BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026672
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 247 bits (630), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 169/235 (71%), Gaps = 7/235 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD------SAGGP 173
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L D +AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 174 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 228
+ + +LP ++ LL+MD++L + E V++ A + + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQE 238
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 246 bits (628), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 169/235 (71%), Gaps = 7/235 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD------SAGGP 173
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L D +AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 174 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 228
+ + +LP ++ LL+MDA+L + E V++ A + + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 238
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 168/235 (71%), Gaps = 7/235 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD------SAGGP 173
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L D +AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 174 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 228
+ + +LP ++ LL+MDA+L + E V++ A + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQE 238
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 216 bits (551), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 152/231 (65%), Gaps = 7/231 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G KV+AAVYGPRE+ K
Sbjct: 8 LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E +L H+ PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
+++LQAD GTR A I AA+LAL DAGIPM+D+V +C+AG ++ +L D+ G D
Sbjct: 127 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 225
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEK 237
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 213 bits (541), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 7/231 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ IDIF
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 225
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEK 237
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 149/231 (64%), Gaps = 7/231 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G RLDGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAGIPMRD+V +CSAG + +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 225
V V I+P + +TLLQMD L F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEK 237
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 149/231 (64%), Gaps = 7/231 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGRR E+R++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ +D+F
Sbjct: 68 QRPDTAVLRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAG+PMRD+V +C+AG ++ +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 225
V V I+P + +TLLQMD L F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEK 237
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 210 bits (534), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 150/231 (64%), Gaps = 7/231 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 225
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEK 237
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 209 bits (532), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 148/229 (64%), Gaps = 7/229 (3%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+S +GLRLDGR+P EMR L+ + G + +ADGSA E+G K++AAVYGPRE+ + +Q
Sbjct: 8 LISEDGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQK 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+A+VR Y+MA FS +R R P DRRS EIS + ++ +E I T PR+ IDIFV+
Sbjct: 68 PDRAVVRFRYNMAPFSVDERKR-PGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVT 176
VLQAD GTR A I+AA++AL DAGI MRD+V +C+AG + +L D G DV
Sbjct: 127 VLQADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVP 186
Query: 177 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 225
+ ++P K+TLLQMD + F+ ++LA +GCK V R L E
Sbjct: 187 LAMMPKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALKEK 235
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 150/231 (64%), Gaps = 7/231 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ +K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 225
V V I+P + +TLLQMD L F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEK 237
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 200 bits (509), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 147/229 (64%), Gaps = 7/229 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLRLDGR+P EMR ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A+
Sbjct: 14 GLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAV 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL L PR+ ID+F++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
GTR + AA++AL DAGIPMRD++ + G + +L D G D+ V ++P
Sbjct: 133 AGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMP 192
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 230
+L +V LLQ++ + F +++A +G + + N +E + +L+
Sbjct: 193 SLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKEAIRSKYAELK 241
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 197 bits (501), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 146/232 (62%), Gaps = 9/232 (3%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 75
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 76 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 134
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGIL 180
D G+R + AA+LAL DAGIPMRD++ + G + +L D G D+ + ++
Sbjct: 135 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMM 194
Query: 181 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECR 232
P+L++VTL Q++ + + F LA++G + N RE L +K +E +
Sbjct: 195 PSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREAL--KSKYVEFK 244
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 197 bits (501), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 149/233 (63%), Gaps = 7/233 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
+R DGR P ++R +R E+G ++ ADGSA+ E G T+VIAAVYGPRE + + D+A+
Sbjct: 23 AIRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAI 82
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+RC Y MA FST +R + P RR E+S VIR+ +EA +++ L PR+ ID++++VLQ+D
Sbjct: 83 IRCRYHMAPFSTAER-KTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSD 141
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
GGTR+A I AA+LAL DAGI MRD+V + G ++ +L D+ D+ V + P
Sbjct: 142 GGTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAP 201
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRRG 234
+LDKV LLQ++ L + F ++LA +G + + N +E L + ++ G
Sbjct: 202 SLDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVSVEEG 254
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 136/220 (61%), Gaps = 7/220 (3%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR E+R L+ E G + +ADGS+ E G K++ AVYGPRE Q + Q D+A++
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y+MA FS +R R P DRRS EIS + + + ++ PRS ID+F++VL+A+G
Sbjct: 76 RCRYNMAPFSVEERKR-PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILPT 182
GTR A I AA++AL DAGIPMRD+V +C+AG + +L D G DV V ILP
Sbjct: 135 GTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPR 194
Query: 183 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
++TLLQ D L FE + LA+EGC + +E L
Sbjct: 195 TREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEAL 234
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 141/233 (60%), Gaps = 7/233 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ E G + +ADGSA E G K+I VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R R P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAVVKARYNMAAFSVDERKR-PGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A + AAT+AL DAGIPMRD+V C+AG ++ +L D+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEAD 187
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227
+ + I+P ++ LLQMD + + F + + IE K ++ R LL K
Sbjct: 188 IPMAIMPKTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQRNALLNKYK 240
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+ ++ +GLRLDGRR E+R ++ E+G +++ADGS E G K++ V+GPRE +
Sbjct: 8 LTLITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRS 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q +D A++R Y+MA+FS DR R P RRS EIS V R+ E I+ L P++ IDIF
Sbjct: 68 QRADSAVIRYRYNMASFSVEDRAR-PGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
V+VLQAD GTR+A INA+++AL DAGIPM+ ++TSC+ G ++ +L D+ G D
Sbjct: 127 VEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
V + T D ++TL+QMD L + + ++L +GCK + + VL
Sbjct: 187 FPVAM--TQDGEITLIQMDGNLTPDEIKQGLELVKKGCKEILEIQQAVL 233
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 135/221 (61%), Gaps = 6/221 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G ++ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
G TR A + AA+LAL DAGI MRD+V S G ++ T +L D G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
L + TLLQ+D + + + LA++G + V R+ L
Sbjct: 192 NLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDAL 232
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 134/221 (60%), Gaps = 6/221 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
G TR A + AA+LAL DAG+ MRD+V S G ++ +L D G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
L + TLLQ+D + F + + LAI+G + V R+ L
Sbjct: 192 NLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDAL 232
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 7/233 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ + G + +ADGSA E G K++ VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R ++P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAIVKARYNMAAFSVDER-KRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A + AAT+AL DAG+PMRD+V C+AG ++ +L D+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEAD 187
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227
+ + I+P + L+QMD + + M + E K ++ RE LL K
Sbjct: 188 IPIAIMPKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQREALLNKYK 240
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR P +MR+++ ++G V+ ADGSAV G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
G TR A + AA+LAL DAGI MRD+V S G ++ T +L D+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
L + TLLQ+D F + + LA++G + V RE L
Sbjct: 192 NLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREAL 232
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 141/226 (62%), Gaps = 10/226 (4%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLRLDGR+ E+R ++ E + +ADGS EMG KVIAAV+GPREV + Q +A
Sbjct: 14 DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y+MA FS +R R P DRRS EIS V ++ EA I+ L PRS IDIFV+VLQA
Sbjct: 74 IIRYRYNMAPFSVEERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGIL 180
D G+R+AC+NAA++AL DAG+PM+ ++TS + G + +L D+ G D+ L
Sbjct: 133 DAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFL 192
Query: 181 ---PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLL 223
++ + LLQMD ++ + + ++LA +G + RE +L
Sbjct: 193 IRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAIL 238
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 138/228 (60%), Gaps = 7/228 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M + G R DGR E R++ + G + ADGS+ E G+ K++ V+GPR+V K
Sbjct: 8 MVLMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHM 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D ++R Y M FS G+R + P RR EIS VI++ +E ++ PR+ +D+F
Sbjct: 68 SDTDTGILRVRYHMEPFSVGER-KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQADGGTR A + AA++AL DAGIPMRD+V + +AG + T +L D AG D
Sbjct: 127 IEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
+ +G +P L+K+TLLQ+D L ++ +Q+ ++GCK V ++ L
Sbjct: 187 MPIGYMPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLVYELQKKAL 234
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 180 bits (457), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR+ E+R ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A
Sbjct: 14 GLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKAS 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL +L PR+ IDIF++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
GTR + AA++AL DAGIPMRD++ + G + + +L D G D+ + +LP
Sbjct: 133 AGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLP 192
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECR 232
+L +V LLQ++ + + F +LA +G ++ +E L K LE +
Sbjct: 193 SLGQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEAL--KNKYLEYK 241
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 134/221 (60%), Gaps = 6/221 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E I+ PRS+ID+FV++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
G TR A + AA+LAL DAGI MRD+V S G ++ T +L D G D+ +G +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
L + TLLQ+D + F + LA+ G + V R+ L
Sbjct: 192 NLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDAL 232
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 131/220 (59%), Gaps = 7/220 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E S+
Sbjct: 1 MSIISEHGFRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYE-SKASK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R +P+GDR+STEIS ++ + E+ ILT PRSQIDIF
Sbjct: 60 RLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGG------PD 174
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G + + P++D P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETDLLPR 179
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 214
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCADV 219
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 132/221 (59%), Gaps = 6/221 (2%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E +L PRS+ID+F++++QAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP------LLDSAGGPDVTVGILP 181
G TR A + AA+LAL DAGI MRD+V S G ++ L D+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
L + LLQ+D F + LA++G + V R+ L
Sbjct: 192 NLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDAL 232
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 132/220 (60%), Gaps = 7/220 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E ++ S+
Sbjct: 1 MNIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS-SK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R + +GDR+STEIS ++ + E+ ILT PRSQ+DIF
Sbjct: 60 RIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGG------PD 174
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G ++ P++D P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPR 179
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 214
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADV 219
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 170 bits (430), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR P ++R +R ++G + ADGSA+ E G T+V+AAVYGPRE + + D+A
Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+R Y MA FST +R + P RR E+S V+R+ +E +L PR+ ID+F++VLQA
Sbjct: 74 ALRVRYHMAPFSTDER-KSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST------PLLDSAGGPDVTVGIL 180
DGGTR+A + AA+LAL DAGIPMR +V + G + L D G D+ V
Sbjct: 133 DGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAA 192
Query: 181 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
P + ++TLLQ++ L F + +A+ V +E +
Sbjct: 193 PDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAI 234
>sp|A0RXU1|ECX1_CENSY Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum
(strain A) GN=CENSYa_1536 PE=3 SV=1
Length = 243
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 142/221 (64%), Gaps = 7/221 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ +E R++ G + A+GSA E G+ K++A ++GPR+V K ++ +
Sbjct: 15 GIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+RC Y M+ FS +R +KP RR EIS VI++ +E ++ PR+ +D+F++VLQAD
Sbjct: 75 LRCRYHMSPFSVSER-KKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
GG+R A + AA++AL DAGIPMRD+V++C+AG + T +L D AG D+ VG +P
Sbjct: 134 GGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMP 193
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 222
LD+VTL+Q+D L + + +AI+GCK V ++ L
Sbjct: 194 NLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQVYEVQKKAL 234
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 167 bits (422), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 134/232 (57%), Gaps = 5/232 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E +S EGLR DGRR EMR + IG +GSA E+GNTKV+ V GP E KS+
Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D+ V E ++A+FST D ++ K DRR L ++ T E I T L PRSQI ++
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD-----SAGGPDV 175
+ VLQ DG ++CINA TLAL DAGIP++D V +AG + S LLD + +
Sbjct: 124 LHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSWL 183
Query: 176 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227
TV +L + KV +Q++ + + E VM +AI G + + N ++ + ++ K
Sbjct: 184 TVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQSAK 235
>sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1
Length = 246
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 138/235 (58%), Gaps = 7/235 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGGPD---- 174
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD+ +
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 175 -VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 228
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E L ++ ++
Sbjct: 184 TVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQK 238
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 19/238 (7%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S +G+R +G ++R + A G V++A GSA E GNTK+I +VYGP+E + + +
Sbjct: 32 SRQGVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMK 87
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ C++ +A FS R +G ++S + +++ + H PRSQID+ V VL
Sbjct: 88 TGRLVCDFRLAPFSCVKRGAWIQGSEER-DLSATLMESLRPGVCLHRYPRSQIDVNVMVL 146
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGGPD---------- 174
+ DG + + A++AL DAGI M DIV C+ + L+D + +
Sbjct: 147 ENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGD 206
Query: 175 ----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 228
VT+ +LP L++V+ L D ++ +T + M+ ++GC + +++ L K+
Sbjct: 207 NQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKK 264
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 122/242 (50%), Gaps = 14/242 (5%)
Query: 1 MEFVSPEGLRLDGRR---PTEMRQLRAEIGNVAKADGSAVFEMGN--TKVIAAVYGPREV 55
+ +S EG + GRR P+E R + G +++A GSA E G+ TKV+ AV+GPRE
Sbjct: 19 LYVLSEEGGKAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRER 78
Query: 56 QNKSQQMSDQALVRCEYSMANFST-GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPR 114
++ + + C+ A FS G + L +++++E + PR
Sbjct: 79 GMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPR 138
Query: 115 SQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------- 167
+++ ++V VL+ G A ++ A+LAL DAGI M D+ C LL
Sbjct: 139 AEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDE 198
Query: 168 -DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENT 226
++ G +++ +LPTL++V+ L + + E+ ++L +EGC+ + + + L++ T
Sbjct: 199 EEAGSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVLHQCLVKAT 258
Query: 227 KQ 228
K+
Sbjct: 259 KR 260
>sp|Q8BTW3|EXOS6_MOUSE Exosome complex component MTR3 OS=Mus musculus GN=Exosc6 PE=1 SV=1
Length = 273
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 29/235 (12%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKG----DRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + C++ A FS G R R P+G DR E+ L +++ +E + PR+Q++
Sbjct: 91 ALRGRLLCDFRRAPFS-GRRRRAPQGGGGEDR---ELGLALQEALEPAVRLGRYPRAQLE 146
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS---------AGYLNSTPLLDS 169
+ +L+ G +A + AA LAL DAG+ M D+V C L+ T L +
Sbjct: 147 VSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEE 206
Query: 170 AGGPDVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLL 223
+TV ++P L++V LL T ++ D ++L +EGC+ + +++ L+
Sbjct: 207 HSAAGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVLQQCLV 261
>sp|B2V900|PNP_SULSY Polyribonucleotide nucleotidyltransferase OS=Sulfurihydrogenibium
sp. (strain YO3AOP1) GN=pnp PE=3 SV=1
Length = 703
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 13/230 (5%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY--GPREVQNKSQQMSD 64
E +R+DGR+P E+R + ++G + GSA+F G T+ V P E Q + +
Sbjct: 309 ENIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAG 368
Query: 65 QALVR--CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ L R Y+ FSTG+ RR + + +E I + I +
Sbjct: 369 ETLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSEEEFPYVIRVVSD 428
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP--------LLDSAGGPD 174
+L+++G T A + +LAL DAG+PM+ V + G + S L D D
Sbjct: 429 ILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSDILGDEDHLGD 488
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 224
+ + T D VT +QMD K+ T E ++Q A+E + NYI +++ +
Sbjct: 489 MDFKVAGTRDGVTSIQMDIKVKGLTRE-ILQKALEQAREGRNYILDLMYQ 537
>sp|B1VVV6|RNPH_STRGG Ribonuclease PH OS=Streptomyces griseus subsp. griseus (strain JCM
4626 / NBRC 13350) GN=rph PE=3 SV=1
Length = 245
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM ST GDR +R G R + EIS +I +++ A I + + I + VL
Sbjct: 62 AEYSMLPRSTNTRGDREAVRGKIGGR-THEISRLIGRSLRAVIDCKALGENTIVLDCDVL 120
Query: 125 QADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLD 168
QADGGTR+A I A +AL DA P+ D V + S G ++ TPLLD
Sbjct: 121 QADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLD 177
>sp|A5G3S1|RNPH_GEOUR Ribonuclease PH OS=Geobacter uraniireducens (strain Rf4) GN=rph
PE=3 SV=1
Length = 238
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 34/242 (14%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R DGR +R+++ + A+GS + E G+TKVI A+V G P ++ K
Sbjct: 1 MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGT---- 56
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM +T R K K R+ EI +I +++ A + +L+ + I
Sbjct: 57 -GWVTAEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLID 115
Query: 121 VQVLQADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLL-- 167
V+QADGGTR+A I A +AL D A +P+++ V + S G ++ TPLL
Sbjct: 116 CDVIQADGGTRTASITGAYVALYDALDGLVKKGELAAMPLKEAVAAVSVGIVDGTPLLDL 175
Query: 168 ----DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQ-LAIEGCKAVANYIRE 220
DS+ D+ ++ + ++ +Q A+ T E D M+ LAI G K + +E
Sbjct: 176 NYVEDSSAEVDMNF-VMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIKRLFQIQKE 234
Query: 221 VL 222
L
Sbjct: 235 AL 236
>sp|Q5RKV6|EXOS6_HUMAN Exosome complex component MTR3 OS=Homo sapiens GN=EXOSC6 PE=1 SV=1
Length = 272
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 22/231 (9%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + C++ A F+ G R R P G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCS---------AGYLNSTPLLDSAGGP 173
+L+ G +A + AA LAL DAG+ M D+V C L+ T L +
Sbjct: 150 LLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAA 209
Query: 174 DVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLL 223
+TV ++P L++V LL T ++ + ++L +EGC+ + +++ L+
Sbjct: 210 GLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQSLV 260
>sp|B8I1A8|RNPH_CLOCE Ribonuclease PH OS=Clostridium cellulolyticum (strain ATCC 35319 /
DSM 5812 / JCM 6584 / H10) GN=rph PE=3 SV=1
Length = 240
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 26/241 (10%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR T++R +R + A+GS + E+G+TKVI + ++ S + V
Sbjct: 2 LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIP-PFKKDSGEGWV 60
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K K + RS+EI +I +++ + L+ I I V+
Sbjct: 61 TAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVI 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLD----S 169
QADGGTR+A I + +AL DA +P+ V + S G +N LLD
Sbjct: 121 QADGGTRTASITGSYVALVDACRTLVKKGLISKMPVTGTVAATSVGIVNGEELLDLCYIE 180
Query: 170 AGGPDVTVGILPTLDKVTLLQMDAKLPTNTF-----EDVMQLAIEGCKAVANYIREVLLE 224
+V + ++ T DK +++ A ++F + ++ LA G + EVL +
Sbjct: 181 DSNAEVDMNVIKT-DKGEFIEIQATGEKSSFSKKQLDQLLNLAESGIHELIKAQNEVLWK 239
Query: 225 N 225
+
Sbjct: 240 D 240
>sp|Q9NQT4|EXOS5_HUMAN Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1
Length = 235
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA----LVRCEYSM 74
+R E +++ DGSA F G+T V+A VYGP EV+ S+++ ++A ++R + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK-VSKEIFNKATLEVILRPKIGL 86
Query: 75 ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSAC 134
+ R R +IR T EA +L L PR+ I + +QV+ G + C
Sbjct: 87 PGVAEKSRER-------------LIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 133
Query: 135 INAATLALQDAGIPMRDI 152
+NAA +AL DAG+PMR +
Sbjct: 134 LNAACMALVDAGVPMRAL 151
>sp|Q6AEK9|RNPH_LEIXX Ribonuclease PH OS=Leifsonia xyli subsp. xyli (strain CTCB07)
GN=rph PE=3 SV=1
Length = 251
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 26/188 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R DGR ++R + E KA+GSA+ G T+V+ PR + K +
Sbjct: 5 IRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASFTNGVPRWMSGKGR---- 60
Query: 65 QALVRCEYSMANFSTGDRMRKP--KG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M ST DRM + KG R+ EIS +I +++ A + + + I +
Sbjct: 61 -GWVTAEYAMLPRSTNDRMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTIVLD 119
Query: 121 VQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL DA P+ D V++ S G ++ +P+L
Sbjct: 120 CDVLQADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIVDGSPML 179
Query: 168 DSAGGPDV 175
D A DV
Sbjct: 180 DLAYTEDV 187
>sp|Q9S2H7|RNPH_STRCO Ribonuclease PH OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rph PE=3 SV=1
Length = 245
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 22/178 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGR P ++R + E G A+GS + G+TKV+ A+V E + ++ S +
Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVT---EGVPRWRKGSGEGW 59
Query: 68 VRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY+M A + GDR K + R+ EIS +I +++ A I + + + + V
Sbjct: 60 VTAEYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDV 119
Query: 124 LQADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLD 168
LQADGGTR+A I A +AL DA P+ V++ S G ++ TPLLD
Sbjct: 120 LQADGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLD 177
>sp|Q82D17|RNPH_STRAW Ribonuclease PH OS=Streptomyces avermitilis (strain ATCC 31267 /
DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=rph PE=3 SV=1
Length = 244
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 111/244 (45%), Gaps = 28/244 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM A + GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDSAGG 172
ADGGTR+A I A +AL DA P+ V++ S G + PLLD
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLDLCYE 181
Query: 173 PDVT----VGILPTLDKVTLLQMDAKLPTNTFE-----DVMQLAIEGCKAVANYIREVLL 223
DV + ++ T D +++ F+ ++ LA+ GC +A R L
Sbjct: 182 EDVKADTDMNVVCTGDG-RFVEVQGTAEAEPFDRKELNALLDLAVSGCDELAVIQRAALE 240
Query: 224 ENTK 227
T+
Sbjct: 241 ATTR 244
>sp|Q9CRA8|EXOS5_MOUSE Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1
Length = 235
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 25/157 (15%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA----LVRCEYSM 74
+R E +++ DGSA F G+T V+A VYGP EV+ S+++ ++A ++R + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK-VSKEIFNKATLEVILRPKIGL 86
Query: 75 ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSAC 134
+ R R ++R T EA +L L PR+ I + +QV+ G + C
Sbjct: 87 PGVAEKSRER-------------LVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACC 133
Query: 135 INAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAG 171
+NAA +AL DAG+PMR + + T LDS G
Sbjct: 134 LNAACMALVDAGVPMRAL-------FCGVTCALDSDG 163
>sp|B9EBG0|PNP_MACCJ Polyribonucleotide nucleotidyltransferase OS=Macrococcus
caseolyticus (strain JCSC5402) GN=pnp PE=3 SV=1
Length = 703
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 18/235 (7%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIA----AVYGPREVQNK 58
++ E +R DGRRP E+R L +E+G + + GS +F G T+ ++ G ++ +
Sbjct: 308 LITEEKVRPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALSVATLGALGEHQIID- 366
Query: 59 SQQMSDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
+ ++ Y+ NFS G+ +R P G R +L R ++ P +
Sbjct: 367 GLGVEEEKRYMHHYNFPNFSVGETGPIRAP-GRREIGHGALGERALLQVIPDEKEFPYT- 424
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLLDSAGG 172
I + +VL+++G + A I +TLAL DAG+P++ V + G + N T L D G
Sbjct: 425 IRVVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTKDENYTILSDIQGM 484
Query: 173 P----DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLL 223
D+ + T + +T +QMD K+ T ED+++ A+E + +I E +L
Sbjct: 485 EDALGDMDFKVAGTKEGITAIQMDIKINGLT-EDILREALEQARVGRLHIMEHML 538
>sp|A5D2S6|PNP_PELTS Polyribonucleotide nucleotidyltransferase OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=pnp PE=3 SV=1
Length = 734
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 26/240 (10%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ- 61
++ EGLR+DGR E+R + E+G + + GS +F G T++++ V + S++
Sbjct: 319 MITEEGLRIDGRALNEVRPISVEVGVLPRPHGSGLFTRGQTQILSVVT----LGTVSEEQ 374
Query: 62 ------MSDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMP 113
+ + Y+ +STG+ +R P RR + + + A I
Sbjct: 375 ILDGLGVEESKRFMHHYNFPPYSTGETRPLRSP--GRREIGHGALAERALAAVIPGEEEF 432
Query: 114 RSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLLDS 169
I I + L+++G T + +TLAL DAG+P+ V + G + N T L D
Sbjct: 433 PYTIRIVSEALESNGSTSMGSVCGSTLALMDAGVPISAPVAGVAMGLIKEGDNFTVLTDI 492
Query: 170 AGGP----DVTVGILPTLDKVTLLQMDAKLPTNT---FEDVMQLAIEGCKAVANYIREVL 222
G D+ + T +T LQMD K+P T FE + A EG + N + EVL
Sbjct: 493 QGFEDHLGDMDFKVAGTAKGITALQMDIKIPGITREVFEKALAQAYEGRMHILNKMLEVL 552
>sp|B5YFY8|RNPH_THEYD Ribonuclease PH OS=Thermodesulfovibrio yellowstonii (strain ATCC
51303 / DSM 11347 / YP87) GN=rph PE=3 SV=1
Length = 236
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 22/186 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-MSDQ-- 65
+R DGR+ E+R ++ E + ADGS + E+GNT+VI ++NK + DQ
Sbjct: 1 MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTA----SIENKVPPFLKDQKK 56
Query: 66 ALVRCEYSMANFSTGDRM-RKPKGDR---RSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M ST RM R+ R R+ EI +I +T+ A + + I I
Sbjct: 57 GWITAEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGGPDVTVGIL- 180
V++ADGGTR+A I +AL +A + + +AG + P+ DS ++VGI+
Sbjct: 117 DVIEADGGTRTASITGGYIALVEA------VKKAMNAGMITENPIKDSIAA--ISVGIVL 168
Query: 181 --PTLD 184
P LD
Sbjct: 169 GEPRLD 174
>sp|C1DTW6|PNP_SULAA Polyribonucleotide nucleotidyltransferase OS=Sulfurihydrogenibium
azorense (strain Az-Fu1 / DSM 15241 / OCM 825) GN=pnp
PE=3 SV=1
Length = 707
Score = 74.7 bits (182), Expect = 5e-13, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 13/230 (5%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY--GPREVQNKSQQMSD 64
EG+R+DGR+P E+R + ++G + GSA+F G T+ V E Q + +
Sbjct: 311 EGIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEGQIEESIEAG 370
Query: 65 QALVR--CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + R Y+ FSTG+ RR + + +E I I +
Sbjct: 371 EVMKRFMLHYNFPPFSTGEAKPPRATSRREIGHGNLAERALEPLIPPEEEFPYAIRVVSD 430
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--------STPLLDSAGGPD 174
+L+++G T A + +LAL DAG+PM+ V + G + S L D D
Sbjct: 431 ILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKAEDKFVILSDILGDEDHLGD 490
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 224
+ + T D VT +QMD K+ T +++++ A++ + NYI +++ +
Sbjct: 491 MDFKVAGTRDGVTSIQMDIKVKGLT-KEILEKALQQARDGRNYILDLMYQ 539
>sp|Q6A759|RNPH_PROAC Ribonuclease PH OS=Propionibacterium acnes (strain KPA171202 / DSM
16379) GN=rph PE=3 SV=2
Length = 244
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 28/238 (11%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 62
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 63 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 122
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLL----- 167
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+L
Sbjct: 123 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYK 182
Query: 168 -DSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGCKAVANYIREVL 222
DS D+ V + D V + P N +++ LA GC + E L
Sbjct: 183 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 240
>sp|A3DCH7|PNP_CLOTH Polyribonucleotide nucleotidyltransferase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=pnp PE=3
SV=1
Length = 700
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 21/234 (8%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV----YGPREVQN 57
E++ EG R+DGRR E+R L AE+G + + GS +F G T+V+++V G ++ +
Sbjct: 304 EYILEEGRRVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQILD 363
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+ + Y+ FS G+ RR + + +E I + I
Sbjct: 364 GIDTEETKRYMH-HYNFPGFSVGEAKSSRGPGRREIGHGALAERALEPVIPSEEEFPYTI 422
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG-------------YLNST 164
+ +VL ++G T + +TLAL DAG+P++ V SAG +++
Sbjct: 423 RVVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDENNPDRFVTFMDIQ 482
Query: 165 PLLDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 218
+ D G D+ + T D +T +Q+D K+ T E++++ A E + YI
Sbjct: 483 GIEDFFG--DMDFKVAGTKDGITAIQVDIKIDGLT-EEIIKQAFELTRKGRLYI 533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,074,099
Number of Sequences: 539616
Number of extensions: 3186128
Number of successful extensions: 10817
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 7766
Number of HSP's gapped (non-prelim): 1690
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)