Query 026672
Match_columns 235
No_of_seqs 132 out of 1294
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 19:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nn6_B Exosome complex exonucl 100.0 5.3E-55 1.8E-59 368.2 28.4 232 1-232 8-246 (249)
2 2wnr_B Probable exosome comple 100.0 7.4E-55 2.5E-59 365.6 28.9 226 1-227 8-239 (240)
3 2po1_A Probable exosome comple 100.0 3.6E-54 1.2E-58 363.2 28.7 229 1-230 8-242 (249)
4 2wp8_B Exosome complex compone 100.0 7.7E-54 2.6E-58 360.6 26.4 231 1-231 4-241 (246)
5 2je6_B RRP41, exosome complex 100.0 2E-53 6.8E-58 358.9 28.0 227 2-229 13-245 (250)
6 3m7n_D Probable exosome comple 100.0 2.3E-53 7.8E-58 359.2 27.0 226 2-229 10-244 (258)
7 2nn6_F MTR3, exosome component 100.0 5.6E-51 1.9E-55 347.8 20.9 229 2-231 19-268 (272)
8 2nn6_D Exosome complex exonucl 100.0 9.6E-49 3.3E-53 327.8 25.9 213 5-227 12-235 (237)
9 3dd6_A Ribonuclease PH; exorib 100.0 5.4E-48 1.9E-52 326.0 26.1 220 6-227 8-252 (255)
10 3b4t_A Ribonuclease PH; RNAse, 100.0 7.6E-48 2.6E-52 326.8 23.7 221 6-228 3-248 (262)
11 1oys_A Ribonuclease PH; transf 100.0 4.6E-48 1.6E-52 325.2 21.2 218 9-228 1-243 (245)
12 1udn_A Ribonuclease PH, RNAse 100.0 7E-47 2.4E-51 319.6 26.1 214 9-224 1-238 (255)
13 1r6l_A Ribonuclease PH; beta-a 100.0 8.4E-47 2.9E-51 316.5 26.0 213 9-223 2-238 (239)
14 3hkm_A OS03G0854200 protein; R 100.0 6.8E-47 2.3E-51 317.6 24.5 212 7-230 2-238 (246)
15 2po1_B Probable exosome comple 100.0 2.5E-45 8.7E-50 313.7 26.4 216 5-225 22-275 (277)
16 3m7n_G Probable exosome comple 100.0 2.5E-45 8.6E-50 310.8 25.1 212 5-220 18-258 (259)
17 2wnr_A Probable exosome comple 100.0 6.3E-45 2.1E-49 310.4 27.0 215 4-223 19-270 (271)
18 2je6_A RRP42, exosome complex 100.0 4.2E-45 1.5E-49 312.3 25.2 215 4-223 24-276 (277)
19 3gme_A Polyribonucleotide nucl 100.0 6.2E-46 2.1E-50 339.5 21.0 224 2-226 307-545 (549)
20 2nn6_C Exosome complex exonucl 100.0 3E-45 1E-49 313.4 20.5 218 4-225 19-275 (278)
21 4aid_A Polyribonucleotide nucl 100.0 1.9E-44 6.6E-49 338.5 24.5 224 2-226 323-561 (726)
22 3u1k_A Polyribonucleotide nucl 100.0 6.5E-44 2.2E-48 332.0 23.2 223 2-226 311-558 (630)
23 2nn6_A Polymyositis/scleroderm 100.0 6.1E-43 2.1E-47 307.5 24.8 220 5-231 35-295 (358)
24 1e3p_A Guanosine pentaphosphat 100.0 2.3E-43 7.8E-48 333.6 23.5 221 2-225 348-589 (757)
25 2nn6_E Exosome complex exonucl 100.0 1.7E-43 5.7E-48 306.1 20.0 222 5-230 32-296 (305)
26 2wp8_A Exosome complex compone 100.0 1.3E-42 4.6E-47 300.6 23.4 219 5-230 19-291 (305)
27 3cdi_A Polynucleotide phosphor 100.0 1.7E-42 5.9E-47 326.6 24.4 224 2-228 313-553 (723)
28 3krn_A Protein C14A4.5, confir 100.0 8.1E-45 2.8E-49 301.0 -0.3 203 16-230 2-213 (222)
29 3u1k_A Polyribonucleotide nucl 100.0 3.5E-34 1.2E-38 266.7 24.5 202 18-227 13-229 (630)
30 3gme_A Polyribonucleotide nucl 100.0 3E-30 1E-34 236.0 24.3 201 19-227 13-228 (549)
31 4aid_A Polyribonucleotide nucl 100.0 2.3E-29 7.7E-34 236.6 24.4 202 18-227 26-242 (726)
32 1e3p_A Guanosine pentaphosphat 100.0 3E-29 1E-33 237.3 24.2 203 19-227 36-269 (757)
33 3cdi_A Polynucleotide phosphor 100.0 2.8E-29 9.6E-34 236.8 23.4 200 20-227 20-234 (723)
34 2k9i_A Plasmid PRN1, complete 60.7 9.1 0.00031 22.8 3.4 36 194-229 15-50 (55)
35 2kel_A SVTR protein, uncharact 50.8 8.2 0.00028 23.8 1.9 36 194-229 19-54 (56)
36 2cpg_A REPA protein, transcrip 36.2 23 0.00077 20.0 2.2 35 194-228 8-42 (45)
37 1xpp_A TA1416, DNA-directed RN 32.9 1.3E+02 0.0044 21.2 6.3 45 184-228 62-106 (115)
38 2ba3_A NIKA; dimer, bacterial 32.3 29 0.001 20.3 2.3 30 194-223 21-50 (51)
39 1baz_A ARC repressor; transcri 32.0 44 0.0015 20.0 3.1 36 194-229 13-48 (53)
40 2gpe_A Bifunctional protein PU 29.6 33 0.0011 20.1 2.2 39 194-232 9-47 (52)
41 2k5j_A Uncharacterized protein 25.0 70 0.0024 20.9 3.3 36 194-229 15-50 (80)
42 1nla_A Transcriptional repress 21.0 1.2E+02 0.0042 19.0 3.7 36 194-229 13-48 (64)
43 4h62_V Mediator of RNA polymer 20.5 88 0.003 16.0 2.4 16 194-209 8-23 (31)
No 1
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=5.3e-55 Score=368.23 Aligned_cols=232 Identities=50% Similarity=0.872 Sum_probs=214.2
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCcccccc-ccCCCCceEEEEEEeeCCCCc
Q 026672 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK-SQQMSDQALVRCEYSMANFST 79 (235)
Q Consensus 1 ~e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~-~~~~~~~~~l~v~~~~~~~~~ 79 (235)
||||+++|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+++.+ .+..|+++.|+|+|+++|+++
T Consensus 8 ~~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~ 87 (249)
T 2nn6_B 8 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFST 87 (249)
T ss_dssp ---CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTS
T ss_pred hhhcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcc
Confidence 7899999999999999999999999999999999999999999999999999876432 235789999999999999999
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEEEE
Q 026672 80 GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159 (235)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s~~ 159 (235)
+++++++++++++++++++|+++|+++|+++.||+|.|+|+++||++|||+++|++||+++||.|+||||+++|+++|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs~g 167 (249)
T 2nn6_B 88 GERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAG 167 (249)
T ss_dssp SSCCCTTTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEEEE
T ss_pred cccccCCCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEEEE
Confidence 98877788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcceee------cCCCCeEEEEEcCCCCcEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026672 160 YLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECR 232 (235)
Q Consensus 160 ~~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~~ 232 (235)
++++.+++| +.++.+++|+++++.++|+.+++.|+++.+++.++++.|.++|+++++.++++|+++.++....
T Consensus 168 ~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~~ 246 (249)
T 2nn6_B 168 FVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASIL 246 (249)
T ss_dssp EETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EECCeEEECCChHHhccCCcEEEEEEECCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999 4567889998877889999999999999999999999999999999999999999998876543
No 2
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=7.4e-55 Score=365.56 Aligned_cols=226 Identities=43% Similarity=0.740 Sum_probs=205.4
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCcc
Q 026672 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (235)
Q Consensus 1 ~e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~ 80 (235)
||+++++|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+..++....|++|.|+++|+++|++++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~ 87 (240)
T 2wnr_B 8 DQLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVE 87 (240)
T ss_dssp -------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSS
T ss_pred eEeecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcC
Confidence 78999999999999999999999999999999999999999999999999999877666677999999999999999998
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEEEEe
Q 026672 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (235)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s~~~ 160 (235)
+++ ++.+++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||.|+||||+++|+++|+++
T Consensus 88 ~~~-~~~~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs~g~ 166 (240)
T 2wnr_B 88 ERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGK 166 (240)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred Ccc-CCCCChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEEEEE
Confidence 876 5678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcceee------cCCCCeEEEEEcCCCCcEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 161 LNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227 (235)
Q Consensus 161 ~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~ 227 (235)
+++.+++| +.++++++|++++..++|+.++++|.++.+++.++++.|.++|+++.+.++++|+++.+
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 239 (240)
T 2wnr_B 167 VGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKRYG 239 (240)
T ss_dssp SSSSEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ECCEEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999 34677899988788999999999999999999999999999999999999999988754
No 3
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=3.6e-54 Score=363.18 Aligned_cols=229 Identities=47% Similarity=0.767 Sum_probs=214.8
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCcc
Q 026672 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (235)
Q Consensus 1 ~e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~ 80 (235)
||+++++|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.|..++....|++|.|+|+|+++|++++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~ 87 (249)
T 2po1_A 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVE 87 (249)
T ss_dssp -CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSS
T ss_pred eEEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccc
Confidence 68999999999999999999999999999999999999999999999999999877666678999999999999999998
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEEEEe
Q 026672 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (235)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s~~~ 160 (235)
+++ .+.+++++++++++|+++|+++|+++.||+|.|+|+++||++|||+++|+++|+++||.|+||||+++|+++|+++
T Consensus 88 ~~~-~~~~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 166 (249)
T 2po1_A 88 ERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGK 166 (249)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred ccc-CCCCCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEE
Confidence 765 4468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcceee------cCCCCeEEEEEcCCCCcEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026672 161 LNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 230 (235)
Q Consensus 161 ~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~ 230 (235)
+++.+++| +.++.+++|+++++.++|+++|+.|.++++++.++++.|.++++++++.++++++++.+++.
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 242 (249)
T 2po1_A 167 IEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA 242 (249)
T ss_dssp ETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCEEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999 45677899988788899999999999999999999999999999999999999999887654
No 4
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-54 Score=360.60 Aligned_cols=231 Identities=37% Similarity=0.601 Sum_probs=199.7
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCcCCC-CeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCc
Q 026672 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFST 79 (235)
Q Consensus 1 ~e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a-~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~ 79 (235)
||||+++|.|+|||+++|+|++++++|+++++ +|||+|++|+|+|+|+|+||.+++++....|+++.|+|+|+++|+++
T Consensus 4 ~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~ 83 (246)
T 2wp8_B 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSK 83 (246)
T ss_dssp CCSSCTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC----
T ss_pred hhhhcccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccc
Confidence 79999999999999999999999999999999 99999999999999999999886555566799999999999999999
Q ss_pred cccCCC-CCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEEE
Q 026672 80 GDRMRK-PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (235)
Q Consensus 80 ~~~~~~-~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s~ 158 (235)
+++.++ +++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||.|+||||+++|+++++
T Consensus 84 ~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~avs~ 163 (246)
T 2wp8_B 84 FERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISV 163 (246)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEE
T ss_pred ccccccCCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeEEEE
Confidence 987655 6778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcceee-----cCCCCeEEEEEcCCCCcEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026672 159 GYLNSTPLLD-----SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLEC 231 (235)
Q Consensus 159 ~~~~~~~l~D-----~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~ 231 (235)
|++++.+++| ..++.+++|++++..++|++++++|+++++++.++++.|.++++++.+.++++++++.++...
T Consensus 164 g~~~~~~l~Dp~~~Ee~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~ 241 (246)
T 2wp8_B 164 GLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKRVS 241 (246)
T ss_dssp EEETTEEESSCCHHHHHHSEEEEEEEETTSSCEEEEEECSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred EEECCEEEECCCchhhccCceEEEEEeCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999 223456788777889999999999999999999999999999999999999999999876543
No 5
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=2e-53 Score=358.88 Aligned_cols=227 Identities=41% Similarity=0.754 Sum_probs=213.4
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccc
Q 026672 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (235)
Q Consensus 2 e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~ 81 (235)
|||+++|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+.+++....|+++.|+|+|++.|+++++
T Consensus 13 ~~~l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~ 92 (250)
T 2je6_B 13 KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDE 92 (250)
T ss_dssp CSBCTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSS
T ss_pred ceecCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCC
Confidence 78999999999999999999999999999999999999999999999999988766666779999999999999999998
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEEEEee
Q 026672 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (235)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s~~~~ 161 (235)
++ .+++++++++++++|+++|+++++++.||+|.|+|+++||++||++++|+++|+++||.++|||++++|++++++++
T Consensus 93 ~~-~g~~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsvg~~ 171 (250)
T 2je6_B 93 RK-NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA 171 (250)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEEE
T ss_pred cc-CCCCChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEEE
Confidence 76 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceee------cCCCCeEEEEEcCCCCcEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 162 NSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 229 (235)
Q Consensus 162 ~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 229 (235)
++.+++| +.++.+++|+++++.++|+++|+.|.++++++.++++.|.++++++++.++++++++.+++
T Consensus 172 ~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~ 245 (250)
T 2je6_B 172 DGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEF 245 (250)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC--
T ss_pred CCEEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 3467789998877789999999999999999999999999999999999999999887665
No 6
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=2.3e-53 Score=359.25 Aligned_cols=226 Identities=42% Similarity=0.717 Sum_probs=210.4
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccc
Q 026672 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (235)
Q Consensus 2 e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~ 81 (235)
++|. +|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.|++++....|++|.|+|+|+++|+++.+
T Consensus 10 ~~i~-~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~ 88 (258)
T 3m7n_D 10 KLIV-DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEE 88 (258)
T ss_dssp CSEE-TTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSS
T ss_pred HHHh-cCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCccccc
Confidence 4556 999999999999999999999999999999999999999999999998877666789999999999999999987
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEEEEee
Q 026672 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (235)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s~~~~ 161 (235)
++ ++.+++++++++++|+++|+++|+++.||+|.|+|+++||++|||+++|++||+++||.|+||||+++|++++++++
T Consensus 89 r~-~~~~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsvg~i 167 (258)
T 3m7n_D 89 RK-RPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA 167 (258)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEEEEE
T ss_pred cc-CCCCCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEE
Confidence 64 45789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceee------cCCCCeEEEEEcCCC---CcEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 162 NSTPLLD------SAGGPDVTVGILPTL---DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 229 (235)
Q Consensus 162 ~~~~l~D------~~~~~~~~v~~~~~~---~~i~~~~~~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 229 (235)
++.+++| +.++.+++|++++.. ++|+++|++|.++++++.++++.|.++|+++++.++++|+++.++.
T Consensus 168 ~~~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~ 244 (258)
T 3m7n_D 168 DGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEV 244 (258)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999 345778899876667 8999999999999999999999999999999999999999987653
No 7
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=5.6e-51 Score=347.81 Aligned_cols=229 Identities=28% Similarity=0.484 Sum_probs=199.9
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccC-----------CCCceEEEE
Q 026672 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-----------MSDQALVRC 70 (235)
Q Consensus 2 e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~-----------~~~~~~l~v 70 (235)
+|+.+++.|+|||.++|+|++++++|+++++||||+|++|+|+|+|+|+||.+.++..+. +++++.++|
T Consensus 19 ~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 98 (272)
T 2nn6_F 19 LYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLC 98 (272)
T ss_dssp ----------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEE
T ss_pred ccccccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEE
Confidence 567789999999999999999999999999999999999999999999999886543221 578899999
Q ss_pred EEeeCCCCccccCCCCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCcc
Q 026672 71 EYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMR 150 (235)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~ 150 (235)
+|.+.|+++++++ .+++++++++++++|+++|+++++++.||+|.|+|+++||++||++++|++||+++||.++||||+
T Consensus 99 ~~~~~p~a~~~~~-~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~~ 177 (272)
T 2nn6_F 99 DFRRAPFAGRRRR-APPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMY 177 (272)
T ss_dssp EEEECTTSSSSCC-CSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBS
T ss_pred EEEecCCCcCCcc-CCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccc
Confidence 9999999998865 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEe---ecCcceee------cCCCCeEEEEEcCCCCcEEEEEEeecCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q 026672 151 DIVTSCSAGY---LNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDAKLPT-NTFEDVMQLAIEGCKAVANYIRE 220 (235)
Q Consensus 151 ~~~~a~s~~~---~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g~~~~-~~~~~~l~~a~~~~~~i~~~i~~ 220 (235)
++++++++++ .++.+++| +.++.+++|++++..++|+++|++|.++. +++.++++.|.++++++++++++
T Consensus 178 ~~v~avsvg~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 257 (272)
T 2nn6_F 178 DLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQ 257 (272)
T ss_dssp SCCEEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECCSSCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEeeccCCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 88899999 33567899988888999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 026672 221 VLLENTKQLEC 231 (235)
Q Consensus 221 ~l~~~~~~~~~ 231 (235)
+++++.+++..
T Consensus 258 ~l~~~~~~~~~ 268 (272)
T 2nn6_F 258 SLVRAARRRGA 268 (272)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhhcc
Confidence 99999887664
No 8
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=9.6e-49 Score=327.78 Aligned_cols=213 Identities=26% Similarity=0.387 Sum_probs=180.4
Q ss_pred CCCCCCCCCCCCC----CCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCcc
Q 026672 5 SPEGLRLDGRRPT----EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (235)
Q Consensus 5 ~~~~~R~DgR~~~----e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~ 80 (235)
+.+|.|+|||+++ |+|++++++|++++++|||+|++|+|+|+|+|+||.++++ ....|+++.++++|. |++
T Consensus 12 ~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~-~~~~~~~g~l~~~~~--p~~-- 86 (237)
T 2nn6_D 12 KIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKV-SKEIFNKATLEVILR--PKI-- 86 (237)
T ss_dssp ---------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC-------CCEEEEEEEE--CSS--
T ss_pred CccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccc-cccCCCcEEEEEEec--CCC--
Confidence 3578999999999 9999999999999999999999999999999999987644 345688999998875 442
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEEEEe
Q 026672 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (235)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s~~~ 160 (235)
|++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||.|+||||+++|+++++|+
T Consensus 87 -----g~~~~~e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 161 (237)
T 2nn6_D 87 -----GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACAL 161 (237)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEEEEEEE
T ss_pred -----CCCCccHHHHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeeeEEEEE
Confidence 467789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-cCcceee------cCCCCeEEEEEcCCCCcEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 161 L-NSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227 (235)
Q Consensus 161 ~-~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~ 227 (235)
+ ++.+++| ....++++|+++++.++|+.+++.|.++.+++.++++.|.++++++++.++++++++.+
T Consensus 162 ~~~~~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 235 (237)
T 2nn6_D 162 DSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYS 235 (237)
T ss_dssp CTTCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ecCCcEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 7889999 34568899998887779999999999999999999999999999999999999998864
No 9
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=5.4e-48 Score=325.96 Aligned_cols=220 Identities=26% Similarity=0.362 Sum_probs=198.0
Q ss_pred CCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCC-
Q 026672 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR- 84 (235)
Q Consensus 6 ~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~- 84 (235)
.+..|.|||+++|+|++++++|++++++|||+|++|+|+|+|+|++|.+. ++....|++|.|+|+|++.|+++.++.+
T Consensus 8 ~~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~-p~~~~~~~~g~l~v~~~~~P~a~~~~~~R 86 (255)
T 3dd6_A 8 HHHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERV-PPFMRGEGKGWVTAEYAMIPRATEQRTIR 86 (255)
T ss_dssp ---CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCC-CGGGTTSSCCEEEEEEEECTTSSSSCCCC
T ss_pred ccccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCC-CCCCCCCCceEEEEEEEECCCcccccccc
Confidence 35689999999999999999999999999999999999999999997653 2345578999999999999999988653
Q ss_pred ---CCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhC-----------CCCcc
Q 026672 85 ---KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMR 150 (235)
Q Consensus 85 ---~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~a-----------gip~~ 150 (235)
.|++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||.++ +|||+
T Consensus 87 e~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iPl~ 166 (255)
T 3dd6_A 87 ESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVK 166 (255)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBS
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCCcc
Confidence 2789999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ceeEEEEEEeecCcce-ee------cCCCCeEEEEEcCCCCcEEEEEEee---cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 151 DIVTSCSAGYLNSTPL-LD------SAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIRE 220 (235)
Q Consensus 151 ~~~~a~s~~~~~~~~l-~D------~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~~~~~l~~a~~~~~~i~~~i~~ 220 (235)
++|+++++++++++++ +| +.++.+++|+ ++..++|+++|+.| .++++++.++++.|.++++++++++++
T Consensus 167 ~~v~avsvg~i~g~~vllDpt~~Ee~~~~~~l~Va-~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 245 (255)
T 3dd6_A 167 DYLAATSVGIVEEQGVVLDLNYAEDSKADVDMNVI-MTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKE 245 (255)
T ss_dssp SCEEEEEEEEETTTEEEESCCHHHHHTEEEEEEEE-EETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECCEEEEeCCCHHHHhhcCceEEEE-EcCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 99 3455678885 56788999999975 599999999999999999999999999
Q ss_pred HHHHHHH
Q 026672 221 VLLENTK 227 (235)
Q Consensus 221 ~l~~~~~ 227 (235)
++++...
T Consensus 246 ~l~~~~~ 252 (255)
T 3dd6_A 246 ALGDIVS 252 (255)
T ss_dssp HHGGGGG
T ss_pred HHHHHHh
Confidence 9987654
No 10
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.6e-48 Score=326.78 Aligned_cols=221 Identities=27% Similarity=0.368 Sum_probs=197.8
Q ss_pred CCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCCC
Q 026672 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (235)
Q Consensus 6 ~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~ 85 (235)
..|+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.. +....++++.|+|+|++.|++++++.++
T Consensus 3 ~~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~v~~~~~p~a~~~~~~R 81 (262)
T 3b4t_A 3 HVSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-RWRKATGLGWLTAEYAMLPSATHSRSDR 81 (262)
T ss_dssp --CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC-----CCSCCEEEEEEEECGGGSSSCCCC
T ss_pred CCCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCC-CccCCCCceEEEEEEEeCCCcccccccc
Confidence 468999999999999999999999999999999999999999999976532 2223478999999999999999876543
Q ss_pred ----CCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhC------------CCCc
Q 026672 86 ----PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA------------GIPM 149 (235)
Q Consensus 86 ----~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~a------------gip~ 149 (235)
|++++++++++++|+++|+++|+++.||+|+|+|+++||++|||+++|++||+++||.++ +|||
T Consensus 82 e~~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~ 161 (262)
T 3b4t_A 82 ESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPL 161 (262)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCB
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCccccCCcc
Confidence 689999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cceeEEEEEEeecCcceee------cCCCCeEEEEEcCCCCcEEEEEEee---cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 150 RDIVTSCSAGYLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIRE 220 (235)
Q Consensus 150 ~~~~~a~s~~~~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~~~~~l~~a~~~~~~i~~~i~~ 220 (235)
+++|++++++++++.+++| +.++.+++|++ +..++|+++++.| .++++++.++++.|.++++++++.+++
T Consensus 162 ~~~v~avsvg~~~g~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 240 (262)
T 3b4t_A 162 SCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVA-TDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRD 240 (262)
T ss_dssp CSCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeEEEEEEECCEEEECCCHHHHhccCceEEEEE-cCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 34567788865 5578999999975 699999999999999999999999999
Q ss_pred HHHHHHHH
Q 026672 221 VLLENTKQ 228 (235)
Q Consensus 221 ~l~~~~~~ 228 (235)
+++++.++
T Consensus 241 ~l~~~~~~ 248 (262)
T 3b4t_A 241 ALALPYPG 248 (262)
T ss_dssp HHTSCCSS
T ss_pred HHhcchhc
Confidence 99876554
No 11
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=4.6e-48 Score=325.21 Aligned_cols=218 Identities=28% Similarity=0.358 Sum_probs=177.0
Q ss_pred CCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCC----
Q 026672 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (235)
Q Consensus 9 ~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~---- 84 (235)
+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.. +....+++|+|+++|+++|++++++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~ 79 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVP-PFLRGGGKGWITAEYSMLPQATNQQTIQESS 79 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCC-GGGTTSCCCEEEEEEEC--------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccC-CccCCCCceEEEEEEEeCCCcCccccccccc
Confidence 499999999999999999999999999999999999999999977542 223458899999999999999987643
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCC-----------CCcccee
Q 026672 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (235)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~ag-----------ip~~~~~ 153 (235)
.|++++++++++++|+++|+++|+++.||++.|+|+++||++|||+++|++||+++||.|+| +||+++|
T Consensus 80 ~G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v 159 (245)
T 1oys_A 80 KGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFL 159 (245)
T ss_dssp -----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCE
T ss_pred CCCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCCCce
Confidence 36789999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEeecCcce-ee------cCCCCeEEEEEcCCCCcEEEEEEee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 154 TSCSAGYLNSTPL-LD------SAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLL 223 (235)
Q Consensus 154 ~a~s~~~~~~~~l-~D------~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~ 223 (235)
+++|++++++.++ +| +.++.+++|++ +..++|+.+|+.| .++++++.++++.|.++++++++.++++|+
T Consensus 160 ~avs~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 238 (245)
T 1oys_A 160 AAISVGIDKEQGILLDLNYEEDSSAEVDMNVIM-TGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 (245)
T ss_dssp EEEEEEEETTTEEEESCCHHHHHHEEEEEEEEE-ETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEECCEEEEecCCHHHHhcCCCcEEEEE-cCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888 99 23456788865 5678999999975 699999999999999999999999999999
Q ss_pred HHHHH
Q 026672 224 ENTKQ 228 (235)
Q Consensus 224 ~~~~~ 228 (235)
++.+.
T Consensus 239 ~~~~~ 243 (245)
T 1oys_A 239 DSLPE 243 (245)
T ss_dssp -----
T ss_pred hhhhh
Confidence 88653
No 12
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=7e-47 Score=319.62 Aligned_cols=214 Identities=26% Similarity=0.362 Sum_probs=194.7
Q ss_pred CCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCC----
Q 026672 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (235)
Q Consensus 9 ~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~---- 84 (235)
+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|++|.+. ++....|++|.|+|+|.+.|+++.++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~-p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~ 79 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENV-PNWLKGKGQGWITAEYSMLPRATQQRTIRESV 79 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCC-CGGGTTSSCCEEEEEEEECSCCTTSCCCCSST
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcC-CCCCCCCCceEEEEEEEcCCCccccccccccC
Confidence 49999999999999999999999999999999999999999997754 2233457899999999999999987643
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCC-----------CCcccee
Q 026672 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (235)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~ag-----------ip~~~~~ 153 (235)
.|++++++++++++|+++|+++|+++.||+|.|+|+++||++|||+++|++||+++||.|+| |||+++|
T Consensus 80 ~G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v 159 (255)
T 1udn_A 80 QGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFV 159 (255)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCccCce
Confidence 36789999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEeecCcceee------cCCCCeEEEEEcCCCCcEEEEEEee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 154 TSCSAGYLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLLE 224 (235)
Q Consensus 154 ~a~s~~~~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~ 224 (235)
+++|++++++.+++| +.++.+++|++ +..++++.+++.| .++++++.++++.|.++++++++++++++++
T Consensus 160 ~avsvg~~~g~~llDpt~~Ee~~~~~~l~va~-~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 160 AAVSVGIVNDRILLDLNFEEDSAAQVDMNVVG-TGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp EEEEEEEETTEEEESCCHHHHHTCSEEEEEEE-ETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred eEEEEEEECCEEEECCCHHHHhhCCCCEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 34677888875 5577999999874 6999999999999999999999999998765
No 13
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=8.4e-47 Score=316.46 Aligned_cols=213 Identities=31% Similarity=0.424 Sum_probs=191.6
Q ss_pred CCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCCC---
Q 026672 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK--- 85 (235)
Q Consensus 9 ~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~--- 85 (235)
.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.. +....|++|.|+|+|.+.|+++.++.++
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~ 80 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVP-RFLKGQGQGWLTAEYGMLPRSTGERNQREAS 80 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCS-SCCC---CCEEEEEEEECTTSSSSCCCCHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccC-CccCCCCcEEEEEEEEeCCCccccccccccC
Confidence 399999999999999999999999999999999999999999977542 2233478999999999999999876433
Q ss_pred -CCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCC-----------CCcccee
Q 026672 86 -PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (235)
Q Consensus 86 -~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~ag-----------ip~~~~~ 153 (235)
|++++++++++++|+++|+++++++.||++.|+|+++||++|||+++||+||+++||.||| |||+++|
T Consensus 81 ~G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~ 160 (239)
T 1r6l_A 81 RGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMV 160 (239)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCE
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCccCce
Confidence 6889999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEeecCcceee------cCCCCeEEEEEcCCCCcEEEEEEee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 154 TSCSAGYLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLL 223 (235)
Q Consensus 154 ~a~s~~~~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~ 223 (235)
+++|++++++++++| +.++.+++|++ +..++++.+++.| .++++++.++++.|.++++++++.++++++
T Consensus 161 ~avs~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 238 (239)
T 1r6l_A 161 AAVSVGIYQGVPVLDLDYLEDSAAETDLNVVM-TDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 (239)
T ss_dssp EEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-ETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCEEEECCCHHHHhcCCceEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 34567888876 5577999999875 699999999999999999999999999875
No 14
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=6.8e-47 Score=317.57 Aligned_cols=212 Identities=21% Similarity=0.375 Sum_probs=175.4
Q ss_pred CCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCCCC
Q 026672 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86 (235)
Q Consensus 7 ~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~ 86 (235)
+|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+.++ ..+.|+++.+++++. |+ .|
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~-~~~~~~~~~~~~~~~--P~-------~g 71 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTR-KGENPEKASIEVVWK--PM-------TG 71 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCC-TTSCSSSCEEEEEEE--CS-------SS
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCCc-ccCCCccEEEEEEeC--CC-------CC
Confidence 789999999999999999999999999999999999999999999986543 345688888877654 42 24
Q ss_pred CCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEEEEee-cCcc
Q 026672 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL-NSTP 165 (235)
Q Consensus 87 ~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s~~~~-~~~~ 165 (235)
++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||.++||||+++|++++++++ ++.+
T Consensus 72 ~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~ 151 (246)
T 3hkm_A 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEV 151 (246)
T ss_dssp CCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCE
T ss_pred CCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEE
Confidence 567788999999999999999999999999999999999999999999999999999999999999999999998 7899
Q ss_pred eee------cCCCCeEEEEEcCCCCcEEEEEE------------------eecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 166 LLD------SAGGPDVTVGILPTLDKVTLLQM------------------DAKLPTNTFEDVMQLAIEGCKAVANYIREV 221 (235)
Q Consensus 166 l~D------~~~~~~~~v~~~~~~~~i~~~~~------------------~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~ 221 (235)
++| +.++.+++|++..+ .++.+++ .|.|+++++.++++.|.++++++.++++++
T Consensus 152 llDpt~~Ee~~~~~~~~va~~~~--~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 229 (246)
T 3hkm_A 152 ILDTNKAEEQQLKSFAHLVFPNS--RKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTT 229 (246)
T ss_dssp EESCCHHHHTTCSEEEEEEEEC----------------------CCCEEEEECEEHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCHHHHhcCCeeEEEEEeCC--ceEEEeecccccccccccceeeeeccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 34567788866443 3554444 578999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 026672 222 LLENTKQLE 230 (235)
Q Consensus 222 l~~~~~~~~ 230 (235)
|+++.++-+
T Consensus 230 l~~~~~~~~ 238 (246)
T 3hkm_A 230 LQKQAPGDV 238 (246)
T ss_dssp TC-------
T ss_pred HHhhhhchh
Confidence 998887654
No 15
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=2.5e-45 Score=313.66 Aligned_cols=216 Identities=20% Similarity=0.284 Sum_probs=195.3
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEE-CCccccccccCCCCceEEEEEEeeCCCCccccC
Q 026672 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (235)
Q Consensus 5 ~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 83 (235)
+++|+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+ +|.++. ...|++|.|+++|+++|++++.+
T Consensus 22 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~---~~~~~~g~l~~~~~~~p~a~~~~- 97 (277)
T 2po1_B 22 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPF---PDTPNMGVMTTNVELVPLASPTF- 97 (277)
T ss_dssp HHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECCC---TTCTTSCEEEEEEEECGGGCTTC-
T ss_pred HhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCCC---CCCCCceEEEEEEEeCCCccccc-
Confidence 4689999999999999999999999999999999999999999999 666542 35689999999999999998764
Q ss_pred CCCCCCchhHHHHHHHHHHHHh--hhhcCCC---Cc---cEEEEEEEEEecCCchHHHHHHHHHHHHHhCC---------
Q 026672 84 RKPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAG--------- 146 (235)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~--~i~~~~~---p~---~~i~I~v~il~~dG~~l~a~i~aa~~AL~~ag--------- 146 (235)
+.|++++++++++++|+++|++ +|+++.| |+ |.|+|+++||++|||+++|+++|+++||.|+|
T Consensus 98 ~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~ 177 (277)
T 2po1_B 98 EPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEE 177 (277)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTT
T ss_pred cCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCC
Confidence 3567899999999999999998 5888876 54 59999999999999999999999999999999
Q ss_pred ------------CCccceeEEEEEEeecCcceee------cCCCCeEEEEEcCCCCcEEEEEEe--ecCCHHHHHHHHHH
Q 026672 147 ------------IPMRDIVTSCSAGYLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQL 206 (235)
Q Consensus 147 ------------ip~~~~~~a~s~~~~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~--g~~~~~~~~~~l~~ 206 (235)
+||+++|+++|++++++.+++| +.++++++|++ +..++|+.+++. +.++.+++.++++.
T Consensus 178 ~~~~~~~~~~~~ipl~~~~~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~lq~~g~~~~~~~~l~~~l~~ 256 (277)
T 2po1_B 178 TGEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITT-DETGHISAVQKSEGGAFKLEEVMYAVET 256 (277)
T ss_dssp TCCEEEEEEEEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTSCEEEEEEESSCCCCHHHHHHHHHH
T ss_pred CceeecccccccccccCceEEEEEEEECCEEEeCCCHHHHhhCCCcEEEEE-cCCCCEEEEEccCCCCCCHHHHHHHHHH
Confidence 8999999999999999999999 34667888876 457889999998 57999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026672 207 AIEGCKAVANYIREVLLEN 225 (235)
Q Consensus 207 a~~~~~~i~~~i~~~l~~~ 225 (235)
|.++++++++.++++|++.
T Consensus 257 A~~~~~~l~~~~~~~l~~~ 275 (277)
T 2po1_B 257 AFKKAEEIRKLILEAVEKA 275 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999875
No 16
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=2.5e-45 Score=310.82 Aligned_cols=212 Identities=21% Similarity=0.309 Sum_probs=188.9
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCC
Q 026672 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (235)
Q Consensus 5 ~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 84 (235)
+++|+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+++.. .+....|++|.++|+|++.|++++++ +
T Consensus 18 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~--~p~~~~~~~g~l~v~~~~~p~a~~~~-~ 94 (259)
T 3m7n_G 18 LRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPG--EPYPDTPDRGVIIVNAELVPLASPTF-E 94 (259)
T ss_dssp HHTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEE--CCCSSCTTSCEEEEEEECCTTSCTTC-C
T ss_pred HhcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEeccc--CCCCCCCCceEEEEEEEeCCcccccc-c
Confidence 35899999999999999999999999999999999999999999996332 12234688999999999999999876 3
Q ss_pred CCCCCchhHHHHHHHHHHHHh--hhhcCCC---Cc---cEEEEEEEEEecCCchHHHHHHHHHHHHHhCCC---------
Q 026672 85 KPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGI--------- 147 (235)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~--~i~~~~~---p~---~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agi--------- 147 (235)
+|++++++++++++|+++|++ +++++.| |+ |.|+|+++||++|||+++||++|+++||.+++|
T Consensus 95 ~g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~~~ 174 (259)
T 3m7n_G 95 PGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGE 174 (259)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSS
T ss_pred CCCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecCCc
Confidence 578999999999999999999 7888876 64 799999999999999999999999999999999
Q ss_pred ----CccceeEEEEEEeecCcceee------cCCCCeEEEEEcCCCCcEEEEEEee--cCCHHHHHHHHHHHHHHHHHHH
Q 026672 148 ----PMRDIVTSCSAGYLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQLAIEGCKAVA 215 (235)
Q Consensus 148 ----p~~~~~~a~s~~~~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g--~~~~~~~~~~l~~a~~~~~~i~ 215 (235)
||+++|+++|++++++.+++| +.++.+++|++. ..++++++++.| .++++++.++++.|.+++++++
T Consensus 175 ~~~lp~~~~~~avtvg~~~~~~l~Dpt~~Ee~~~~~~l~va~~-~~g~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~l~ 253 (259)
T 3m7n_G 175 DYLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTD-KDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLR 253 (259)
T ss_dssp CEECCBCCCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEEC-TTSCEEEEEEESSCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccCceeEEEEEEECCEEEECCCHHHHhhCCCcEEEEEe-CCCcEEEEECCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999 345678888764 467999999974 7999999999999999999999
Q ss_pred HHHHH
Q 026672 216 NYIRE 220 (235)
Q Consensus 216 ~~i~~ 220 (235)
+.+++
T Consensus 254 ~~~~~ 258 (259)
T 3m7n_G 254 EKFKE 258 (259)
T ss_dssp HTTC-
T ss_pred HHHhh
Confidence 98765
No 17
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6.3e-45 Score=310.37 Aligned_cols=215 Identities=20% Similarity=0.308 Sum_probs=193.1
Q ss_pred cCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEE-CCccccccccCCCCceEEEEEEeeCCCCcccc
Q 026672 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDR 82 (235)
Q Consensus 4 ~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 82 (235)
++++|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+ +|.++. ...|++|.|+|+|++.|++++++
T Consensus 19 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~---~~~~~~g~l~v~~~~~p~a~~~~ 95 (271)
T 2wnr_A 19 LINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPF---PDTPEMGVILTNSELLPMASPTF 95 (271)
T ss_dssp HHHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCC---TTCTTCCEEEEEEEECGGGCTTC
T ss_pred HHhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecCC---CCCCCceEEEEEEEeCCcccccc
Confidence 35689999999999999999999999999999999999999999999 665542 34689999999999999999874
Q ss_pred CCCCCCCchhHHHHHHHHHHHHh--hhhcCCC---Cc---cEEEEEEEEEecCCchHHHHHHHHHHHHHhCC--------
Q 026672 83 MRKPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAG-------- 146 (235)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~~l~~--~i~~~~~---p~---~~i~I~v~il~~dG~~l~a~i~aa~~AL~~ag-------- 146 (235)
+.|++++++++++++|+++|++ +++++.| |+ |.|+|+++||++|||+++|+++|+++||.++|
T Consensus 96 -~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~ 174 (271)
T 2wnr_A 96 -EPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVED 174 (271)
T ss_dssp -CCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEET
T ss_pred -cCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 4678899999999999999999 5777877 53 69999999999999999999999999999999
Q ss_pred ------------CCccceeEEEEEEeecCcceee------cCCCCeEEEEEcCCCCcEEEEEEee--cCCHHHHHHHHHH
Q 026672 147 ------------IPMRDIVTSCSAGYLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQL 206 (235)
Q Consensus 147 ------------ip~~~~~~a~s~~~~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g--~~~~~~~~~~l~~ 206 (235)
+||+++|+++|+|++++.+++| +.++.+++|++. ..++|+++++.| .++++++.++++.
T Consensus 175 ~~~~~~~~~~~~ip~~~~~~avt~g~~~~~~l~Dpt~~Ee~~~~~~l~va~~-~~~~i~~i~~~g~~~~~~~~l~~~l~~ 253 (271)
T 2wnr_A 175 GEVVINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVT-EEGSICAMQKGGEGPLTRDDVLKAVSI 253 (271)
T ss_dssp TEEEEEEEEEEECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEEE-TTSCEEEEEEESSSCBCHHHHHHHHHH
T ss_pred CceeeccCcccccCccCCeEEEEEEEECCEEEeCCCHHHHhcCCCcEEEEEe-CCCCEEEEECCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999 345677888764 468899999984 7999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026672 207 AIEGCKAVANYIREVLL 223 (235)
Q Consensus 207 a~~~~~~i~~~i~~~l~ 223 (235)
|.++++++.+.++++++
T Consensus 254 a~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 254 AVEKVPQLIEYLDKSMT 270 (271)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998864
No 18
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=4.2e-45 Score=312.32 Aligned_cols=215 Identities=19% Similarity=0.231 Sum_probs=193.2
Q ss_pred cCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEE-CCccccccccCCCCceEEEEEEeeCCCCcccc
Q 026672 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDR 82 (235)
Q Consensus 4 ~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 82 (235)
.+++|.|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+ +|.++ ....|++|.|+|+|++.|++++++
T Consensus 24 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p---~~~~~~~g~l~v~~~~~p~a~~~~ 100 (277)
T 2je6_A 24 LFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP---YEDTPNQGNLIVNVELLPLAYETF 100 (277)
T ss_dssp TGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECC---CTTCTTCCEEEEEEEECTTSCTTC
T ss_pred HHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCC---CCCCCCccEEEEEEEeCCccCccc
Confidence 46689999999999999999999999999999999999999999999 55443 234689999999999999999875
Q ss_pred CCCCCCCchhHHHHHHHHHHHHh--hhhcCCC------CccEEEEEEEEEecCCchHHHHHHHHHHHHHhCC--------
Q 026672 83 MRKPKGDRRSTEISLVIRQTMEA--CILTHLM------PRSQIDIFVQVLQADGGTRSACINAATLALQDAG-------- 146 (235)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~~l~~--~i~~~~~------p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~ag-------- 146 (235)
+ .|++++++++++++|+++|++ +++++.| +.|.|+|+++||++|||+++|+++|+++||.++|
T Consensus 101 ~-~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~ 179 (277)
T 2je6_A 101 E-PGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHS 179 (277)
T ss_dssp C-CSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred c-cCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 3 578899999999999999999 4788887 3579999999999999999999999999999999
Q ss_pred -------------CCccceeEEEEEEeecCcceee------cCCCCeEEEEEcCCCCcEEEEEEe--ecCCHHHHHHHHH
Q 026672 147 -------------IPMRDIVTSCSAGYLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQ 205 (235)
Q Consensus 147 -------------ip~~~~~~a~s~~~~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~--g~~~~~~~~~~l~ 205 (235)
+||+++|+++|++++++.+++| +.++.+++|++ +..++|+++++. +.++++++.++++
T Consensus 180 ~~~~~~~~~~~~~ip~~~~~~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~ 258 (277)
T 2je6_A 180 NGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSY-TPDLKIVGIQKSGKGSMSLQDIDQAEN 258 (277)
T ss_dssp --CEEEEEEEEEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTCCEEEEEEESSSCEEHHHHHHHHH
T ss_pred CcceEeccCccccccccCCeEEEEEEEECCEEecCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999 34567888876 446899999998 4699999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026672 206 LAIEGCKAVANYIREVLL 223 (235)
Q Consensus 206 ~a~~~~~~i~~~i~~~l~ 223 (235)
.|.++++++++.++++++
T Consensus 259 ~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 259 TARSTAVKLLEELKKHLG 276 (277)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998863
No 19
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=6.2e-46 Score=339.48 Aligned_cols=224 Identities=20% Similarity=0.313 Sum_probs=190.2
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEE-ECCccccccccC--CCCceEEEEEEeeCCCC
Q 026672 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQ--MSDQALVRCEYSMANFS 78 (235)
Q Consensus 2 e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V-~gp~e~~~~~~~--~~~~~~l~v~~~~~~~~ 78 (235)
++|+++|.|+|||.++|+|++++++|+++++||||+|++|+|+|+|+| +||.++.++.+. .++++.+.++|.++||+
T Consensus 307 ~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~s 386 (549)
T 3gme_A 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYS 386 (549)
T ss_dssp HHHHHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCC
Confidence 468889999999999999999999999999999999999999999999 699776433222 34789999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHhhhh-cCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEE
Q 026672 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (235)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s 157 (235)
++++++++.+++++++++++++++|+++|+ .+.||++ |+|+++||++|||+++|++||+++||+||||||++++++++
T Consensus 387 t~e~~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs 465 (549)
T 3gme_A 387 VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 (549)
T ss_dssp TTCCCCSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEE
T ss_pred cCCcccCCCCChhHHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEEE
Confidence 999877788999999999999999999999 5789985 99999999999999999999999999999999999999999
Q ss_pred EEeecC----cceee----cCCCCeEEEEEcCCCCcEEEEEEeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 158 AGYLNS----TPLLD----SAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVLLENT 226 (235)
Q Consensus 158 ~~~~~~----~~l~D----~~~~~~~~v~~~~~~~~i~~~~~~g~---~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~ 226 (235)
+|++++ .+++| +...+++.+.+.++.+.++.+|++++ |+.+++.+++++|+++|.+|++.++++|.+..
T Consensus 466 ~Gli~~g~~~~iL~D~~~~Ed~~~d~d~~Va~t~~gitalqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~pr 545 (549)
T 3gme_A 466 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 545 (549)
T ss_dssp EEEEEETTEEEEEESCCHHHHHHSSEEEEEEECSSCEEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred EEEEcCCCceEEEecCChHHHccCCceEEEEecCCCeEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999975 57889 22223444444456677999998865 69999999999999999999999999987654
No 20
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3e-45 Score=313.37 Aligned_cols=218 Identities=23% Similarity=0.267 Sum_probs=192.9
Q ss_pred cCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccC
Q 026672 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (235)
Q Consensus 4 ~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 83 (235)
++++|+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|++|... +....|++|.|+|+|++.|++++++
T Consensus 19 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~--p~~~~~~~g~l~v~~~~~p~a~~~~- 95 (278)
T 2nn6_C 19 FLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAA--PSTDAPDKGYVVPNVDLPPLCSSRF- 95 (278)
T ss_dssp HHHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECC--CCSSSTTCCCCEEEEECCSSSCTTS-
T ss_pred HHhcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeec--CCCCCCCccEEEEEEEeCCccCccc-
Confidence 3478999999999999999999999999999999999999999999996642 2334578999999999999999876
Q ss_pred CCCCCCchhHHHHHHHHHHHHh--hhhcCCC------CccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCC--------
Q 026672 84 RKPKGDRRSTEISLVIRQTMEA--CILTHLM------PRSQIDIFVQVLQADGGTRSACINAATLALQDAGI-------- 147 (235)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~--~i~~~~~------p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agi-------- 147 (235)
++|++++++++++++|+++|++ +++++.| +.|.|+|+++||++|||+++|+++|+++||.++||
T Consensus 96 ~~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~ 175 (278)
T 2nn6_C 96 RSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEE 175 (278)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSS
T ss_pred cCCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 3578899999999999999996 6766654 34799999999999999999999999999999996
Q ss_pred --------------CccceeEEEEEEeecC-cceee------cCCCCeEEEEEcCCCCcEEEEEEee--cCCHHHHHHHH
Q 026672 148 --------------PMRDIVTSCSAGYLNS-TPLLD------SAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVM 204 (235)
Q Consensus 148 --------------p~~~~~~a~s~~~~~~-~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g--~~~~~~~~~~l 204 (235)
||+++|+++|+|++++ .+++| +.++.+++|++ +..++|+++++.| .++++++.+++
T Consensus 176 ~~~~~~~~~~~~~lp~~~~~~avs~g~~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l 254 (278)
T 2nn6_C 176 TALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVM-DEEGKLCCLHKPGGSGLTGAKLQDCM 254 (278)
T ss_dssp SBCCCTTSCCCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEEE-CTTCCEEEEEESCCSCCCHHHHHHHH
T ss_pred CcceecCcccccccccCCceEEEEEEEECCceEEECCCHHHHhhcCceEEEEE-cCCCcEEEEEccCCCCCCHHHHHHHH
Confidence 7999999999999998 99999 23456788865 4467899999987 79999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026672 205 QLAIEGCKAVANYIREVLLEN 225 (235)
Q Consensus 205 ~~a~~~~~~i~~~i~~~l~~~ 225 (235)
+.|.++++++++.+++++++.
T Consensus 255 ~~a~~~~~~i~~~~~~~l~~~ 275 (278)
T 2nn6_C 255 SRAVTRHKEVKKLMDEVIKSM 275 (278)
T ss_dssp HHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988753
No 21
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=1.9e-44 Score=338.54 Aligned_cols=224 Identities=22% Similarity=0.343 Sum_probs=199.6
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEE-ECCccccccccC--CCCceEEEEEEeeCCCC
Q 026672 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQ--MSDQALVRCEYSMANFS 78 (235)
Q Consensus 2 e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V-~gp~e~~~~~~~--~~~~~~l~v~~~~~~~~ 78 (235)
++|+++|.|+|||.++|+|++++++|+++++||||+|++|+|+|+|+| +||.++.++.+. .++++.+.++|.++||+
T Consensus 323 ~~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~s 402 (726)
T 4aid_A 323 RGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYS 402 (726)
T ss_dssp HHHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCc
Confidence 468899999999999999999999999999999999999999999999 799887554322 35789999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHhhhh-cCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEE
Q 026672 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (235)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s 157 (235)
++++++++.+++++++++++++++|+++++ .+.||++ |+|+++||++|||+++|++||+++||+||||||++++++++
T Consensus 403 t~er~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~~Vaavs 481 (726)
T 4aid_A 403 VGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYT-IRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIA 481 (726)
T ss_dssp GTCCCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEE
T ss_pred ccccccCCCcchhhHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCccccCeeEEE
Confidence 999887888999999999999999999998 6889995 99999999999999999999999999999999999999999
Q ss_pred EEeecC----cceee----cCCCCeEEEEEcCCCCcEEEEEEeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 158 AGYLNS----TPLLD----SAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVLLENT 226 (235)
Q Consensus 158 ~~~~~~----~~l~D----~~~~~~~~v~~~~~~~~i~~~~~~g~---~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~ 226 (235)
+|++++ .+++| +...+++++.+.++.+.|+.+|++|+ |+.+++.+++++|.++|.+|++.++++|.+..
T Consensus 482 vGli~~g~~~~iLlD~~~~Ed~~gd~d~~Va~t~~gIt~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~~r 561 (726)
T 4aid_A 482 MGLILEQDGFAVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAPR 561 (726)
T ss_dssp EEEEECSSCEEEEESCCTTGGGGSSEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred EEEEcCCCceEEEecCChhHHhcCCceEEEEecCCceEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999964 36789 33345566666566777999999874 69999999999999999999999999987653
No 22
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=6.5e-44 Score=331.99 Aligned_cols=223 Identities=23% Similarity=0.302 Sum_probs=193.8
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEEC-Ccccccccc------CCCCceEEEEEEee
Q 026672 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG-PREVQNKSQ------QMSDQALVRCEYSM 74 (235)
Q Consensus 2 e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~g-p~e~~~~~~------~~~~~~~l~v~~~~ 74 (235)
++|+++|.|+|||.++|+|++++++|+++++||||+|++|+|+|+|+|++ |.++.++.+ ..++++.+.++|.+
T Consensus 311 ~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~ 390 (630)
T 3u1k_A 311 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEF 390 (630)
T ss_dssp HHHHHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHhcCCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEe
Confidence 46888999999999999999999999999999999999999999999998 433322211 13678999999999
Q ss_pred CCCCccccCCCCCCCchhHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeE
Q 026672 75 ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVT 154 (235)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~ 154 (235)
+||++++++++|.+++++.+++++++++|+++++ +.||+ .|+|+++||++|||+++|+++|+++||+||||||+++++
T Consensus 391 ~P~st~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p~-tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Va 468 (630)
T 3u1k_A 391 PPYATNEIGKVTGLNRRELGHGALAEKALYPVIP-RDFPF-TIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVA 468 (630)
T ss_dssp CGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCSS-EEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCE
T ss_pred cCCcccccccCCCCChHHHHHHHHHHHHHHhhCc-ccCCe-EEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccceE
Confidence 9999999877888999999999999999999997 57998 599999999999999999999999999999999999999
Q ss_pred EEEEEeec------C-----cceee----cCCCCeEEEEEcCCCCcEEEEEEee---cCCHHHHHHHHHHHHHHHHHHHH
Q 026672 155 SCSAGYLN------S-----TPLLD----SAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVAN 216 (235)
Q Consensus 155 a~s~~~~~------~-----~~l~D----~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~~~~~l~~a~~~~~~i~~ 216 (235)
++++|+++ + .+++| +...+++++.+..+.+.|+.+|++| .|+.+++.+++++|++++.+|++
T Consensus 469 avs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~t~~gIt~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I~~ 548 (630)
T 3u1k_A 469 GVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 548 (630)
T ss_dssp EEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEEECSSCEEEEEEEECSSCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcccccccCceEEecCCHHHHhhCcceEEEEecCCceEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 3 57899 2223344444444455599999987 47999999999999999999999
Q ss_pred HHHHHHHHHH
Q 026672 217 YIREVLLENT 226 (235)
Q Consensus 217 ~i~~~l~~~~ 226 (235)
.+++++.+..
T Consensus 549 ~m~~al~~~~ 558 (630)
T 3u1k_A 549 IMNKTISKPR 558 (630)
T ss_dssp HHHHHCSSCC
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 23
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=6.1e-43 Score=307.48 Aligned_cols=220 Identities=16% Similarity=0.209 Sum_probs=194.6
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCC
Q 026672 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (235)
Q Consensus 5 ~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 84 (235)
+++|+|+|||+++|+|++++++| +++|||+|++|+|+|+|+|++|.... ....|++|.|.++|++.|+++.+++
T Consensus 35 L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~p--~~~~~~~g~l~~~v~~~p~a~~~~~- 108 (358)
T 2nn6_A 35 IEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSP--KLNRATEGILFFNLELSQMAAPAFE- 108 (358)
T ss_dssp HHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECC--CSTTTTSCCEEEEEEECTTTCSSCC-
T ss_pred HhcCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccCC--cccCCCCcEEEEEEEecCCcccccc-
Confidence 46899999999999999999999 89999999999999999999976432 2345889999999999999988754
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhhcCC--C------CccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCC--------
Q 026672 85 KPKGDRRSTEISLVIRQTMEACILTHL--M------PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIP-------- 148 (235)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~~~~--~------p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip-------- 148 (235)
.|++++++++++++|+++|++++.++. + |.|.|+|+++||++|||+++||++|+++||.++|+|
T Consensus 109 ~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~~ 188 (358)
T 2nn6_A 109 PGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDE 188 (358)
T ss_dssp SSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCCe
Confidence 467889999999999999999644433 2 568999999999999999999999999999999999
Q ss_pred ---------------ccceeEEEEEEee--cCcceee------cCCCCeEEEEEcCCCCcEEEEEEee--cCCHHHHHHH
Q 026672 149 ---------------MRDIVTSCSAGYL--NSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDV 203 (235)
Q Consensus 149 ---------------~~~~~~a~s~~~~--~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g--~~~~~~~~~~ 203 (235)
++++|+++|+|++ ++.+++| +.++.+++|+ ++..++|+++++.| .++++++.++
T Consensus 189 v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va-~t~~g~I~~lqk~G~~~ls~~~l~~~ 267 (358)
T 2nn6_A 189 VTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIA-MNKHREICTIQSSGGIMLLKDQVLRC 267 (358)
T ss_dssp CBCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEE-EETTTEEEEEEEESCCCCCHHHHHHH
T ss_pred eEecccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEE-EcCCCeEEEEEeCCCCCCCHHHHHHH
Confidence 8999999999987 7789999 3467789987 56678999999876 4899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026672 204 MQLAIEGCKAVANYIREVLLENTKQLEC 231 (235)
Q Consensus 204 l~~a~~~~~~i~~~i~~~l~~~~~~~~~ 231 (235)
++.|.++++++.+.+++++++..+.+..
T Consensus 268 l~~A~~~~~~i~~~~~~~l~~~~~~r~~ 295 (358)
T 2nn6_A 268 SKIAGVKVAEITELILKALENDQKVRKE 295 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhh
Confidence 9999999999999999999998776543
No 24
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=2.3e-43 Score=333.64 Aligned_cols=221 Identities=24% Similarity=0.392 Sum_probs=199.0
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEE-ECCcccccccc--CCCCceEEEEEEeeCCCC
Q 026672 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (235)
Q Consensus 2 e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V-~gp~e~~~~~~--~~~~~~~l~v~~~~~~~~ 78 (235)
++|+++|.|+|||.++|+|++++++|+++++||||+|++|+|+|+|+| .||.++.++.+ ..++++.+.++|.++||+
T Consensus 348 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~s 427 (757)
T 1e3p_A 348 ERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYS 427 (757)
T ss_dssp HHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcc
Confidence 567889999999999999999999999999999999999999999999 59987765443 256789999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHhhhh-cCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEE
Q 026672 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (235)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s 157 (235)
++++++.+.+++++++++++++++|+++|+ .+.||++ |+|+++||++|||+++|+++|+++||+||||||++++++++
T Consensus 428 t~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaavs 506 (757)
T 1e3p_A 428 VGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYA-IRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 506 (757)
T ss_dssp GTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCEE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEE
T ss_pred cccccCCCCCchhHHHHHHHHHHHHHHhccccccCCEE-EEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceEEEE
Confidence 998877778999999999999999999998 6889985 99999999999999999999999999999999999999999
Q ss_pred EEee----cC----cceee------cCCCCeEEEEEcCCCCcEEEEEEeec---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 158 AGYL----NS----TPLLD------SAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 220 (235)
Q Consensus 158 ~~~~----~~----~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g~---~~~~~~~~~l~~a~~~~~~i~~~i~~ 220 (235)
++++ ++ .+++| +..+.+++|+ ++.++|+.+|++|+ ++.+++.++++.|.+++.+|++.+++
T Consensus 507 ~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va--~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~ 584 (757)
T 1e3p_A 507 MGLISQEINGETHYVALTDILGAEDAFGDMDFKVA--GTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 584 (757)
T ss_dssp EEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEE--ECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCccceeEEeCCCHHHHhccCceEEEE--ecCCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 33 67899 2345566664 55688999999876 59999999999999999999999999
Q ss_pred HHHHH
Q 026672 221 VLLEN 225 (235)
Q Consensus 221 ~l~~~ 225 (235)
+|.+.
T Consensus 585 al~~~ 589 (757)
T 1e3p_A 585 AIDTP 589 (757)
T ss_dssp HCSSC
T ss_pred Hhccc
Confidence 98765
No 25
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.7e-43 Score=306.14 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=192.6
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCC
Q 026672 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (235)
Q Consensus 5 ~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 84 (235)
+++|+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+++.. .+....|++|.|.++|++.|++++.++
T Consensus 32 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~--~p~~~~~~~g~l~~~v~~~p~a~~~~~- 108 (305)
T 2nn6_E 32 VQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMG--TPKLEKPNEGYLEFFVDCSASATPEFE- 108 (305)
T ss_dssp HHTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCS--CCCSSSCSSCCEEEECCCCTTTCSSCC-
T ss_pred HhcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEee--CCCcCCCCceEEEEEEEeCCCcCcccc-
Confidence 36899999999999999999999999999999999999999999999654 233456889999999999999988653
Q ss_pred CCCCCchhHHHHHHHHHHHHh--hhhcC---CCCc---cEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccce----
Q 026672 85 KPKGDRRSTEISLVIRQTMEA--CILTH---LMPR---SQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDI---- 152 (235)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~--~i~~~---~~p~---~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~---- 152 (235)
.+.+++++++++++|+++|++ +|+++ .||+ |.|+|+++||++|||+++||++|+++||.++++|+.++
T Consensus 109 ~r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~ 188 (305)
T 2nn6_E 109 GRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDE 188 (305)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC-
T ss_pred CCCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 224557899999999999999 67777 4675 46999999999999999999999999999999997544
Q ss_pred -----------------------eEEEEEEeecCcceee------cCCCCeEEEEEcCCCCcEEEEEEee--cCCHHHHH
Q 026672 153 -----------------------VTSCSAGYLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFE 201 (235)
Q Consensus 153 -----------------------~~a~s~~~~~~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g--~~~~~~~~ 201 (235)
|+++|++++++.+++| +.++.+++|++. ..++|+++++.| .++++++.
T Consensus 189 ~~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~~~l~Dpt~~Ee~~~~~~l~Va~~-~~g~i~~i~~~g~~~l~~~~l~ 267 (305)
T 2nn6_E 189 EGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVT-SKGVVTCMRKVGKGSLDPESIF 267 (305)
T ss_dssp -----EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEECCC-SSSCCCEEEEEESSCBCHHHHH
T ss_pred CCceeeeccCcccccccccccCceEEEEEEEECCEEEECCCHHHHhhcCCcEEEEEc-CCCCEEEEEccCCCCCCHHHHH
Confidence 7899999999999999 345667787544 467899999887 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026672 202 DVMQLAIEGCKAVANYIREVLLENTKQLE 230 (235)
Q Consensus 202 ~~l~~a~~~~~~i~~~i~~~l~~~~~~~~ 230 (235)
++++.|.++++++.+.+++++++..+.+.
T Consensus 268 ~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 296 (305)
T 2nn6_E 268 EMMETGKRVGKVLHASLQSVVHKEESLGP 296 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999998776443
No 26
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-42 Score=300.57 Aligned_cols=219 Identities=17% Similarity=0.192 Sum_probs=174.9
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCC
Q 026672 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (235)
Q Consensus 5 ~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 84 (235)
+++|+|+|||+++|+|++++++| +++|||+|++|+|+|+|+|++|... +....|+++.+.++|++.|++.... +
T Consensus 19 l~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~--p~~~~~~~g~~~~~ve~~~~~~~~~-~ 92 (305)
T 2wp8_A 19 LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQ--PYEDRPFEGLFVISTEISPMAGSQF-E 92 (305)
T ss_dssp HTTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC---CCSSCTTCCEEEEEECCC---------
T ss_pred HhhCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccC--CcccCCCCcEEEEEEEECCCCCccc-c
Confidence 47899999999999999999999 8999999999999999999997543 2334688899999999999887765 3
Q ss_pred CCCCC-chhHHHHHHHHHHHH--hhhhcCCC---Cc---cEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCC-------
Q 026672 85 KPKGD-RRSTEISLVIRQTME--ACILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGIP------- 148 (235)
Q Consensus 85 ~~~~~-~~~~~l~~~l~~~l~--~~i~~~~~---p~---~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip------- 148 (235)
.|+++ +++++++++|+++|+ .+|+++.+ |+ |.|+|+++||++|||+++|+++|+++||.++|+|
T Consensus 93 ~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~ 172 (305)
T 2wp8_A 93 NGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE 172 (305)
T ss_dssp --------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTS
T ss_pred CCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCC
Confidence 46777 899999999999999 56777765 54 6799999999999999999999999999999999
Q ss_pred ----------------ccceeEEEEEEeec--------------Ccceee------cCCCCeEEEEEcCCCCcEEEEEEe
Q 026672 149 ----------------MRDIVTSCSAGYLN--------------STPLLD------SAGGPDVTVGILPTLDKVTLLQMD 192 (235)
Q Consensus 149 ----------------~~~~~~a~s~~~~~--------------~~~l~D------~~~~~~~~v~~~~~~~~i~~~~~~ 192 (235)
|++.|+++|+|+++ +.+++| +.++.+++|++ +..++|+.+++.
T Consensus 173 ~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va~-~~~g~i~~l~~~ 251 (305)
T 2wp8_A 173 QIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTL-NKNREVVQVSKA 251 (305)
T ss_dssp SCCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEEE-CTTSEEEEEEEE
T ss_pred ceEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEEEE-cCCCcEEEEEec
Confidence 67899999999997 788999 34677888865 457889999998
Q ss_pred e--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026672 193 A--KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 230 (235)
Q Consensus 193 g--~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~ 230 (235)
| .++.+++.++++.|.+++++|.+.++++++++.+++.
T Consensus 252 g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~ 291 (305)
T 2wp8_A 252 GGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRN 291 (305)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 6999999999999999999999999999999888764
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.7e-42 Score=326.63 Aligned_cols=224 Identities=20% Similarity=0.316 Sum_probs=185.0
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEE-ECCcccccccc--CCCCceEEEEEEeeCCCC
Q 026672 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (235)
Q Consensus 2 e~~~~~~~R~DgR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V-~gp~e~~~~~~--~~~~~~~l~v~~~~~~~~ 78 (235)
++|+++|.|+|||.++|+|++++++|+++++||||+|++|+|+|+|+| +||.+.++..+ ..++.+.+.++|.++||+
T Consensus 313 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~s 392 (723)
T 3cdi_A 313 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYS 392 (723)
T ss_dssp HHHHTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGG
T ss_pred HHHhccCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCC
Confidence 467889999999999999999999999999999999999999999999 69977543211 236788999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHhhhhc-CCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEE
Q 026672 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (235)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~~-~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s 157 (235)
++++++.+.+++++.+++++++++|++++++ +.||++ |+|+++||++|||+++|+++|+++||+||||||++++++++
T Consensus 393 t~e~~r~g~p~~REi~~~~li~raL~~vI~~~~~~p~t-I~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs 471 (723)
T 3cdi_A 393 VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 471 (723)
T ss_dssp GTCCCCC-----CTTHHHHHHHHHHHTTSCCSSSSCSC-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEE
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHhcCcccCCCEE-EEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeEE
Confidence 9988777788899999999999999999986 679985 99999999999999999999999999999999999999999
Q ss_pred EEeec-Cc---ceee------cCCCCeEEEEEcCCCCcEEEEEEee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 158 AGYLN-ST---PLLD------SAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLLE 224 (235)
Q Consensus 158 ~~~~~-~~---~l~D------~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~ 224 (235)
+++++ |. +++| +.++.+++|+ ++ .+.|+.+|++| .|+.+++.++++.|.+++.+|.+.|+++|.+
T Consensus 472 ~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va-~t-~~gI~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~ 549 (723)
T 3cdi_A 472 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVA-GS-RDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 549 (723)
T ss_dssp EEEEEETTEEEEESSCCGGGGGGCSEEEEEE-EC-SSCEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred EEEEcCCCceEEEECCChHHhhhccceeeec-cc-CCceEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99996 44 7899 2345567765 33 34499999985 5899999999999999999999999999987
Q ss_pred HHHH
Q 026672 225 NTKQ 228 (235)
Q Consensus 225 ~~~~ 228 (235)
+.+.
T Consensus 550 ~~~~ 553 (723)
T 3cdi_A 550 PRGD 553 (723)
T ss_dssp ----
T ss_pred cchh
Confidence 7543
No 28
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=8.1e-45 Score=301.00 Aligned_cols=203 Identities=22% Similarity=0.330 Sum_probs=159.6
Q ss_pred CCCCcceEEEECCcCCCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccccCCCCCCCchhHHH
Q 026672 16 PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEI 95 (235)
Q Consensus 16 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~l 95 (235)
++|+|++++++|++++++|||+|++|+|+|+|+|+||.++++ ..+.+++++++|+|. |++ |+++++ ++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~-~~~~~~~~~l~v~~~--p~~-------G~~~~~--e~ 69 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHA-SKASDEAMTLDISYR--ANC-------GDNKFN--VL 69 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC--------------CCCSS--CCC-------C--CCS--SC
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcc-cccCCceEEEEEEEc--CCC-------CCCCHH--HH
Confidence 579999999999999999999999999999999999987654 345688888887765 443 233333 68
Q ss_pred HHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchHHHHHHHHHHHHHhCCCCccceeEEEEEEeecCcceee------c
Q 026672 96 SLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD------S 169 (235)
Q Consensus 96 ~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l~a~i~aa~~AL~~agip~~~~~~a~s~~~~~~~~l~D------~ 169 (235)
+++|+|+|+++++++.||++.|+|+++||++||++++|++||+++||.++||||+++++++++|++++.+++| +
T Consensus 70 ~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~~g~~llDpt~~Ee~ 149 (222)
T 3krn_A 70 NNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEA 149 (222)
T ss_dssp TTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEECSSSEESSCCTTTTT
T ss_pred HHHHHHHHHHhccHHhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEECCEEEeCCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 2
Q ss_pred CCCCeEEEEE---cCCCCcEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026672 170 AGGPDVTVGI---LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 230 (235)
Q Consensus 170 ~~~~~~~v~~---~~~~~~i~~~~~~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~ 230 (235)
.++.+++|++ +++.++|+++|++|.++++++.++++.|.++++++.++++++++++.++..
T Consensus 150 ~~~~~l~va~~~~~~~~~~i~~vq~~g~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~~~~~ 213 (222)
T 3krn_A 150 ASTGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVDE 213 (222)
T ss_dssp SCC-CCCCEECCCSSSSCCEEEECCBSSCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCccEEEEEEccCCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3456788887 666799999999999999999999999999999999999999999887643
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=266.68 Aligned_cols=202 Identities=18% Similarity=0.284 Sum_probs=174.8
Q ss_pred CCcceEEEECCcCC-CCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccc-----cCCCCCCCch
Q 026672 18 EMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (235)
Q Consensus 18 e~R~i~i~~g~l~~-a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~-----~~~~~~~~~~ 91 (235)
.-|++++++|.+++ |+|||++++|+|+|+|+|++|.++++. +..+|+|+|+..+++.+. .++.++|+++
T Consensus 13 ~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~-----df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~ 87 (630)
T 3u1k_A 13 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-----QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDK 87 (630)
T ss_dssp SSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS-----SSCCEEEEEECSEETTTTEECTTC-----CCHH
T ss_pred CCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCC-----CeeEEEEEEEecccccCCCCccccccCCCCCHH
Confidence 35899999999985 999999999999999999999876432 456699999998888743 2345789999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCch--HHHHHHHHHHHHHhCCCCccceeEEEEEEeecCcceee-
Q 026672 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD- 168 (235)
Q Consensus 92 ~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~--l~a~i~aa~~AL~~agip~~~~~~a~s~~~~~~~~l~D- 168 (235)
+++++++|+|.|+++++.+.||+ ++|+++||+.||+. ..+|+||+++||.++||||+++++++++++++|++++|
T Consensus 88 e~lisRlIdR~lRp~~~~~~~~~--~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i~g~~vldP 165 (630)
T 3u1k_A 88 EILTSRIIDRSIRPLFPAGYFYD--TQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNP 165 (630)
T ss_dssp HHHHHHHHHHHHGGGSCTTCCCC--EEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHhHHhhhcccccCCCc--eEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEECCEEEECC
Confidence 99999999999999999888886 56788999999997 78999999999999999999999999999999999999
Q ss_pred -----cCCCCeEEEEEcCCCCcEEEEEEeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 169 -----SAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227 (235)
Q Consensus 169 -----~~~~~~~~v~~~~~~~~i~~~~~~g~-~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~ 227 (235)
+.++.+++|+.. ..++|++++..|. ++++++.++++.|.+.++.+++++++.+++..+
T Consensus 166 t~~E~~~s~~dl~Va~t-~~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~ 229 (630)
T 3u1k_A 166 TRKEMSSSTLNLVVAGA-PKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGV 229 (630)
T ss_dssp CHHHHHTEEEEEEEEEE-TTTEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHhhCCceEEEEEc-cCCcEEEEECCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345567787654 4678999999886 999999999999999999999999999988765
No 30
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.97 E-value=3e-30 Score=236.04 Aligned_cols=201 Identities=19% Similarity=0.306 Sum_probs=165.6
Q ss_pred CcceEEEECCcC-CCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccc-----cCCCCCCCchh
Q 026672 19 MRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRRS 92 (235)
Q Consensus 19 ~R~i~i~~g~l~-~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~-----~~~~~~~~~~~ 92 (235)
-|++++++|.+. +|+||+++++|+|+|+|+|++|.+++.. .+..+++|+|....++.+. .++.|+|++++
T Consensus 13 ~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g----~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~~ 88 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGE 88 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT----CCSCCEEEEEEECGGGTTCCCSCC-----CCCHHH
T ss_pred CEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCC----CCCccceeeeeeehhhcccCCCcCcCcCCCCChhh
Confidence 589999999887 6999999999999999999998765432 2334599999753333322 23468999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCchH--HHHHHHHHHHHHhCCCCccceeEEEEEEeecCcceee--
Q 026672 93 TEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTR--SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD-- 168 (235)
Q Consensus 93 ~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~l--~a~i~aa~~AL~~agip~~~~~~a~s~~~~~~~~l~D-- 168 (235)
++++|+|+|.|+++++...+. .++|+++||+.||+.. .+++||+++||..++||++++++++++|+++|++++|
T Consensus 89 ~l~~RlIdR~lRplfp~~~~~--evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i~g~~vlnPt 166 (549)
T 3gme_A 89 TLIARLIDRPIRPLFPEGFVN--EVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPT 166 (549)
T ss_dssp HHHHHHHHHHHGGGSCTTCCS--CEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEETTEEEESCC
T ss_pred hHHHHHhCCccccccccCCcc--cEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEECCEEEECCC
Confidence 999999999999998876554 5999999999999653 6889999999999999999999999999999999999
Q ss_pred ----cCCCCeEEEEEcCCCCcEEEEEEee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 169 ----SAGGPDVTVGILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227 (235)
Q Consensus 169 ----~~~~~~~~v~~~~~~~~i~~~~~~g-~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~ 227 (235)
+.++.+++|+ .+.+.+++++..| .|+++++.++++.|.+.++++++++++++++..+
T Consensus 167 ~~e~~~s~~dl~va--~t~~~i~mve~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~~~ 228 (549)
T 3gme_A 167 QDELKESKLDLVVA--GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGK 228 (549)
T ss_dssp TTTTTTCSBCEEEE--ECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCC
T ss_pred HHHHhhCceEEEEE--ecCCeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344556664 3345599999886 6999999999999999999999999999988654
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.97 E-value=2.3e-29 Score=236.57 Aligned_cols=202 Identities=21% Similarity=0.293 Sum_probs=169.0
Q ss_pred CCcceEEEECCcC-CCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccc-----cCCCCCCCch
Q 026672 18 EMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (235)
Q Consensus 18 e~R~i~i~~g~l~-~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~-----~~~~~~~~~~ 91 (235)
.-|++++++|.+. +|+||+++++|+|+|+|+|++|.+++.. .+..+++++|....++.+. .++.|+|+++
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g----~df~pltveY~ek~~a~G~iPg~~~~REGrps~~ 101 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPG----QDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEK 101 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT----CCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHH
T ss_pred CCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCC----CCCcCceeeeeeehhhcccCCCcccCCCCCCCch
Confidence 3689999999886 6999999999999999999998765432 2345699999743333222 2446899999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCch--HHHHHHHHHHHHHhCCCCccceeEEEEEEeecCcceee-
Q 026672 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD- 168 (235)
Q Consensus 92 ~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~--l~a~i~aa~~AL~~agip~~~~~~a~s~~~~~~~~l~D- 168 (235)
+++++|+|+|.|+++++...++ .++|+++||+.||+. ..+|+||+++||.++++|++++++|+++|+++|++++|
T Consensus 102 ~~li~RlIdR~lRplf~~~~~~--evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i~g~~vldP 179 (726)
T 4aid_A 102 ETLVSRLIDRPIRPLFVKGFKN--EVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNP 179 (726)
T ss_dssp HHHHHHHHHHHHGGGBCTTCCS--CEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEETTEEEESC
T ss_pred hhhHHHHhCCccccccccCCcc--ceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECCEEEECC
Confidence 9999999999999999876554 699999999999975 46899999999999999999999999999999999999
Q ss_pred -----cCCCCeEEEEEcCCCCcEEEEEEee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 169 -----SAGGPDVTVGILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227 (235)
Q Consensus 169 -----~~~~~~~~v~~~~~~~~i~~~~~~g-~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~ 227 (235)
+.++.+++|+ +. .+.+++++..+ .|+++++.++++.|.+.++++++++++++++..+
T Consensus 180 t~~E~~~s~~dl~va-~t-~~~i~mve~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~g~ 242 (726)
T 4aid_A 180 TLDEMKESKMDLVVA-GT-ADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAK 242 (726)
T ss_dssp CHHHHHTCSEEEEEE-EC-SSCEEEEEEEESSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCC
T ss_pred CHHHHhhCceeEEEE-Ee-CCeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455667765 33 33499999886 5999999999999999999999999999987654
No 32
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.97 E-value=3e-29 Score=237.35 Aligned_cols=203 Identities=16% Similarity=0.181 Sum_probs=168.8
Q ss_pred CcceEEEECCcC-CCCeEEEEEe-CCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCccc-----cCCCCCCCch
Q 026672 19 MRQLRAEIGNVA-KADGSAVFEM-GNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (235)
Q Consensus 19 ~R~i~i~~g~l~-~a~GSa~v~~-G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~-----~~~~~~~~~~ 91 (235)
-|++++++|.+. +|+||+++++ |+|+|+|+|++|.+++++. +..+|+|+|+...++.+. .+|.|+|+++
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~~----df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~ 111 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQL----DFFPLTVDVEERMYAAGKIPGSFFRREGRPSED 111 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTTC----SSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCCC----CCccEEEEEEecccccccCCCcccccCcCCChH
Confidence 489999999985 8999999999 9999999999988765432 344599999754433322 2456899999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCch--HHHHHHHHHHHHHhCCCCccceeEEEEEEeecCcceee-
Q 026672 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD- 168 (235)
Q Consensus 92 ~~~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~--l~a~i~aa~~AL~~agip~~~~~~a~s~~~~~~~~l~D- 168 (235)
+++++++|+|.|+|+++...+ ..++|+++||+.||+. ..+|+|||++||.+++||++++++|+++|+++|++++|
T Consensus 112 e~l~~RlIdR~LRplfp~~~~--~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~~g~~vlnP 189 (757)
T 1e3p_A 112 AILTCRLIDRPLRPSFKKGLR--NEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFP 189 (757)
T ss_dssp HHHHHHHHHHHHGGGBCTTBC--EEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHCCcchhccccCCC--CceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEECCEEEECC
Confidence 999999999999998776432 3699999999999965 89999999999999999999999999999999999999
Q ss_pred -----cCCCCeEEEEEcC---CCCcEEEEEE-------------eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 169 -----SAGGPDVTVGILP---TLDKVTLLQM-------------DAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227 (235)
Q Consensus 169 -----~~~~~~~~v~~~~---~~~~i~~~~~-------------~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~ 227 (235)
+.+..+++|+... +.+.|.+++. .+.++++++.++++.|.+.++++++++++++++..+
T Consensus 190 t~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~~se~~l~~al~~a~~~i~~l~~~q~~~~~~~~~ 269 (757)
T 1e3p_A 190 THTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAK 269 (757)
T ss_dssp CHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHhcCceeEEEEeccccCCCCcEEEEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2334456665321 1667899998 246999999999999999999999999999887654
No 33
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.97 E-value=2.8e-29 Score=236.82 Aligned_cols=200 Identities=20% Similarity=0.318 Sum_probs=166.0
Q ss_pred cceEEEECCcC-CCCeEEEEEeCCeEEEEEEECCccccccccCCCCceEEEEEEeeCCCCcccc-----CCCCCCCchhH
Q 026672 20 RQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRRST 93 (235)
Q Consensus 20 R~i~i~~g~l~-~a~GSa~v~~G~T~Vi~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~-----~~~~~~~~~~~ 93 (235)
|++++++|.+. +|+|||++++|+|+|+|+|+++.++++. .+..+++|+|....++.+.. ++.|+|+++++
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~----~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS----CCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCC----CCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 59999999985 8999999999999999999998765432 24456999999765554442 45689999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCccEEEEEEEEEecCCch--HHHHHHHHHHHHHhCCCCccceeEEEEEEeecCcceee---
Q 026672 94 EISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD--- 168 (235)
Q Consensus 94 ~l~~~l~~~l~~~i~~~~~p~~~i~I~v~il~~dG~~--l~a~i~aa~~AL~~agip~~~~~~a~s~~~~~~~~l~D--- 168 (235)
+++|+|+|.|+++++...+ +.++|+++||+.||+. ..+|+||+++||..++||+.++++++++|+++|++++|
T Consensus 96 l~sRlIdR~lRplfp~~~~--~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i~g~~v~nPt~ 173 (723)
T 3cdi_A 96 LIARLIDRPIRPLFPEGFV--NEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQ 173 (723)
T ss_dssp HHHHHHHHHHGGGSCTTCC--SCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEETTEEEESCCT
T ss_pred HHHHHhCccchhcccccCc--ceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEECCEEEECcCH
Confidence 9999999999999876543 4699999999999996 45999999999999999999999999999999999999
Q ss_pred ---cCCCCeEEEEEcCCCCcEEEEEEeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 169 ---SAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 227 (235)
Q Consensus 169 ---~~~~~~~~v~~~~~~~~i~~~~~~g~-~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~ 227 (235)
+.++.+++++ .+.+.+++++..+. ++++++.++++.|.+.++++++++++++++..+
T Consensus 174 ~e~~~s~~~lvva--gt~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~ 234 (723)
T 3cdi_A 174 DELKESKLDLVVA--GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGK 234 (723)
T ss_dssp TGGGGCSEEEEEE--ECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCceEEEE--ccCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2233445554 44556999998764 999999999999999999999999999987654
No 34
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=60.68 E-value=9.1 Score=22.77 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 194 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 229 (235)
Q Consensus 194 ~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 229 (235)
.++++.+.++-.+|........++|++++.++.++.
T Consensus 15 rl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~ 50 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNH 50 (55)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999988764
No 35
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=50.81 E-value=8.2 Score=23.80 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 194 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 229 (235)
Q Consensus 194 ~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 229 (235)
.++++...++-..|....+.+..+++++|.+++++.
T Consensus 19 rId~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~~ 54 (56)
T 2kel_A 19 YMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQKR 54 (56)
T ss_dssp EEEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999997653
No 36
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=36.18 E-value=23 Score=19.99 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 194 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 228 (235)
Q Consensus 194 ~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 228 (235)
.++++.+.++=+.|......-.++|++++..+.++
T Consensus 8 ~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 8 TLSESVLENLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp EEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46788888888889888888899999999888754
No 37
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=32.95 E-value=1.3e+02 Score=21.25 Aligned_cols=45 Identities=2% Similarity=0.093 Sum_probs=36.0
Q ss_pred CcEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 184 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 228 (235)
Q Consensus 184 ~~i~~~~~~g~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 228 (235)
.-.+.++.+|..+.+.+.++++.-.+.|..+.+.++++++++..+
T Consensus 62 ~~~lrIqT~~~~p~eaL~~al~~L~~~~~~l~~~f~~a~~~~~~~ 106 (115)
T 1xpp_A 62 NPQIYVRVKSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRYESD 106 (115)
T ss_dssp CCEEEEEESSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 346677777655889999999999999999999999988876443
No 38
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=32.31 E-value=29 Score=20.33 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 194 KLPTNTFEDVMQLAIEGCKAVANYIREVLL 223 (235)
Q Consensus 194 ~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~ 223 (235)
.+++++...+-+.|......+.+++++++.
T Consensus 21 Rlt~eE~~~l~~~A~~~g~s~SeyiR~~~l 50 (51)
T 2ba3_A 21 RFSPVEDETIRKKAEDSGLTVSAYIRNAAL 50 (51)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 478999999999999999999999998763
No 39
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=32.02 E-value=44 Score=19.98 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 194 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 229 (235)
Q Consensus 194 ~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 229 (235)
.++++....+-..|.+...++..+|...|.+..+..
T Consensus 13 Rlp~eL~~~l~~~A~~~grS~N~~i~~~L~~~l~~~ 48 (53)
T 1baz_A 13 RWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKE 48 (53)
T ss_dssp ECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 478999999999999999999999999999887643
No 40
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=29.63 E-value=33 Score=20.10 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026672 194 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECR 232 (235)
Q Consensus 194 ~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~~ 232 (235)
.++.+...++=.+|......-..+|++++..+.++...+
T Consensus 9 rl~~~l~~~l~~lA~~~~rs~s~lir~Ai~~yl~~~e~~ 47 (52)
T 2gpe_A 9 KLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENS 47 (52)
T ss_dssp EEEHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred ECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467888888888899888899999999999998876443
No 41
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=25.02 E-value=70 Score=20.85 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 194 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 229 (235)
Q Consensus 194 ~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 229 (235)
.++.+.+.++=.+|......-..++++++..+..+.
T Consensus 15 ~Lpdel~~~Ld~la~~~g~srselireAi~~yl~~~ 50 (80)
T 2k5j_A 15 DLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQ 50 (80)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 578999999999999988889999999999888654
No 42
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=21.03 E-value=1.2e+02 Score=18.99 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026672 194 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 229 (235)
Q Consensus 194 ~~~~~~~~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 229 (235)
.++++.-.++-..|.+...++-+++...|++.....
T Consensus 13 Rlp~eLh~~l~~~A~~~GrSlN~~Iv~~L~~~l~~~ 48 (64)
T 1nla_A 13 RWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKE 48 (64)
T ss_dssp SSCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 478898899999999999999999999999876543
No 43
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=20.53 E-value=88 Score=16.04 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=11.7
Q ss_pred cCCHHHHHHHHHHHHH
Q 026672 194 KLPTNTFEDVMQLAIE 209 (235)
Q Consensus 194 ~~~~~~~~~~l~~a~~ 209 (235)
.|++.+++++++.+.+
T Consensus 8 rfdekqieelldncie 23 (31)
T 4h62_V 8 RFDEKQIEELLDNCIE 23 (31)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 4789999999887765
Done!