Query 026669
Match_columns 235
No_of_seqs 110 out of 472
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 19:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026669.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026669hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1be3k_ f.23.15.1 (K:) Subunit 30.5 7.8 0.00057 18.2 0.7 11 208-218 11-21 (26)
2 d1mkma1 a.4.5.33 (A:1-75) Tran 15.0 46 0.0034 19.8 2.3 46 25-73 5-51 (75)
3 d1kbha_ a.153.1.1 (A:) Nuclear 14.9 74 0.0054 17.2 2.8 25 8-32 7-33 (47)
4 d2gnoa1 a.80.1.1 (A:209-306) g 13.1 1.4E+02 0.011 18.0 4.8 32 8-40 22-53 (98)
5 d1jt6a2 a.121.1.1 (A:73-187) M 10.9 2E+02 0.014 18.3 6.5 54 169-228 39-92 (115)
6 d1h6pa_ a.146.1.1 (A:) TRF2 {H 9.6 56 0.0041 23.8 1.6 49 7-55 37-93 (203)
7 d1kcfa1 a.140.2.1 (A:3-38) Mit 9.6 1.1E+02 0.0083 15.0 2.3 9 30-38 6-14 (36)
8 d2f76x1 a.61.1.3 (X:1-94) Maso 9.0 2.2E+02 0.016 17.6 5.0 53 2-54 3-64 (94)
9 d1xl3c1 a.243.1.1 (C:2-92) Tye 8.0 54 0.0039 20.8 0.7 19 17-35 58-76 (91)
10 d3bqoa1 a.146.1.1 (A:62-265) T 6.6 1.1E+02 0.0083 22.1 2.1 28 14-41 48-75 (204)
No 1
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=30.54 E-value=7.8 Score=18.22 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=7.9
Q ss_pred cchhhhhHHHH
Q 026669 208 RVTGAFGFVTS 218 (235)
Q Consensus 208 ~~vg~~G~iSs 218 (235)
|.||..|++|+
T Consensus 11 gavgavglvsa 21 (26)
T d1be3k_ 11 GAVGAVGLVSA 21 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhcceeEEee
Confidence 45778888775
No 2
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=14.96 E-value=46 Score=19.77 Aligned_cols=46 Identities=4% Similarity=0.177 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhccCCcchHHhHHHhhhHHH-HHHHhhhcHHHHHHhh
Q 026669 25 DKICRAIQYGSKFLSDGQPGTAQNVDKSTSLAR-KVFRLFKFVNDLHALI 73 (235)
Q Consensus 25 DK~~r~iQY~~kll~~~~~~~~~~l~~~ls~aR-k~~Rl~k~l~~~~~~~ 73 (235)
||.++++.+.+. ...|-....+...++..| .+.|+.+.+.....+.
T Consensus 5 ~r~l~IL~~~a~---~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~ 51 (75)
T d1mkma1 5 KKAFEILDFIVK---NPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL 51 (75)
T ss_dssp HHHHHHHHHHHH---CSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHh---CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 555666665442 222334555666666554 3456666665544443
No 3
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.90 E-value=74 Score=17.24 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcccc--hHHHHHHHHH
Q 026669 8 RAELALVVLYLNKAE--ARDKICRAIQ 32 (235)
Q Consensus 8 ~~~l~~~~~~l~t~~--GRDK~~r~iQ 32 (235)
...++++..+|+.++ |.+-+=|.+.
T Consensus 7 ~aLldQL~s~L~~~D~~~LeEiDrALG 33 (47)
T d1kbha_ 7 RALLDQLHTLLSNTDATGLEEIDRALG 33 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHhC
Confidence 567999999999777 7777666543
No 4
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=13.08 E-value=1.4e+02 Score=18.01 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhcc
Q 026669 8 RAELALVVLYLNKAEARDKICRAIQYGSKFLSD 40 (235)
Q Consensus 8 ~~~l~~~~~~l~t~~GRDK~~r~iQY~~kll~~ 40 (235)
.++++-|-...++..|||-++ ++|-..|++..
T Consensus 22 k~ff~lfdqv~ntitg~dafl-liq~~~riilh 53 (98)
T d2gnoa1 22 KEFFALFDQVTNTITGKDAFL-LIQRLTRIILH 53 (98)
T ss_dssp GGHHHHHHHHHHHSCTHHHHH-HHHHHHHHHHH
T ss_pred chHHHHHHHHHhhcccchHHH-HHHHHHHHhcc
Confidence 456777777889999999876 67888888765
No 5
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=10.91 E-value=2e+02 Score=18.32 Aligned_cols=54 Identities=6% Similarity=-0.055 Sum_probs=33.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCCCCCCCccchhhhhHHHHHHHHHHhCCC
Q 026669 169 QYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPA 228 (235)
Q Consensus 169 ~~~~~~~~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~vg~~G~iSsli~~y~~w~~ 228 (235)
+..+.+++.+.++.++++.+.+=.+.-+.. +..+.-+....+++++-|++. |.+
T Consensus 39 e~~~~i~~lr~~y~~~~~~Ii~eGi~~G~f-----~~~d~~~~~~~il~~lng~~~-Wy~ 92 (115)
T d1jt6a2 39 SINEKMNKLENKYIDAYHVIFKEGNLNGEW-----SINDVNAVSKIAANAVNGIVT-FTH 92 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSC-----CCSCHHHHHHHHHHHHHHHHH-SCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCce-----eccCHHHHHHHHHHHHHHHHH-Hhc
Confidence 334444455556666666666655544332 344566778888888888884 654
No 6
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.64 E-value=56 Score=23.84 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=29.5
Q ss_pred hHHHHHH-HHHHhcccchHHHHHHHHHHHHHHhccCCc-------chHHhHHHhhhH
Q 026669 7 TRAELAL-VVLYLNKAEARDKICRAIQYGSKFLSDGQP-------GTAQNVDKSTSL 55 (235)
Q Consensus 7 ~~~~l~~-~~~~l~t~~GRDK~~r~iQY~~kll~~~~~-------~~~~~l~~~ls~ 55 (235)
.++.++- ++..++....-+|.+|+.|+.+|+-.+.+. +...-|+|.++.
T Consensus 37 ~rdi~eall~~~~~~~~~~~kti~i~QfL~RI~eG~~LD~~Fd~~~~~TPLESAl~v 93 (203)
T d1h6pa_ 37 IRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINV 93 (203)
T ss_dssp HHHHHHHHTTSCCC----CHHHHHHHHHHHHHHTTTCC--CCCTTCSSCHHHHHHHH
T ss_pred HHHHHHHHHhCccccccchhhHHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHH
Confidence 3455555 447777888889999999999999865331 123455665544
No 7
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=9.63 E-value=1.1e+02 Score=14.98 Aligned_cols=9 Identities=22% Similarity=0.021 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 026669 30 AIQYGSKFL 38 (235)
Q Consensus 30 ~iQY~~kll 38 (235)
++|..|++.
T Consensus 6 flqhicklt 14 (36)
T d1kcfa1 6 FLQHICKLT 14 (36)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 344444443
No 8
>d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]}
Probab=9.03 E-value=2.2e+02 Score=17.63 Aligned_cols=53 Identities=6% Similarity=-0.075 Sum_probs=36.5
Q ss_pred cchHHhHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHhccCC------cchHHhHHHhhh
Q 026669 2 STLDATRAELALVVLYLNKAE---ARDKICRAIQYGSKFLSDGQ------PGTAQNVDKSTS 54 (235)
Q Consensus 2 ~~l~~~~~~l~~~~~~l~t~~---GRDK~~r~iQY~~kll~~~~------~~~~~~l~~~ls 54 (235)
|++|+-...+..+-.+|.... -++++.+++++.-+..-|-. +..+.+++..+.
T Consensus 3 q~~Sk~~~~i~~Lk~lLk~rGvkV~~~~L~~f~~~I~~~cPWFp~~Gtl~~~~W~kvG~~l~ 64 (94)
T d2f76x1 3 QELSQHERYVEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_dssp CSSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHCCeecCHHHHHHHHHHHHHhCCCccccCCccHHHHHHHHHHHH
Confidence 567765566677777776654 78999999999988887721 234566666653
No 9
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=8.02 E-value=54 Score=20.78 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.8
Q ss_pred HhcccchHHHHHHHHHHHH
Q 026669 17 YLNKAEARDKICRAIQYGS 35 (235)
Q Consensus 17 ~l~t~~GRDK~~r~iQY~~ 35 (235)
..+..++|+|++..+|=+.
T Consensus 58 ~f~d~e~R~~lL~a~Q~AL 76 (91)
T d1xl3c1 58 VFSDEEQRQNLLQMCQNAI 76 (91)
T ss_dssp GSSCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHH
Confidence 4577889999999999664
No 10
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.65 E-value=1.1e+02 Score=22.12 Aligned_cols=28 Identities=4% Similarity=-0.035 Sum_probs=22.3
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHhccC
Q 026669 14 VVLYLNKAEARDKICRAIQYGSKFLSDG 41 (235)
Q Consensus 14 ~~~~l~t~~GRDK~~r~iQY~~kll~~~ 41 (235)
++..++...-+.|.+|+.|+.+|+-.+.
T Consensus 48 l~~~~~~~~~~~k~i~i~QfLsRI~eG~ 75 (204)
T d3bqoa1 48 IHGLSSLTACQLRTIYICQFLTRIAAGK 75 (204)
T ss_dssp HHTCSCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HhCccccCccchhHHHHHHHHHHHHcCC
Confidence 4456667778889999999999998653
Done!