeEEEEecceecchHHHhhhhcc-------c-Cc
Confidence 4678999999999999999999998 89999999999999999999888665542 21 1 67
Q ss_pred hhhcChhHHHHHHHhCcCCC-ChhHHHHhhcCeeeCccchhc
Q 026665 185 LQHRIPERIIEHAVRGMLPK-GRVSSLILNQILCVCMCLTSV 225 (235)
Q Consensus 185 l~~r~P~~IlkrAVrGMLPk-n~lGr~~lkrLkVYa~~p~~~ 225 (235)
+|.+-|.+|++++|+||+|+ .++|+.+++||++|.|+|-..
T Consensus 65 ~hfr~ps~i~~~~vrgm~~~kt~rg~aal~~l~~~eGip~~~ 106 (197)
T KOG3204|consen 65 FHFRAPSRILQKAVRGMYPHKTKRGRAALERLRVFEGIPPPY 106 (197)
T ss_pred chhhhHHHHHHHhhccccccCCCccHHHHHHHHHhCCCCChh
Confidence 89999999999999999997 689999999999999999654
No 13
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=54.21 E-value=16 Score=30.29 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=29.8
Q ss_pred cccceEEEeccccccccC-----Ccchhhh---hhhccCCCccceeecccCCCcccccceEEEEeCCCCC
Q 026665 56 TKRSFKVRCCQNLSLVPD-----NQRWMFE---QSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKI 117 (235)
Q Consensus 56 ~~~~~~v~c~~~~~~v~~-----~~r~m~~---~~e~~g~d~~~kT~~~k~~~~~~~~r~W~vIDA~gqi 117 (235)
.+.+++|++.. .++|+ +.|++|. .+|-.|+. ......|.|.|.|++|++
T Consensus 5 ~t~gI~V~V~~--~y~~e~S~p~~~~y~f~Y~ItI~N~~~~-----------~vQL~~R~W~I~d~~g~~ 61 (127)
T PRK05461 5 VTYGIEVSVQP--RYLEEQSDPEEGRYVFAYTITIENLGRV-----------PVQLLSRHWLITDANGRV 61 (127)
T ss_pred ccCCEEEEEEE--EECcccCCCcCCEEEEEEEEEEEECCCC-----------CEEEEeeeEEEEECCCCE
Confidence 36788888876 46664 4555553 23322221 112356899999998874
No 14
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=48.89 E-value=5.3 Score=29.61 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=25.3
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcC
Q 026665 104 SDKTWYVVDATDKILGRLASTIAIHIRGK 132 (235)
Q Consensus 104 ~~r~W~vIDA~gqiLGRLAS~IAk~L~GK 132 (235)
.++.=.|+|.+|+++|||..--++.|.|+
T Consensus 9 Vnk~G~V~d~~G~~vG~vveGd~k~L~G~ 37 (64)
T PF12396_consen 9 VNKDGNVVDDDGNVVGRVVEGDPKKLVGK 37 (64)
T ss_pred ECCCCeEECCCCCEEEEEecCCHHHhcCC
Confidence 45566799999999999999999999987
No 15
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=47.09 E-value=18 Score=30.59 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=29.3
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeee
Q 026665 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV 157 (235)
Q Consensus 105 ~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAe-kI~v 157 (235)
..-|.|+|..|+++|+.....+.. .|. ++ .+..|+|+|.+ +|.+
T Consensus 9 ~e~~~~~d~~~~~~g~~~~~~~~~-~~~----~h----~~~~v~v~~~~g~iLL 53 (180)
T PRK15393 9 TEWVDIVNENNEVIAQASREQMRA-QCL----RH----RATYIVVHDGMGKILV 53 (180)
T ss_pred ceEEEEECCCCCEeeEEEHHHHhh-CCC----ce----EEEEEEEECCCCeEEE
Confidence 356999999999999985555543 222 12 35578888874 4444
No 16
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=46.74 E-value=11 Score=31.59 Aligned_cols=15 Identities=13% Similarity=0.583 Sum_probs=12.9
Q ss_pred cccceEEEEeCCCCC
Q 026665 103 HSDKTWYVVDATDKI 117 (235)
Q Consensus 103 ~~~r~W~vIDA~gqi 117 (235)
...|.|+|=||.|++
T Consensus 46 LlsR~W~ITd~~g~v 60 (126)
T COG2967 46 LLSRYWLITDGNGRV 60 (126)
T ss_pred eeeeEEEEecCCCcE
Confidence 367999999999986
No 17
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=42.30 E-value=24 Score=31.83 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=20.8
Q ss_pred CCCcccccccccccccccCcc--ccccccCCCC
Q 026665 21 SSSFKTLNTGTTISSSTTPFL--GFSVASAKST 51 (235)
Q Consensus 21 ~~s~~~~~~~~~~~~~~~~f~--g~~~~~~~~s 51 (235)
+++|.--.++.++-+++|+|+ ||++..+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (236)
T PLN02399 26 SMAFLVPSLKSSTGISKSAFLSNGFSLKSPNSP 58 (236)
T ss_pred ccccccceeeeccccccchhhccccccccCCCc
Confidence 344443344477788899998 8888877543
No 18
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=36.60 E-value=1.1e+02 Score=25.16 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=25.9
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecce
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEK 154 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAek 154 (235)
..|-|+|..|++.|+-.-..+....+- |+ ..-.|+|+|.+.
T Consensus 2 e~~~~~d~~~~~~g~~~r~~~~~~~~~----~~----~~v~v~i~~~~~ 42 (165)
T cd02885 2 ELVILVDEDDNPIGTAEKLEAHLKGTL----LH----RAFSVFLFNSKG 42 (165)
T ss_pred cEEEEECCCCCCccccCHHHHhhcCCc----ce----eEEEEEEEcCCC
Confidence 468999999999997555555443322 01 122467788753
No 19
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=35.29 E-value=53 Score=27.60 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=30.7
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeee
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV 157 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAe-kI~v 157 (235)
..|.|+|+.|..+|+.....+....|. ||+. -.|+|+|.+ +|.+
T Consensus 6 E~~~~vd~~~~~~g~~~r~~~~~~~~~----~h~a----v~v~i~~~~g~vLL 50 (184)
T PRK03759 6 ELVVLLDEQGVPTGTAEKAAAHTADTP----LHLA----FSCYLFDADGRLLV 50 (184)
T ss_pred eeEEEECCCCCCcccccHHHHHhcCCC----eeeE----EEEEEEcCCCeEEE
Confidence 579999999999999888877644443 3332 247777754 5555
No 20
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=32.98 E-value=43 Score=24.77 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=21.1
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 104 ~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
....|+=|-+ -|++|..++.+|. .||.|.|.
T Consensus 45 ~~~~~~~v~~----~g~~A~~~~~~l~------------kG~~V~V~ 75 (104)
T PF00436_consen 45 EKTDWINVVA----WGKLAENVAEYLK------------KGDRVYVE 75 (104)
T ss_dssp EEEEEEEEEE----EHHHHHHHHHH--------------TT-EEEEE
T ss_pred cceEEEEEEe----eeecccccceEEc------------CCCEEEEE
Confidence 3446777655 4889999999987 89987764
No 21
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=30.78 E-value=28 Score=19.38 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=12.2
Q ss_pred cccccceEEEEeCCCC
Q 026665 101 HRHSDKTWYVVDATDK 116 (235)
Q Consensus 101 ~~~~~r~W~vIDA~gq 116 (235)
|+....+||.+|+.|.
T Consensus 3 W~~~~~~wYy~~~~G~ 18 (19)
T PF01473_consen 3 WVQDNGNWYYFDSDGY 18 (19)
T ss_dssp EEEETTEEEEETTTSB
T ss_pred CEEECCEEEEeCCCcc
Confidence 4455679999999874
No 22
>PRK05853 hypothetical protein; Validated
Probab=30.62 E-value=88 Score=26.93 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=22.8
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.|+-|- +-|+||..++++|. .|+.|+|.
T Consensus 42 T~wi~V~----~wg~lAe~v~~~L~------------KG~~V~V~ 70 (161)
T PRK05853 42 SLFITVN----CWGRLVTGVGAALG------------KGAPVIVV 70 (161)
T ss_pred ccEEEEE----EEhHHHHHHHHHcC------------CCCEEEEE
Confidence 4576554 56789999999997 79988875
No 23
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=30.14 E-value=53 Score=23.95 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=23.5
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 104 ~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
....|+=|-+ -|.+|..+++.|+ .||.|+|.
T Consensus 41 ~~~~~~~v~~----~g~~a~~~~~~~~------------kG~~V~v~ 71 (100)
T cd04496 41 EETDWIRVVA----FGKLAENAAKYLK------------KGDLVYVE 71 (100)
T ss_pred cccEEEEEEE----EhHHHHHHHHHhC------------CCCEEEEE
Confidence 3456777755 4569999999987 89998875
No 24
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=29.37 E-value=40 Score=27.64 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=28.7
Q ss_pred EEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeee
Q 026665 109 YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV 157 (235)
Q Consensus 109 ~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAe-kI~v 157 (235)
.|+|++|+.+|+.....+....|- || .+-.|+|+|.+ +|-+
T Consensus 2 ~~~d~~~~~~g~~~r~~~~~~~g~----~h----~~v~v~v~~~~g~vLl 43 (158)
T TIGR02150 2 ILVDENDNPIGTASKAEVHLQETP----LH----RAFSVFLFNEEGQLLL 43 (158)
T ss_pred EEECCCCCEeeeeeHHHhhhcCCC----eE----EEEEEEEEcCCCeEEE
Confidence 589999999999888777654442 22 23458888875 5555
No 25
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=27.38 E-value=13 Score=35.14 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=28.8
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCC
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSV 141 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~ 141 (235)
..-+||||+|--| ++....+++.|-+|.+.||++
T Consensus 132 dvP~VIDaDGL~L--v~q~~e~l~~~~~~viLTPNv 165 (306)
T KOG3974|consen 132 DVPLVIDADGLWL--VEQLPERLIGGYPKVILTPNV 165 (306)
T ss_pred CCcEEEcCCceEe--hhhchhhhhccCceeeeCCcH
Confidence 4789999999644 667778899999999999986
No 26
>COG0629 Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair]
Probab=26.77 E-value=58 Score=27.39 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=23.0
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.||=|= +.|++|..++.+|+ .|+.|+|.
T Consensus 50 t~~~~vv----~wgk~Ae~~~~yl~------------KG~~V~Ve 78 (167)
T COG0629 50 TDWIRVV----IWGKLAENAAEYLK------------KGSLVYVE 78 (167)
T ss_pred cceEEEE----EehHHHHHHHHHhc------------CCCEEEEE
Confidence 3676553 57889999999997 79888774
No 27
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=25.13 E-value=1.2e+02 Score=24.77 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=22.7
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
..||-|=+ .|++|..++++|. .|+.|.|-
T Consensus 46 t~w~~v~~----fg~~Ae~v~~~l~------------KG~~V~V~ 74 (131)
T PRK07274 46 ADFINVVL----WGKLAETLASYAS------------KGSLISID 74 (131)
T ss_pred EEEEEEEE----ehHHHHHHHHHcC------------CCCEEEEE
Confidence 46887754 5889999999986 78887763
No 28
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=23.08 E-value=1.4e+02 Score=26.19 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.|+=|- +.|++|..+|++|. .||.|+|.
T Consensus 52 t~fi~V~----~Wg~~Ae~va~~L~------------KGd~V~V~ 80 (186)
T PRK07772 52 ALFLRCS----IWRQAAENVAESLT------------KGMRVIVT 80 (186)
T ss_pred ceEEEEE----EecHHHHHHHHhcC------------CCCEEEEE
Confidence 4465453 56889999999986 89998875
No 29
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=22.60 E-value=77 Score=24.87 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.|+-|- ..|++|..++++|. .||.|.|.
T Consensus 46 t~~~~v~----~wg~~Ae~~~~~l~------------KG~~V~V~ 74 (112)
T PRK06752 46 VDFINCV----VWRKSAENVTEYCT------------KGSLVGIT 74 (112)
T ss_pred EEEEEEE----EehHHHHHHHHhcC------------CCCEEEEE
Confidence 4687664 56789999999986 78887764
No 30
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=22.52 E-value=92 Score=27.17 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.||=| .+.|++|..++++|+ .|+.|.|.
T Consensus 53 t~w~~V----~~fgk~Ae~~~~~L~------------KGs~V~Ve 81 (177)
T PRK09010 53 TEWHRV----VLFGKLAEVAGEYLR------------KGSQVYIE 81 (177)
T ss_pred eEEEEE----EEehhHHHHHHHhcC------------CCCEEEEE
Confidence 468777 467789999999987 67776653
No 31
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=21.65 E-value=55 Score=25.48 Aligned_cols=14 Identities=21% Similarity=0.674 Sum_probs=11.1
Q ss_pred ccceEEEEeCCCCC
Q 026665 104 SDKTWYVVDATDKI 117 (235)
Q Consensus 104 ~~r~W~vIDA~gqi 117 (235)
..|.|.|.|++|++
T Consensus 31 ~sR~W~I~d~~g~~ 44 (90)
T PF04379_consen 31 LSRHWIITDADGHV 44 (90)
T ss_dssp EEEEEEEEETTS-E
T ss_pred EccEEEEEeCCCCE
Confidence 56899999999853
No 32
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=21.58 E-value=99 Score=26.75 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=22.4
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.||-|. ..|++|..++++|. .|+.|+|.
T Consensus 51 t~w~~Vv----~fgk~AE~v~~~Lk------------KGs~V~Ve 79 (168)
T PRK06863 51 TEWHRIV----FYRRQAEVAGEYLR------------KGSQVYVE 79 (168)
T ss_pred ceEEEEE----EEhHHHHHHHHHCC------------CCCEEEEE
Confidence 4698885 56789999999986 67777664
No 33
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=21.46 E-value=69 Score=28.71 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=19.4
Q ss_pred cceEEEEe-CC---CCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEE
Q 026665 105 DKTWYVVD-AT---DKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIV 149 (235)
Q Consensus 105 ~r~W~vID-A~---gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVV 149 (235)
.+.|+||| |. .++++-|.. -+.++ ..|||.||
T Consensus 110 ~~~vlVilDs~H~~~hvl~eL~~-y~plv------------~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEHVLAELEA-YAPLV------------SPGSYLIV 145 (206)
T ss_dssp -SSEEEEESS----SSHHHHHHH-HHHT--------------TT-EEEE
T ss_pred CCceEEEECCCccHHHHHHHHHH-hCccC------------CCCCEEEE
Confidence 45777776 55 677777765 44444 59999988
No 34
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=21.45 E-value=30 Score=31.03 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhc
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRG 131 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~G 131 (235)
+--+||||+|+. ++++..+++.+-.
T Consensus 158 ~Ak~VVdATG~~-a~v~~~l~~~~~~ 182 (254)
T TIGR00292 158 RSRVVVDATGHD-AEIVAVCAKKIVL 182 (254)
T ss_pred EcCEEEEeecCC-chHHHHHHHHcCc
Confidence 356899999988 7999999999753
No 35
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=20.63 E-value=1.3e+02 Score=26.05 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=22.6
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIV 149 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVV 149 (235)
-.||-|. +.|++|..++++|+ .|+.|.|
T Consensus 52 T~w~~Vv----~fgk~Ae~v~~~l~------------KGs~V~V 79 (172)
T PRK05733 52 TEWHRVS----LFGKVAEIAGEYLR------------KGSQVYI 79 (172)
T ss_pred ceEEEEE----EehHHHHHHHHHhC------------CCCEEEE
Confidence 4798886 56789999999987 7877765
No 36
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.24 E-value=30 Score=30.24 Aligned_cols=47 Identities=21% Similarity=0.520 Sum_probs=30.4
Q ss_pred hhhhhhccCCCccc-eeecccCCCcc--cccceE----EEEeCCCCCchhhHHH
Q 026665 78 MFEQSEVNGPDIWN-NTWYPKAADHR--HSDKTW----YVVDATDKILGRLAST 124 (235)
Q Consensus 78 m~~~~e~~g~d~~~-kT~~~k~~~~~--~~~r~W----~vIDA~gqiLGRLAS~ 124 (235)
||+-++..|++..- -.|+..+..+. ...-+| ++||.+|+++.|.++.
T Consensus 93 ~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~ 146 (162)
T COG0386 93 MFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPK 146 (162)
T ss_pred eeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCC
Confidence 78888888988741 13333322210 122355 8999999999998764
No 37
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.12 E-value=1.4e+02 Score=29.19 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=29.3
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc
Q 026665 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE 153 (235)
Q Consensus 105 ~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAe 153 (235)
.-+|+-|-.-|- ||-||.++||- +|-+|++|-..
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKA--------------MG~rV~vis~~ 214 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKA--------------MGMRVTVISTS 214 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHH--------------hCcEEEEEeCC
Confidence 458998887777 99999999998 69999999765
No 38
>PLN02372 violaxanthin de-epoxidase
Probab=20.07 E-value=62 Score=32.40 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=23.2
Q ss_pred CcchhhhhhhccCCCccceeecccCCCcccccceEEEEeCCC
Q 026665 74 NQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATD 115 (235)
Q Consensus 74 ~~r~m~~~~e~~g~d~~~kT~~~k~~~~~~~~r~W~vIDA~g 115 (235)
-|||+++ +.+|-++.. ..++.++.+..|||+|+++
T Consensus 259 vq~fvqd---~~~P~il~n----~~NeyLhyqddWyIl~~k~ 293 (455)
T PLN02372 259 VQRFVQD---PNQPGILYN----HDNEYLHYQDDWYILSSKI 293 (455)
T ss_pred eeeeecc---CCCCceEEc----CCcceeecccceEEeeccc
Confidence 4566554 466766643 2455567888999999865
Done!