Query 026665
Match_columns 235
No_of_seqs 142 out of 1069
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 19:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_L Ribosomal protein L13; 100.0 8.3E-79 2.8E-83 540.6 7.2 216 1-225 1-231 (250)
2 2ftc_H L13MT, MRP-L13, 39S rib 100.0 3.7E-59 1.3E-63 388.7 11.9 136 91-226 1-138 (148)
3 3r8s_J 50S ribosomal protein L 100.0 4.1E-59 1.4E-63 386.3 10.7 132 91-225 1-132 (142)
4 3v2d_N 50S ribosomal protein L 100.0 1.1E-58 3.8E-63 383.0 10.7 129 91-224 1-129 (140)
5 2zjr_G 50S ribosomal protein L 100.0 2.1E-57 7.3E-62 386.7 12.3 139 85-228 23-161 (174)
6 3f1f_N 50S ribosomal protein L 100.0 1.5E-57 5.1E-62 384.2 8.5 129 91-224 24-152 (163)
7 1j3a_A 50S ribosomal protein L 100.0 4.5E-44 1.5E-48 295.9 5.7 110 108-230 1-112 (142)
8 1vq8_J 50S ribosomal protein L 100.0 1.7E-43 5.9E-48 293.6 4.1 105 104-224 5-110 (145)
9 4b6a_O 60S ribosomal protein L 100.0 6.7E-42 2.3E-46 296.5 6.5 117 105-233 3-120 (199)
10 4a17_I RPL13A, 60S ribosomal p 100.0 4.8E-40 1.7E-44 284.7 5.4 116 106-233 3-119 (198)
11 3iz5_K 60S ribosomal protein L 100.0 5.3E-39 1.8E-43 279.6 2.6 116 103-232 6-124 (206)
12 2zkr_j 60S ribosomal protein L 100.0 1.5E-37 5.3E-42 269.9 4.8 105 104-229 2-116 (203)
13 3jyw_M 60S ribosomal protein L 100.0 1E-37 3.5E-42 266.3 2.2 111 109-231 1-112 (178)
14 3stb_C RNA-editing complex pro 43.9 51 0.0017 27.1 6.1 32 104-150 83-114 (148)
15 3koj_A Uncharacterized protein 42.6 14 0.00047 28.5 2.4 29 106-150 52-80 (108)
16 1hzt_A Isopentenyl diphosphate 35.6 18 0.0006 28.5 2.1 44 106-157 4-48 (190)
17 3bbn_T Ribosomal protein S20; 31.7 9.9 0.00034 33.0 0.0 40 3-45 5-53 (202)
18 4dam_A Single-stranded DNA-bin 28.7 31 0.0011 27.0 2.4 31 105-151 61-91 (128)
19 3vdy_A SSB, single-stranded DN 27.6 34 0.0012 25.7 2.4 29 106-150 49-77 (116)
20 3lor_A Thiol-disulfide isomera 25.8 45 0.0015 24.4 2.8 28 104-131 120-156 (160)
21 3ulp_A Single-strand binding p 25.3 38 0.0013 25.8 2.3 30 105-150 52-82 (124)
22 2fkb_A Putative nudix hydrolas 24.7 83 0.0028 24.0 4.2 44 105-157 9-53 (180)
23 2vw9_A Single-stranded DNA bin 24.0 42 0.0015 26.1 2.4 29 106-150 48-76 (134)
24 2wsc_2 LHCA2, type II chloroph 23.7 17 0.00057 32.5 0.0 17 1-17 1-17 (269)
25 1z9f_A Single-strand binding p 23.5 43 0.0015 26.9 2.4 29 106-150 62-90 (153)
26 2v1m_A Glutathione peroxidase; 23.3 48 0.0016 24.4 2.5 26 106-131 134-168 (169)
27 3afp_A Single-stranded DNA-bin 23.0 44 0.0015 27.2 2.4 29 106-150 52-80 (168)
28 1qvc_A Single stranded DNA bin 21.5 51 0.0017 26.0 2.4 29 106-150 52-80 (145)
29 1eqq_A Single stranded DNA bin 21.3 49 0.0017 27.2 2.4 28 106-149 53-80 (178)
30 3u5r_E Uncharacterized protein 21.0 72 0.0025 25.6 3.3 30 105-134 144-191 (218)
31 2cvb_A Probable thiol-disulfid 20.8 77 0.0026 24.1 3.3 30 105-134 117-163 (188)
32 3tqy_A Single-stranded DNA-bin 20.4 54 0.0019 26.4 2.4 29 106-150 55-83 (158)
No 1
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=8.3e-79 Score=540.61 Aligned_cols=216 Identities=61% Similarity=0.959 Sum_probs=117.5
Q ss_pred CccccCCceEEecCCCCCCCCCCcccccccccccccccCccccccccC--CCCCCcccccceEEEecccc----------
Q 026665 1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASA--KSTSPLNTKRSFKVRCCQNL---------- 68 (235)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~f~g~~~~~~--~~s~~~~~~~~~~v~c~~~~---------- 68 (235)
||+..+++|+||||.+ ++.|+|++++ ..+||+||+++.. ..+.+++++.+++|+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 71 (250)
T 3bbo_L 1 MATMACASSLTFPSAQ--TQKSFFGTNV-------KQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKE 71 (250)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeeccceeccCCC--CCCccccccc-------ccCceeecccccccccccccccCCCcceEEeeeccchhhhhhccc
Confidence 8999999999999876 5799999999 8899999998764 33456677889999999983
Q ss_pred ---ccccCCcchhhhhhhccCCCccceeecccCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCC
Q 026665 69 ---SLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGA 145 (235)
Q Consensus 69 ---~~v~~~~r~m~~~~e~~g~d~~~kT~~~k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD 145 (235)
++||+||||||++.|.+|+|+|++||++|++++++++++||||||+||+|||||++||++|+|||||+||||+||||
T Consensus 72 ~~~~~v~~~~~~~~~~~~~~g~d~~~kT~~~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD 151 (250)
T 3bbo_L 72 FAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGA 151 (250)
T ss_dssp ----------------------------------------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSC
T ss_pred cccccccccccccccchhhcCCCccceeecCChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCC
Confidence 78999999999999999999999999999999777899999999999999999999999999999999999999999
Q ss_pred EEEEEecceeeeeCccccceeeeeccCCcCCCcccchhHhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchhc
Q 026665 146 YVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTSV 225 (235)
Q Consensus 146 ~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~~ 225 (235)
+|||||||+|++||+||++|.|++|+|||||+|+++++++++++|++||++|||||||||++||++|+|||||+|.+...
T Consensus 152 ~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh 231 (250)
T 3bbo_L 152 FVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPH 231 (250)
T ss_dssp CCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSC
T ss_pred EEEEEecceEEecCChhhceEEEEecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986543
No 2
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=3.7e-59 Score=388.75 Aligned_cols=136 Identities=28% Similarity=0.490 Sum_probs=130.5
Q ss_pred ceeecccCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeec
Q 026665 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (235)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (235)
|.||++|+++|++++++||||||+||+||||||+||++|+|||||+|||++||||+|||||||+|++||+||++|.||+|
T Consensus 1 m~t~~~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~h 80 (148)
T 2ftc_H 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSH 80 (148)
T ss_pred CcccccchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeee
Confidence 35899999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCcccchhHhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCc--cchhcc
Q 026665 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCM--CLTSVL 226 (235)
Q Consensus 171 tgyPGGlk~~t~~~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~--~p~~~~ 226 (235)
||||||+++++++++++++|++||++|||||||||++||++|+|||||+| -|.+..
T Consensus 81 tg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hP~~aq 138 (148)
T 2ftc_H 81 TGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDIL 138 (148)
T ss_pred eCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCChHHh
Confidence 99999999999999999999999999999999999999999999999999 554443
No 3
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=4.1e-59 Score=386.33 Aligned_cols=132 Identities=47% Similarity=0.788 Sum_probs=128.6
Q ss_pred ceeecccCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeec
Q 026665 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (235)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (235)
|+||++|+++ ++|+||||||+||+||||||+||++|+|||||+|||++||||+|||||||+|++||+||++|.||+|
T Consensus 1 mkt~~~~~~~---~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 77 (142)
T 3r8s_J 1 MKTFTAKPET---VKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHH 77 (142)
T ss_dssp CCCCCCCTTT---CCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEE
T ss_pred CCcccCChhh---ccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEe
Confidence 5799999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCcccchhHhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchhc
Q 026665 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTSV 225 (235)
Q Consensus 171 tgyPGGlk~~t~~~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~~ 225 (235)
||||||+++++++++++++|++||++|||||||||++||++|+|||||+|.+-..
T Consensus 78 tgypGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hph 132 (142)
T 3r8s_J 78 TGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNH 132 (142)
T ss_dssp CSSTTCEECCBHHHHHHHCSHHHHHHHHHHHSCSSHHHHHHHTTEEECSSSCCSC
T ss_pred cCcCCCccccCHHHHHhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCc
Confidence 9999999999999999999999999999999999999999999999999987543
No 4
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=1.1e-58 Score=383.01 Aligned_cols=129 Identities=43% Similarity=0.749 Sum_probs=125.5
Q ss_pred ceeecccCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeec
Q 026665 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (235)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (235)
|+||++| + ++++||||||+||+||||||+||++|+|||||+|||++||||+|||||||+|++||+||++|.|++|
T Consensus 1 m~t~~~~--~---~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 75 (140)
T 3v2d_N 1 MKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRY 75 (140)
T ss_dssp CCCCCCC--C---CCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEE
T ss_pred Ccccccc--c---ccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEe
Confidence 5799998 6 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCcccchhHhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchh
Q 026665 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTS 224 (235)
Q Consensus 171 tgyPGGlk~~t~~~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~ 224 (235)
||||||+++++++++++++|++||++|||||||||++||++|+|||||+|.+-.
T Consensus 76 tgypGglk~~~~~~~~~r~P~~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~hp 129 (140)
T 3v2d_N 76 SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHP 129 (140)
T ss_dssp CSSTTCEEEEEHHHHHHHCTHHHHHHHHHHTSCSSHHHHHHHHTEEECSSSCCS
T ss_pred cccCCcceeccHHHhhhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCC
Confidence 999999999999999999999999999999999999999999999999998754
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=2.1e-57 Score=386.66 Aligned_cols=139 Identities=40% Similarity=0.603 Sum_probs=127.3
Q ss_pred cCCCccceeecccCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccc
Q 026665 85 NGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164 (235)
Q Consensus 85 ~g~d~~~kT~~~k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~ 164 (235)
++.+.+|+||++|+ ++++||||||+||+||||||+||++|+|||||+|||++||||+|||||||+|++||+||++
T Consensus 23 ~~~~~~m~T~~~k~-----~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~ 97 (174)
T 2zjr_G 23 LLRSFKVKTYIPKN-----DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDD 97 (174)
T ss_dssp -------CCCCCCC-----SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSS
T ss_pred ccccceeeeeccCc-----ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhc
Confidence 34445789999987 5699999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccCCcCCCcccchhHhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchhccce
Q 026665 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTSVLSS 228 (235)
Q Consensus 165 K~Y~~HtgyPGGlk~~t~~~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~~~~~ 228 (235)
|.||+|||||||+++++++++++++|++||++|||||||||++||++|+|||||+|.+...-..
T Consensus 98 K~yy~htgypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~hph~aq 161 (174)
T 2zjr_G 98 KVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQ 161 (174)
T ss_dssp CEEEECCSSCSSCCEEEESTTTTSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSC
T ss_pred eEEEEecCcCCCcccccHHHHhhcChHHHHHHHHHhcCCCChhHHHHHhCeEEECCCCCChhcc
Confidence 9999999999999999999999999999999999999999999999999999999998765443
No 6
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=1.5e-57 Score=384.25 Aligned_cols=129 Identities=43% Similarity=0.749 Sum_probs=125.1
Q ss_pred ceeecccCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeec
Q 026665 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (235)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (235)
|+||++| + ++++||||||+||+||||||+||++|+|||||+|||++||||+|||||||+|++||+||++|.||+|
T Consensus 24 mkt~~~k--~---~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~h 98 (163)
T 3f1f_N 24 VKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRY 98 (163)
T ss_dssp -CCCCCC--C---CCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCB
T ss_pred Ccccccc--c---ccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEe
Confidence 6899998 5 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCcccchhHhhhcChhHHHHHHHhCcCCCChhHHHHhhcCeeeCccchh
Q 026665 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRVSSLILNQILCVCMCLTS 224 (235)
Q Consensus 171 tgyPGGlk~~t~~~l~~r~P~~IlkrAVrGMLPkn~lGr~~lkrLkVYa~~p~~ 224 (235)
||||||+++++++++++++|++||++|||||||||++||++|+|||||+|.+-.
T Consensus 99 tgypGglk~~t~~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~hP 152 (163)
T 3f1f_N 99 SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHP 152 (163)
T ss_dssp CSSTTCBCCEEHHHHHHSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCC
T ss_pred cCcCCcceeeehHHhhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCC
Confidence 999999999999999999999999999999999999999999999999998753
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=4.5e-44 Score=295.88 Aligned_cols=110 Identities=22% Similarity=0.317 Sum_probs=93.6
Q ss_pred EEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcc-cchhHhh
Q 026665 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKE-ETFDQLQ 186 (235)
Q Consensus 108 W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~-~t~~~l~ 186 (235)
|+||||+||+||||||+||++|+ |||+|||||||+|++||+|+++|.||+|+|||||+++ .+ ++++
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~ 67 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFY 67 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------C
T ss_pred CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-Cccc
Confidence 99999999999999999999999 9999999999999999999999999999999999877 67 9999
Q ss_pred hcChhHHHHHHHhCcCC-CChhHHHHhhcCeeeCccchhccceee
Q 026665 187 HRIPERIIEHAVRGMLP-KGRVSSLILNQILCVCMCLTSVLSSFF 230 (235)
Q Consensus 187 ~r~P~~IlkrAVrGMLP-kn~lGr~~lkrLkVYa~~p~~~~~~~~ 230 (235)
+++|++||++||||||| ||++||++|+|||||+|.|...-..+.
T Consensus 68 ~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp 112 (142)
T 1j3a_A 68 PKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQL 112 (142)
T ss_dssp CCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCC
T ss_pred ccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCc
Confidence 99999999999999999 899999999999999999887654443
No 8
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=1.7e-43 Score=293.60 Aligned_cols=105 Identities=26% Similarity=0.301 Sum_probs=101.5
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchh
Q 026665 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFD 183 (235)
Q Consensus 104 ~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~ 183 (235)
..++||||||+||+||||||+||++|+ |||+|||||||+|.+||+|+++|.||+|++|||| +++
T Consensus 5 ~~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~ 68 (145)
T 1vq8_J 5 EFDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNG 68 (145)
T ss_dssp CCCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSC
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHH
Confidence 346899999999999999999999999 9999999999999999999999999999999998 789
Q ss_pred HhhhcChhHHHHHHHhCcCC-CChhHHHHhhcCeeeCccchh
Q 026665 184 QLQHRIPERIIEHAVRGMLP-KGRVSSLILNQILCVCMCLTS 224 (235)
Q Consensus 184 ~l~~r~P~~IlkrAVrGMLP-kn~lGr~~lkrLkVYa~~p~~ 224 (235)
++++++|++||++||||||| ||++||++|+|||||+|.|..
T Consensus 69 ~~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p 110 (145)
T 1vq8_J 69 YFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD 110 (145)
T ss_dssp CCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS
T ss_pred HHhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC
Confidence 99999999999999999999 899999999999999999877
No 9
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=6.7e-42 Score=296.49 Aligned_cols=117 Identities=29% Similarity=0.346 Sum_probs=110.9
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchhH
Q 026665 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 184 (235)
Q Consensus 105 ~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~~ 184 (235)
.++|+||||+|++||||||.||+.|+ .||+|||||||+|.+||+|+++|.||+|+|||||++++++++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~------------~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~ 70 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHH------------TTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhc------------CCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHH
Confidence 35899999999999999999999998 699999999999999999999999999999999999999999
Q ss_pred hhhcChhHHHHHHHhCcCC-CChhHHHHhhcCeeeCccchhccceeeEEE
Q 026665 185 LQHRIPERIIEHAVRGMLP-KGRVSSLILNQILCVCMCLTSVLSSFFIIV 233 (235)
Q Consensus 185 l~~r~P~~IlkrAVrGMLP-kn~lGr~~lkrLkVYa~~p~~~~~~~~~~~ 233 (235)
+++|+|++||++||||||| ||++||.+|+|||||+|.|..+-..+.++|
T Consensus 71 ~~~r~P~~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vv 120 (199)
T 4b6a_O 71 FHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVV 120 (199)
T ss_dssp CCCCSHHHHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBC
T ss_pred HhhcCcHHHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEec
Confidence 9999999999999999999 699999999999999999988877666554
No 10
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=4.8e-40 Score=284.65 Aligned_cols=116 Identities=26% Similarity=0.260 Sum_probs=109.0
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchhHh
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQL 185 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~~l 185 (235)
++||||||+||+||||||.||++|+ |||+|||||||+|.+||+||++|.||+|..++++.++.+++++
T Consensus 3 ~~w~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~ 70 (198)
T 4a17_I 3 DKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQ 70 (198)
T ss_dssp SSCEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCC
T ss_pred ccEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccc
Confidence 6899999999999999999999998 9999999999999999999999999999999999998889999
Q ss_pred hhcChhHHHHHHHhCcCCC-ChhHHHHhhcCeeeCccchhccceeeEEE
Q 026665 186 QHRIPERIIEHAVRGMLPK-GRVSSLILNQILCVCMCLTSVLSSFFIIV 233 (235)
Q Consensus 186 ~~r~P~~IlkrAVrGMLPk-n~lGr~~lkrLkVYa~~p~~~~~~~~~~~ 233 (235)
++++|++||++||+||||+ |++||.+|+|||||+|.|...-..+.++|
T Consensus 71 ~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vv 119 (198)
T 4a17_I 71 HFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVV 119 (198)
T ss_dssp CCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCC
T ss_pred cccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChhhcccccc
Confidence 9999999999999999996 99999999999999999987765555543
No 11
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=5.3e-39 Score=279.58 Aligned_cols=116 Identities=24% Similarity=0.285 Sum_probs=103.1
Q ss_pred cccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcc--c
Q 026665 103 HSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKE--E 180 (235)
Q Consensus 103 ~~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~--~ 180 (235)
.++++||||||+||+||||||.||++|+ |||+|||||||+|.+||+||++|.||+| |.+.... .
T Consensus 6 ~f~r~W~VIDA~g~~LGRLAS~VAk~Ll------------~Gd~VVVINAekI~iTG~K~~~K~yy~~--~l~~~~~~np 71 (206)
T 3iz5_K 6 GVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYLR--FLRKRMNTKP 71 (206)
T ss_dssp SCCSSCCEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHH--HHHHTTCSCS
T ss_pred ccceeEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCcccCcCCchHhhhhheee--ecceeecCCC
Confidence 3889999999999999999999999998 9999999999999999999999999987 4443332 2
Q ss_pred chhHhhhcChhHHHHHHHhCcCCC-ChhHHHHhhcCeeeCccchhccceeeEE
Q 026665 181 TFDQLQHRIPERIIEHAVRGMLPK-GRVSSLILNQILCVCMCLTSVLSSFFII 232 (235)
Q Consensus 181 t~~~l~~r~P~~IlkrAVrGMLPk-n~lGr~~lkrLkVYa~~p~~~~~~~~~~ 232 (235)
+++++++++|++||++||+||||+ |++||++|+|||||+|.|...-..+.++
T Consensus 72 ~~~~~~~r~P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~v 124 (206)
T 3iz5_K 72 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMV 124 (206)
T ss_dssp SSCSCCCCSHHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCC
T ss_pred cccchhhcCHHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhccccc
Confidence 568999999999999999999997 8999999999999999998765554443
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.5e-37 Score=269.87 Aligned_cols=105 Identities=27% Similarity=0.351 Sum_probs=91.9
Q ss_pred ccceEEEEeCCCCCchhhHHHHHH-HHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeee-ecc-------CCc
Q 026665 104 SDKTWYVVDATDKILGRLASTIAI-HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYR-RHS-------GRP 174 (235)
Q Consensus 104 ~~r~W~vIDA~gqiLGRLAS~IAk-~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~-~Ht-------gyP 174 (235)
.+++||||||+||+||||||.||+ +|+ ||+|||||||+|.+||+||++|.|| +|+ ++|
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~-------------G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~ 68 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLL-------------GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSR 68 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHH-------------TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSS
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhC-------------CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCC
Confidence 358999999999999999999999 776 6799999999999999999999999 998 788
Q ss_pred CCCcccchhHhhhcChhHHHHHHHhCcCCC-ChhHHHHhhcCeeeCccchhcccee
Q 026665 175 GGMKEETFDQLQHRIPERIIEHAVRGMLPK-GRVSSLILNQILCVCMCLTSVLSSF 229 (235)
Q Consensus 175 GGlk~~t~~~l~~r~P~~IlkrAVrGMLPk-n~lGr~~lkrLkVYa~~p~~~~~~~ 229 (235)
|+ +++++|++||++||+||||+ |++||++|+|||||+|.|...-..+
T Consensus 69 G~--------~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk 116 (203)
T 2zkr_j 69 GP--------YDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKK 116 (203)
T ss_dssp CC--------CCCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCC
T ss_pred Cc--------cccCChHHHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcC
Confidence 87 57899999999999999999 7999999999999999986554433
No 13
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=1e-37 Score=266.32 Aligned_cols=111 Identities=25% Similarity=0.304 Sum_probs=99.8
Q ss_pred EEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeeeCccccceeeeeccCCcCCCcccchhHhhhc
Q 026665 109 YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHR 188 (235)
Q Consensus 109 ~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGGlk~~t~~~l~~r 188 (235)
+||||+||+||||||+||++|+ |||+|||||||||.+||+||++|.||+|..+.+...+.+++++++|
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r 68 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFR 68 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCS
T ss_pred CEEcCCCCchHHHHHHHHHHHh------------CCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccC
Confidence 5899999999999999999998 9999999999999999999999999999554555555677999999
Q ss_pred ChhHHHHHHHhCcCC-CChhHHHHhhcCeeeCccchhccceeeE
Q 026665 189 IPERIIEHAVRGMLP-KGRVSSLILNQILCVCMCLTSVLSSFFI 231 (235)
Q Consensus 189 ~P~~IlkrAVrGMLP-kn~lGr~~lkrLkVYa~~p~~~~~~~~~ 231 (235)
+|++||++||||||| ||++||++|+|||||+|.|...-..+.+
T Consensus 69 ~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~ 112 (178)
T 3jyw_M 69 APSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRV 112 (178)
T ss_dssp STTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCSS
T ss_pred CHHHHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchhhcccc
Confidence 999999999999999 5999999999999999998876554443
No 14
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=43.88 E-value=51 Score=27.11 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.6
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 104 ~~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
...+|+-|=+-| |.||..|.++|. .|+.|+|.
T Consensus 83 ~~tdf~~V~vfG---g~lAE~i~~ylk------------kG~rVlVe 114 (148)
T 3stb_C 83 PDKDFHTVRVFD---SDYSSRVKEQLR------------DGEWFLVT 114 (148)
T ss_dssp CSEEEEEEEECS---HHHHHHHHHHCC------------TTCEEEEE
T ss_pred CccceEEEEEEC---ChHHHHHHHHhc------------CCCEEEEE
Confidence 457899998877 899999999997 89998774
No 15
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=42.60 E-value=14 Score=28.47 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.2
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.|+=+-| -|++|..++++|. .||.|+|-
T Consensus 52 t~fi~vv~----wgk~AE~~~~yl~------------KG~~V~Ve 80 (108)
T 3koj_A 52 PARLKVVG----WGAVAQELQDRCR------------LNDEVVLE 80 (108)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----EhHHHHHHHHhCC------------CCCEEEEE
Confidence 46777655 5799999999997 89998764
No 16
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=35.60 E-value=18 Score=28.46 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=8.6
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeee
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV 157 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAe-kI~v 157 (235)
..|.|+|..|+++|......+..-.| .++. +-.|+|+|.+ ++.+
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~----~~~~----~v~~~i~~~~g~vLl 48 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADT----RLHL----AFSSWLFNAKGQLLV 48 (190)
T ss_dssp -------------------------------CEE----CEEEEEECTTCCEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCC----ceEE----EEEEEEEcCCCEEEE
Confidence 47899999999999765544442222 1222 4456777743 4444
No 17
>3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.72 E-value=9.9 Score=33.01 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=0.0
Q ss_pred cccCCceEEecC---------CCCCCCCCCcccccccccccccccCcccccc
Q 026665 3 TLCTPTCVIFSS---------LQSSSSSSSFKTLNTGTTISSSTTPFLGFSV 45 (235)
Q Consensus 3 ~~~~~~~~~~~~---------~~~~~~~~s~~~~~~~~~~~~~~~~f~g~~~ 45 (235)
..|.++|.++|+ .++|+||+||++-.. .++..++-++|+-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~fs~ 53 (202)
T 3bbn_T 5 VQCLSSCATLESQFKVLSLKGISCSSPSSSFSNRRG---ASATLSSSLSFSQ 53 (202)
T ss_dssp ----------------------------------------------------
T ss_pred hhhhhhhhcCchhhheeeecccccCCcccccCCccc---Cccccccccchhh
Confidence 468889998886 356667778777653 2223344455543
No 18
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=28.66 E-value=31 Score=27.00 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=24.8
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 026665 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 151 (235)
Q Consensus 105 ~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVIN 151 (235)
.-.|+=|-| -|++|..++++|. .||.|+|.=
T Consensus 61 ~t~w~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 91 (128)
T 4dam_A 61 HTNFFTVWA----NRQLATNASGSLA------------VGDPVVVQG 91 (128)
T ss_dssp EEEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred CcEEEEEEE----EcHHHHHHHHhcC------------CCCEEEEEE
Confidence 446887766 4789999999997 899988754
No 19
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=27.58 E-value=34 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.|+=|-| .|++|..++++|. .||.|.|.
T Consensus 49 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 77 (116)
T 3vdy_A 49 ADYVNCTL----WRKTAENTALYCQ------------KGSLVGVS 77 (116)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ECHHHHHHHHhCC------------CCCEEEEE
Confidence 36755544 5889999999986 79988775
No 20
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=25.82 E-value=45 Score=24.37 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=21.5
Q ss_pred ccceEEEEeCCCCCchh---------hHHHHHHHHhc
Q 026665 104 SDKTWYVVDATDKILGR---------LASTIAIHIRG 131 (235)
Q Consensus 104 ~~r~W~vIDA~gqiLGR---------LAS~IAk~L~G 131 (235)
.-+.++|||.+|+++.+ |...|.++|..
T Consensus 120 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 120 GTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp SSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred ccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 34679999999998877 66777777653
No 21
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=25.26 E-value=38 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=23.4
Q ss_pred cceEEEEeCCCCCch-hhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 105 DKTWYVVDATDKILG-RLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 105 ~r~W~vIDA~gqiLG-RLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
.-.||=|-| .| ++|..++++|. .||.|+|.
T Consensus 52 ~t~~~~v~~----wg~~~Ae~~~~~l~------------KG~~V~V~ 82 (124)
T 3ulp_A 52 KTDWHRIVV----YDQNIVDLIDKYLR------------KGRRVYVQ 82 (124)
T ss_dssp EEEEEEEEE----CCHHHHHHHHHHCC------------TTCEEEEE
T ss_pred ccEEEEEEE----EEchHHHHHHhhcC------------CCCEEEEE
Confidence 346877655 46 89999999996 89998875
No 22
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=24.74 E-value=83 Score=23.97 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=28.2
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeee
Q 026665 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV 157 (235)
Q Consensus 105 ~r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVINAe-kI~v 157 (235)
...|-|+|..|+++|.+-...++... .++ .+-.|+|+|.+ ++.+
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~~~~~-----~~~----~~~~v~i~~~~~~vLl 53 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQMRAQC-----LRH----RATYIVVHDGMGKILV 53 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHT-----CCE----EEEEEEEECSSSCEEE
T ss_pred CeeEEEECCCCCEeeEEEHHHhhccC-----cee----eEEEEEEECCCCEEEE
Confidence 35799999999999998766554321 122 24456777754 4444
No 23
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=23.99 E-value=42 Score=26.14 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.|+=|-| .|++|..++++|. .||.|.|.
T Consensus 48 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 76 (134)
T 2vw9_A 48 VCFIDARL----FGRTAEIANQYLS------------KGSSVLIE 76 (134)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----EcHHHHHHHHhCC------------CCCEEEEE
Confidence 35766644 5789999999986 67776664
No 24
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=23.69 E-value=17 Score=32.51 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=0.0
Q ss_pred CccccCCceEEecCCCC
Q 026665 1 MATLCTPTCVIFSSLQS 17 (235)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (235)
||++|+++++.-.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (269)
T 2wsc_2 1 MASACASSAIAAVAIST 17 (269)
T ss_dssp -----------------
T ss_pred CchhHhhHHHHHhhcCc
Confidence 89999999888554433
No 25
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=23.49 E-value=43 Score=26.95 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=22.6
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.|+=|=| -|++|..++++|. .|+.|+|.
T Consensus 62 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~Ve 90 (153)
T 1z9f_A 62 TDFFRIVT----FGRLAEFARTYLT------------KGRLVLVE 90 (153)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred eEEEEEEE----ECHHHHHHHhhCC------------CCCEEEEE
Confidence 35766644 4789999999986 89988875
No 26
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=23.27 E-value=48 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=18.8
Q ss_pred ceEEEEeCCCCCchh---------hHHHHHHHHhc
Q 026665 106 KTWYVVDATDKILGR---------LASTIAIHIRG 131 (235)
Q Consensus 106 r~W~vIDA~gqiLGR---------LAS~IAk~L~G 131 (235)
...+|||.+|+++++ |...|.++|.+
T Consensus 134 P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 168 (169)
T 2v1m_A 134 FSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEK 168 (169)
T ss_dssp TCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred ceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 378999999999876 45556666543
No 27
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=23.02 E-value=44 Score=27.19 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=22.7
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.||=|-+ -|++|..++++|. .||.|+|.
T Consensus 52 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~Ve 80 (168)
T 3afp_A 52 ALFLRCNI----WREAAENVAESLT------------RGARVIVT 80 (168)
T ss_dssp CEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ehHHHHHHHHhCC------------CCCEEEEE
Confidence 46776654 4789999999996 78888875
No 28
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=21.47 E-value=51 Score=26.02 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.||=|-| .|++|..++++|. .||.|+|.
T Consensus 52 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 80 (145)
T 1qvc_A 52 TEWHRVVL----FGKLAEVASEYLR------------KGSQVYIE 80 (145)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ehHHHHHHHHhcC------------CCCEEEEE
Confidence 46777655 4679999999986 67777764
No 29
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=21.33 E-value=49 Score=27.23 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=20.8
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIV 149 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVV 149 (235)
-.||=|=+ .|+||..++++|. .||.|+|
T Consensus 53 t~~i~vv~----wg~~Ae~~~~~l~------------KG~~V~V 80 (178)
T 1eqq_A 53 TEWHRVVL----FGKLAEVASEYLR------------KGSQVYI 80 (178)
T ss_dssp EEEEEEEE----CHHHHHHHHHHCC------------TTCEEEE
T ss_pred cEEEEEEE----ccHHHHHHHHhcC------------CCCEEEE
Confidence 46776655 5789999999986 6776665
No 30
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=20.96 E-value=72 Score=25.56 Aligned_cols=30 Identities=13% Similarity=0.454 Sum_probs=24.0
Q ss_pred cceEEEEeCCCCCchh------------------hHHHHHHHHhcCCC
Q 026665 105 DKTWYVVDATDKILGR------------------LASTIAIHIRGKNL 134 (235)
Q Consensus 105 ~r~W~vIDA~gqiLGR------------------LAS~IAk~L~GKhK 134 (235)
.+..+|||.+|+++.| |...|..+|.|+.-
T Consensus 144 ~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 191 (218)
T 3u5r_E 144 TPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDV 191 (218)
T ss_dssp ESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCC
T ss_pred CCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCC
Confidence 3688999999999854 78888888887643
No 31
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=20.79 E-value=77 Score=24.12 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=23.3
Q ss_pred cceEEEEeCCCCCchh-----------------hHHHHHHHHhcCCC
Q 026665 105 DKTWYVVDATDKILGR-----------------LASTIAIHIRGKNL 134 (235)
Q Consensus 105 ~r~W~vIDA~gqiLGR-----------------LAS~IAk~L~GKhK 134 (235)
.+..+|||.+|+++.+ |...|.++|.|+..
T Consensus 117 ~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~ 163 (188)
T 2cvb_A 117 TPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEP 163 (188)
T ss_dssp ESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred CCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCCC
Confidence 3678999999998876 67778888876643
No 32
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=20.40 E-value=54 Score=26.37 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026665 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (235)
Q Consensus 106 r~W~vIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~d~GD~VVVI 150 (235)
-.||=|=| .|+||..++++|. .|+.|+|.
T Consensus 55 t~~i~vv~----wg~~Ae~~~~~l~------------KG~~V~Ve 83 (158)
T 3tqy_A 55 TEWHRIAF----FNRLAEIVGEYLR------------KGSKIYIE 83 (158)
T ss_dssp EEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred eEEEEEEE----EhHHHHHHHhhcC------------CCCEEEEE
Confidence 46765544 5789999999986 67776663
Done!