BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026674
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3EBL9|VP372_ARATH Vacuolar protein-sorting-associated protein 37 homolog 2
OS=Arabidopsis thaliana GN=VPS37-2 PE=1 SV=1
Length = 218
Score = 278 bits (712), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/233 (60%), Positives = 179/233 (76%), Gaps = 19/233 (8%)
Query: 1 MFKFWGSNEQQ-AQPRPQ-DVTSQSWYPPSVV-SPDSSRPATPSMSSFGSLNLQRPTEQS 57
MF FWGS EQQ Q RP + ++ WY PS+V SP SSRP T
Sbjct: 1 MFNFWGSKEQQQGQSRPSPEASATPWYSPSLVTSPSSSRPQT----------------SG 44
Query: 58 QPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRET 117
Q SHVSP EAAGIIA+LKDKSVDELRKLL+DKDAY+QFL S+DQV IQNNIR+EL +ET
Sbjct: 45 QIPSHVSPGEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKET 104
Query: 118 LQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQ 177
L +AR+NL+KE +++ELRNQ +IIRT+ELA AQEKL++LE Q+E++LK YSP SLL R+Q
Sbjct: 105 LHLARENLEKEPQIVELRNQCRIIRTSELATAQEKLNELENQREEILKFYSPGSLLHRLQ 164
Query: 178 EAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
+AMN+ +EESE L ++ +++++D AFVQKYKKLR+ YHRRAL+HL+AKT S+
Sbjct: 165 DAMNQVDEESEELQQKFMEKDIDTAAFVQKYKKLRSKYHRRALIHLAAKTSSI 217
>sp|Q9SCP9|VP371_ARATH Vacuolar protein-sorting-associated protein 37 homolog 1
OS=Arabidopsis thaliana GN=VPS37-1 PE=1 SV=1
Length = 217
Score = 278 bits (712), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/232 (63%), Positives = 183/232 (78%), Gaps = 17/232 (7%)
Query: 1 MFKFWGS-NEQQAQPRPQDVTSQS-WYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQSQ 58
MF FWGS ++QQ Q RPQ+ +SQS WY PS+ S P++ S G ++ Q
Sbjct: 1 MFNFWGSKDQQQGQSRPQEASSQSPWYSPSL----VSSPSSSRPQSSGQISAQ------- 49
Query: 59 PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETL 118
VSP EAAGII LKDKSVDELRKLL+DKDAY+QFLLS+DQVK+QNNI+DEL RETL
Sbjct: 50 ----VSPGEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETL 105
Query: 119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQE 178
Q+ARDNL+KE +++ELRNQ +IIRTTELA AQEKL++LERQKE++LK YSP SLL ++QE
Sbjct: 106 QLARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQE 165
Query: 179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
AMN+ +EESE L + L++E+D AFVQKYKKLRTTYHRRAL+HL+AKT ++
Sbjct: 166 AMNQVDEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRRALIHLAAKTSNI 217
>sp|A5D8V6|VP37C_HUMAN Vacuolar protein sorting-associated protein 37C OS=Homo sapiens
GN=VPS37C PE=1 SV=2
Length = 355
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQN-NIRD-ELHRETLQIARDNLDKELRMI 132
LKDK++ EL +L D +A IDQ+ +++ ++D +L RE +L + R +
Sbjct: 4 LKDKTLQELEELQNDSEA-------IDQLALESPEVQDLQLEREMALATNRSLAE--RNL 54
Query: 133 ELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKL------YSPASLLKRIQEAMNKTEEE 186
E + +I R+ QE +ER +EQ KL P +LL +Q K EEE
Sbjct: 55 EFQGPLEISRSNLSDRYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQVEGMKIEEE 114
Query: 187 SENLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218
SE + + L+ E+ + F++ + +R H R
Sbjct: 115 SEAMAEKFLEGEVPLETFLENFSSMRMLSHLR 146
>sp|Q5R9T2|VP37C_PONAB Vacuolar protein sorting-associated protein 37C OS=Pongo abelii
GN=VPS37C PE=2 SV=1
Length = 355
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQN-NIRD-ELHRETLQIARDNLDKELRMI 132
LKDK++ EL +L D +A IDQ+ +++ ++D +L RE +L + R +
Sbjct: 4 LKDKTLQELEELQNDSEA-------IDQLALESPEVQDLQLEREMALATNRSLAE--RNL 54
Query: 133 ELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKL------YSPASLLKRIQEAMNKTEEE 186
E + +I R+ QE +ER +EQ KL P +LL +Q K E E
Sbjct: 55 EFQGPLEISRSNLSDKYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQVEGMKIEGE 114
Query: 187 SENLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218
SE + + L+ E+ + F++ + +R H R
Sbjct: 115 SEAMAEKFLEGEVPLETFLENFSSMRMLSHLR 146
>sp|Q8R105|VP37C_MOUSE Vacuolar protein sorting-associated protein 37C OS=Mus musculus
GN=Vps37c PE=2 SV=1
Length = 352
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIEL 134
LKDK++ EL ++ D +A + L+++ ++Q+ +L RE +L ++ +E
Sbjct: 4 LKDKTLQELEEMQNDPEAIAR--LALESPEVQDL---QLEREMALATNRSLAEQ--NLEF 56
Query: 135 RNQSKIIRTTELAAAQEKLHDLERQKEQLLKL------YSPASLLKRIQEAMNKTEEESE 188
+ +I R+ QE +ER +EQ KL P +LL +Q K EEESE
Sbjct: 57 QGPLEISRSNLSDKYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQIEGMKIEEESE 116
Query: 189 NLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218
+ + L+ E+ + F++ + +RT H R
Sbjct: 117 AMAEKFLEGEVPLETFLESFSSMRTLLHLR 146
>sp|Q8NEZ2|VP37A_HUMAN Vacuolar protein sorting-associated protein 37A OS=Homo sapiens
GN=VPS37A PE=1 SV=1
Length = 397
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 35 SRPATPSMSSFGSLNLQRPT-EQSQPLSH----VSPAEAAGIIALLKDKSVDELRKLLAD 89
++PA PS +L L PT + S P S + L + SV +L +
Sbjct: 189 AKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQ 248
Query: 90 KDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRT---TEL 146
++ + L++ Q+K +D+L + ++AR NL E + E + Q+ + + T++
Sbjct: 249 EEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSL-EAKRQTVLDKYELLTQM 307
Query: 147 AAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQ 206
+ EK ++RQ E L + S ++L R++ A ++ EEES+N+ L+ +++I F+
Sbjct: 308 KSTFEK--KMQRQHE-LSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLS 364
Query: 207 KYKKLRTTYHRR 218
+ + RT H R
Sbjct: 365 SFMEKRTICHCR 376
>sp|Q8CHS8|VP37A_MOUSE Vacuolar protein sorting-associated protein 37A OS=Mus musculus
GN=Vps37a PE=2 SV=1
Length = 397
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
Query: 34 SSRPATPSMSSFGSLNLQRPTEQSQP------LSHVSPAEAAGIIALLKDKSVDELRKLL 87
+++P PS SL L PT +S + P + L + SV +L +
Sbjct: 188 AAKPVAPSFGILSSLPLPVPTTESSASVNQNGFGYKMP-DIPDAFPELSELSVSQLTDMN 246
Query: 88 ADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELA 147
++ + L + Q+K +++L + ++AR NL E +E + Q+ + + L
Sbjct: 247 EQEEVLLEQFLMLPQLKQIITDKEDLVKNIEELARKNLLLE-HSLEGKRQTVLDKYELLL 305
Query: 148 AAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQK 207
+ +++ +L + S ++L R++ A ++ EEES+N+ L+ + +I F+
Sbjct: 306 QMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKTEIDDFLNS 365
Query: 208 YKKLRTTYHRR 218
+K+ RT H R
Sbjct: 366 FKEKRTICHCR 376
>sp|Q55DV8|VPS37_DICDI Vacuolar protein sorting-associated protein 37 OS=Dictyostelium
discoideum GN=vps37 PE=3 SV=1
Length = 333
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 86/154 (55%), Gaps = 19/154 (12%)
Query: 75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIAR--DNLDKELRMI 132
LK KSV+EL +LL ++D+ F+ S D+V +N + +L E ++ + D L ++ +
Sbjct: 182 LKSKSVEELEELLKNEDSLNAFIYSYDEVSELSNRKSKLLSENERLTKITDPLPNDINDL 241
Query: 133 ELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKL-------YSPASLLKRIQEAMNKTEE 185
+ L +++KL +L+R++EQL + YS +LL+ + ++++ E
Sbjct: 242 ----------SANLMTSKQKLEELKRKQEQLQQKKNSIADKYSQQNLLEILNDSISDLES 291
Query: 186 ESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRA 219
ES+N+ L+ L++ F +++K+ R++YH +
Sbjct: 292 ESDNIVHSFLEGNLELKEFKKQFKEKRSSYHSKC 325
>sp|Q9H9H4|VP37B_HUMAN Vacuolar protein sorting-associated protein 37B OS=Homo sapiens
GN=VPS37B PE=1 SV=1
Length = 285
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 171 SLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218
+LL +Q K EE++EN+ + LD EL + +F+ Y+ R H R
Sbjct: 105 TLLALLQAEGAKIEEDTENMAEKFLDGELPLDSFIDVYQSKRKLAHMR 152
>sp|Q8R0J7|VP37B_MOUSE Vacuolar protein sorting-associated protein 37B OS=Mus musculus
GN=Vps37b PE=2 SV=1
Length = 285
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 171 SLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218
+LL +Q K EE++EN+ + LD EL + +F+ Y+ R H R
Sbjct: 105 TLLALLQAEGAKIEEDTENMAEKFLDGELPLDSFIDVYQSKRKLAHMR 152
>sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio GN=lamc1 PE=2 SV=2
Length = 1593
Score = 31.2 bits (69), Expect = 6.8, Method: Composition-based stats.
Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 44 SFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKD-----AYRQFLL 98
+ ++++ PT P + AE A ++ D++ K+ D + AY
Sbjct: 1142 AISKVDIKIPTTSGDPNNMTLLAEEARKLSEKHKADADQIEKIAKDANDTSTKAYNMLKK 1201
Query: 99 SIDQVKIQNNIRDELHRETLQIARD---NLDKELRMIELRNQSKIIRTTELAAAQEKLHD 155
++D ++ DEL+R+ L+ A+D NL+K+ + + + ++ A L
Sbjct: 1202 ALDGENKTSSDIDELNRKYLE-AKDLAKNLEKQAAKVHAEAEEAGNKALKIYANLTSLPP 1260
Query: 156 LERQ--KEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRT 213
+ + ++ K+ AS L ++ ++KTE+E +L L +E ++ + K K +
Sbjct: 1261 INTKTLEDDANKIKKEASDLDKL---IDKTEKEYNDLREDLRGKETEVRKLLDKGKTEQQ 1317
Query: 214 T 214
T
Sbjct: 1318 T 1318
>sp|Q6NZL0|SOGA3_MOUSE Protein SOGA3 OS=Mus musculus GN=Soga3 PE=2 SV=2
Length = 945
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 80 VDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSK 139
+DELR + D R D ++Q +R EL R +K R+++ R +
Sbjct: 368 IDELR---TEMDEMRDTFFEEDACQLQE-MRHELER---------ANKNCRILQYRLRKA 414
Query: 140 IIRTTELAAAQEKLHDLERQKEQLLKLYSPASL-----LKRIQEAMNKTEEESENLHRQL 194
+ A E +L R EQ LK+ S+ L+ ++E TE+E+E L +QL
Sbjct: 415 ERKRLRYAQTGEIDGELLRSLEQDLKVAKDVSVRLHHELENVEEKRTTTEDENEKLRQQL 474
Query: 195 LDRELDIGAFVQKYKKLR 212
++ E+ A + +K++
Sbjct: 475 IEVEIAKQALQNELEKMK 492
>sp|Q99176|SRN2_YEAST Protein SRN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SRN2 PE=1 SV=1
Length = 213
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 165 KLYSPASLLKRIQEAMNKTEEESENLHRQL--LDRELDIGAFVQKYKKLRTTYHRR 218
K Y +L K++++ K +EES L +D D+ F++ Y +RT YH R
Sbjct: 143 KKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLR 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,151,054
Number of Sequences: 539616
Number of extensions: 3295307
Number of successful extensions: 14842
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 500
Number of HSP's that attempted gapping in prelim test: 14301
Number of HSP's gapped (non-prelim): 1067
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)