Citrus Sinensis ID: 026671
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 235 | ||||||
| 225461810 | 235 | PREDICTED: bidirectional sugar transport | 0.957 | 0.957 | 0.773 | 1e-95 | |
| 356544144 | 235 | PREDICTED: bidirectional sugar transport | 1.0 | 1.0 | 0.731 | 6e-94 | |
| 356556652 | 235 | PREDICTED: bidirectional sugar transport | 0.974 | 0.974 | 0.746 | 1e-93 | |
| 351722328 | 235 | uncharacterized protein LOC100305842 [Gl | 1.0 | 1.0 | 0.731 | 2e-92 | |
| 358343709 | 235 | Protein RUPTURED POLLEN GRAIN [Medicago | 0.978 | 0.978 | 0.717 | 4e-90 | |
| 358348726 | 236 | Protein RUPTURED POLLEN GRAIN [Medicago | 0.953 | 0.949 | 0.737 | 5e-89 | |
| 388506414 | 236 | unknown [Medicago truncatula] | 0.953 | 0.949 | 0.737 | 1e-88 | |
| 217073964 | 236 | unknown [Medicago truncatula] gi|3884951 | 0.953 | 0.949 | 0.733 | 9e-88 | |
| 388521553 | 235 | unknown [Lotus japonicus] | 0.953 | 0.953 | 0.758 | 1e-85 | |
| 356554726 | 231 | PREDICTED: bidirectional sugar transport | 0.978 | 0.995 | 0.692 | 1e-83 |
| >gi|225461810|ref|XP_002285636.1| PREDICTED: bidirectional sugar transporter SWEET2 [Vitis vinifera] gi|302142809|emb|CBI20104.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/225 (77%), Positives = 196/225 (87%)
Query: 11 TVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPL 70
T+ KDA G+AGNIFAFGLFVSP+PTFRRI RN STE FSGLPY+YALLNCL+T+WYGTPL
Sbjct: 11 TICKDAAGVAGNIFAFGLFVSPIPTFRRIARNRSTESFSGLPYIYALLNCLVTLWYGTPL 70
Query: 71 VSADNILVTTVNSIGAAFQLVYIILFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQIV 130
VS +NI+VTTVNS+GAAFQLVYIILFITYT+K KKVRM GLL+ I +F +IV SL+I
Sbjct: 71 VSYNNIMVTTVNSMGAAFQLVYIILFITYTDKRKKVRMFGLLMVDIVLFLVIVVGSLEIS 130
Query: 131 NPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGI 190
+ R+M VG LSCAALISMFASPLF+INLVIQT+SVEFMPFYLSLSTFLMS SFLAYGI
Sbjct: 131 DFTIRRMVVGFLSCAALISMFASPLFVINLVIQTRSVEFMPFYLSLSTFLMSASFLAYGI 190
Query: 191 MNWDPFIYVPNGIGTILGIVQLALYFNYKETSGEESRDPLIVSYA 235
+N DPF+YVPNG GT+LGIVQL LY YK TS EESR+PLIVSY
Sbjct: 191 LNNDPFVYVPNGAGTVLGIVQLGLYSYYKRTSAEESREPLIVSYG 235
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544144|ref|XP_003540515.1| PREDICTED: bidirectional sugar transporter SWEET2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356556652|ref|XP_003546637.1| PREDICTED: bidirectional sugar transporter SWEET2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|351722328|ref|NP_001237496.1| uncharacterized protein LOC100305842 [Glycine max] gi|255626749|gb|ACU13719.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|358343709|ref|XP_003635940.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] gi|355501875|gb|AES83078.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] gi|388509868|gb|AFK43000.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|358348726|ref|XP_003638394.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] gi|355504329|gb|AES85532.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|388506414|gb|AFK41273.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|217073964|gb|ACJ85342.1| unknown [Medicago truncatula] gi|388495182|gb|AFK35657.1| unknown [Medicago truncatula] gi|388517353|gb|AFK46738.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|388521553|gb|AFK48838.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
| >gi|356554726|ref|XP_003545694.1| PREDICTED: bidirectional sugar transporter SWEET2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 235 | ||||||
| TAIR|locus:2099362 | 236 | SWEET2 "AT3G14770" [Arabidopsi | 0.961 | 0.957 | 0.634 | 4e-74 | |
| UNIPROTKB|A2WR31 | 243 | SWEET2A "Bidirectional sugar t | 0.919 | 0.888 | 0.557 | 9e-61 | |
| UNIPROTKB|Q5JJY5 | 243 | SWEET2A "Bidirectional sugar t | 0.919 | 0.888 | 0.557 | 9e-61 | |
| UNIPROTKB|B8A833 | 230 | SWEET2B "Bidirectional sugar t | 0.927 | 0.947 | 0.495 | 1.3e-52 | |
| UNIPROTKB|Q5N8J1 | 230 | SWEET2B "Bidirectional sugar t | 0.927 | 0.947 | 0.495 | 1.3e-52 | |
| UNIPROTKB|Q8RZQ8 | 273 | SWEET1A "Bidirectional sugar t | 0.876 | 0.754 | 0.466 | 1.1e-48 | |
| TAIR|locus:2026997 | 247 | SWEET1 [Arabidopsis thaliana ( | 0.897 | 0.854 | 0.450 | 1.8e-48 | |
| UNIPROTKB|B8AYH1 | 261 | SWEET1B "Bidirectional sugar t | 0.876 | 0.789 | 0.449 | 1.1e-46 | |
| UNIPROTKB|Q60EC2 | 261 | SWEET1B "Bidirectional sugar t | 0.876 | 0.789 | 0.449 | 1.1e-46 | |
| TAIR|locus:2123426 | 258 | SWEET7 [Arabidopsis thaliana ( | 0.919 | 0.837 | 0.393 | 1.1e-39 |
| TAIR|locus:2099362 SWEET2 "AT3G14770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 144/227 (63%), Positives = 173/227 (76%)
Query: 9 ALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGT 68
+L++ KD GIAGNIFAFGLFVSP+PTFRRI+RN STE+FSGLPY+YALLNCLI +WYGT
Sbjct: 9 SLSMCKDVAGIAGNIFAFGLFVSPMPTFRRIMRNKSTEQFSGLPYIYALLNCLICLWYGT 68
Query: 69 PLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQ 128
P +S N ++ TVNS+GA FQL YIILFI +T+K K++MLGLL V + +IVA SLQ
Sbjct: 69 PFISHSNAMLMTVNSVGATFQLCYIILFIMHTDKKNKMKMLGLLFVVFAVVGVIVAGSLQ 128
Query: 129 IVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYXXXXXXXXXXXXXAY 188
I + +R FVG LSC +L+SMFASPLF+INLVI+TKSVEFMPFY Y
Sbjct: 129 IPDQLTRWYFVGFLSCGSLVSMFASPLFVINLVIRTKSVEFMPFYLSLSTFLMSASFLLY 188
Query: 189 GIMNWDPFIYVPNGIGTILGIVQLALYFNYKETS-GEESRDPLIVSY 234
G+ N D F+Y PNGIGTILGIVQLALY Y S EE+++PLIVSY
Sbjct: 189 GLFNSDAFVYTPNGIGTILGIVQLALYCYYHRNSIEEETKEPLIVSY 235
|
|
| UNIPROTKB|A2WR31 SWEET2A "Bidirectional sugar transporter SWEET2a" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5JJY5 SWEET2A "Bidirectional sugar transporter SWEET2a" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B8A833 SWEET2B "Bidirectional sugar transporter SWEET2b" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5N8J1 SWEET2B "Bidirectional sugar transporter SWEET2b" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8RZQ8 SWEET1A "Bidirectional sugar transporter SWEET1a" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2026997 SWEET1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B8AYH1 SWEET1B "Bidirectional sugar transporter SWEET1b" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q60EC2 SWEET1B "Bidirectional sugar transporter SWEET1b" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2123426 SWEET7 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 235 | |||
| pfam03083 | 87 | pfam03083, MtN3_slv, Sugar efflux transporter for | 1e-16 | |
| pfam03083 | 87 | pfam03083, MtN3_slv, Sugar efflux transporter for | 9e-16 |
| >gnl|CDD|202529 pfam03083, MtN3_slv, Sugar efflux transporter for intercellular exchange | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-16
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 137 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPF 196
+GLL +++F SPL I+ VI+TKSVE MPF L+ L ++ +L YG++ D +
Sbjct: 1 FLLGLLCVVFSVAVFLSPLSILRKVIKTKSVEGMPFLPFLAGLLSASLWLLYGLLKKDGY 60
Query: 197 IYVPNGIGTILGIVQLALYFNYK 219
I +PNG+G +LG + L L+ Y
Sbjct: 61 IIIPNGVGCVLGTIYLILFIIYP 83
|
This family includes proteins such as drosophila saliva, MtN3 involved in root nodule development and a protein involved in activation and expression of recombination activation genes (RAGs). Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This family contains a region of two transmembrane helices that is found in two copies in most members of the family. This family also contains specific sugar efflux transporters that are essential for the maintenance of animal blood glucose levels, plant nectar production, and plant seed and pollen development. In many organisims it meditaes gluose transport; in Arabidopsis it is necessary for pollen viability; and two of the rice homologues are specifically exploited by bacterial pathogens for virulence by means of direct binding of a bacterial effector to the SWEET promoter. Length = 87 |
| >gnl|CDD|202529 pfam03083, MtN3_slv, Sugar efflux transporter for intercellular exchange | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 235 | |||
| KOG1623 | 243 | consensus Multitransmembrane protein [General func | 100.0 | |
| PF03083 | 87 | MtN3_slv: Sugar efflux transporter for intercellul | 99.87 | |
| PF03083 | 87 | MtN3_slv: Sugar efflux transporter for intercellul | 99.83 | |
| KOG1623 | 243 | consensus Multitransmembrane protein [General func | 99.47 | |
| COG4095 | 89 | Uncharacterized conserved protein [Function unknow | 99.3 | |
| COG4095 | 89 | Uncharacterized conserved protein [Function unknow | 99.29 | |
| TIGR00951 | 220 | 2A43 Lysosomal Cystine Transporter. | 98.76 | |
| PF04193 | 61 | PQ-loop: PQ loop repeat | 98.03 | |
| PF04193 | 61 | PQ-loop: PQ loop repeat | 97.99 | |
| KOG3211 | 230 | consensus Predicted endoplasmic reticulum membrane | 97.78 | |
| KOG2913 | 260 | consensus Predicted membrane protein [Function unk | 97.15 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 96.72 | |
| TIGR00951 | 220 | 2A43 Lysosomal Cystine Transporter. | 96.08 | |
| smart00679 | 32 | CTNS Repeated motif present between transmembrane | 94.86 | |
| PF03650 | 119 | MPC: Uncharacterised protein family (UPF0041); Int | 93.86 | |
| smart00679 | 32 | CTNS Repeated motif present between transmembrane | 93.53 | |
| PHA02246 | 192 | hypothetical protein | 91.55 | |
| PF03650 | 119 | MPC: Uncharacterised protein family (UPF0041); Int | 91.24 | |
| KOG1589 | 118 | consensus Uncharacterized conserved protein [Funct | 90.61 | |
| PF10688 | 163 | Imp-YgjV: Bacterial inner membrane protein; InterP | 89.8 | |
| KOG2913 | 260 | consensus Predicted membrane protein [Function unk | 87.52 | |
| KOG1589 | 118 | consensus Uncharacterized conserved protein [Funct | 85.3 | |
| PHA02246 | 192 | hypothetical protein | 81.63 |
| >KOG1623 consensus Multitransmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=318.65 Aligned_cols=210 Identities=45% Similarity=0.766 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHhcCCcccCCceEEEeechhhhhHH
Q 026671 10 LTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQ 89 (235)
Q Consensus 10 ~~~~~~~~g~~~~~~t~~~~~Sp~p~i~~i~k~ks~~~~s~~p~~~~~~n~~~W~~YG~~~l~~~~~~i~~~N~~g~~l~ 89 (235)
+....+.+|.+|+++|+.+|++|+|+++||+|+||+|+.+..||+++.+||.+|+.|| .+.+++..++.+|++|++++
T Consensus 2 ~~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie 79 (243)
T KOG1623|consen 2 GNVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIE 79 (243)
T ss_pred cchHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999 56664688999999999999
Q ss_pred HHHHhhhhhcccchhHHHHHH-HHHHHHHHHHHhhhhheeeecCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhhcCccc
Q 026671 90 LVYIILFITYTEKDKKVRMLG-LLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVE 168 (235)
Q Consensus 90 ~~y~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~si~~~~sPl~~i~~vi~tks~~ 168 (235)
++|+..|+.|+++|+...... ..... +...++++....++++.+.+.+|.+|++++++||+|||..+++++|+||+|
T Consensus 80 ~~Yi~~f~~ya~~k~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE 157 (243)
T KOG1623|consen 80 TVYISIFLYYAPKKKTVKIVLALVLGV--IGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVE 157 (243)
T ss_pred HHHHHHHheecCchheeEeeehHHHHH--HHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCcee
Confidence 999999999999987332221 11111 111222333446778888999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHhHHHHHhhhcccCCceEEechhHHHHHHHHHhhheeEecCCCC
Q 026671 169 FMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSG 223 (235)
Q Consensus 169 ~~~~~~~~~~~~n~~lW~~Yg~~~~d~~i~~~N~~g~~l~~~ql~l~~~y~~~~~ 223 (235)
.||++++++.++++..|++||++.+|.++.+||++|+.++.+|+.+|+.|++++.
T Consensus 158 ~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~ 212 (243)
T KOG1623|consen 158 YMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTE 212 (243)
T ss_pred eechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcc
Confidence 9999999999999999999999999999999999999999999999999998763
|
|
| >PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) [] | Back alignment and domain information |
|---|
| >PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) [] | Back alignment and domain information |
|---|
| >KOG1623 consensus Multitransmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG4095 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG4095 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00951 2A43 Lysosomal Cystine Transporter | Back alignment and domain information |
|---|
| >PF04193 PQ-loop: PQ loop repeat | Back alignment and domain information |
|---|
| >PF04193 PQ-loop: PQ loop repeat | Back alignment and domain information |
|---|
| >KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2913 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00951 2A43 Lysosomal Cystine Transporter | Back alignment and domain information |
|---|
| >smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins | Back alignment and domain information |
|---|
| >PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function | Back alignment and domain information |
|---|
| >smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins | Back alignment and domain information |
|---|
| >PHA02246 hypothetical protein | Back alignment and domain information |
|---|
| >PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function | Back alignment and domain information |
|---|
| >KOG1589 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins | Back alignment and domain information |
|---|
| >KOG2913 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1589 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PHA02246 hypothetical protein | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 235 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 5e-04
Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 52/172 (30%)
Query: 36 FRRIIRNHSTEEFSGLPYVYALLNCLITM---WYGTPLVSADN---ILVTT-----VNSI 84
RR++++ PY NCL+ + + + IL+TT + +
Sbjct: 234 LRRLLKSK--------PYE----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 85 GAA--FQLVYIILFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQI--VNPFSRQMFVG 140
AA + +T T + + LLL + + ++ NP +
Sbjct: 282 SAATTTHISLDHHSMTLTPDE----VKSLLLKYLDC--RPQDLPREVLTTNPRRLSIIAE 335
Query: 141 LLS-------------CAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTF 179
+ C L ++ S + L + E+ + LS F
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIES--SLNVL----EPAEYRKMFDRLSVF 381
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00